Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23249.t1 | AES78894.2 | 76.8 | 293 | 19 | 1 | 1 | 244 | 1 | 293 | 3.30E-125 | 458 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23249.t1 | Q8L3W1 | 44.7 | 103 | 57 | 0 | 6 | 108 | 2 | 104 | 4.7e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23249.t1 | G7KVW7 | 76.8 | 293 | 19 | 1 | 1 | 244 | 1 | 293 | 2.4e-125 | 458.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23249.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23249.t1 | MTR_7g050720 | 76.792 | 293 | 19 | 1 | 1 | 244 | 1 | 293 | 3.30e-162 | 454 |
| MS.gene23249.t1 | MTR_3g098790 | 52.174 | 322 | 105 | 6 | 1 | 276 | 1 | 319 | 1.58e-100 | 298 |
| MS.gene23249.t1 | MTR_7g050580 | 50.883 | 283 | 108 | 5 | 1 | 255 | 1 | 280 | 7.56e-92 | 275 |
| MS.gene23249.t1 | MTR_7g050560 | 53.383 | 266 | 94 | 6 | 4 | 243 | 7 | 268 | 1.59e-88 | 266 |
| MS.gene23249.t1 | MTR_7g050710 | 51.049 | 286 | 97 | 5 | 4 | 248 | 7 | 290 | 3.37e-87 | 263 |
| MS.gene23249.t1 | MTR_7g050590 | 52.692 | 260 | 80 | 4 | 25 | 243 | 1 | 258 | 2.19e-83 | 253 |
| MS.gene23249.t1 | MTR_7g050640 | 75.221 | 113 | 25 | 1 | 1 | 110 | 1 | 113 | 1.18e-52 | 168 |
| MS.gene23249.t1 | MTR_8g103940 | 32.056 | 287 | 128 | 9 | 10 | 244 | 39 | 310 | 7.18e-36 | 134 |
| MS.gene23249.t1 | MTR_1g108780 | 30.249 | 281 | 128 | 8 | 26 | 253 | 13 | 278 | 1.28e-32 | 125 |
| MS.gene23249.t1 | MTR_3g061330 | 32.365 | 241 | 120 | 6 | 7 | 207 | 9 | 246 | 9.74e-30 | 113 |
| MS.gene23249.t1 | MTR_3g061320 | 30.303 | 264 | 145 | 9 | 7 | 244 | 9 | 259 | 3.49e-29 | 112 |
| MS.gene23249.t1 | MTR_5g044670 | 29.210 | 291 | 152 | 9 | 10 | 257 | 16 | 295 | 7.48e-28 | 110 |
| MS.gene23249.t1 | MTR_1g035460 | 53.488 | 86 | 40 | 0 | 25 | 110 | 1 | 86 | 5.52e-27 | 108 |
| MS.gene23249.t1 | MTR_1g035460 | 40.426 | 94 | 42 | 3 | 151 | 244 | 187 | 266 | 2.65e-11 | 63.9 |
| MS.gene23249.t1 | MTR_3g061340 | 29.070 | 258 | 151 | 7 | 7 | 244 | 9 | 254 | 1.78e-25 | 102 |
| MS.gene23249.t1 | MTR_3g061290 | 48.039 | 102 | 51 | 1 | 7 | 108 | 9 | 108 | 2.24e-25 | 100 |
| MS.gene23249.t1 | MTR_3g061370 | 28.832 | 274 | 153 | 7 | 10 | 253 | 9 | 270 | 1.80e-24 | 100 |
| MS.gene23249.t1 | MTR_3g061310 | 28.625 | 269 | 145 | 9 | 7 | 242 | 9 | 263 | 2.20e-24 | 100 |
| MS.gene23249.t1 | MTR_6g043890 | 27.217 | 327 | 182 | 10 | 9 | 288 | 14 | 331 | 6.72e-24 | 99.8 |
| MS.gene23249.t1 | MTR_1g050845 | 30.677 | 251 | 151 | 7 | 7 | 244 | 6 | 246 | 5.04e-23 | 99.4 |
| MS.gene23249.t1 | MTR_3g061350 | 26.241 | 282 | 156 | 8 | 7 | 253 | 9 | 273 | 6.70e-23 | 95.9 |
| MS.gene23249.t1 | MTR_1g035620 | 28.986 | 276 | 163 | 9 | 7 | 258 | 6 | 272 | 2.68e-22 | 96.3 |
| MS.gene23249.t1 | MTR_4g068320 | 41.818 | 110 | 62 | 1 | 5 | 112 | 1 | 110 | 5.12e-22 | 95.5 |
| MS.gene23249.t1 | MTR_4g068320 | 30.539 | 167 | 92 | 5 | 93 | 244 | 210 | 367 | 6.51e-11 | 62.8 |
| MS.gene23249.t1 | MTR_4g119990 | 28.421 | 285 | 147 | 8 | 9 | 244 | 14 | 290 | 1.28e-21 | 94.0 |
| MS.gene23249.t1 | MTR_1g034240 | 40.000 | 130 | 75 | 2 | 6 | 134 | 3 | 130 | 1.58e-21 | 94.0 |
