AlfalfaGEDB | MS.gene23345

M. sativa cultivar XinJiangDaYe / MS.gene23345

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0045893 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23345.t1	XP_003607047.1	97	296	8	1	1	296	1	295	9.40E-136	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23345.t1	O65515	53.4	178	59	6	119	282	67	234	2.8e-40	167.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23345.t1	G7JJU1	97.0	296	8	1	1	296	1	295	6.8e-136	493.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23345.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23345.t1	MTR_4g071590	96.622	296	9	1	1	296	1	295	0.0	594
MS.gene23345.t1	MTR_4g471590	96.622	296	9	1	1	296	1	295	0.0	594
MS.gene23345.t1	MTR_3g117380	53.292	319	107	8	1	296	15	314	3.27e-97	289
MS.gene23345.t1	MTR_8g076340	39.159	309	138	10	1	281	1	287	1.23e-51	171
MS.gene23345.t1	MTR_5g021340	40.282	355	137	11	1	296	51	389	4.63e-50	170
MS.gene23345.t1	MTR_3g109760	38.406	276	120	9	36	281	21	276	4.96e-45	155
MS.gene23345.t1	MTR_8g013950	39.024	287	107	10	39	281	33	295	3.29e-43	151
MS.gene23345.t1	MTR_1g006650	34.921	315	141	12	15	281	5	303	2.23e-42	149
MS.gene23345.t1	MTR_1g094930	75.714	70	17	0	207	276	142	211	5.39e-35	127
MS.gene23345.t1	MTR_1g094930	75.714	70	17	0	207	276	237	306	1.67e-34	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23345.t1	AT4G36240	47.082	257	90	10	40	282	10	234	1.42e-56	182
MS.gene23345.t1	AT5G66320	35.838	346	139	10	8	291	5	329	2.87e-51	172
MS.gene23345.t1	AT5G66320	35.838	346	139	10	8	291	5	329	2.87e-51	172
MS.gene23345.t1	AT4G34680	41.034	290	114	11	6	283	7	251	1.97e-49	165
MS.gene23345.t1	AT4G34680	41.034	290	114	11	6	283	7	251	1.97e-49	165
MS.gene23345.t1	AT5G25830	38.047	297	108	12	40	281	13	288	1.36e-44	154
MS.gene23345.t1	AT3G60530	47.778	180	73	5	112	283	63	229	2.29e-43	149
MS.gene23345.t1	AT4G32890	36.331	278	115	11	39	281	16	266	4.14e-43	150
MS.gene23345.t1	AT2G45050	44.845	194	73	4	112	281	65	248	5.03e-43	148
MS.gene23345.t1	AT3G51080	69.231	91	22	2	212	296	221	311	2.37e-38	137

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Find 88 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTATGTAACGCTTG+TGG	0.656575	4.4:-37179120	MS.gene23345:CDS
AAAACGCCACAGTGGAGAGC+TGG	0.532352	4.4:-37179156	MS.gene23345:CDS
AAAAGAAATTGATGTTTACC+AGG	0.530934	4.4:-37179898	MS.gene23345:CDS
AAAATCCACACGTTACAGTT+GGG	0.498357	4.4:+37179279	None:intergenic
AAACATGGAAGTTGTTGTAG+CGG	0.614309	4.4:-37180081	None:intergenic
AAACTGAGCCCCACCCGTTT+GGG	0.350163	4.4:+37179209	None:intergenic
AACCGGTTTCCGGTCTGAAC+CGG	0.370991	4.4:-37178969	MS.gene23345:CDS
AACGCAAACAACGTTGTTGT+CGG	0.417578	4.4:-37179987	MS.gene23345:CDS
AACTCGTGACCATTTGAATC+CGG	0.481371	4.4:+37178950	None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG	0.557944	4.4:-37179219	MS.gene23345:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATTACCTTTGTAGCA+TGG	-	chr4.4:37179359-37179378	MS.gene23345:CDS	30.0%
TCTCTTCACAAATTGTTTGT+TGG	+	chr4.4:37179007-37179026	None:intergenic	30.0%
AAAAATCCACACGTTACAGT+TGG	+	chr4.4:37179750-37179769	None:intergenic	35.0%
AAAACACTATGTAACGCTTG+TGG	-	chr4.4:37179905-37179924	MS.gene23345:CDS	35.0%
AAAATCCACACGTTACAGTT+GGG	+	chr4.4:37179749-37179768	None:intergenic	35.0%
AGAAATTGATGTTTACCAGG+AGG	-	chr4.4:37179130-37179149	MS.gene23345:CDS	35.0%
TATCACTAGTATCATGTGTC+CGG	-	chr4.4:37179471-37179490	MS.gene23345:intron	35.0%
AACGCAAACAACGTTGTTGT+CGG	-	chr4.4:37179038-37179057	MS.gene23345:CDS	40.0%
AACTCGTGACCATTTGAATC+CGG	+	chr4.4:37180078-37180097	None:intergenic	40.0%
AATTGATGTTTACCAGGAGG+AGG	-	chr4.4:37179133-37179152	MS.gene23345:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	37178948	37180099	37178948	ID=MS.gene23345
chr4.4	mRNA	37178948	37180099	37178948	ID=MS.gene23345.t1;Parent=MS.gene23345
chr4.4	exon	37179743	37180099	37179743	ID=MS.gene23345.t1.exon1;Parent=MS.gene23345.t1
chr4.4	CDS	37179743	37180099	37179743	ID=cds.MS.gene23345.t1;Parent=MS.gene23345.t1
chr4.4	exon	37178948	37179481	37178948	ID=MS.gene23345.t1.exon2;Parent=MS.gene23345.t1
chr4.4	CDS	37178948	37179481	37178948	ID=cds.MS.gene23345.t1;Parent=MS.gene23345.t1

Gene Sequence

>MS.gene23345

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAGAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTACCGGGGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGTGAGTCTTTAACCATGCAATAAATTATTTTTGTTTTTTATTTAATAAAGAATGAATTCATTACCTTTGTAGCATGGACATTTCTGATAGAAGATGTGCTAGTATCCCACACATGTCACTAACACGACACATTTGATTACATTGAATTATGTTATTTTTTTTTTATTATCACTAGTATCATGTGTCCGGTCGGTGTTTGTGTCGTGTCTGTATGTGCTTCATATATAACTAATAACTCGTTTTGGTTTTCTTAATTCTCAGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCTGCATGCAGTCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA

Protein sequence

>MS.gene23345.t1

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGTGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS