AlfalfaGEDB | MS.gene23316

M. sativa cultivar XinJiangDaYe / MS.gene23316

KEGG: K00924
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF07714.20 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23316.t1	XP_003606988.2	63.4	377	2	1	564	804	598	974	1.00E-112	417.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23316.t1	Q9SYQ8	42.1	382	75	5	564	802	600	978	1.8e-65	252.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23316.t1	Q8GSS7	56.9	378	26	2	564	804	599	976	2.1e-99	373.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23316.t1	MTR_4g070970	94.556	698	35	1	1	695	1	698	0.0	1337
MS.gene23316.t1	MTR_4g070970	100.000	118	0	0	687	804	823	940	1.04e-70	251
MS.gene23316.t1	MTR_4g070950	90.738	637	59	0	1	637	35	671	0.0	1147
MS.gene23316.t1	MTR_5g014700	43.305	702	382	6	6	695	41	738	0.0	574
MS.gene23316.t1	MTR_5g014700	61.739	115	39	1	687	801	865	974	1.24e-34	142
MS.gene23316.t1	MTR_4g097880	44.253	696	371	7	11	695	46	735	0.0	572
MS.gene23316.t1	MTR_4g097880	56.489	131	48	2	672	798	843	968	4.21e-34	141
MS.gene23316.t1	MTR_3g449390	40.629	699	394	7	4	683	42	738	0.0	555
MS.gene23316.t1	MTR_3g449390	48.800	125	54	3	672	791	863	982	4.79e-25	112
MS.gene23316.t1	MTR_5g090100	41.317	714	379	8	1	698	41	730	4.30e-173	524

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23316.t1	AT1G75820	54.507	710	310	5	10	708	45	752	0.0	762
MS.gene23316.t1	AT1G75820	77.586	116	25	1	687	802	864	978	2.65e-49	188
MS.gene23316.t1	AT3G49670	43.678	696	375	6	11	695	47	736	0.0	589
MS.gene23316.t1	AT3G49670	60.185	108	38	1	687	794	863	965	1.86e-31	132
MS.gene23316.t1	AT5G65700	43.954	703	367	7	11	695	47	740	0.0	585
MS.gene23316.t1	AT5G65700	62.963	108	35	1	687	794	867	969	2.36e-33	139
MS.gene23316.t1	AT5G65700	43.954	703	367	7	11	695	47	740	0.0	585
MS.gene23316.t1	AT5G65700	62.963	108	35	1	687	794	867	969	2.36e-33	139
MS.gene23316.t1	AT4G20270	42.194	711	389	7	6	695	47	756	0.0	553
MS.gene23316.t1	AT4G20270	47.200	125	56	3	672	791	865	984	3.59e-26	115

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Find 205 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATAGCTT+TGG	0.454874	4.4:-37574980	MS.gene23316:CDS
AAAGGGTATCCATTGAGTCG+TGG	0.600137	4.4:+37574815	None:intergenic
AACATCAGTTCCGTTTGCCA+TGG	0.575095	4.4:+37576086	None:intergenic
AACCGTCATTGGAATTCCAC+CGG	0.576377	4.4:+37576650	None:intergenic
AAGAACATGTTGTTTGGTGT+GGG	0.556702	4.4:+37576358	None:intergenic
AAGACTCGGTGGAATTTCTC+CGG	0.511048	4.4:+37577439	None:intergenic
AAGCATTATCGTAACCTAAA+CGG	0.480895	4.4:+37577537	None:intergenic
AAGGGTATCCATTGAGTCGT+GGG	0.569049	4.4:+37574816	None:intergenic
AAGTTGTGACTTGTAGAGTG+AGG	0.701061	4.4:+37574689	None:intergenic
AATGCGAAGTCTCATGTCGT+TGG	0.558249	4.4:-37577339	MS.gene23316:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGATGTGTATAGCTT+TGG	-	chr4.4:37577787-37577806	MS.gene23316:CDS	30.0%
AAAGCTGAGATAGAAACATT+GGG	-	chr4.4:37576755-37576774	MS.gene23316:CDS	30.0%
AAGCATTATCGTAACCTAAA+CGG	+	chr4.4:37575233-37575252	None:intergenic	30.0%
AATTGGGTTATAATCTTGTG+TGG	+	chr4.4:37577343-37577362	None:intergenic	30.0%
ACGAAATTTACACACACTAA+CGG	-	chr4.4:37577181-37577200	MS.gene23316:CDS	30.0%
ATGTAGATAACACTAGTCAA+AGG	+	chr4.4:37577973-37577992	None:intergenic	30.0%
CTGAAAGAAGAGAACATAAT+AGG	-	chr4.4:37576626-37576645	MS.gene23316:CDS	30.0%
GAAGAGAACATAATAGGAAA+AGG	-	chr4.4:37576632-37576651	MS.gene23316:CDS	30.0%
GCACAATAGCAAAAATGATT+TGG	+	chr4.4:37577542-37577561	None:intergenic	30.0%
GCTTATGACAATAATTTCGA+AGG	-	chr4.4:37575018-37575037	MS.gene23316:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	37574676	37578113	37574676	ID=MS.gene23316
chr4.4	mRNA	37574676	37578113	37574676	ID=MS.gene23316.t1;Parent=MS.gene23316
chr4.4	exon	37576055	37578113	37576055	ID=MS.gene23316.t1.exon1;Parent=MS.gene23316.t1
chr4.4	CDS	37576055	37578113	37576055	ID=cds.MS.gene23316.t1;Parent=MS.gene23316.t1
chr4.4	exon	37574676	37575031	37574676	ID=MS.gene23316.t1.exon2;Parent=MS.gene23316.t1
chr4.4	CDS	37574676	37575031	37574676	ID=cds.MS.gene23316.t1;Parent=MS.gene23316.t1

