Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23329.t1 | XP_003607012.1 | 96.4 | 224 | 7 | 1 | 1 | 223 | 1 | 224 | 4.90E-120 | 440.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23329.t1 | Q0IGM7 | 54.0 | 200 | 68 | 5 | 1 | 176 | 1 | 200 | 8.8e-46 | 185.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23329.t1 | G7JIM6 | 96.4 | 224 | 7 | 1 | 1 | 223 | 1 | 224 | 3.5e-120 | 440.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene23329.t1 | TF | DBB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23329.t1 | MTR_4g071200 | 96.429 | 224 | 7 | 1 | 1 | 223 | 1 | 224 | 3.99e-161 | 446 |
MS.gene23329.t1 | MTR_3g117320 | 59.624 | 213 | 69 | 6 | 1 | 198 | 1 | 211 | 8.97e-77 | 232 |
MS.gene23329.t1 | MTR_1g023260 | 47.926 | 217 | 99 | 4 | 1 | 208 | 1 | 212 | 4.36e-57 | 184 |
MS.gene23329.t1 | MTR_1g023260 | 51.913 | 183 | 81 | 2 | 1 | 181 | 1 | 178 | 3.44e-56 | 179 |
MS.gene23329.t1 | MTR_3g113070 | 47.191 | 178 | 58 | 3 | 1 | 177 | 1 | 143 | 4.73e-51 | 166 |
MS.gene23329.t1 | MTR_2g073370 | 50.794 | 126 | 58 | 3 | 1 | 126 | 1 | 122 | 6.66e-36 | 129 |
MS.gene23329.t1 | MTR_4g067320 | 50.000 | 110 | 54 | 1 | 1 | 110 | 1 | 109 | 2.21e-34 | 124 |
MS.gene23329.t1 | MTR_4g067320 | 50.000 | 110 | 54 | 1 | 1 | 110 | 1 | 109 | 2.24e-34 | 124 |
MS.gene23329.t1 | MTR_2g099010 | 48.182 | 110 | 56 | 1 | 1 | 110 | 1 | 109 | 9.92e-32 | 117 |
MS.gene23329.t1 | MTR_2g099010 | 48.182 | 110 | 56 | 1 | 1 | 110 | 1 | 109 | 1.01e-31 | 117 |
MS.gene23329.t1 | MTR_5g021580 | 37.324 | 142 | 78 | 4 | 1 | 135 | 1 | 138 | 6.78e-23 | 92.8 |
MS.gene23329.t1 | MTR_5g021580 | 37.324 | 142 | 78 | 4 | 1 | 135 | 1 | 138 | 7.63e-23 | 92.8 |
MS.gene23329.t1 | MTR_1g023260 | 39.869 | 153 | 78 | 4 | 65 | 208 | 57 | 204 | 3.93e-21 | 89.7 |
MS.gene23329.t1 | MTR_1g013450 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 1.13e-19 | 86.7 |
MS.gene23329.t1 | MTR_3g105710 | 39.175 | 97 | 49 | 1 | 5 | 101 | 6 | 92 | 1.19e-16 | 78.2 |
MS.gene23329.t1 | MTR_4g128930 | 40.860 | 93 | 45 | 1 | 5 | 97 | 22 | 104 | 2.41e-16 | 78.2 |
MS.gene23329.t1 | MTR_7g018170 | 35.043 | 117 | 63 | 2 | 5 | 121 | 26 | 129 | 2.80e-15 | 75.1 |
MS.gene23329.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 6.57e-14 | 70.5 |
MS.gene23329.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 8.00e-14 | 70.9 |
MS.gene23329.t1 | MTR_3g082630 | 35.052 | 97 | 52 | 2 | 1 | 97 | 1 | 86 | 2.87e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23329.t1 | AT4G39070 | 53.000 | 200 | 70 | 4 | 1 | 176 | 1 | 200 | 6.58e-59 | 187 |