| MS.gene23249.t1 | MTR_3g005480 | 26.778 | 239 | 153 | 6 | 9 | 244 | 20 | 239 | 3.98e-21 | 90.9 |
| MS.gene23249.t1 | MTR_3g005490 | 26.778 | 239 | 152 | 7 | 9 | 244 | 20 | 238 | 7.50e-21 | 90.1 |
| MS.gene23249.t1 | MTR_1g035640 | 31.022 | 274 | 144 | 11 | 1 | 244 | 1 | 259 | 1.16e-20 | 92.0 |
| MS.gene23249.t1 | MTR_5g070440 | 36.893 | 103 | 65 | 0 | 9 | 111 | 20 | 122 | 2.99e-20 | 88.6 |
| MS.gene23249.t1 | MTR_3g005460 | 29.282 | 181 | 104 | 3 | 9 | 189 | 24 | 180 | 6.94e-20 | 89.7 |
| MS.gene23249.t1 | MTR_3g005460 | 27.451 | 255 | 147 | 8 | 9 | 244 | 261 | 496 | 4.13e-17 | 81.6 |
| MS.gene23249.t1 | MTR_3g005495 | 29.500 | 200 | 117 | 5 | 9 | 206 | 242 | 419 | 1.83e-19 | 88.6 |
| MS.gene23249.t1 | MTR_3g005495 | 25.000 | 244 | 145 | 6 | 26 | 269 | 29 | 234 | 2.64e-18 | 85.1 |
| MS.gene23249.t1 | MTR_3g005420 | 28.992 | 238 | 151 | 6 | 9 | 241 | 288 | 512 | 2.47e-19 | 88.2 |
| MS.gene23249.t1 | MTR_3g005420 | 24.268 | 239 | 148 | 7 | 9 | 245 | 39 | 246 | 6.10e-13 | 69.3 |
| MS.gene23249.t1 | MTR_1g035480 | 37.398 | 123 | 74 | 2 | 9 | 131 | 16 | 135 | 5.46e-19 | 82.8 |
| MS.gene23249.t1 | MTR_1g035570 | 28.044 | 271 | 148 | 9 | 19 | 252 | 14 | 274 | 2.14e-18 | 85.1 |
| MS.gene23249.t1 | MTR_1g033740 | 36.585 | 123 | 75 | 2 | 9 | 131 | 21 | 140 | 3.48e-18 | 81.3 |
| MS.gene23249.t1 | MTR_1g035650 | 39.423 | 104 | 61 | 1 | 5 | 108 | 4 | 105 | 3.63e-18 | 81.3 |
| MS.gene23249.t1 | MTR_3g061220 | 40.196 | 102 | 46 | 2 | 7 | 108 | 9 | 95 | 1.27e-17 | 77.4 |
| MS.gene23249.t1 | MTR_1g034210 | 41.053 | 95 | 56 | 0 | 10 | 104 | 7 | 101 | 1.25e-16 | 79.0 |
| MS.gene23249.t1 | MTR_1g034210 | 41.053 | 95 | 56 | 0 | 10 | 104 | 7 | 101 | 1.61e-16 | 79.3 |
| MS.gene23249.t1 | MTR_6g061070 | 27.891 | 294 | 145 | 11 | 9 | 244 | 17 | 301 | 7.53e-16 | 77.8 |
| MS.gene23249.t1 | MTR_3g005440 | 34.259 | 108 | 68 | 1 | 24 | 131 | 34 | 138 | 8.12e-16 | 77.4 |
| MS.gene23249.t1 | MTR_3g005440 | 32.800 | 125 | 84 | 0 | 9 | 133 | 241 | 365 | 2.32e-14 | 73.2 |
| MS.gene23249.t1 | MTR_1g035440 | 38.462 | 104 | 63 | 1 | 9 | 111 | 14 | 117 | 1.33e-15 | 75.1 |
| MS.gene23249.t1 | MTR_1g021435 | 22.840 | 324 | 165 | 6 | 3 | 244 | 15 | 335 | 2.61e-15 | 75.9 |
| MS.gene23249.t1 | MTR_1g021360 | 24.904 | 261 | 151 | 5 | 23 | 244 | 195 | 449 | 5.64e-15 | 75.1 |
| MS.gene23249.t1 | MTR_1g035500 | 33.333 | 123 | 79 | 2 | 9 | 131 | 24 | 143 | 1.17e-14 | 71.2 |
| MS.gene23249.t1 | MTR_1g021440 | 37.755 | 98 | 60 | 1 | 3 | 100 | 16 | 112 | 6.00e-14 | 70.9 |
| MS.gene23249.t1 | MTR_1g021440 | 37.755 | 98 | 60 | 1 | 3 | 100 | 16 | 112 | 6.51e-14 | 71.2 |
| MS.gene23249.t1 | MTR_1g035510 | 38.318 | 107 | 63 | 2 | 25 | 131 | 1 | 104 | 8.95e-14 | 69.7 |
| MS.gene23249.t1 | MTR_1g021440 | 37.755 | 98 | 60 | 1 | 3 | 100 | 16 | 112 | 1.16e-13 | 70.9 |
| MS.gene23249.t1 | MTR_1g021440 | 37.755 | 98 | 60 | 1 | 3 | 100 | 16 | 112 | 1.36e-13 | 70.9 |
| MS.gene23249.t1 | MTR_1g035520 | 40.952 | 105 | 52 | 3 | 8 | 112 | 77 | 171 | 1.39e-13 | 70.9 |
| MS.gene23249.t1 | MTR_1g021400 | 34.375 | 96 | 63 | 0 | 9 | 104 | 29 | 124 | 2.21e-13 | 70.1 |