Gene Sequence

>MS.gene23316

ATGAAAGGAGAGAAATCCACAGATGATGCACTCAAAGACTGGAAATTTTCAACTTCTGCTTCAGCTCACTGTTCATTTTCCGGTGTAAAATGCGACGAAGATCAACGAGTGATTGCTTTGAACGTGACGCAAGTTCCACTCTTCGGACAACTTTCCAAGGAGATCGGAGAGTTGAACATGCTCGAGAGCCTTACCATCACTATGGACAATCTCACCGGCGAGCTTCCAACTGAGTTATCCAAACTTACTTCTCTTAGAATCCTCAACATCTCTCACAACCTCTTCTCCGGTAACTTCCCCGGTAACATCACTTTCGAAATGAAGAAACTTGAGGCTCTAGATGCTTATGACAATAATTTCGAAGGTCCTCTTCCAGAGGAAATCGTTAGCCTGATGGAACTCAAGCACTTAAATCTTGCTGGAAATTTTTTCTCCGGTACAATACCGGAGAGCTACTCGGAGTTTCAGAAGTTGGAGATTTTAAGGCTGAATTATAACAGTTTAACGGGGAAGATTCCTAAGAGTTTGTCGAAGTTAAAGACGCTGAAGGAACTCCGTTTAGGTTACGATAATGCTTACTCCGGTGGAATTCCACCGGAGTTAGGTTTAATAAAATCTCTCCAATATCTTGAAATTTCTAATGCTAACCTGACCGGAGAAATTCCACCGAGTCTTGGAAATTTAGAAAACCTCGACTCCTTGTTTTTGCAAATGAACAACCTCACCGGAACAATTCCACCCGAACTCTCTTCAATGCGAAGTCTCATGTCGTTGGATCTCTCCATCAACGGACTCTCAGGGGAGATTCCAGAAACCTTCTCAAAGCTGAAAAATCTCACTCTCATCAATTTCTTCCAGAACAAGCTTCGCGGTTCAATTCCAGCGTTCATCGGCGATCTTCCTAACCTCGAAACACTTCAGGTTTGGGAAAACAATTTCTCTTTTATATTGCCTCAGAATCTCGGTTCAAATGGAAAGTTCATATACTTTGACGTTACGAAGAATCACCTCACCGGATTGATCCCAACAGAGTTATGCAAATCGAAGAAGTTGAAAACGTTTCTCGTTACTGACAACTTCTTCCGCGGTCCAATACCTAACGGAATCGGCGCGTGTAAGTCACTTGAAAAAATCAGAGTCGCTAATAACTACTTGGACGGTCCGGTCCCACCAGGGATTTTTCAGTTGCCTTCTGTACAGATAATGGAGCTTGGAAATAACCGTTTTAACGGGCAACTACCAACGGAGATTTCTGGCAATTCTCTCGGGACTCTCGCTCTTTCTAACAATTTATTTACCGGGAGGATTCCGGCGTCCATGAAGAATCTCCGATCATTGCAGACGCTGTTACTCGACGCCAATCAGTTTGTCGGAGAAATTCCGGCAGAGATCTTTGCTTTACCGGTGTTGACAAGAATCAACATAAGTGGCAACAATCTCACCGGTGGAATTCCAATGACGGTTACTCAATGTAGTTCACTGACCGCAGTTGACTTCAGCCGAAACATGCTTACTGGTGAGGTTCCCAAAGGGATGAAGAATCTGAAGGTGCTAAGCATTTTGAATGTTTCGCATAATAGCATATCGGGGCAAATCCCCGATGAGATTAGATTCATGACGAGTCTAACGACGCTGGATTTATCTTACAACAATTTCATTGGAATTGTCCCCACTGGTGGTCAGTTTTTGGTCTTCAACGACCGGTCATTTGCCGGAAACCCTAGCCTATGTTTCCCACACCAAACAACATGTTCTTCATTGCTCTATCCTTCGAGAAAAAGCCATGCAAAGGAGAAAGCCATCGTCATAGCAATCGTCTTCGCCACAGCGGTTTTAATGGTAATTGTAACATTGCACATGATGAGGAAGAGGAAGCGTCACATGGCAAAAGCATGGAAGCTAACAGCGTTTCAGAAGTTGGAATTCAGAGCGGAGGAAGTAGTGGAGTGTCTGAAAGAAGAGAACATAATAGGAAAAGGAGGAGCTGGGATTGTCTACAGAGGGTCCATGGCAAACGGAACTGATGTTGCGATAAAGCGTTTAGTTGGACAAGGAAGTGGTAGAAACGATTATGGATTCAAAGCTGAGATAGAAACATTGGGAAGGATTAGACACAGAAACATAATGAGGCTTTTGGGATATGTTTCAAATAAGGATACAAATTTGTTGCTGTATGAGTACATGCCTAATGGTAGTTTAGGTGAGTGGCTTCATGGTGCAAAAGGTTGTCATTTGAGTTGGGAAATGAGGTACAAAATTGCTGTGGAAGCTGCCAAGGGACTTTGCTATTTGCACCATGATTGTTCACCTCTTATCATTCATAGGGATGTTAAGTCTAATAATATCTTGCTTGATGCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTATGATCCAGGTGCTTCTCAATCCATGTCCTCTATTGCTGGCTCCTACGGCTACATTGCTCCAGGTTAGTTCCTTCCCTTCTTTATTTTTACAAGTCTAGCAACGAAATTTACACACACTAACGGCTTATTGAGTAGTGGAAAATTACGAGTTTGAATATGCACTCAAACATATAAAATGATTATTCAGTTTTTTACCATCTAAGTTGTATTTACAATTACGAGCAGGGGCATATCCACCATAAGCATAATGTGGCTGTAGCCACACAAGATTATAACCCAATTTTTTTTCTTCATAGACTAGACTTAAATAATGCATTATATACAATTTATGTTGTATTTTGTTTCATGTATTCTTACTTGGCTTAGCGGTAGAAAACTCTTTTACGATCACCGCGTCCTGGGTTCAACACTCCGTGTTCCAATTAGGGAATCGAACTTGTGTGGTAAAAATGACATATCCAAATCATTTTTGCTATTGTGCTTCATGTGTAACTAATTCGCTTTGTTAATATATATAGTTTCTTTGATATTTTAGCCACACCAATATCGAAAGTCTAGGTCCACCCTGATTACGAGACTTACTAACATTCTATTATGATCCAACAATATTATTTATTTTATTAGTGTCATGAGATTAAGTTTGTTTCTAATAATGGAAATGTTGAATGGTTGAGCAGAATATGCATACACTCTCAAAGTGGATGAGAAAAGTGATGTGTATAGCTTTGGAGTGGTGTTATTGGAGCTGATTATAGGAAGGAAGCCAGTTGGTGAATTTGGAGATGGAGTAGACATCGTTGGATGGATCAATAAAACTGAATTAGAACTTTATCAGCCGTCGGATAAAGCATTAGTGTCAGCAGTGGTGGACCCACGACTCAATGGATACCCTTTGACTAGTGTTATCTACATGTTCAACATAGCTATGATGTGTGTTAAAGAAATGGGACCAGCAAGACCTACCATGAGGGAAGTTGTTCATATGCTCACTAATCCACCTCACTCTACAAGTCACAACTTAATTAATCTCTAG