MS.gene23329.t1 | AT1G75540 | 36.562 | 320 | 132 | 10 | 1 | 250 | 1 | 319 | 1.63e-54 | 179 |
MS.gene23329.t1 | AT1G06040 | 46.715 | 137 | 66 | 2 | 1 | 137 | 1 | 130 | 1.01e-36 | 128 |
MS.gene23329.t1 | AT1G78600 | 51.724 | 116 | 55 | 1 | 1 | 116 | 1 | 115 | 2.36e-36 | 131 |
MS.gene23329.t1 | AT1G78600 | 42.529 | 174 | 91 | 3 | 1 | 173 | 1 | 166 | 3.43e-36 | 131 |
MS.gene23329.t1 | AT1G06040 | 46.715 | 137 | 66 | 2 | 1 | 137 | 1 | 130 | 9.52e-36 | 128 |
MS.gene23329.t1 | AT2G31380 | 51.327 | 113 | 54 | 1 | 1 | 113 | 1 | 112 | 1.67e-33 | 122 |
MS.gene23329.t1 | AT4G10240 | 44.138 | 145 | 67 | 4 | 1 | 135 | 1 | 141 | 1.85e-30 | 112 |
MS.gene23329.t1 | AT4G38960 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 2.09e-23 | 94.0 |
MS.gene23329.t1 | AT4G38960 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 2.09e-23 | 94.0 |
MS.gene23329.t1 | AT2G21320 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 4.23e-22 | 90.5 |
MS.gene23329.t1 | AT2G24790 | 41.237 | 97 | 47 | 1 | 5 | 101 | 8 | 94 | 5.08e-19 | 83.2 |
MS.gene23329.t1 | AT2G24790 | 41.237 | 97 | 47 | 1 | 5 | 101 | 8 | 94 | 1.27e-18 | 83.6 |
MS.gene23329.t1 | AT5G24930 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 2.67e-16 | 77.8 |
MS.gene23329.t1 | AT5G15850 | 32.520 | 123 | 70 | 2 | 5 | 127 | 12 | 121 | 1.00e-15 | 76.3 |
MS.gene23329.t1 | AT4G38960 | 31.081 | 148 | 55 | 3 | 1 | 105 | 1 | 144 | 1.96e-15 | 73.6 |
MS.gene23329.t1 | AT5G15840 | 33.333 | 123 | 70 | 2 | 5 | 127 | 20 | 130 | 6.32e-15 | 73.2 |
MS.gene23329.t1 | AT5G15840 | 33.333 | 123 | 70 | 2 | 5 | 127 | 20 | 130 | 1.05e-14 | 73.2 |
MS.gene23329.t1 | AT3G02380 | 36.559 | 93 | 49 | 1 | 5 | 97 | 16 | 98 | 1.08e-14 | 73.2 |
MS.gene23329.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 2.52e-12 | 65.1 |
MS.gene23329.t1 | AT1G28050 | 35.644 | 101 | 55 | 1 | 2 | 102 | 6 | 96 | 2.60e-12 | 66.6 |
MS.gene23329.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 3.59e-12 | 65.5 |
MS.gene23329.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 5.17e-12 | 65.1 |
MS.gene23329.t1 | AT5G48250 | 34.694 | 98 | 53 | 2 | 1 | 97 | 1 | 88 | 5.78e-12 | 65.5 |
MS.gene23329.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 1.03e-11 | 64.7 |
MS.gene23329.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 1.08e-11 | 64.7 |
MS.gene23329.t1 | AT5G57660 | 34.646 | 127 | 60 | 4 | 5 | 122 | 22 | 134 | 1.12e-11 | 64.3 |
MS.gene23329.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.98e-11 | 62.4 |
