AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23231

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23231.t1 MTR_7g050560 87.138 311 33 2 1 305 1 310 0.0 553
MS.gene23231.t1 MTR_7g050590 75.427 293 49 3 29 298 1 293 2.06e-156 447
MS.gene23231.t1 MTR_7g050580 66.258 326 73 6 1 305 1 310 3.36e-143 414
MS.gene23231.t1 MTR_3g098790 66.352 318 78 5 3 298 2 312 8.86e-143 414
MS.gene23231.t1 MTR_7g050710 66.149 322 83 6 1 298 1 320 3.52e-141 410
MS.gene23231.t1 MTR_7g050720 62.102 314 85 7 8 287 4 317 2.96e-126 372
MS.gene23231.t1 MTR_8g103940 37.377 305 150 6 12 285 37 331 6.12e-53 187
MS.gene23231.t1 MTR_1g108780 34.932 292 140 8 30 285 13 290 5.76e-48 172
MS.gene23231.t1 MTR_1g035460 35.906 298 139 9 29 285 1 287 7.62e-46 165
MS.gene23231.t1 MTR_7g050640 68.750 112 35 0 3 114 2 113 9.93e-46 156
MS.gene23231.t1 MTR_5g044670 33.333 303 170 8 14 292 16 310 8.80e-42 152
MS.gene23231.t1 MTR_3g061370 35.374 294 150 10 12 284 7 281 2.23e-41 150
MS.gene23231.t1 MTR_2g090425 48.205 195 61 4 360 521 140 327 2.40e-41 151
MS.gene23231.t1 MTR_3g061320 34.343 297 146 10 11 284 9 279 5.01e-41 149
MS.gene23231.t1 MTR_3g061350 33.224 304 163 10 1 284 1 284 3.42e-40 147
MS.gene23231.t1 MTR_3g061340 32.632 285 162 9 11 284 9 274 5.66e-36 135
MS.gene23231.t1 MTR_3g061310 31.359 287 174 8 11 284 9 285 1.14e-33 129
MS.gene23231.t1 MTR_1g035620 30.928 291 164 9 11 283 6 277 4.26e-33 130
MS.gene23231.t1 MTR_5g070440 27.835 291 170 7 6 288 13 271 4.08e-32 124
MS.gene23231.t1 MTR_1g050845 31.359 287 156 6 11 283 6 265 1.46e-31 129
MS.gene23231.t1 MTR_3g061330 32.787 244 131 7 11 236 9 237 1.73e-31 122
MS.gene23231.t1 MTR_3g005480 28.070 285 155 7 13 288 20 263 3.75e-31 122
MS.gene23231.t1 MTR_6g043890 32.155 283 165 7 12 271 13 291 7.98e-31 122
MS.gene23231.t1 MTR_1g035640 33.333 273 162 8 23 283 14 278 2.40e-30 124
MS.gene23231.t1 MTR_3g005490 27.055 292 162 6 6 288 13 262 3.92e-30 119
MS.gene23231.t1 MTR_3g061290 52.941 102 46 1 11 112 9 108 4.05e-29 114
MS.gene23231.t1 MTR_4g119990 29.934 304 177 7 12 284 13 311 4.13e-29 119
MS.gene23231.t1 MTR_6g061070 29.653 317 174 10 8 283 12 320 5.50e-28 117
MS.gene23231.t1 MTR_1g035570 30.714 280 171 6 23 285 14 287 4.73e-27 113
MS.gene23231.t1 MTR_3g005460 27.609 297 179 10 1 288 251 520 1.41e-24 107
MS.gene23231.t1 MTR_3g005460 24.549 277 144 6 13 280 24 244 3.70e-19 90.9
MS.gene23231.t1 MTR_3g005420 28.374 289 179 6 1 288 278 539 1.96e-24 107
MS.gene23231.t1 MTR_3g005420 24.254 268 154 7 7 272 33 253 2.83e-15 79.0
MS.gene23231.t1 MTR_1g035480 34.054 185 107 6 9 192 12 182 2.76e-21 91.7
MS.gene23231.t1 MTR_1g034240 37.500 120 72 1 14 133 7 123 7.68e-21 95.5
MS.gene23231.t1 MTR_1g034240 31.579 133 84 3 160 291 272 398 3.04e-12 68.9
MS.gene23231.t1 MTR_1g021360 29.181 281 174 9 12 272 182 457 9.05e-21 95.5
MS.gene23231.t1 MTR_3g061220 43.137 102 43 2 11 112 9 95 9.58e-21 88.2
MS.gene23231.t1 MTR_4g068320 41.905 105 59 1 14 116 6 110 1.47e-20 94.7
MS.gene23231.t1 MTR_4g068320 29.353 201 118 6 97 290 210 393 3.00e-13 72.0
MS.gene23231.t1 MTR_3g005495 30.916 262 137 9 13 272 242 461 1.79e-19 91.7
MS.gene23231.t1 MTR_3g005495 37.209 86 54 0 30 115 29 114 3.34e-16 81.6
MS.gene23231.t1 MTR_1g035650 30.734 218 104 5 11 201 6 203 8.16e-19 85.5
MS.gene23231.t1 MTR_1g035500 35.862 145 85 4 8 152 19 155 1.15e-17 81.6
MS.gene23231.t1 MTR_1g035440 43.810 105 58 1 12 115 13 117 3.34e-17 81.6
MS.gene23231.t1 MTR_1g033740 35.294 136 81 3 9 144 17 145 6.99e-17 79.3
MS.gene23231.t1 MTR_1g021400 23.512 336 198 9 12 293 28 358 8.86e-17 82.4
MS.gene23231.t1 MTR_1g034210 38.384 99 59 1 14 112 7 103 4.03e-16 79.7
MS.gene23231.t1 MTR_1g034210 38.384 99 59 1 14 112 7 103 5.92e-16 80.1
MS.gene23231.t1 MTR_1g035510 37.903 124 67 4 29 152 1 114 9.35e-16 77.0
MS.gene23231.t1 MTR_3g005440 35.227 88 57 0 28 115 34 121 1.10e-15 79.7
MS.gene23231.t1 MTR_3g005440 27.179 195 125 3 13 206 241 419 1.66e-13 73.2
MS.gene23231.t1 MTR_3g005420 24.254 268 154 7 7 272 14 234 3.16e-15 78.6
MS.gene23231.t1 MTR_1g035520 26.885 305 164 9 29 283 87 382 4.90e-15 77.4
MS.gene23231.t1 MTR_1g035470 37.903 124 68 5 29 152 1 115 2.08e-13 68.2
MS.gene23231.t1 MTR_1g021440 28.313 166 104 5 12 174 21 174 2.64e-13 70.9
MS.gene23231.t1 MTR_1g021380 30.409 171 96 2 13 179 16 167 3.50e-13 71.2
MS.gene23231.t1 MTR_1g021440 28.313 166 104 5 12 174 21 174 3.70e-13 70.9
MS.gene23231.t1 MTR_1g021440 28.313 166 104 5 12 174 21 174 6.09e-13 70.9
MS.gene23231.t1 MTR_1g021440 28.313 166 104 5 12 174 21 174 8.37e-13 70.5
MS.gene23231.t1 MTR_1g021320 32.990 97 63 2 12 108 182 276 2.92e-11 66.6
MS.gene23231.t1 MTR_1g021270 28.415 183 114 6 123 299 191 362 7.79e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23231.t1 AT3G18990 27.616 344 171 8 11 285 2 336 2.18e-28 116
MS.gene23231.t1 AT3G18990 27.405 343 172 7 14 288 6 339 2.18e-28 116
MS.gene23231.t1 AT4G01580 41.739 115 67 0 3 117 19 133 2.13e-23 98.2
MS.gene23231.t1 AT3G18960 40.870 115 68 0 3 117 19 133 3.57e-22 94.7
MS.gene23231.t1 AT3G18960 40.870 115 68 0 3 117 19 133 6.10e-22 94.4
MS.gene23231.t1 AT1G49475 42.342 111 61 2 7 115 25 134 3.15e-21 92.0
MS.gene23231.t1 AT4G33280 25.879 313 193 12 12 293 23 327 2.76e-18 86.7
MS.gene23231.t1 AT3G18960 45.455 88 48 0 30 117 9 96 1.64e-17 80.9
MS.gene23231.t1 AT1G49480 30.065 153 99 3 133 285 77 221 4.65e-13 69.3
MS.gene23231.t1 AT1G49480 30.065 153 99 3 133 285 77 221 4.65e-13 69.3