| MS.gene23249.t1 | MTR_1g035470 | 40.625 | 96 | 54 | 2 | 25 | 120 | 1 | 93 | 4.09e-13 | 65.9 |
| MS.gene23249.t1 | MTR_1g021320 | 37.363 | 91 | 57 | 0 | 9 | 99 | 24 | 114 | 4.56e-13 | 69.7 |
| MS.gene23249.t1 | MTR_1g021320 | 29.839 | 124 | 84 | 2 | 9 | 131 | 183 | 304 | 1.89e-12 | 67.8 |
| MS.gene23249.t1 | MTR_3g005420 | 24.268 | 239 | 148 | 7 | 9 | 245 | 20 | 227 | 6.04e-13 | 69.3 |
| MS.gene23249.t1 | MTR_1g021410 | 39.506 | 81 | 49 | 0 | 21 | 101 | 33 | 113 | 1.13e-12 | 67.8 |
| MS.gene23249.t1 | MTR_1g021350 | 34.043 | 94 | 62 | 0 | 11 | 104 | 22 | 115 | 3.24e-12 | 66.6 |
| MS.gene23249.t1 | MTR_1g021270 | 33.981 | 103 | 67 | 1 | 9 | 111 | 15 | 116 | 3.60e-12 | 67.0 |
| MS.gene23249.t1 | MTR_1g021290 | 29.825 | 114 | 77 | 1 | 24 | 134 | 169 | 282 | 4.86e-12 | 65.9 |
| MS.gene23249.t1 | MTR_1g021290 | 32.292 | 96 | 64 | 1 | 9 | 104 | 27 | 121 | 2.37e-11 | 63.9 |
| MS.gene23249.t1 | MTR_1g021380 | 34.021 | 97 | 63 | 1 | 3 | 99 | 15 | 110 | 2.58e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23249.t1 | AT3G18990 | 44.660 | 103 | 57 | 0 | 6 | 108 | 2 | 104 | 8.07e-23 | 96.7 |
| MS.gene23249.t1 | AT3G18960 | 40.000 | 110 | 66 | 0 | 4 | 113 | 24 | 133 | 1.26e-22 | 93.2 |
| MS.gene23249.t1 | AT3G18990 | 44.660 | 103 | 57 | 0 | 6 | 108 | 2 | 104 | 1.32e-22 | 96.7 |
| MS.gene23249.t1 | AT3G18960 | 40.000 | 110 | 66 | 0 | 4 | 113 | 24 | 133 | 1.47e-22 | 93.2 |
| MS.gene23249.t1 | AT4G01580 | 36.975 | 119 | 75 | 0 | 4 | 122 | 24 | 142 | 2.72e-22 | 92.0 |
| MS.gene23249.t1 | AT1G49475 | 38.889 | 108 | 65 | 1 | 10 | 117 | 34 | 140 | 2.78e-20 | 86.7 |
| MS.gene23249.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 26 | 113 | 9 | 96 | 4.29e-19 | 83.2 |
| MS.gene23249.t1 | AT4G31640 | 25.843 | 267 | 162 | 11 | 9 | 266 | 13 | 252 | 1.43e-13 | 70.5 |
| MS.gene23249.t1 | AT4G33280 | 37.624 | 101 | 59 | 2 | 8 | 104 | 18 | 118 | 2.90e-11 | 63.2 |
| MS.gene23249.t1 | AT4G33280 | 37.624 | 101 | 59 | 2 | 8 | 104 | 18 | 118 | 3.58e-11 | 63.5 |
| MS.gene23249.t1 | AT4G33280 | 37.624 | 101 | 59 | 2 | 8 | 104 | 18 | 118 | 5.23e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATTTTAATTGTAAA+TGG | + | 51863:8146-8165 | MS.gene23249:intergenic | 10.0% |
| !! | ATAAATTTATTTGACACATT+AGG | + | 51863:10057-10076 | MS.gene23249:intergenic | 15.0% |
| !! | ATTAAACCATATGAATATAA+TGG | + | 51863:8171-8190 | MS.gene23249:intergenic | 15.0% |
| !! | TATAAAAGAAATAGAAACAT+CGG | + | 51863:10402-10421 | MS.gene23249:intergenic | 15.0% |
| !!! | ATTTCTAATCCTTTTTATTT+TGG | - | 51863:9377-9396 | MS.gene23249:intron | 15.0% |
| !!! | ATTTTTGTTTTGAAGAAAAT+TGG | - | 51863:9427-9446 | MS.gene23249:intron | 15.0% |
| !!! | TTTCTAATCCTTTTTATTTT+GGG | - | 51863:9378-9397 | MS.gene23249:intron | 15.0% |
| !!! | TTTTTTTAGTCAAATATGTT+TGG | - | 51863:9258-9277 | MS.gene23249:intron | 15.0% |
| !! | AAAAAAAAAAGGTAAATGAG+TGG | + | 51863:8078-8097 | MS.gene23249:intergenic | 20.0% |
| !! | AAAAAAAAAGGTAAATGAGT+GGG | + | 51863:8077-8096 | MS.gene23249:intergenic | 20.0% |