MS.gene23329.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.98e-11 | 62.4 |
MS.gene23329.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.98e-11 | 62.4 |
MS.gene23329.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.98e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTGTTTCAATCAAGTATT+CGG | 0.289976 | 4.4:+37401242 | None:intergenic |
ACCTTACAGAAAACGTTATT+AGG | 0.333966 | 4.4:+37401177 | None:intergenic |
ATCACAGAGAGGGGTGTCTT+TGG | 0.337373 | 4.4:+37401864 | None:intergenic |
CTTGAAAATGAACTTGGTCT+TGG | 0.353565 | 4.4:+37401339 | None:intergenic |
AAGGTCTTCCATGCAGTAAC+CGG | 0.360314 | 4.4:+37401218 | None:intergenic |
TGTTTATAACTTGAAGATCT+TGG | 0.361700 | 4.4:+37401008 | None:intergenic |
CTGAGCCATTGGAAGTTGTT+GGG | 0.365142 | 4.4:+37401379 | None:intergenic |
TGGTAAGTTTGTTGACTTCA+TGG | 0.370579 | 4.4:+37401463 | None:intergenic |
AAGATAGAGCAATACTTTGC+AGG | 0.379068 | 4.4:-37401503 | MS.gene23329:CDS |
TACTTGATTGAAACAATTCC+CGG | 0.387327 | 4.4:-37401237 | MS.gene23329:CDS |
TCTGAGCCATTGGAAGTTGT+TGG | 0.394596 | 4.4:+37401378 | None:intergenic |
CAGAGAGCTGCTTCATCTGC+AGG | 0.413650 | 4.4:+37401967 | None:intergenic |
CCCCACATTGATTCTTTAGA+CGG | 0.435559 | 4.4:-37400923 | MS.gene23329:CDS |
CCTCTACATTGTTTGAAGAA+TGG | 0.436801 | 4.4:+37400839 | None:intergenic |
GTGTAAAAGAAGCATCAAAA+AGG | 0.446259 | 4.4:+37401199 | None:intergenic |
AAGTTATAAACATGTCTGAC+TGG | 0.451524 | 4.4:-37400997 | MS.gene23329:CDS |
AACTTACCAAGCAACACAAC+AGG | 0.456566 | 4.4:-37401449 | MS.gene23329:CDS |
CAACATACTAAAGTTGTTGA+AGG | 0.460895 | 4.4:-37400887 | MS.gene23329:CDS |
TGAACTTGGTCTTGGACTTG+AGG | 0.462812 | 4.4:+37401347 | None:intergenic |
GTGTTTAGCAGAGACCTTGT+TGG | 0.467471 | 4.4:+37401915 | None:intergenic |
CTTCTCACCGGCGTAAAGAT+CGG | 0.467524 | 4.4:-37401423 | MS.gene23329:CDS |
CAGAGACCTTGTTGGCATAG+TGG | 0.468511 | 4.4:+37401923 | None:intergenic |
CCCACATTGATTCTTTAGAC+GGG | 0.468902 | 4.4:-37400922 | MS.gene23329:CDS |
CAAGTATTCGGAAATGCTAC+TGG | 0.481122 | 4.4:+37401254 | None:intergenic |
GGTTCTTAGTTCTGAGCCAT+TGG | 0.490954 | 4.4:+37401368 | None:intergenic |
AAGAATGGAGGACTAATTGA+AGG | 0.493324 | 4.4:+37400854 | None:intergenic |
AGAGGGGTGTCTTTGGAAGT+GGG | 0.493908 | 4.4:+37401871 | None:intergenic |
GAGAGGGGTGTCTTTGGAAG+TGG | 0.504462 | 4.4:+37401870 | None:intergenic |
AAGAAACCTGTTGTGTTGCT+TGG | 0.533532 | 4.4:+37401443 | None:intergenic |
AGATAGAGCAATACTTTGCA+GGG | 0.534009 | 4.4:-37401502 | MS.gene23329:CDS |