MS.gene23231.t1 AT1G49480 30.065 153 99 3 133 285 77 221 4.65e-13 69.3

Find 102 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTAAATGAAGGAATT+TGG 0.170862 7.2:-52521480 MS.gene23231:CDS
GATCAAACTGTAGTCCTTTA+AGG 0.189876 7.2:+52521431 None:intergenic
TGCAAAATGGAAATTAAATT+TGG 0.194062 7.2:-52522886 MS.gene23231:CDS
TTCCATCAACCACGTGAAAT+TGG 0.227140 7.2:-52522657 MS.gene23231:CDS
TATTTCTCTACAAACTTTCT+TGG 0.243867 7.2:+52522954 None:intergenic
AGGAAATAAATCAGCAAAAT+TGG 0.254339 7.2:-52520770 MS.gene23231:intron
CTAATCAGGATGACCCTTAA+AGG 0.288761 7.2:-52521445 MS.gene23231:CDS
CGTGGAACACCGATTTCTTA+TGG 0.302917 7.2:-52522174 MS.gene23231:intron
GAATGGATAATTTATCTCTA+AGG 0.305393 7.2:+52522725 None:intergenic
TCATCACATTGCTCAAGATT+TGG 0.314687 7.2:-52519138 MS.gene23231:CDS
AGAAAGTTTGTAGAGAAATA+TGG 0.315950 7.2:-52522951 MS.gene23231:CDS
AGACTCCAAATGGTGCAAAA+TGG 0.337543 7.2:-52522899 MS.gene23231:CDS
TTGCACCACATCACCCTAAC+TGG 0.342229 7.2:-52519181 MS.gene23231:CDS
CTTTAAGGGTCATCCTGATT+AGG 0.346771 7.2:+52521446 None:intergenic
ATCTCATCTGTTGCTGCAAC+AGG 0.349421 7.2:-52519790 MS.gene23231:CDS
CAGAATATACCAGTTAAGTT+TGG 0.352430 7.2:-52521547 MS.gene23231:CDS
TGAAGTTGAGAAATTGAATA+AGG 0.355428 7.2:-52522619 MS.gene23231:CDS
TGTGGTCTGCCTCCATTTCT+CGG 0.379262 7.2:+52519227 None:intergenic
CAGATATACATCAAACTTGA+TGG 0.381780 7.2:-52519988 MS.gene23231:CDS
GAGAATGTCCTAAGCCTGTT+TGG 0.383518 7.2:+52519738 None:intergenic
ATCCTGATTAGGTACTTTGC+AGG 0.384916 7.2:+52521457 None:intergenic
TGGTAAGACACACTTTGATT+TGG 0.385393 7.2:-52521527 MS.gene23231:CDS
GAAGAGCAGCTGCAATCTTA+TGG 0.393709 7.2:+52519532 None:intergenic
CATTGTCACCAATGCCAAAC+AGG 0.401223 7.2:-52519752 MS.gene23231:CDS
TTCCAATTTCACGTGGTTGA+TGG 0.401701 7.2:+52522655 None:intergenic
TGTGTCTTACCAAACTTAAC+TGG 0.416239 7.2:+52521538 None:intergenic
AAGGGTTACCCTCCGAGAAA+TGG 0.420930 7.2:-52519239 MS.gene23231:CDS
ATTTATTTGTTGTTAAATGA+AGG 0.421453 7.2:-52521487 MS.gene23231:CDS
GGCCTGCAAAGTACCTAATC+AGG 0.423211 7.2:-52521459 MS.gene23231:CDS
CTGGTCATTCACACCTTGAA+TGG 0.433698 7.2:-52519570 MS.gene23231:CDS
TGCAACTTACCATAAGAAAT+CGG 0.439757 7.2:+52522165 None:intergenic
CTACAGTTTGATCTCACAAC+TGG 0.442831 7.2:-52521421 MS.gene23231:CDS
TGTACCTAGGTTGATGTTGT+TGG 0.449610 7.2:+52519373 None:intergenic
ATCAAACTGTAGTCCTTTAA+GGG 0.460291 7.2:+52521432 None:intergenic
TAGGGTGATGTGGTGCAAAT+TGG 0.461278 7.2:+52519186 None:intergenic
AACTAAGACTTTGTCTGAGC+CGG 0.463854 7.2:+52519088 None:intergenic
CGAAATTGAATGAGCCATGC+TGG 0.464724 7.2:+52519955 None:intergenic
CATGTGTCAATGATCCAGTT+AGG 0.465895 7.2:+52519167 None:intergenic
GATATTTGAAAAGCAGAAGA+TGG 0.469802 7.2:+52522790 None:intergenic
TTCAGTTGTGAGACCATTCA+AGG 0.474778 7.2:+52519557 None:intergenic
ATGCGGAGGTATTAGTTCTC+TGG 0.475180 7.2:-52520797 MS.gene23231:CDS
TAGGTTGATGTTGTTGGCCG+TGG 0.492653 7.2:+52519379 None:intergenic
AGATTTGGAGCATCTCACTT+TGG 0.493706 7.2:-52519123 MS.gene23231:CDS
AAATGGATTGGCTTCACCTC+AGG 0.494267 7.2:+52523848 None:intergenic
ATATATCTAAAGACTCCAAA+TGG 0.494837 7.2:-52522909 MS.gene23231:CDS
ACTAAGACTTTGTCTGAGCC+GGG 0.495265 7.2:+52519089 None:intergenic
CAAATTCCATGAGTTTCTCA+TGG 0.498917 7.2:+52519475 None:intergenic
AAGGACAATAACTTGAAAGT+TGG 0.499244 7.2:-52521382 MS.gene23231:CDS
TTAGCTGCAACTCTTTGGAA+TGG 0.508092 7.2:+52522708 None:intergenic
TCTAAAGATGTGAACAATGA+AGG 0.509907 7.2:+52521318 None:intergenic
ATGGAGTTCAGCAAATTCAA+TGG 0.509945 7.2:+52519494 None:intergenic
CACCAATGCCAAACAGGCTT+AGG 0.513236 7.2:-52519746 MS.gene23231:CDS
ACTAAAGAATATGACATAGT+TGG 0.514191 7.2:+52519429 None:intergenic
GTCCTAAGCCTGTTTGGCAT+TGG 0.518174 7.2:+52519744 None:intergenic
TTTGTAGAGAAATATGGAGA+AGG 0.519534 7.2:-52522945 MS.gene23231:CDS
TGGAGTTCAGCAAATTCAAT+GGG 0.526869 7.2:+52519495 None:intergenic
CAATTTCGAGCCCTTCTCAC+AGG 0.527521 7.2:-52519940 MS.gene23231:intron
CGCATGACAACAACAAAGGA+TGG 0.548509 7.2:+52522206 None:intergenic
ATGTGTCAATGATCCAGTTA+GGG 0.550481 7.2:+52519168 None:intergenic
GTCTGCCTCCATTTCTCGGA+GGG 0.551954 7.2:+52519231 None:intergenic
CTTGCTCAAAATCTTCATGA+AGG 0.562390 7.2:-52523812 MS.gene23231:CDS
CAGGTCATAACCTGTGAGAA+GGG 0.566059 7.2:+52519930 None:intergenic
ACTTTGGCTGATTCCTACCC+CGG 0.569118 7.2:-52519107 MS.gene23231:CDS
TGATCTCACAACTGGATGGA+AGG 0.573601 7.2:-52521413 MS.gene23231:CDS
TTTGATTTGGATAAGAAGAG+AGG 0.576081 7.2:-52521514 MS.gene23231:CDS
GACTTTGTCTGAGCCGGGGT+AGG 0.578277 7.2:+52519094 None:intergenic
CGAGCAACTGTGTTAGCTTG+TGG 0.581105 7.2:+52519209 None:intergenic
GATCATCACTCTCTAGCTCA+TGG 0.584001 7.2:-52522813 MS.gene23231:CDS
ACAGGTCATAACCTGTGAGA+AGG 0.584392 7.2:+52519929 None:intergenic
AGTTTGATCTCACAACTGGA+TGG 0.597924 7.2:-52521417 MS.gene23231:CDS
CAGATGAGATGATGACATGA+AGG 0.601513 7.2:+52519803 None:intergenic
GTGGGATCTCGATGCTACAT+TGG 0.603509 7.2:+52519398 None:intergenic
GTAGCAACTTTGCATCATGC+TGG 0.604292 7.2:-52522597 MS.gene23231:CDS
AGGTTGATGTTGTTGGCCGT+GGG 0.608107 7.2:+52519380 None:intergenic
TGAACTCCATGAGAAACTCA+TGG 0.612709 7.2:-52519481 MS.gene23231:CDS
CTATTGCTTCCAATTTCACG+TGG 0.616486 7.2:+52522648 None:intergenic
CATTGGTGACAATGCCGAGG+TGG 0.619548 7.2:+52519761 None:intergenic
GGTTACCCTCCGAGAAATGG+AGG 0.619635 7.2:-52519236 MS.gene23231:CDS
TGAAGTGATCTCCGATGTGG+TGG 0.624107 7.2:-52520833 MS.gene23231:intron
TGGTTGATGGAATTCAAAAG+AGG 0.624709 7.2:+52522668 None:intergenic
GAAGTAGTTCTCCGATGCGG+AGG 0.624945 7.2:-52520811 MS.gene23231:CDS