Protein sequence

>MS.gene23316.t1

MKGEKSTDDALKDWKFSTSASAHCSFSGVKCDEDQRVIALNVTQVPLFGQLSKEIGELNMLESLTITMDNLTGELPTELSKLTSLRILNISHNLFSGNFPGNITFEMKKLEALDAYDNNFEGPLPEEIVSLMELKHLNLAGNFFSGTIPESYSEFQKLEILRLNYNSLTGKIPKSLSKLKTLKELRLGYDNAYSGGIPPELGLIKSLQYLEISNANLTGEIPPSLGNLENLDSLFLQMNNLTGTIPPELSSMRSLMSLDLSINGLSGEIPETFSKLKNLTLINFFQNKLRGSIPAFIGDLPNLETLQVWENNFSFILPQNLGSNGKFIYFDVTKNHLTGLIPTELCKSKKLKTFLVTDNFFRGPIPNGIGACKSLEKIRVANNYLDGPVPPGIFQLPSVQIMELGNNRFNGQLPTEISGNSLGTLALSNNLFTGRIPASMKNLRSLQTLLLDANQFVGEIPAEIFALPVLTRINISGNNLTGGIPMTVTQCSSLTAVDFSRNMLTGEVPKGMKNLKVLSILNVSHNSISGQIPDEIRFMTSLTTLDLSYNNFIGIVPTGGQFLVFNDRSFAGNPSLCFPHQTTCSSLLYPSRKSHAKEKAIVIAIVFATAVLMVIVTLHMMRKRKRHMAKAWKLTAFQKLEFRAEEVVECLKEENIIGKGGAGIVYRGSMANGTDVAIKRLVGQGSEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWINKTELELYQPSDKALVSAVVDPRLNGYPLTSVIYMFNIAMMCVKEMGPARPTMREVVHMLTNPPHSTSHNLINL