AACAATTCCCGGTTACTGCA+TGG | 0.543090 | 4.4:-37401226 | MS.gene23329:CDS |
TTCATCTGCAGGGCAGAACA+AGG | 0.547884 | 4.4:+37401978 | None:intergenic |
CACAACAGGTTTCTTCTCAC+CGG | 0.551440 | 4.4:-37401435 | MS.gene23329:CDS |
TCGAATTAGCGCTAAGCTGA+GGG | 0.554345 | 4.4:+37400951 | None:intergenic |
AAGTTCTTTCAAAGAAAACA+TGG | 0.562402 | 4.4:-37401295 | MS.gene23329:CDS |
TCAAACCCAACAACTTCCAA+TGG | 0.565279 | 4.4:-37401384 | MS.gene23329:CDS |
AGTTTGTTGACTTCATGGAT+AGG | 0.572223 | 4.4:+37401468 | None:intergenic |
AGGTCTTCCATGCAGTAACC+GGG | 0.572681 | 4.4:+37401219 | None:intergenic |
GAGGGGTGTCTTTGGAAGTG+GGG | 0.580604 | 4.4:+37401872 | None:intergenic |
GGGTGTCTTTGGAAGTGGGG+TGG | 0.581849 | 4.4:+37401875 | None:intergenic |
CTACATTGTTTGAAGAATGG+AGG | 0.582130 | 4.4:+37400842 | None:intergenic |
TTCGAATTAGCGCTAAGCTG+AGG | 0.584714 | 4.4:+37400950 | None:intergenic |
AGAGAGCTGCTTCATCTGCA+GGG | 0.589609 | 4.4:+37401968 | None:intergenic |
GGGAATCTAACTTGAGATTG+TGG | 0.592001 | 4.4:+37400971 | None:intergenic |
CCCGTCTAAAGAATCAATGT+GGG | 0.595981 | 4.4:+37400922 | None:intergenic |
CAATATCCACTATGCCAACA+AGG | 0.603596 | 4.4:-37401929 | MS.gene23329:CDS |
CCACATTGATTCTTTAGACG+GGG | 0.606501 | 4.4:-37400921 | MS.gene23329:CDS |
CCTTGCAGATATCACAGAGA+GGG | 0.606602 | 4.4:+37401854 | None:intergenic |
CCCTCTCTGTGATATCTGCA+AGG | 0.608181 | 4.4:-37401854 | MS.gene23329:intron |
CCCCGTCTAAAGAATCAATG+TGG | 0.617525 | 4.4:+37400921 | None:intergenic |
GTTTGTGACATGCATCACAC+TGG | 0.618408 | 4.4:+37402010 | None:intergenic |
TGATGCATGTCACAAACAAG+AGG | 0.622158 | 4.4:-37402004 | MS.gene23329:CDS |
AGTTATAAACATGTCTGACT+GGG | 0.637692 | 4.4:-37400996 | MS.gene23329:CDS |
CCATTCTTCAAACAATGTAG+AGG | 0.655261 | 4.4:-37400839 | MS.gene23329:CDS |
ATCTGCAGGGCAGAACAAGG+AGG | 0.684576 | 4.4:+37401981 | None:intergenic |
CTTGCAGATATCACAGAGAG+GGG | 0.687405 | 4.4:+37401855 | None:intergenic |
AGAAGCACCGATCTTTACGC+CGG | 0.690841 | 4.4:+37401416 | None:intergenic |
CCGTCTAAAGAATCAATGTG+GGG | 0.706719 | 4.4:+37400923 | None:intergenic |
ACCTTGCAGATATCACAGAG+AGG | 0.718667 | 4.4:+37401853 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTTGTTTATCAAAAAAAT+AGG | - | chr4.4:37401188-37401207 | MS.gene23329:CDS | 15.0% |
!! | CTACTCAATTAATTAAAATA+AGG | - | chr4.4:37401772-37401791 | MS.gene23329:intron | 15.0% |
!!! | ATAACATTTTTATATATTGC+AGG | - | chr4.4:37401294-37401313 | MS.gene23329:CDS | 15.0% |
!! | AATTGTTTCAATCAAGTATT+CGG | + | chr4.4:37401608-37401627 | None:intergenic | 20.0% |