AATGTAGCATCGAGATCCCA+CGG 0.627920 7.2:-52519396 MS.gene23231:CDS
ATGGCGAAAATTATCCAGCA+TGG 0.628226 7.2:-52519969 MS.gene23231:CDS
ATGATCCAGTTAGGGTGATG+TGG 0.638432 7.2:+52519176 None:intergenic
ATATCTGAGAGCTAAGATTG+AGG 0.638998 7.2:+52520004 None:intergenic
TGACATGTTGTTGCATCGTG+AGG 0.639702 7.2:-52519454 MS.gene23231:CDS
TGGATGGAAGGCATTTGCAA+AGG 0.644602 7.2:-52521401 MS.gene23231:CDS
GGTATTAGTTCTCTGGTGAG+AGG 0.646126 7.2:-52520790 MS.gene23231:CDS
GCAACAGGTGTTACCCACCT+CGG 0.647624 7.2:-52519775 MS.gene23231:CDS
GAGAACTAATACCTCCGCAT+CGG 0.649291 7.2:+52520800 None:intergenic
ACGGCCAACAACATCAACCT+AGG 0.658914 7.2:-52519377 MS.gene23231:intron
GAGAACTACTTCCACCACAT+CGG 0.659287 7.2:+52520822 None:intergenic
ATTGGTGACAATGCCGAGGT+GGG 0.663442 7.2:+52519762 None:intergenic
GGTCTGCCTCCATTTCTCGG+AGG 0.664300 7.2:+52519230 None:intergenic
TGGCATTGGTGACAATGCCG+AGG 0.667238 7.2:+52519758 None:intergenic
TTGTGAAGTGATCTCCGATG+TGG 0.668891 7.2:-52520836 MS.gene23231:intron
CTAAGACTTTGTCTGAGCCG+GGG 0.675679 7.2:+52519090 None:intergenic
TGTCATGCGTGCATCATACG+TGG 0.677837 7.2:-52522192 MS.gene23231:CDS
TGCACGCATGACAACAACAA+AGG 0.693553 7.2:+52522202 None:intergenic
CATGCTGGCAGAGAGTGCAA+AGG 0.694988 7.2:-52522582 MS.gene23231:intron
GGCTAGTGATGAAACTCCTG+AGG 0.700961 7.2:-52523864 MS.gene23231:CDS
GTGGAAGTAGTTCTCCGATG+CGG 0.704487 7.2:-52520814 MS.gene23231:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTTTTAAAATAAAAAATTA+AGG + chr7.2:52519550-52519569 None:intergenic 10.0%
!! ATATTATCACAAATGTTTAT+TGG - chr7.2:52521248-52521267 MS.gene23231:intron 15.0%
!!! ATTTATTTGTTGTTAAATGA+AGG - chr7.2:52521469-52521488 MS.gene23231:CDS 15.0%
!!! CTTTGATAATAATAATTCTT+AGG + chr7.2:52521013-52521032 None:intergenic 15.0%
!! AAAAATTAGAAAGTTCTTGT+TGG + chr7.2:52521357-52521376 None:intergenic 20.0%
!! AATAATAATTCTTAGGAGTT+AGG + chr7.2:52521006-52521025 None:intergenic 20.0%
!! ATAATTAAGAAAAATGCACA+TGG - chr7.2:52519673-52519692 MS.gene23231:intron 20.0%
!! ATTATCTTGAAAAAATGGAT+TGG + chr7.2:52519123-52519142 None:intergenic 20.0%
!! CAAGTATTATCTTGAAAAAA+TGG + chr7.2:52519128-52519147 None:intergenic 20.0%
!! CATATATGAATTATTAAGCA+TGG + chr7.2:52522053-52522072 None:intergenic 20.0%
!! CTGTTAGTATCTATAATATT+AGG - chr7.2:52522693-52522712 MS.gene23231:CDS 20.0%
!! TAAGGAAAAAAAGTTCAAAT+TGG + chr7.2:52519532-52519551 None:intergenic 20.0%
!! TGCAAAATGGAAATTAAATT+TGG - chr7.2:52520070-52520089 MS.gene23231:intron 20.0%
!! TTAAATTTGGTAAAAAGTGA+TGG - chr7.2:52520083-52520102 MS.gene23231:intron 20.0%
!! TTACGTCATAAAAATAGTAA+GGG + chr7.2:52522542-52522561 None:intergenic 20.0%
!!! AATTACTTAGTTTTCTAATC+AGG + chr7.2:52519893-52519912 None:intergenic 20.0%
!!! ACAAATTTTTTTCCTCAAAA+GGG - chr7.2:52519724-52519743 MS.gene23231:intron 20.0%
!!! CAATAAGTTGAATTACTTTA+TGG - chr7.2:52522807-52522826 MS.gene23231:CDS 20.0%
!!! TAAAAAGTGATGGAAAAATA+TGG - chr7.2:52520093-52520112 MS.gene23231:intron 20.0%
!!! TTTTCTGATAAATGTGATTT+AGG - chr7.2:52519912-52519931 MS.gene23231:intron 20.0%
!!! TTTTTTTTGATCCCAAAAAA+TGG - chr7.2:52522859-52522878 MS.gene23231:CDS 20.0%
! AAAAAAAAAATGTCGCTACA+TGG - chr7.2:52519498-52519517 MS.gene23231:CDS 25.0%
! AAACAAAATGAACGAAATGA+TGG - chr7.2:52521033-52521052 MS.gene23231:intron 25.0%
! AAATATGGTTTGAAAAAGGT+TGG - chr7.2:52520108-52520127 MS.gene23231:intron 25.0%
! AATGAGTTATTATGCTTCTT+TGG - chr7.2:52522015-52522034 MS.gene23231:intron 25.0%
! ACTAAAGAATATGACATAGT+TGG + chr7.2:52523530-52523549 None:intergenic 25.0%
! AGAAAGTTTGTAGAGAAATA+TGG - chr7.2:52520005-52520024 MS.gene23231:CDS 25.0%
! AGGAAATAAATCAGCAAAAT+TGG - chr7.2:52522186-52522205 MS.gene23231:CDS 25.0%
! ATATAAATGCTATCTAACAG+GGG - chr7.2:52519646-52519665 MS.gene23231:intron 25.0%
! ATATATCTAAAGACTCCAAA+TGG - chr7.2:52520047-52520066 MS.gene23231:intron 25.0%
! CAGTATTATAATACAACCTT+TGG + chr7.2:52523650-52523669 None:intergenic 25.0%
! CTTACGTCATAAAAATAGTA+AGG + chr7.2:52522543-52522562 None:intergenic 25.0%
! GAATGGATAATTTATCTCTA+AGG + chr7.2:52520234-52520253 None:intergenic 25.0%
! GATATAAATGCTATCTAACA+GGG - chr7.2:52519645-52519664 MS.gene23231:intron 25.0%
! GGAAAAATATGGTTTGAAAA+AGG - chr7.2:52520104-52520123 MS.gene23231:intron 25.0%
! TAAAAAATGTTGCATGTATC+TGG - chr7.2:52521900-52521919 MS.gene23231:intron 25.0%
! TACTATCATGCATACTAATT+TGG - chr7.2:52519957-52519976 MS.gene23231:CDS 25.0%
! TATTATGACACAAGATTTGT+TGG - chr7.2:52519286-52519305 MS.gene23231:intron 25.0%
! TATTTCTCTACAAACTTTCT+TGG + chr7.2:52520005-52520024 None:intergenic 25.0%
! TGAAGTTGAGAAATTGAATA+AGG - chr7.2:52520337-52520356 MS.gene23231:intron 25.0%
! TGATATAAATGCTATCTAAC+AGG - chr7.2:52519644-52519663 MS.gene23231:intron 25.0%
! TGCAAAATTTGAACACAATA+AGG + chr7.2:52520661-52520680 None:intergenic 25.0%
! TGCATATGAGCTTATATTTA+GGG - chr7.2:52519701-52519720 MS.gene23231:intron 25.0%
! TGTAAATAAAAAGTCGAGTT+TGG - chr7.2:52519751-52519770 MS.gene23231:CDS 25.0%
! TGTTGTTAAATGAAGGAATT+TGG - chr7.2:52521476-52521495 MS.gene23231:CDS 25.0%
! TTGTTGTATCTTGTATGATT+AGG + chr7.2:52523680-52523699 None:intergenic 25.0%
!! TATTGTGTTCAAATTTTGCA+GGG - chr7.2:52520661-52520680 MS.gene23231:intron 25.0%
!! TTATTGTGTTCAAATTTTGC+AGG - chr7.2:52520660-52520679 MS.gene23231:intron 25.0%
!! TTATTTGAGATAGGACTTAT+AGG + chr7.2:52519368-52519387 None:intergenic 25.0%
!!! CAAATTTTTTTCCTCAAAAG+GGG - chr7.2:52519725-52519744 MS.gene23231:intron 25.0%