| !! | ACATATGATCTTGAAAAAAT+GGG | + | 51863:8019-8038 | MS.gene23249:intergenic | 20.0% |
| !! | AGAAAAACAACAAAGTTTAT+AGG | + | 51863:10357-10376 | MS.gene23249:intergenic | 20.0% |
| !! | ATCAATGAAAATTATAGCTT+AGG | - | 51863:8837-8856 | MS.gene23249:intron | 20.0% |
| !! | ATTGGTTAAGTTTCAAATTA+TGG | - | 51863:8769-8788 | MS.gene23249:CDS | 20.0% |
| !! | ATTTACTTTCACTTTATGAT+TGG | - | 51863:8751-8770 | MS.gene23249:CDS | 20.0% |
| !! | CAAAAGCTTGAAAAAAAAAA+AGG | + | 51863:8089-8108 | MS.gene23249:intergenic | 20.0% |
| !! | CTAGTAATAATCTAATCATT+TGG | + | 51863:10252-10271 | MS.gene23249:intergenic | 20.0% |
| !! | GGTCTATAAATAATGAAAAA+TGG | - | 51863:9399-9418 | MS.gene23249:intron | 20.0% |
| !! | TCAATGAAAATTATAGCTTA+GGG | - | 51863:8838-8857 | MS.gene23249:intron | 20.0% |
| !! | TTGTTTCCATTATATTCATA+TGG | - | 51863:8162-8181 | MS.gene23249:intron | 20.0% |
| !! | TTTATAGACCCAAAATAAAA+AGG | + | 51863:9389-9408 | MS.gene23249:intergenic | 20.0% |
| !! | TTTGATCAGAGATATTTATA+GGG | + | 51863:9285-9304 | MS.gene23249:intergenic | 20.0% |
| !!! | AAGGTCATAGATTTTTTTAA+TGG | - | 51863:9028-9047 | MS.gene23249:intron | 20.0% |
| !!! | AATTTGGTAATTTGTTATAG+TGG | + | 51863:9209-9228 | MS.gene23249:intergenic | 20.0% |
| !!! | GAAAAATTTGAAATATACTC+AGG | - | 51863:9840-9859 | MS.gene23249:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | - | 51863:8298-8317 | MS.gene23249:intron | 20.0% |
| !!! | TAGATTTTTTTAATGGATGA+AGG | - | 51863:9035-9054 | MS.gene23249:intron | 20.0% |
| !!! | TTAGTCCAAACAATTTTATA+CGG | - | 51863:9307-9326 | MS.gene23249:intron | 20.0% |
| !!! | TTTTGATCAGAGATATTTAT+AGG | + | 51863:9286-9305 | MS.gene23249:intergenic | 20.0% |
| ! | AAAAGACACTTATTAGGTTT+AGG | - | 51863:9729-9748 | MS.gene23249:intron | 25.0% |
| ! | AAGTATCATTCTTTATCTCA+AGG | - | 51863:8348-8367 | MS.gene23249:intron | 25.0% |
| ! | AGTATCAGTAAATACATTGT+CGG | + | 51863:9652-9671 | MS.gene23249:intergenic | 25.0% |
| ! | ATGATCATACCTTGAAATAT+TGG | + | 51863:10007-10026 | MS.gene23249:intergenic | 25.0% |
| ! | CACATATGATCTTGAAAAAA+TGG | + | 51863:8020-8039 | MS.gene23249:intergenic | 25.0% |
| ! | CTAGTCTAATAACTAAGAAT+TGG | - | 51863:10268-10287 | MS.gene23249:CDS | 25.0% |
| ! | GAATGAAAAGCTAATAACAT+AGG | + | 51863:8728-8747 | MS.gene23249:intergenic | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | - | 51863:8309-8328 | MS.gene23249:intron | 25.0% |
| ! | TAAGTCCGTATAAAATTGTT+TGG | + | 51863:9315-9334 | MS.gene23249:intergenic | 25.0% |
| ! | TGAATTTGTCCAATATTTCA+AGG | - | 51863:9995-10014 | MS.gene23249:CDS | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | - | 51863:8308-8327 | MS.gene23249:intron | 25.0% |
| ! | TTTGGTAAAAGACACTTATT+AGG | - | 51863:9723-9742 | MS.gene23249:intron | 25.0% |
| !! | AATATTTTACACTGTCAACA+AGG | - | 51863:9534-9553 | MS.gene23249:CDS | 25.0% |
| !! | ATTCATCTTAGGTTGTTAAA+TGG | - | 51863:9768-9787 | MS.gene23249:intron | 25.0% |
| !! | CAAATTTTACCCATTAAGTA+GGG | - | 51863:9223-9242 | MS.gene23249:intron | 25.0% |