!!! | AACTAATATGACCATATTTT+TGG | + | chr4.4:37401239-37401258 | None:intergenic | 20.0% |
!!! | AATAAGGTGTATATGTTTTT+TGG | - | chr4.4:37401788-37401807 | MS.gene23329:intron | 20.0% |
! | AAGTTCTTTCAAAGAAAACA+TGG | - | chr4.4:37401552-37401571 | MS.gene23329:intron | 25.0% |
! | AATAAAAGACTGAGTGATAT+AGG | - | chr4.4:37401269-37401288 | MS.gene23329:CDS | 25.0% |
! | TGTTTATAACTTGAAGATCT+TGG | + | chr4.4:37401842-37401861 | None:intergenic | 25.0% |
!! | ATTTTTATATATTGCAGGAG+AGG | - | chr4.4:37401299-37401318 | MS.gene23329:CDS | 25.0% |
!! | TTTTCACTTGAAAATGAACT+TGG | + | chr4.4:37401517-37401536 | None:intergenic | 25.0% |
!!! | ATGTTTTTTGGTATTGTTTC+AGG | - | chr4.4:37401800-37401819 | MS.gene23329:intron | 25.0% |
AAGTACGTAAGAAATAGAGA+AGG | + | chr4.4:37401025-37401044 | None:intergenic | 30.0% | |
AAGTTATAAACATGTCTGAC+TGG | - | chr4.4:37401850-37401869 | MS.gene23329:intron | 30.0% | |
ACCTTACAGAAAACGTTATT+AGG | + | chr4.4:37401673-37401692 | None:intergenic | 30.0% | |
AGTTATAAACATGTCTGACT+GGG | - | chr4.4:37401851-37401870 | MS.gene23329:intron | 30.0% | |
CAACATACTAAAGTTGTTGA+AGG | - | chr4.4:37401960-37401979 | MS.gene23329:CDS | 30.0% | |
CGCTGAAAATCAGTTAAATA+AGG | + | chr4.4:37401140-37401159 | None:intergenic | 30.0% | |
TACTTGATTGAAACAATTCC+CGG | - | chr4.4:37401610-37401629 | MS.gene23329:intron | 30.0% | |
TAGATGAAAAATAGCTAGCT+AGG | + | chr4.4:37401755-37401774 | None:intergenic | 30.0% | |
! | AAAAGAAAAAAGTGCACTGT+TGG | + | chr4.4:37401705-37401724 | None:intergenic | 30.0% |
! | ACCTAATAACGTTTTCTGTA+AGG | - | chr4.4:37401669-37401688 | MS.gene23329:intron | 30.0% |
! | TTCTTACGTACTTTTCAACA+GGG | - | chr4.4:37401032-37401051 | MS.gene23329:intron | 30.0% |
! | TTTCTTACGTACTTTTCAAC+AGG | - | chr4.4:37401031-37401050 | MS.gene23329:intron | 30.0% |
!! | AACGTTTTCTGTAAGGTATT+TGG | - | chr4.4:37401676-37401695 | MS.gene23329:intron | 30.0% |
!! | GTGTAAAAGAAGCATCAAAA+AGG | + | chr4.4:37401651-37401670 | None:intergenic | 30.0% |
!!! | ACCATATTTTTGGATCGTAT+AGG | + | chr4.4:37401229-37401248 | None:intergenic | 30.0% |
AAGAATGGAGGACTAATTGA+AGG | + | chr4.4:37401996-37402015 | None:intergenic | 35.0% | |
AAGATAGAGCAATACTTTGC+AGG | - | chr4.4:37401344-37401363 | MS.gene23329:CDS | 35.0% | |
AGATAGAGCAATACTTTGCA+GGG | - | chr4.4:37401345-37401364 | MS.gene23329:CDS | 35.0% | |
CCATTCTTCAAACAATGTAG+AGG | - | chr4.4:37402008-37402027 | MS.gene23329:CDS | 35.0% | |
CCTCTACATTGTTTGAAGAA+TGG | + | chr4.4:37402011-37402030 | None:intergenic | 35.0% | |