!!! GACAAATTTTTTTCCTCAAA+AGG - chr7.2:52519723-52519742 MS.gene23231:intron 25.0%
!!! GCATATTTGTTATTTGAGAT+AGG + chr7.2:52519377-52519396 None:intergenic 25.0%
!!! TTTTTAAGCTTCTTAGTTAC+AGG + chr7.2:52521886-52521905 None:intergenic 25.0%
AAACCAGCAAGTAATTAACT+TGG - chr7.2:52519570-52519589 MS.gene23231:CDS 30.0%
AACCAGCAAGTAATTAACTT+GGG - chr7.2:52519571-52519590 MS.gene23231:CDS 30.0%
AAGAAATTGCTTCAAAACCA+AGG - chr7.2:52523698-52523717 MS.gene23231:intron 30.0%
AAGGACAATAACTTGAAAGT+TGG - chr7.2:52521574-52521593 MS.gene23231:intron 30.0%
AAGTTGAACTTCTTAGTTAC+AGG + chr7.2:52521954-52521973 None:intergenic 30.0%
AATAGACAATTCATCAGCAT+TGG + chr7.2:52523339-52523358 None:intergenic 30.0%
ACAAATATGCCGAAATTGTT+AGG - chr7.2:52519387-52519406 MS.gene23231:CDS 30.0%
ACCGTTCATATGATCTATAA+CGG + chr7.2:52522370-52522389 None:intergenic 30.0%
AGAAATTGCTTCAAAACCAA+GGG - chr7.2:52523699-52523718 MS.gene23231:intron 30.0%
ATAAAAATAGTAAGGGCTTG+GGG + chr7.2:52522535-52522554 None:intergenic 30.0%
ATCAAACTGTAGTCCTTTAA+GGG + chr7.2:52521527-52521546 None:intergenic 30.0%
ATTGTTCTACATCTCAAAGT+AGG - chr7.2:52521683-52521702 MS.gene23231:intron 30.0%
CAAGGATAAAGAAAAGGAAT+GGG - chr7.2:52521818-52521837 MS.gene23231:intron 30.0%
CAGAATATACCAGTTAAGTT+TGG - chr7.2:52521409-52521428 MS.gene23231:CDS 30.0%
CAGATATACATCAAACTTGA+TGG - chr7.2:52522968-52522987 MS.gene23231:intron 30.0%
CATAAAAATAGTAAGGGCTT+GGG + chr7.2:52522536-52522555 None:intergenic 30.0%
CTAGTCCATCATAAAATTAG+TGG + chr7.2:52519778-52519797 None:intergenic 30.0%
CTGCATATGAGCTTATATTT+AGG - chr7.2:52519700-52519719 MS.gene23231:intron 30.0%
GATATTTGAAAAGCAGAAGA+TGG + chr7.2:52520169-52520188 None:intergenic 30.0%
GTGAGTGTAATCAAGATTTA+TGG + chr7.2:52523110-52523129 None:intergenic 30.0%
TAGCATGTATCATGACATAT+TGG - chr7.2:52519599-52519618 MS.gene23231:intron 30.0%
TCAAGGATAAAGAAAAGGAA+TGG - chr7.2:52521817-52521836 MS.gene23231:intron 30.0%
TCAATTTAGTGACAGAAATG+AGG - chr7.2:52522224-52522243 MS.gene23231:CDS 30.0%
TCATAAAAATAGTAAGGGCT+TGG + chr7.2:52522537-52522556 None:intergenic 30.0%
TCTAAAGATGTGAACAATGA+AGG + chr7.2:52521641-52521660 None:intergenic 30.0%
TGATATGAATATGCGATACA+AGG + chr7.2:52522784-52522803 None:intergenic 30.0%
TGCAACTTACCATAAGAAAT+CGG + chr7.2:52520794-52520813 None:intergenic 30.0%
TGCTGAAAGAAATAAACCAA+AGG - chr7.2:52523631-52523650 MS.gene23231:intron 30.0%
TTATGTGTGTGAGTTTATGA+TGG - chr7.2:52519450-52519469 MS.gene23231:CDS 30.0%
TTCATTACATTGACCACAAT+TGG - chr7.2:52522663-52522682 MS.gene23231:CDS 30.0%
TTCCTTTCAATCACACTAAA+TGG - chr7.2:52522729-52522748 MS.gene23231:CDS 30.0%
TTGTAGGCTAATGAAACTAT+GGG - chr7.2:52519808-52519827 MS.gene23231:CDS 30.0%
TTTGTAGAGAAATATGGAGA+AGG - chr7.2:52520011-52520030 MS.gene23231:CDS 30.0%
TTTGTAGGCTAATGAAACTA+TGG - chr7.2:52519807-52519826 MS.gene23231:CDS 30.0%
! AAGTTAATTACTTGCTGGTT+TGG + chr7.2:52519571-52519590 None:intergenic 30.0%
! AATTTCCATTTTGCACCATT+TGG + chr7.2:52520065-52520084 None:intergenic 30.0%
! ATTTGTTGGTCATAGTTTGT+GGG - chr7.2:52519300-52519319 MS.gene23231:intron 30.0%
! CGTTTGTCTTTTCTTTTGAT+TGG - chr7.2:52521386-52521405 MS.gene23231:CDS 30.0%
! GTTTCATTAGCCTACAAATT+TGG + chr7.2:52519805-52519824 None:intergenic 30.0%
! TTGAGTTAGTTTCTTTGTTC+AGG - chr7.2:52519219-52519238 MS.gene23231:CDS 30.0%
! TTGGTCCACTAATTTTATGA+TGG - chr7.2:52519770-52519789 MS.gene23231:CDS 30.0%
!! AATTGACATACAGTTTTAGC+TGG + chr7.2:52520563-52520582 None:intergenic 30.0%
!! ATGATTTCCTCTATTTTTCC+TGG - chr7.2:52522430-52522449 MS.gene23231:intron 30.0%
!! TTTGATTTGGATAAGAAGAG+AGG - chr7.2:52521442-52521461 MS.gene23231:CDS 30.0%
!!! AAACGACATACATTTTTAGC+AGG - chr7.2:52520591-52520610 MS.gene23231:intron 30.0%
AAATGAGGAAGTAAAGTGTG+CGG - chr7.2:52522239-52522258 MS.gene23231:CDS 35.0%
AACTGTATGTCAATTCAACG+TGG - chr7.2:52520568-52520587 MS.gene23231:intron 35.0%
AAGAACCAATTGGTATCAAC+GGG + chr7.2:52520949-52520968 None:intergenic 35.0%
ACCAGATCTGTTGAATAAAG+GGG + chr7.2:52523371-52523390 None:intergenic 35.0%
ACTATTGTAGAACAGCTATC+AGG - chr7.2:52520533-52520552 MS.gene23231:intron 35.0%
AGAAGCTTCTTCTTTCACTT+GGG + chr7.2:52521798-52521817 None:intergenic 35.0%
ATATCTGAGAGCTAAGATTG+AGG + chr7.2:52522955-52522974 None:intergenic 35.0%
ATGGAGTTCAGCAAATTCAA+TGG + chr7.2:52523465-52523484 None:intergenic 35.0%
ATGTATCTGGTGTATGTTCA+AGG - chr7.2:52521913-52521932 MS.gene23231:intron 35.0%
ATGTGTCAATGATCCAGTTA+GGG + chr7.2:52523791-52523810 None:intergenic 35.0%
ATTCTCAAAACCATGTATGC+TGG - chr7.2:52523235-52523254 MS.gene23231:intron 35.0%
CAAATTCCATGAGTTTCTCA+TGG + chr7.2:52523484-52523503 None:intergenic 35.0%
CAAGAACCAATTGGTATCAA+CGG + chr7.2:52520950-52520969 None:intergenic 35.0%
CACCATTTAGTGTGATTGAA+AGG + chr7.2:52522734-52522753 None:intergenic 35.0%
CATAAACTCACACACATAAG+TGG + chr7.2:52519449-52519468 None:intergenic 35.0%
CTATTGTAGAACAGCTATCA+GGG - chr7.2:52520534-52520553 MS.gene23231:intron 35.0%
CTTCACAAGAGCAATTTCAT+CGG + chr7.2:52522108-52522127 None:intergenic 35.0%
CTTGCTCAAAATCTTCATGA+AGG - chr7.2:52519144-52519163 MS.gene23231:CDS 35.0%
CTTTCTCAACAAGAACCAAT+TGG + chr7.2:52520959-52520978 None:intergenic 35.0%
GACCAGATCTGTTGAATAAA+GGG + chr7.2:52523372-52523391 None:intergenic 35.0%
GATCAAACTGTAGTCCTTTA+AGG + chr7.2:52521528-52521547 None:intergenic 35.0%
GCCGTTATAGATCATATGAA+CGG - chr7.2:52522366-52522385 MS.gene23231:intron 35.0%