| !! | CATATTGACAAAAAGTGTAA+AGG | - | 51863:8648-8667 | MS.gene23249:CDS | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | - | 51863:8288-8307 | MS.gene23249:intron | 25.0% |
| !! | TTCATCTTAGGTTGTTAAAT+GGG | - | 51863:9769-9788 | MS.gene23249:intron | 25.0% |
| !!! | ACAACTATTTTGCTTTTCTT+TGG | - | 51863:10295-10314 | MS.gene23249:CDS | 25.0% |
| !!! | AGAACATTTTTGAAACTCTT+TGG | + | 51863:10181-10200 | MS.gene23249:intergenic | 25.0% |
| !!! | ATGAAGGTCATTCTTTTTTT+GGG | - | 51863:9051-9070 | MS.gene23249:intron | 25.0% |
| !!! | TTGTTATAGTGGTTTTTCAA+GGG | + | 51863:9198-9217 | MS.gene23249:intergenic | 25.0% |
| !!! | TTTGTTATAGTGGTTTTTCA+AGG | + | 51863:9199-9218 | MS.gene23249:intergenic | 25.0% |
| AAATATGGTTTCAAAAGGGT+TGG | - | 51863:8313-8332 | MS.gene23249:intron | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | 51863:8210-8229 | MS.gene23249:intron | 30.0% | |
| ATACTATTGACCCTACTTAA+TGG | + | 51863:9236-9255 | MS.gene23249:intergenic | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | - | 51863:8252-8271 | MS.gene23249:intron | 30.0% | |
| ATGATCTTGAAAAAATGGGA+TGG | + | 51863:8015-8034 | MS.gene23249:intergenic | 30.0% | |
| ATTAGGAAAGGCAATACAAA+AGG | - | 51863:9816-9835 | MS.gene23249:intron | 30.0% | |
| ATTTCTCCACAAACTTTCTT+GGG | + | 51863:8209-8228 | MS.gene23249:intergenic | 30.0% | |
| CATATTTGAAAAGCAGAAGA+TGG | + | 51863:8374-8393 | MS.gene23249:intergenic | 30.0% | |
| CTTCATTGTTCACATCTTTA+GGG | - | 51863:9950-9969 | MS.gene23249:intron | 30.0% | |
| TAATGTTGGGAAATTGGAAA+AGG | - | 51863:8611-8630 | MS.gene23249:intron | 30.0% | |
| TACTATTGACCCTACTTAAT+GGG | + | 51863:9235-9254 | MS.gene23249:intergenic | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | + | 51863:8210-8229 | MS.gene23249:intergenic | 30.0% | |
| TCTTCCAAATCTTCATCATT+CGG | + | 51863:8510-8529 | MS.gene23249:intergenic | 30.0% | |
| TGCAAAATCAACACACTAAA+AGG | - | 51863:10089-10108 | MS.gene23249:CDS | 30.0% | |
| TTGAAATATACTCAGGTGAA+TGG | - | 51863:9847-9866 | MS.gene23249:intron | 30.0% | |
| TTTGATCAACCTTGTGAAAT+TGG | - | 51863:8573-8592 | MS.gene23249:intron | 30.0% | |
| ! | CAAACAAAGGTTTTGCTTAA+AGG | - | 51863:9009-9028 | MS.gene23249:intron | 30.0% |
| ! | CAGATTTGTGGTATTTTGTA+AGG | - | 51863:9338-9357 | MS.gene23249:intron | 30.0% |
| ! | CCAAATTTTACCCATTAAGT+AGG | - | 51863:9222-9241 | MS.gene23249:intron | 30.0% |
| ! | CCTACTTAATGGGTAAAATT+TGG | + | 51863:9225-9244 | MS.gene23249:intergenic | 30.0% |
| !! | ATTTTGGGTGGAACAATTTT+TGG | + | 51863:9148-9167 | MS.gene23249:intergenic | 30.0% |
| !! | CATCTTCTGCTTTTCAAATA+TGG | - | 51863:8372-8391 | MS.gene23249:intron | 30.0% |
| !!! | GAAAGGGTATTTTATCTCTA+AGG | + | 51863:8439-8458 | MS.gene23249:intergenic | 30.0% |
| !!! | GAGCTATTTTGGAATATAGA+AGG | - | 51863:10116-10135 | MS.gene23249:CDS | 30.0% |
| !!! | GATGAAGGTCATTCTTTTTT+TGG | - | 51863:9050-9069 | MS.gene23249:intron | 30.0% |
| AAAGAAAACCAACACAGAGA+CGG | - | 51863:10428-10447 | MS.gene23249:intron | 35.0% | |
| AAGGTAAGTATAGTGCTAGT+AGG | + | 51863:9933-9952 | MS.gene23249:intergenic | 35.0% | |