CTACATTGTTTGAAGAATGG+AGG | + | chr4.4:37402008-37402027 | None:intergenic | 35.0% | |
CTTGAAAATGAACTTGGTCT+TGG | + | chr4.4:37401511-37401530 | None:intergenic | 35.0% | |
GCCTATACGATCCAAAAATA+TGG | - | chr4.4:37401225-37401244 | MS.gene23329:CDS | 35.0% | |
!! | AGTTTGTTGACTTCATGGAT+AGG | + | chr4.4:37401382-37401401 | None:intergenic | 35.0% |
!! | TGGTAAGTTTGTTGACTTCA+TGG | + | chr4.4:37401387-37401406 | None:intergenic | 35.0% |
AACTTACCAAGCAACACAAC+AGG | - | chr4.4:37401398-37401417 | MS.gene23329:CDS | 40.0% | |
CAAGTATTCGGAAATGCTAC+TGG | + | chr4.4:37401596-37401615 | None:intergenic | 40.0% | |
CAATATCCACTATGCCAACA+AGG | - | chr4.4:37400918-37400937 | MS.gene23329:CDS | 40.0% | |
CCCGTCTAAAGAATCAATGT+GGG | + | chr4.4:37401928-37401947 | None:intergenic | 40.0% | |
CCGTCTAAAGAATCAATGTG+GGG | + | chr4.4:37401927-37401946 | None:intergenic | 40.0% | |
GGGAATCTAACTTGAGATTG+TGG | + | chr4.4:37401879-37401898 | None:intergenic | 40.0% | |
TCAAACCCAACAACTTCCAA+TGG | - | chr4.4:37401463-37401482 | MS.gene23329:CDS | 40.0% | |
TGATGCATGTCACAAACAAG+AGG | - | chr4.4:37400843-37400862 | MS.gene23329:CDS | 40.0% | |
! | AAGAAACCTGTTGTGTTGCT+TGG | + | chr4.4:37401407-37401426 | None:intergenic | 40.0% |
!! | CCACATTGATTCTTTAGACG+GGG | - | chr4.4:37401926-37401945 | MS.gene23329:CDS | 40.0% |
!! | CCCACATTGATTCTTTAGAC+GGG | - | chr4.4:37401925-37401944 | MS.gene23329:CDS | 40.0% |
!! | CCCCACATTGATTCTTTAGA+CGG | - | chr4.4:37401924-37401943 | MS.gene23329:CDS | 40.0% |
AACAATTCCCGGTTACTGCA+TGG | - | chr4.4:37401621-37401640 | MS.gene23329:intron | 45.0% | |
AAGGTCTTCCATGCAGTAAC+CGG | + | chr4.4:37401632-37401651 | None:intergenic | 45.0% | |
ACCTTGCAGATATCACAGAG+AGG | + | chr4.4:37400997-37401016 | None:intergenic | 45.0% | |
CACAACAGGTTTCTTCTCAC+CGG | - | chr4.4:37401412-37401431 | MS.gene23329:CDS | 45.0% | |
CCCCGTCTAAAGAATCAATG+TGG | + | chr4.4:37401929-37401948 | None:intergenic | 45.0% | |
CCTTGCAGATATCACAGAGA+GGG | + | chr4.4:37400996-37401015 | None:intergenic | 45.0% | |
CTGAGCCATTGGAAGTTGTT+GGG | + | chr4.4:37401471-37401490 | None:intergenic | 45.0% | |
CTTGCAGATATCACAGAGAG+GGG | + | chr4.4:37400995-37401014 | None:intergenic | 45.0% | |
GTGTTTAGCAGAGACCTTGT+TGG | + | chr4.4:37400935-37400954 | None:intergenic | 45.0% | |
GTTTGTGACATGCATCACAC+TGG | + | chr4.4:37400840-37400859 | None:intergenic | 45.0% | |
TCGAATTAGCGCTAAGCTGA+GGG | + | chr4.4:37401899-37401918 | None:intergenic | 45.0% | |
TCTGAGCCATTGGAAGTTGT+TGG | + | chr4.4:37401472-37401491 | None:intergenic | 45.0% | |