GCTTCTCAAGGATAAAGAAA+AGG - chr7.2:52521812-52521831 MS.gene23231:intron 35.0%
GGTAAGTTGCAAAGAAAGTT+TGG - chr7.2:52520803-52520822 MS.gene23231:CDS 35.0%
GTATGATTTCCATTGTACCT+AGG + chr7.2:52523599-52523618 None:intergenic 35.0%
GTTGCTTAAAAGTCATGATG+TGG + chr7.2:52523273-52523292 None:intergenic 35.0%
TAAAAATAGTAAGGGCTTGG+GGG + chr7.2:52522534-52522553 None:intergenic 35.0%
TAACAGACAATCACCAATTG+TGG + chr7.2:52522679-52522698 None:intergenic 35.0%
TACCCAAGTTAATTACTTGC+TGG + chr7.2:52519576-52519595 None:intergenic 35.0%
TATTTCCCGTTGATACCAAT+TGG - chr7.2:52520941-52520960 MS.gene23231:intron 35.0%
TCATCACATTGCTCAAGATT+TGG - chr7.2:52523818-52523837 MS.gene23231:CDS 35.0%
TGAAAATGTGATTCTGCCAT+GGG - chr7.2:52522269-52522288 MS.gene23231:CDS 35.0%
TGACCAGATCTGTTGAATAA+AGG + chr7.2:52523373-52523392 None:intergenic 35.0%
TGGAGTTCAGCAAATTCAAT+GGG + chr7.2:52523464-52523483 None:intergenic 35.0%
TGGTAAGACACACTTTGATT+TGG - chr7.2:52521429-52521448 MS.gene23231:CDS 35.0%
TGTCATCAACATAACCAAAC+AGG + chr7.2:52523048-52523067 None:intergenic 35.0%
TGTGTCTTACCAAACTTAAC+TGG + chr7.2:52521421-52521440 None:intergenic 35.0%
TGTTCTACAATAGTTCCGAA+GGG + chr7.2:52520527-52520546 None:intergenic 35.0%
TTGATTACACTCACTAGATC+AGG - chr7.2:52523116-52523135 MS.gene23231:intron 35.0%
! TATTTACAAGTCCCCTTTTG+AGG + chr7.2:52519739-52519758 None:intergenic 35.0%
! TCATTAGCCTACAAATTTGG+TGG + chr7.2:52519802-52519821 None:intergenic 35.0%
! TGGTTTATTTCTTTCAGCAG+CGG + chr7.2:52523630-52523649 None:intergenic 35.0%
!! GATTTGTTGGTCATAGTTTG+TGG - chr7.2:52519299-52519318 MS.gene23231:intron 35.0%
!! TGGTTGATGGAATTCAAAAG+AGG + chr7.2:52520291-52520310 None:intergenic 35.0%
!!! TCTTTTTAGCTGCAACTCTT+TGG + chr7.2:52520256-52520275 None:intergenic 35.0%
AAACTCACACACATAAGTGG+AGG + chr7.2:52519446-52519465 None:intergenic 40.0%
AAAGAATTGCCCAGCTCAAA+TGG - chr7.2:52520975-52520994 MS.gene23231:intron 40.0%
ACTGCCCTCTAACTATTACT+TGG - chr7.2:52521163-52521182 MS.gene23231:intron 40.0%
AGACTCCAAATGGTGCAAAA+TGG - chr7.2:52520057-52520076 MS.gene23231:intron 40.0%
AGTTTGATCTCACAACTGGA+TGG - chr7.2:52521539-52521558 MS.gene23231:CDS 40.0%
ATATGCCGAAATTGTTAGGC+CGG - chr7.2:52519391-52519410 MS.gene23231:CDS 40.0%
ATCATATGAACGGTCCAGAT+TGG - chr7.2:52522376-52522395 MS.gene23231:intron 40.0%
ATCCTGATTAGGTACTTTGC+AGG + chr7.2:52521502-52521521 None:intergenic 40.0%
ATGGCGAAAATTATCCAGCA+TGG - chr7.2:52522987-52523006 MS.gene23231:intron 40.0%
ATTGGACTACCGAAATGGAA+GGG - chr7.2:52519617-52519636 MS.gene23231:intron 40.0%
CAACATCAACCTAGGTACAA+TGG - chr7.2:52523587-52523606 MS.gene23231:intron 40.0%
CAGATGAGATGATGACATGA+AGG + chr7.2:52523156-52523175 None:intergenic 40.0%
CAGCCCAAGTAATAGTTAGA+GGG + chr7.2:52521170-52521189 None:intergenic 40.0%
CATGTGTCAATGATCCAGTT+AGG + chr7.2:52523792-52523811 None:intergenic 40.0%
CCATGTATGCTGGAAAATCA+AGG - chr7.2:52523245-52523264 MS.gene23231:intron 40.0%
CGATGAGGATTAAGAGTTAC+CGG - chr7.2:52522454-52522473 MS.gene23231:intron 40.0%
CTAATCAGGATGACCCTTAA+AGG - chr7.2:52521511-52521530 MS.gene23231:CDS 40.0%
CTACAGTTTGATCTCACAAC+TGG - chr7.2:52521535-52521554 MS.gene23231:CDS 40.0%
CTATTGCTTCCAATTTCACG+TGG + chr7.2:52520311-52520330 None:intergenic 40.0%
CTGCCCTCTAACTATTACTT+GGG - chr7.2:52521164-52521183 MS.gene23231:intron 40.0%
CTGTTCTACAATAGTTCCGA+AGG + chr7.2:52520528-52520547 None:intergenic 40.0%
GACATATTGGACTACCGAAA+TGG - chr7.2:52519612-52519631 MS.gene23231:intron 40.0%
GACTAGACCACCAAATTTGT+AGG - chr7.2:52519792-52519811 MS.gene23231:CDS 40.0%
GAGAAGCTTCTTCTTTCACT+TGG + chr7.2:52521799-52521818 None:intergenic 40.0%
GATGAGGATTAAGAGTTACC+GGG - chr7.2:52522455-52522474 MS.gene23231:intron 40.0%
GTGAAAATGTGATTCTGCCA+TGG - chr7.2:52522268-52522287 MS.gene23231:CDS 40.0%
GTGAAAGAAGAAGCTTCTCA+AGG - chr7.2:52521800-52521819 MS.gene23231:intron 40.0%
TATCAATCGCCCTTCCATTT+CGG + chr7.2:52519629-52519648 None:intergenic 40.0%
TATGCTCCATTGTATGAGTG+TGG + chr7.2:52522305-52522324 None:intergenic 40.0%
TATTGGACTACCGAAATGGA+AGG - chr7.2:52519616-52519635 MS.gene23231:intron 40.0%
TCATCGTCCAGGAAAAATAG+AGG + chr7.2:52522440-52522459 None:intergenic 40.0%
TCCCCTTTATTCAACAGATC+TGG - chr7.2:52523367-52523386 MS.gene23231:intron 40.0%
TCTACATCTCAAAGTAGGCT+AGG - chr7.2:52521688-52521707 MS.gene23231:intron 40.0%
TGAACTCCATGAGAAACTCA+TGG - chr7.2:52523475-52523494 MS.gene23231:intron 40.0%
TGCAGCCTGTTTACTCAATT+CGG - chr7.2:52519835-52519854 MS.gene23231:intron 40.0%
TGGGAAAGGAACTCAATCAA+TGG - chr7.2:52523306-52523325 MS.gene23231:intron 40.0%
TTCAGTTGTGAGACCATTCA+AGG + chr7.2:52523402-52523421 None:intergenic 40.0%
TTCCAATTTCACGTGGTTGA+TGG + chr7.2:52520304-52520323 None:intergenic 40.0%
TTCCATCAACCACGTGAAAT+TGG - chr7.2:52520299-52520318 MS.gene23231:intron 40.0%
TTCTTTCCATGATGTGTCGA+TGG - chr7.2:52520488-52520507 MS.gene23231:intron 40.0%
TTGAGTTCCTTTCCCAAAAG+TGG + chr7.2:52523302-52523321 None:intergenic 40.0%
! AAGCAACGTATCACCACTTT+TGG - chr7.2:52523286-52523305 MS.gene23231:intron 40.0%
! AGATTTGGAGCATCTCACTT+TGG - chr7.2:52523833-52523852 MS.gene23231:CDS 40.0%
! CCTTGATTTTCCAGCATACA+TGG + chr7.2:52523248-52523267 None:intergenic 40.0%
! CTTTAAGGGTCATCCTGATT+AGG + chr7.2:52521513-52521532 None:intergenic 40.0%
! TCATCGGTTATTGATCGTTC+TGG + chr7.2:52522092-52522111 None:intergenic 40.0%
! TTAGCTGCAACTCTTTGGAA+TGG + chr7.2:52520251-52520270 None:intergenic 40.0%
!! AGAAGCATTTGATGTGCGTA+TGG + chr7.2:52522885-52522904 None:intergenic 40.0%