| AATCAACACACTAAAAGGAG+TGG | - | 51863:10094-10113 | MS.gene23249:CDS | 35.0% | |
| AGCAAGGAGATATTCATCTT+AGG | - | 51863:9757-9776 | MS.gene23249:intron | 35.0% | |
| AGCAATAGCTGTGTTAATGT+TGG | - | 51863:8597-8616 | MS.gene23249:intron | 35.0% | |
| ATCTTGAAAAAATGGGATGG+AGG | + | 51863:8012-8031 | MS.gene23249:intergenic | 35.0% | |
| CCTAAAGATGTGAACAATGA+AGG | + | 51863:9952-9971 | MS.gene23249:intergenic | 35.0% | |
| CCTTCATTGTTCACATCTTT+AGG | - | 51863:9949-9968 | MS.gene23249:intron | 35.0% | |
| CTATTGCTTCCAATTTCACA+AGG | + | 51863:8585-8604 | MS.gene23249:intergenic | 35.0% | |
| CTGTGTTAATGTTGGGAAAT+TGG | - | 51863:8605-8624 | MS.gene23249:intron | 35.0% | |
| GAAGACAACAACTTGAAAGT+TGG | - | 51863:9882-9901 | MS.gene23249:intron | 35.0% | |
| GAAGATGTGCACATGAAAAT+GGG | + | 51863:8406-8425 | MS.gene23249:intergenic | 35.0% | |
| GCAATAGCTGTGTTAATGTT+GGG | - | 51863:8598-8617 | MS.gene23249:intron | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | + | 51863:8050-8069 | MS.gene23249:intergenic | 35.0% | |
| TTAGGTTTAGGCAAAAAGCA+AGG | - | 51863:9741-9760 | MS.gene23249:intron | 35.0% | |
| TTCCTAATTAGATACCTTGC+AGG | + | 51863:9804-9823 | MS.gene23249:intergenic | 35.0% | |
| TTGAAACTCTTTGGTTGTGA+TGG | + | 51863:10172-10191 | MS.gene23249:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | 51863:8216-8235 | MS.gene23249:intron | 35.0% | |
| ! | GAATTTTGCAGGAAAGCAAT+TGG | - | 51863:8868-8887 | MS.gene23249:intron | 35.0% |
| ! | GCAAGGTATCTAATTAGGAA+AGG | - | 51863:9804-9823 | MS.gene23249:intron | 35.0% |
| ! | GTGGTATTTTGTAAGGAGTA+AGG | - | 51863:9345-9364 | MS.gene23249:intron | 35.0% |
| ! | TAAAAGGAGTGGAGCTATTT+TGG | - | 51863:10105-10124 | MS.gene23249:CDS | 35.0% |
| ! | TGTCTTTTACCAAACTCACT+TGG | + | 51863:9717-9736 | MS.gene23249:intergenic | 35.0% |
| !! | TTTTCAAGGGTGAATGATTC+AGG | + | 51863:9185-9204 | MS.gene23249:intergenic | 35.0% |
| !!! | CTTTTTTTGGGTTAATCCTC+CGG | - | 51863:9063-9082 | MS.gene23249:intron | 35.0% |
| !!! | TAGTGTGTTGATTTTGCACA+AGG | + | 51863:10087-10106 | MS.gene23249:intergenic | 35.0% |
| ACCTCCGAATGATGAAGATT+TGG | - | 51863:8503-8522 | MS.gene23249:intron | 40.0% | |
| ACGGACTTAACTCAGATTTG+TGG | - | 51863:9326-9345 | MS.gene23249:intron | 40.0% | |
| AGGTTTATTGCCTAGATCGT+TGG | + | 51863:8487-8506 | MS.gene23249:intergenic | 40.0% | |
| ATCTGGTAAGCTGCAAACAA+AGG | - | 51863:8996-9015 | MS.gene23249:intron | 40.0% | |
| ATTCCATCAAGTGAAGCTCA+GGG | + | 51863:10328-10347 | MS.gene23249:intergenic | 40.0% | |
| CAAGCAGCATCAATGTATGA+TGG | + | 51863:8974-8993 | MS.gene23249:intergenic | 40.0% | |
| CAGTGTATACCAAGTGAGTT+TGG | - | 51863:9705-9724 | MS.gene23249:intron | 40.0% | |
| CCAAAGAGTTGAAGCCAAAA+GGG | - | 51863:8458-8477 | MS.gene23249:intron | 40.0% | |
| CGAAGATGTGCACATGAAAA+TGG | + | 51863:8407-8426 | MS.gene23249:intergenic | 40.0% | |
| GATGATCCCAAGAAAGTTTG+TGG | - | 51863:8200-8219 | MS.gene23249:intron | 40.0% | |
| GATTACCTTGAAAAGCCTCT+AGG | + | 51863:10500-10519 | MS.gene23249:intergenic | 40.0% | |
| GCTCAAAATCATGCATGAAC+TGG | + | 51863:10222-10241 | MS.gene23249:intergenic | 40.0% | |
| GGCTAGGTTATACTTCTTCA+CGG | + | 51863:9127-9146 | MS.gene23249:intergenic | 40.0% | |
| GGTTGTTAAATGGGAGAGTT+TGG | - | 51863:9778-9797 | MS.gene23249:intron | 40.0% | |
| TCCAAAGAGTTGAAGCCAAA+AGG | - | 51863:8457-8476 | MS.gene23249:intron | 40.0% | |
| TCCAAATCTTCATCATTCGG+AGG | + | 51863:8507-8526 | MS.gene23249:intergenic | 40.0% | |
| TGCAAGGTGGAGATTAGATT+TGG | - | 51863:8275-8294 | MS.gene23249:intron | 40.0% | |
| TGTGATCAAAGCCTTCATCA+AGG | - | 51863:8036-8055 | MS.gene23249:CDS | 40.0% | |
| TTCAAGGTAATCTCGGATTG+TGG | - | 51863:10508-10527 | MS.gene23249:CDS | 40.0% | |
| ! | CATAGAGTTTGCTCTGTCAA+AGG | + | 51863:8915-8934 | MS.gene23249:intergenic | 40.0% |
| ! | CATTGATGCTGCTTGTAATC+TGG | - | 51863:8979-8998 | MS.gene23249:intron | 40.0% |
| ! | CTTTGGTTGTGATGGTGATT+TGG | + | 51863:10164-10183 | MS.gene23249:intergenic | 40.0% |
| ! | TAGATCGTTGGATACCCTTT+TGG | + | 51863:8475-8494 | MS.gene23249:intergenic | 40.0% |
| ! | TGGCTTCAACTCTTTGGAAA+GGG | + | 51863:8455-8474 | MS.gene23249:intergenic | 40.0% |
| ! | TTGGCTTCAACTCTTTGGAA+AGG | + | 51863:8456-8475 | MS.gene23249:intergenic | 40.0% |
| !! | AAAAGGGTATCCAACGATCT+AGG | - | 51863:8474-8493 | MS.gene23249:intron | 40.0% |
| !! | GAGGCTTTTCAAGGTAATCT+CGG | - | 51863:10501-10520 | MS.gene23249:CDS | 40.0% |
| CATTCCATCAAGTGAAGCTC+AGG | + | 51863:10329-10348 | MS.gene23249:intergenic | 45.0% | |
| CGCATGACAGCAATAAAGGA+TGG | + | 51863:8950-8969 | MS.gene23249:intergenic | 45.0% | |
| CGGCTGAACTTCAGATTATC+AGG | + | 51863:9107-9126 | MS.gene23249:intergenic | 45.0% | |
| GTTCCACCCAAAATCGAACT+CGG | - | 51863:9154-9173 | MS.gene23249:intron | 45.0% | |
| TAAAGACTCCAAGTGGTGCA+AGG | - | 51863:8259-8278 | MS.gene23249:intron | 45.0% | |
| TACCTTGAAAAGCCTCTAGG+AGG | + | 51863:10497-10516 | MS.gene23249:intergenic | 45.0% | |
| TGGACGCATGACAGCAATAA+AGG | + | 51863:8954-8973 | MS.gene23249:intergenic | 45.0% | |
| TTCCACCCAAAATCGAACTC+GGG | - | 51863:9155-9174 | MS.gene23249:intron | 45.0% | |
| TTCCATCAAGTGAAGCTCAG+GGG | + | 51863:10327-10346 | MS.gene23249:intergenic | 45.0% | |
| ! | AACCTCCTAGAGGCTTTTCA+AGG | - | 51863:10492-10511 | MS.gene23249:CDS | 45.0% |
| ! | AGGGTGTGCTTGAATTTTGC+AGG | - | 51863:8857-8876 | MS.gene23249:intron | 45.0% |
| ! | GAGAACCCGAGTTCGATTTT+GGG | + | 51863:9163-9182 | MS.gene23249:intergenic | 45.0% |
| ! | GGCCTGCAAGGTATCTAATT+AGG | - | 51863:9799-9818 | MS.gene23249:intron | 45.0% |
| !!! | CCCTTTTGGCTTCAACTCTT+TGG | + | 51863:8461-8480 | MS.gene23249:intergenic | 45.0% |
| !!! | GGGTGGAACAATTTTTGGCT+AGG | + | 51863:9143-9162 | MS.gene23249:intergenic | 45.0% |
| AATCTCCACCTTGCACCACT+TGG | + | 51863:8270-8289 | MS.gene23249:intergenic | 50.0% | |
| ACCAACACAGAGACGGTTGA+AGG | - | 51863:10435-10454 | MS.gene23249:intron | 50.0% | |
| GGGTTAATCCTCCGGTTCTT+GGG | - | 51863:9071-9090 | MS.gene23249:intron | 50.0% | |
| TCCTTCAACCGTCTCTGTGT+TGG | + | 51863:10439-10458 | MS.gene23249:intergenic | 50.0% | |