TTCGAATTAGCGCTAAGCTG+AGG | + | chr4.4:37401900-37401919 | None:intergenic | 45.0% | |
!! | GGTTCTTAGTTCTGAGCCAT+TGG | + | chr4.4:37401482-37401501 | None:intergenic | 45.0% |
!! | TGAACTTGGTCTTGGACTTG+AGG | + | chr4.4:37401503-37401522 | None:intergenic | 45.0% |
AGAGAGCTGCTTCATCTGCA+GGG | + | chr4.4:37400882-37400901 | None:intergenic | 50.0% | |
AGGTCTTCCATGCAGTAACC+GGG | + | chr4.4:37401631-37401650 | None:intergenic | 50.0% | |
CAGAGACCTTGTTGGCATAG+TGG | + | chr4.4:37400927-37400946 | None:intergenic | 50.0% | |
CCCTCTCTGTGATATCTGCA+AGG | - | chr4.4:37400993-37401012 | MS.gene23329:CDS | 50.0% | |
CTTCTCACCGGCGTAAAGAT+CGG | - | chr4.4:37401424-37401443 | MS.gene23329:CDS | 50.0% | |
TTCATCTGCAGGGCAGAACA+AGG | + | chr4.4:37400872-37400891 | None:intergenic | 50.0% | |
!! | AGAAGCACCGATCTTTACGC+CGG | + | chr4.4:37401434-37401453 | None:intergenic | 50.0% |
!! | AGAGGGGTGTCTTTGGAAGT+GGG | + | chr4.4:37400979-37400998 | None:intergenic | 50.0% |
!! | ATCACAGAGAGGGGTGTCTT+TGG | + | chr4.4:37400986-37401005 | None:intergenic | 50.0% |
ATCTGCAGGGCAGAACAAGG+AGG | + | chr4.4:37400869-37400888 | None:intergenic | 55.0% | |
CAGAGAGCTGCTTCATCTGC+AGG | + | chr4.4:37400883-37400902 | None:intergenic | 55.0% | |
CTGCAACACAACCGCAGTAG+AGG | - | chr4.4:37401105-37401124 | MS.gene23329:intron | 55.0% | |
GGCTGATACTGCCTCTACTG+CGG | + | chr4.4:37401119-37401138 | None:intergenic | 55.0% | |
!! | GAGAGGGGTGTCTTTGGAAG+TGG | + | chr4.4:37400980-37400999 | None:intergenic | 55.0% |
!! | GAGGGGTGTCTTTGGAAGTG+GGG | + | chr4.4:37400978-37400997 | None:intergenic | 55.0% |
! | GGGTGTCTTTGGAAGTGGGG+TGG | + | chr4.4:37400975-37400994 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 37400829 | 37402040 | 37400829 | ID=MS.gene23329 |
chr4.4 | mRNA | 37400829 | 37402040 | 37400829 | ID=MS.gene23329.t1;Parent=MS.gene23329 |
chr4.4 | exon | 37401855 | 37402040 | 37401855 | ID=MS.gene23329.t1.exon1;Parent=MS.gene23329.t1 |
chr4.4 | CDS | 37401855 | 37402040 | 37401855 | ID=cds.MS.gene23329.t1;Parent=MS.gene23329.t1 |
chr4.4 | exon | 37401179 | 37401553 | 37401179 | ID=MS.gene23329.t1.exon2;Parent=MS.gene23329.t1 |
chr4.4 | CDS | 37401179 | 37401553 | 37401179 | ID=cds.MS.gene23329.t1;Parent=MS.gene23329.t1 |
chr4.4 | exon | 37400829 | 37401047 | 37400829 | ID=MS.gene23329.t1.exon3;Parent=MS.gene23329.t1 |
chr4.4 | CDS | 37400829 | 37401047 | 37400829 | ID=cds.MS.gene23329.t1;Parent=MS.gene23329.t1 |
Gene Sequence |
Protein sequence |