!! AGCAACGTATCACCACTTTT+GGG - chr7.2:52523287-52523306 MS.gene23231:intron 40.0%
!! TCTATTTTTCCTGGACGATG+AGG - chr7.2:52522439-52522458 MS.gene23231:intron 40.0%
!! TGTACCTAGGTTGATGTTGT+TGG + chr7.2:52523586-52523605 None:intergenic 40.0%
!!! ATGTGCGTATGGCCATTTTT+TGG + chr7.2:52522874-52522893 None:intergenic 40.0%
!!! TGTGCGTATGGCCATTTTTT+GGG + chr7.2:52522873-52522892 None:intergenic 40.0%
AATTGCCCAGCTCAAATGGA+GGG - chr7.2:52520979-52520998 MS.gene23231:intron 45.0%
ACAGGTCATAACCTGTGAGA+AGG + chr7.2:52523030-52523049 None:intergenic 45.0%
ACTCTTAATCCTCATCGTCC+AGG + chr7.2:52522451-52522470 None:intergenic 45.0%
AGCTGAGGCCTATCTCAAAA+CGG - chr7.2:52522504-52522523 MS.gene23231:intron 45.0%
AGGCTAATGAAACTATGGGC+TGG - chr7.2:52519812-52519831 MS.gene23231:CDS 45.0%
ATCTCATCTGTTGCTGCAAC+AGG - chr7.2:52523166-52523185 MS.gene23231:intron 45.0%
ATGATCCAGTTAGGGTGATG+TGG + chr7.2:52523783-52523802 None:intergenic 45.0%
ATGTGATTCTGCCATGGGTA+TGG - chr7.2:52522274-52522293 MS.gene23231:CDS 45.0%
CAGGTCATAACCTGTGAGAA+GGG + chr7.2:52523029-52523048 None:intergenic 45.0%
CATTGTCACCAATGCCAAAC+AGG - chr7.2:52523204-52523223 MS.gene23231:intron 45.0%
CGAAATTGAATGAGCCATGC+TGG + chr7.2:52523004-52523023 None:intergenic 45.0%
CGCATGACAACAACAAAGGA+TGG + chr7.2:52520753-52520772 None:intergenic 45.0%
CTCACAGGTTATGACCTGTT+TGG - chr7.2:52523031-52523050 MS.gene23231:intron 45.0%
CTGGTCATTCACACCTTGAA+TGG - chr7.2:52523386-52523405 MS.gene23231:intron 45.0%
GAAGAGCAGCTGCAATCTTA+TGG + chr7.2:52523427-52523446 None:intergenic 45.0%
GAAGTAAAGTGTGCGGAAAG+TGG - chr7.2:52522246-52522265 MS.gene23231:CDS 45.0%
GAGAACTAATACCTCCGCAT+CGG + chr7.2:52522159-52522178 None:intergenic 45.0%
GAGAACTACTTCCACCACAT+CGG + chr7.2:52522137-52522156 None:intergenic 45.0%
GAGAATGTCCTAAGCCTGTT+TGG + chr7.2:52523221-52523240 None:intergenic 45.0%
GCAGCCCAAGTAATAGTTAG+AGG + chr7.2:52521171-52521190 None:intergenic 45.0%
GCAGCGACATAGATGAGTAA+AGG + chr7.2:52519341-52519360 None:intergenic 45.0%
GGACGAAGTTCAAATCCCTT+CGG - chr7.2:52520509-52520528 MS.gene23231:intron 45.0%
GTAGCAACTTTGCATCATGC+TGG - chr7.2:52520359-52520378 MS.gene23231:intron 45.0%
TAGGGTGATGTGGTGCAAAT+TGG + chr7.2:52523773-52523792 None:intergenic 45.0%
TGACATGTTGTTGCATCGTG+AGG - chr7.2:52523502-52523521 MS.gene23231:intron 45.0%
TGATCTCACAACTGGATGGA+AGG - chr7.2:52521543-52521562 MS.gene23231:CDS 45.0%
TGCACGCATGACAACAACAA+AGG + chr7.2:52520757-52520776 None:intergenic 45.0%
TTGTGAAGTGATCTCCGATG+TGG - chr7.2:52522120-52522139 MS.gene23231:intron 45.0%
TTTACTCAATTCGGCCCACT+TGG - chr7.2:52519844-52519863 MS.gene23231:intron 45.0%
! AACTACGTATGCACTGACGA+AGG - chr7.2:52520833-52520852 MS.gene23231:intron 45.0%
! AATGTAGCATCGAGATCCCA+CGG - chr7.2:52523560-52523579 MS.gene23231:intron 45.0%
! ACACACATAAGTGGAGGTGT+CGG + chr7.2:52519440-52519459 None:intergenic 45.0%
! CTAACTTGTCCAAGCCAAGT+GGG + chr7.2:52519861-52519880 None:intergenic 45.0%
! GATCATCACTCTCTAGCTCA+TGG - chr7.2:52520143-52520162 MS.gene23231:intron 45.0%
! GGTATTAGTTCTCTGGTGAG+AGG - chr7.2:52522166-52522185 MS.gene23231:intron 45.0%
!! AAATGGATTGGCTTCACCTC+AGG + chr7.2:52519111-52519130 None:intergenic 45.0%
!! AACACCAACTGATTTGCAGG+TGG + chr7.2:52522932-52522951 None:intergenic 45.0%
!! AGGAACACCAACTGATTTGC+AGG + chr7.2:52522935-52522954 None:intergenic 45.0%
!! ATGCGGAGGTATTAGTTCTC+TGG - chr7.2:52522159-52522178 MS.gene23231:intron 45.0%
!! CGTATCACCACTTTTGGGAA+AGG - chr7.2:52523292-52523311 MS.gene23231:intron 45.0%
!! CGTGGAACACCGATTTCTTA+TGG - chr7.2:52520782-52520801 MS.gene23231:CDS 45.0%
!! GACAATTCATCAGCATTGGC+TGG + chr7.2:52523335-52523354 None:intergenic 45.0%
!! TGGATGGAAGGCATTTGCAA+AGG - chr7.2:52521555-52521574 MS.gene23231:intron 45.0%
!! TTGGCTTGGACAAGTTAGGT+CGG - chr7.2:52519863-52519882 MS.gene23231:intron 45.0%
AAGGGTTACCCTCCGAGAAA+TGG - chr7.2:52523717-52523736 MS.gene23231:intron 50.0%
ACCACCACCTGCAAATCAGT+TGG - chr7.2:52522925-52522944 MS.gene23231:CDS 50.0%
ACGGCCAACAACATCAACCT+AGG - chr7.2:52523579-52523598 MS.gene23231:intron 50.0%
ATCGCCGACCCAATACATGA+CGG + chr7.2:52522481-52522500 None:intergenic 50.0%
ATTTCTCGGAGGGTAACCCT+TGG + chr7.2:52523718-52523737 None:intergenic 50.0%
CAATTTCGAGCCCTTCTCAC+AGG - chr7.2:52523016-52523035 MS.gene23231:intron 50.0%
CACCAATGCCAAACAGGCTT+AGG - chr7.2:52523210-52523229 MS.gene23231:intron 50.0%
CTAAGACTTTGTCTGAGCCG+GGG + chr7.2:52523869-52523888 None:intergenic 50.0%
CTTCGTCCATCGACACATCA+TGG + chr7.2:52520497-52520516 None:intergenic 50.0%
GAATTGCCCAGCTCAAATGG+AGG - chr7.2:52520978-52520997 MS.gene23231:intron 50.0%
GACGTCCGGCCTAACAATTT+CGG + chr7.2:52519399-52519418 None:intergenic 50.0%
GGCTAGTGATGAAACTCCTG+AGG - chr7.2:52519092-52519111 MS.gene23231:CDS 50.0%
GTAGCGCACATAGACCAATC+TGG + chr7.2:52522393-52522412 None:intergenic 50.0%
GTCCTAAGCCTGTTTGGCAT+TGG + chr7.2:52523215-52523234 None:intergenic 50.0%
GTGGAAGTAGTTCTCCGATG+CGG - chr7.2:52522142-52522161 MS.gene23231:intron 50.0%
GTGGAGCCACACTCATACAA+TGG - chr7.2:52522296-52522315 MS.gene23231:intron 50.0%
GTGGGATCTCGATGCTACAT+TGG + chr7.2:52523561-52523580 None:intergenic 50.0%
GTGGGCCGAATTGAGTAAAC+AGG + chr7.2:52519843-52519862 None:intergenic 50.0%
TAGGACCCTCCATTTGAGCT+GGG + chr7.2:52520987-52521006 None:intergenic 50.0%
TCTTTCAGCAGCGGTATGAG+AGG + chr7.2:52523621-52523640 None:intergenic 50.0%