| TGGGTTAATCCTCCGGTTCT+TGG | - | 51863:9070-9089 | MS.gene23249:intron | 50.0% | |
| ! | AACCCGAGTTCGATTTTGGG+TGG | + | 51863:9160-9179 | MS.gene23249:intergenic | 50.0% |
| ! | GGAGAACCCGAGTTCGATTT+TGG | + | 51863:9164-9183 | MS.gene23249:intergenic | 50.0% |
| !! | ATGCTTCCCCTGGGTTTTGA+GGG | - | 51863:10458-10477 | MS.gene23249:intron | 50.0% |
| AGACTCCAAGTGGTGCAAGG+TGG | - | 51863:8262-8281 | MS.gene23249:intron | 55.0% | |
| ATCCTCCGGTTCTTGGGAGA+AGG | - | 51863:9077-9096 | MS.gene23249:intron | 55.0% | |
| ATGGGAGAGTTTGGCCTGCA+AGG | - | 51863:9787-9806 | MS.gene23249:intron | 55.0% | |
| CTAGCCTCCCTCAAAACCCA+GGG | + | 51863:10468-10487 | MS.gene23249:intergenic | 55.0% | |
| GGCTAGCACTAACCTCCTAG+AGG | - | 51863:10482-10501 | MS.gene23249:CDS | 55.0% | |
| GGTTGAAGGATGCTTCCCCT+GGG | - | 51863:10449-10468 | MS.gene23249:intron | 55.0% | |
| TAGCCTCCCTCAAAACCCAG+GGG | + | 51863:10467-10486 | MS.gene23249:intergenic | 55.0% | |
| TCCTCCGGTTCTTGGGAGAA+GGG | - | 51863:9078-9097 | MS.gene23249:intron | 55.0% | |
| TGCCCCTGAGCTTCACTTGA+TGG | - | 51863:10322-10341 | MS.gene23249:intron | 55.0% | |
| ! | GATGCTTCCCCTGGGTTTTG+AGG | - | 51863:10457-10476 | MS.gene23249:intron | 55.0% |
| CCTCCGGTTCTTGGGAGAAG+GGG | - | 51863:9079-9098 | MS.gene23249:intron | 60.0% | |
| CGGTTGAAGGATGCTTCCCC+TGG | - | 51863:10448-10467 | MS.gene23249:intron | 60.0% | |
| CTCCGGTTCTTGGGAGAAGG+GGG | - | 51863:9080-9099 | MS.gene23249:intron | 60.0% | |
| GACCCCCTTCTCCCAAGAAC+CGG | + | 51863:9085-9104 | MS.gene23249:intergenic | 60.0% | |
| ! | GCTAGCCTCCCTCAAAACCC+AGG | + | 51863:10469-10488 | MS.gene23249:intergenic | 60.0% |
| !!! | CTTCCCCTGGGTTTTGAGGG+AGG | - | 51863:10461-10480 | MS.gene23249:intron | 60.0% |
| CCCCTTCTCCCAAGAACCGG+AGG | + | 51863:9082-9101 | MS.gene23249:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51863 | gene | 7994 | 10533 | 7994 | ID=MS.gene23249 |
| 51863 | mRNA | 7994 | 10533 | 7994 | ID=MS.gene23249.t1;Parent=MS.gene23249 |
| 51863 | exon | 10462 | 10533 | 10462 | ID=MS.gene23249.t1.exon1;Parent=MS.gene23249.t1 |
| 51863 | CDS | 10462 | 10533 | 10462 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| 51863 | exon | 9987 | 10326 | 9987 | ID=MS.gene23249.t1.exon2;Parent=MS.gene23249.t1 |
| 51863 | CDS | 9987 | 10326 | 9987 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| 51863 | exon | 9527 | 9648 | 9527 | ID=MS.gene23249.t1.exon3;Parent=MS.gene23249.t1 |
| 51863 | CDS | 9527 | 9648 | 9527 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| 51863 | exon | 8624 | 8819 | 8624 | ID=MS.gene23249.t1.exon4;Parent=MS.gene23249.t1 |
| 51863 | CDS | 8624 | 8819 | 8624 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| 51863 | exon | 8511 | 8556 | 8511 | ID=MS.gene23249.t1.exon5;Parent=MS.gene23249.t1 |
| 51863 | CDS | 8511 | 8556 | 8511 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| 51863 | exon | 7994 | 8102 | 7994 | ID=MS.gene23249.t1.exon6;Parent=MS.gene23249.t1 |
| 51863 | CDS | 7994 | 8102 | 7994 | ID=cds.MS.gene23249.t1;Parent=MS.gene23249.t1 |
| Gene Sequence |
| Protein sequence |