TGAAGTGATCTCCGATGTGG+TGG - chr7.2:52522123-52522142 MS.gene23231:intron 50.0%
TGATTCTGCCATGGGTATGG+TGG - chr7.2:52522277-52522296 MS.gene23231:CDS 50.0%
TGTCATGCGTGCATCATACG+TGG - chr7.2:52520764-52520783 MS.gene23231:intron 50.0%
TGTGGTCTGCCTCCATTTCT+CGG + chr7.2:52523732-52523751 None:intergenic 50.0%
TTACCGGGCCGTCATGTATT+GGG - chr7.2:52522470-52522489 MS.gene23231:intron 50.0%
TTAGGACCCTCCATTTGAGC+TGG + chr7.2:52520988-52521007 None:intergenic 50.0%
TTGCACCACATCACCCTAAC+TGG - chr7.2:52523775-52523794 MS.gene23231:intron 50.0%
! ACTTTGGCTGATTCCTACCC+CGG - chr7.2:52523849-52523868 MS.gene23231:CDS 50.0%
! ATTGGTGACAATGCCGAGGT+GGG + chr7.2:52523197-52523216 None:intergenic 50.0%
! CCTAACTTGTCCAAGCCAAG+TGG + chr7.2:52519862-52519881 None:intergenic 50.0%
! CGAGCAACTGTGTTAGCTTG+TGG + chr7.2:52523750-52523769 None:intergenic 50.0%
! GGCCTGCAAAGTACCTAATC+AGG - chr7.2:52521497-52521516 MS.gene23231:CDS 50.0%
! TGGCTTGGACAAGTTAGGTC+GGG - chr7.2:52519864-52519883 MS.gene23231:intron 50.0%
!! AACTGATTTGCAGGTGGTGG+TGG + chr7.2:52522926-52522945 None:intergenic 50.0%
!! ACACATAAGTGGAGGTGTCG+GGG + chr7.2:52519438-52519457 None:intergenic 50.0%
!! ACCAACTGATTTGCAGGTGG+TGG + chr7.2:52522929-52522948 None:intergenic 50.0%
!! AGGTTGATGTTGTTGGCCGT+GGG + chr7.2:52523579-52523598 None:intergenic 50.0%
!! CACACATAAGTGGAGGTGTC+GGG + chr7.2:52519439-52519458 None:intergenic 50.0%
!! CCACTTGGCTTGGACAAGTT+AGG - chr7.2:52519859-52519878 MS.gene23231:intron 50.0%
!! TAGGTTGATGTTGTTGGCCG+TGG + chr7.2:52523580-52523599 None:intergenic 50.0%
!!! GGGGACAACCGTTTTGAGAT+AGG + chr7.2:52522515-52522534 None:intergenic 50.0%
GAAGTAGTTCTCCGATGCGG+AGG - chr7.2:52522145-52522164 MS.gene23231:intron 55.0%
GGTTACCCTCCGAGAAATGG+AGG - chr7.2:52523720-52523739 MS.gene23231:intron 55.0%
GTCTGCCTCCATTTCTCGGA+GGG + chr7.2:52523728-52523747 None:intergenic 55.0%
GTTACCGGGCCGTCATGTAT+TGG - chr7.2:52522469-52522488 MS.gene23231:intron 55.0%
GTTAGGCCGGACGTCATGAT+CGG - chr7.2:52519404-52519423 MS.gene23231:CDS 55.0%
TCAATTCGGCCCACTTGGCT+TGG - chr7.2:52519849-52519868 MS.gene23231:intron 55.0%
TTAGGCCGGACGTCATGATC+GGG - chr7.2:52519405-52519424 MS.gene23231:CDS 55.0%
! CATGCTGGCAGAGAGTGCAA+AGG - chr7.2:52520374-52520393 MS.gene23231:intron 55.0%
! CATTGGTGACAATGCCGAGG+TGG + chr7.2:52523198-52523217 None:intergenic 55.0%
! GCAACAGGTGTTACCCACCT+CGG - chr7.2:52523181-52523200 MS.gene23231:intron 55.0%
!! TGATTTGCAGGTGGTGGTGG+TGG + chr7.2:52522923-52522942 None:intergenic 55.0%
!! TGGCATTGGTGACAATGCCG+AGG + chr7.2:52523201-52523220 None:intergenic 55.0%
AACTCCGCGAGATGCACAGG+AGG - chr7.2:52522344-52522363 MS.gene23231:intron 60.0%
CGAAACTCCGCGAGATGCAC+AGG - chr7.2:52522341-52522360 MS.gene23231:intron 60.0%
CGAACCCCGATCATGACGTC+CGG + chr7.2:52519413-52519432 None:intergenic 60.0%
CGACCCAATACATGACGGCC+CGG + chr7.2:52522476-52522495 None:intergenic 60.0%
CGGGCCGTCATGTATTGGGT+CGG - chr7.2:52522474-52522493 MS.gene23231:intron 60.0%
GACTTTGTCTGAGCCGGGGT+AGG + chr7.2:52523865-52523884 None:intergenic 60.0%
GGTCTGCCTCCATTTCTCGG+AGG + chr7.2:52523729-52523748 None:intergenic 60.0%
GTGCATCTCGCGGAGTTTCG+AGG + chr7.2:52522341-52522360 None:intergenic 60.0%
GTGTGGCTCCACCATACCCA+TGG + chr7.2:52522288-52522307 None:intergenic 60.0%
TAGGCCGGACGTCATGATCG+GGG - chr7.2:52519406-52519425 MS.gene23231:CDS 60.0%
!! TTTGCAGGTGGTGGTGGTGG+TGG + chr7.2:52522920-52522939 None:intergenic 60.0%
ACGGCCTCCTGTGCATCTCG+CGG + chr7.2:52522351-52522370 None:intergenic 65.0%
TGGGTCGGCGATGTGAGCTG+AGG - chr7.2:52522489-52522508 MS.gene23231:intron 65.0%
!! CAGGTGGTGGTGGTGGTGGT+GGG + chr7.2:52522916-52522935 None:intergenic 65.0%
!! GCAGGTGGTGGTGGTGGTGG+TGG + chr7.2:52522917-52522936 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 52519090 52523888 52519090 ID=MS.gene23231
chr7.2 mRNA 52519090 52523888 52519090 ID=MS.gene23231.t1;Parent=MS.gene23231
chr7.2 exon 52523805 52523888 52523805 ID=MS.gene23231.t1.exon1;Parent=MS.gene23231.t1
chr7.2 CDS 52523805 52523888 52523805 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52522583 52522982 52522583 ID=MS.gene23231.t1.exon2;Parent=MS.gene23231.t1
chr7.2 CDS 52522583 52522982 52522583 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52522175 52522296 52522175 ID=MS.gene23231.t1.exon3;Parent=MS.gene23231.t1
chr7.2 CDS 52522175 52522296 52522175 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52521278 52521566 52521278 ID=MS.gene23231.t1.exon4;Parent=MS.gene23231.t1
chr7.2 CDS 52521278 52521566 52521278 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52520771 52520850 52520771 ID=MS.gene23231.t1.exon5;Parent=MS.gene23231.t1
chr7.2 CDS 52520771 52520850 52520771 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52519941 52520034 52519941 ID=MS.gene23231.t1.exon6;Parent=MS.gene23231.t1
chr7.2 CDS 52519941 52520034 52519941 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52519730 52519840 52519730 ID=MS.gene23231.t1.exon7;Parent=MS.gene23231.t1
chr7.2 CDS 52519730 52519840 52519730 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52519378 52519594 52519378 ID=MS.gene23231.t1.exon8;Parent=MS.gene23231.t1
chr7.2 CDS 52519378 52519594 52519378 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
chr7.2 exon 52519090 52519258 52519090 ID=MS.gene23231.t1.exon9;Parent=MS.gene23231.t1
chr7.2 CDS 52519090 52519258 52519090 ID=cds.MS.gene23231.t1;Parent=MS.gene23231.t1
Gene Sequence

>MS.gene23231

ATGGCTAGTGATGAAACTCCTGAGGTGAAGCCAATCCATTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTGTAAGCTTTTTACTTAGATATTCTATTATTTTTCTTCTGATAATCTTGAGTTAGTTTCTTTGTTCAGGTAGTTTATATTGTTTGTATATCTTATAACATGATTACATTACTTTATTATGACACAAGATTTGTTGGTCATAGTTTGTGGGTTAGTAGCATAATTACCTTTACTCATCTATGTCGCTGCATGTCCTATAAGTCCTATCTCAAATAACAAATATGCCGAAATTGTTAGGCCGGACGTCATGATCGGGGTTCGAACCCCGACACCTCCACTTATGTGTGTGAGTTTATGATGGCTTTGTCATTTTGTCTATTTAAAAAAAAAAAAAAATGTCGCTACATGGCTTCATCGCCAATTTGAACTTTTTTTCCTTAATTTTTTATTTTAAAACCAAACCAGCAAGTAATTAACTTGGGTAAGATAGCATGTATCATGACATATTGGACTACCGAAATGGAAGGGCGATTGATATAAATGCTATCTAACAGGGGACTTATAATTAAGAAAAATGCACATGGTAAACTGCATATGAGCTTATATTTAGGGACAAATTTTTTTCCTCAAAAGGGGACTTGTAAATAAAAAGTCGAGTTTGGTCCACTAATTTTATGATGGACTAGACCACCAAATTTGTAGGCTAATGAAACTATGGGCTGGTGCAGCCTGTTTACTCAATTCGGCCCACTTGGCTTGGACAAGTTAGGTCGGGCGTCCTGATTAGAAAACTAAGTAATTTTTCTGATAAATGTGATTTAGGAGTCTCACGTTACTTAAAAAAGTACTATCATGCATACTAATTTGGTTTAATTAATCGATAGATGATGCCAAGAAAGTTTGTAGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAAAAGTGATGGAAAAATATGGTTTGAAAAAGGTTGGAAAGAATTTGCAGATCATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCTAAGAAATTCTCATTTTCTAGTACACATCTTTGAAAAAAGTGCCTTAGAGATAAATTATCCATTCCAAAGAGTTGCAGCTAAAAAGAGAAAAGCTAACTCCTCTTTTGAATTCCATCAACCACGTGAAATTGGAAGCAATAGCTGTGTTGAAGTTGAGAAATTGAATAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTGCAAAGGTATCAGATTTTGTGTCTTCATTGTCTCATCAAAGTTTCACAAGTTAACATAAATTATTAGCTTTTGTTCTCTTCAATACGTATTATCATTTTTCTTTCCATGATGTGTCGATGGACGAAGTTCAAATCCCTTCGGAACTATTGTAGAACAGCTATCAGGGAAACCAGCTAAAACTGTATGTCAATTCAACGTGGAAACGACATACATTTTTAGCAGGTTTCAATATATAGAAACTTGAAAGATGATATCATGAAATATCAGCCTTATTGTGTTCAAATTTTGCAGGGAAACAAGTGTTTACTGCTAAGAGAGTAACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTGGAACACCGATTTCTTATGGTAAGTTGCAAAGAAAGTTTGGTTGCTAAAACTACGTATGCACTGACGAAGGATAACTTTTAATACGCTTTGTGACTCGTTAATACATATTTTCTGATCATGATTAATACATAGTTTATGATTTCTTTCTCTTTTCATATTTCCCGTTGATACCAATTGGTTCTTGTTGAGAAAGAATTGCCCAGCTCAAATGGAGGGTCCTAACTCCTAAGAATTATTATTATCAAAGAAACAAAATGAACGAAATGATGGAAATTCTCATTGATTATTGAAGTGTTACATTTGTATTTATACAAGTTCTAGTGAGAGCTTTGTAACTAACTTCAACTAACAAATGAAGAACAAAGTACAAAGACAAAACTGCCCTCTAACTATTACTTGGGCTGCAAGCTATCTACTTTCTCTTGTTTTATTTTCTTCTATGTTTATTAATTATTCAATCAGATATTATCACAAATGTTTATTGGAATATTAGTATATATATTATAATGACAGTGATATTATGATTAGATTAGATAACTATGTAAGAAAATACACAATGTTAAGTACTCCAACAAGAACTTTCTAATTTTTATTCATTAACGTTTGTCTTTTCTTTTGATTGGCAGAATATACCAGTTAAGTTTGGTAAGACACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTAAAGGACTACAGTTTGATCTCACAACTGGATGGAAGGCATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTACCTTCATTGTTCACATCTTTAGAGAGACAGACAAAGACAGCACAAATTGTTCTACATCTCAAAGTAGGCTAGGAGCAATTGATGTTTAGTTTTCATTTCAAATTATTTAAAATCTTAATATGACAAATAAATTTATTCTTCTCGTATGCAGAATTTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAAAGAAAAGGAATGGGAAATCATTACAAATCTAAAATCAAATCACTAATAGTCTACTTCCTGTAACTAAGAAGCTTAAAAAATGTTGCATGTATCTGGTGTATGTTCAAGGAATACTAGTCTACATCCTGTAACTAAGAAGTTCAACTTTTATTTTGCATTTGTAGACATTACTTTATGCTATTTTCTTTAATGAGTTATTATGCTTCTTTGGCTAATATATAAACCATGCTTAATAATTCATATATGATTGATATAGAGTAGACCAGAACGATCAATAACCGATGAAATTGCTCTTGTGAAGTGATCTCCGATGTGGTGGAAGTAGTTCTCCGATGCGGAGGTATTAGTTCTCTGGTGAGAGGAAATAAATCAGCAAAATTGGTGAGAAATACAACACTCAATTTAGTGACAGAAATGAGGAAGTAAAGTGTGCGGAAAGTGGTGAAAATGTGATTCTGCCATGGGTATGGTGGAGCCACACTCATACAATGGAGCATAATTATAACTAACTCCTCGAAACTCCGCGAGATGCACAGGAGGCCGTTATAGATCATATGAACGGTCCAGATTGGTCTATGTGCGCTACTGTGTTGTAAAGCGTACATGATTTCCTCTATTTTTCCTGGACGATGAGGATTAAGAGTTACCGGGCCGTCATGTATTGGGTCGGCGATGTGAGCTGAGGCCTATCTCAAAACGGTTGTCCCCCAAGCCCTTACTATTTTTATGACGTAAGTAATAGCATATACGCATCAATATGCTACAGTTGTGCACTCATAATAGAATATTTTCTATTCATTGCATTGATCTCAACATTCATATCATAATATTTGACATTCATTACATTGACCACAATTGGTGATTGTCTGTTAGTATCTATAATATTAGGAAGTATTATTAATTTCCTTTCAATCACACTAAATGGTGATTGTCTGCTAGTATCTATATAATGTACCTTGTATCGCATATTCATATCAATACAATAAGTTGAATTACTTTATGGTTTTCAGAGCTCTTTAAGCTTAACAACATTTTTTTTTGATCCCAAAAAATGGCCATACGCACATCAAATGCTTCTGTTATCAACCCACCACCACCACCACCACCTGCAAATCAGTTGGTGTTCCTCAATCTTAGCTCTCAGATATACATCAAACTTGATGGCGAAAATTATCCAGCATGGCTCATTCAATTTCGAGCCCTTCTCACAGGTTATGACCTGTTTGGTTATGTTGATGACACTAAACCATGTCCTTCCAGAACTCTGCAAAATGCATCAACCATAAATCTTGATTACACTCACTAGATCAGGCAAGATTAACTTATCCTTCATGTCATCATCTCATCTGTTGCTGCAACAGGTGTTACCCACCTCGGCATTGTCACCAATGCCAAACAGGCTTAGGACATTCTCAAAACCATGTATGCTGGAAAATCAAGGATCCACATCATGACTTTTAAGCAACGTATCACCACTTTTGGGAAAGGAACTCAATCAATGGATGCCAGCCAATGCTGATGAATTGTCTATTGTTGACAATCCCCTTTATTCAACAGATCTGGTCATTCACACCTTGAATGGTCTCACAACTGAATACCATAAGATTGCAGCTGCTCTTCGAAGAAGAGAAAGTCCCATTGAATTTGCTGAACTCCATGAGAAACTCATGGAATTTGACATGTTGTTGCATCGTGAGGAACCAACTATGTCATATTCTTTAGTTGTTACTGCCAATGTAGCATCGAGATCCCACGGCCAACAACATCAACCTAGGTACAATGGAAATCATACCTCTCATACCGCTGCTGAAAGAAATAAACCAAAGGTTGTATTATAATACTGCGACAGACCTAATCATACAAGATACAACAAGAAATTGCTTCAAAACCAAGGGTTACCCTCCGAGAAATGGAGGCAGACCACAAGCTAACACAGTTGCTCGCCAATTTGCACCACATCACCCTAACTGGATCATTGACACATGAGCATCTCATCACATTGCTCAAGATTTGGAGCATCTCACTTTGGCTGATTCCTACCCCGGCTCAGACAAAGTCTTAG
Protein sequence

>MS.gene23231.t1

MASDETPEVKPIHFFKIILAQNLHEGKLMMPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFADHHSLAHGHLLLFKYLRNSHFLVHIFEKSALEINYPFQRVAAKKRKANSSFEFHQPREIGSNSCVEVEKLNKVATLHHAGRECKGKQVFTAKRVTALERAQSFKTCNPSFVVVMRASYVEHRFLMNIPVKFGKTHFDLDKKRGDIYLLLNEGIWPAKYLIRMTLKGLQFDLTTGWKAFAKDNNLKVGDVCKFELISSTILTFIVHIFRETDKDSTNCSTSQMISDVVEVVLRCGGISSLVRGNKSAKLLVFLNLSSQIYIKLDGENYPAWLIQFRALLTGKINLSFMSSSHLLLQQVLPTSALSPMPNRLRTFSKPYLVIHTLNGLTTEYHKIAAALRRRESPIEFAELHEKLMEFDMLLHREEPTMSYSLVVTANVASRSHGQQHQPRVTLREMEADHKLTQLLANLHHITLTGSLTHEHLITLLKIWSISLWLIPTPAQTKS