AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23345

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23345.t1 MTR_4g071590 96.622 296 9 1 1 296 1 295 0.0 594
MS.gene23345.t1 MTR_4g471590 96.622 296 9 1 1 296 1 295 0.0 594
MS.gene23345.t1 MTR_3g117380 53.292 319 107 8 1 296 15 314 3.27e-97 289
MS.gene23345.t1 MTR_8g076340 39.159 309 138 10 1 281 1 287 1.23e-51 171
MS.gene23345.t1 MTR_5g021340 40.282 355 137 11 1 296 51 389 4.63e-50 170
MS.gene23345.t1 MTR_3g109760 38.406 276 120 9 36 281 21 276 4.96e-45 155
MS.gene23345.t1 MTR_8g013950 39.024 287 107 10 39 281 33 295 3.29e-43 151
MS.gene23345.t1 MTR_1g006650 34.921 315 141 12 15 281 5 303 2.23e-42 149
MS.gene23345.t1 MTR_1g094930 75.714 70 17 0 207 276 142 211 5.39e-35 127
MS.gene23345.t1 MTR_1g094930 75.714 70 17 0 207 276 237 306 1.67e-34 128
MS.gene23345.t1 MTR_6g032830 81.538 65 12 0 212 276 192 256 2.70e-34 125
MS.gene23345.t1 MTR_7g085410 80.000 65 13 0 212 276 188 252 2.91e-33 123
MS.gene23345.t1 MTR_1g116010 67.532 77 25 0 212 288 164 240 4.80e-33 122
MS.gene23345.t1 MTR_1g046680 76.471 68 16 0 212 279 172 239 1.17e-32 120
MS.gene23345.t1 MTR_2g094600 62.791 86 30 1 191 276 197 280 3.51e-32 121
MS.gene23345.t1 MTR_4g058910 73.134 67 18 0 212 278 314 380 1.59e-31 121
MS.gene23345.t1 MTR_5g007600 68.571 70 22 0 212 281 259 328 1.22e-29 115
MS.gene23345.t1 MTR_5g007600 59.036 83 28 1 199 275 138 220 2.74e-26 105
MS.gene23345.t1 MTR_7g446110 57.143 63 27 0 211 273 186 248 2.12e-20 88.6
MS.gene23345.t1 MTR_7g445950 30.128 156 105 1 118 273 30 181 2.55e-20 86.7
MS.gene23345.t1 MTR_7g445980 51.316 76 36 1 199 273 20 95 3.06e-19 81.3
MS.gene23345.t1 MTR_7g446070 31.868 182 107 5 105 273 16 193 7.10e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23345.t1 AT4G36240 47.082 257 90 10 40 282 10 234 1.42e-56 182
MS.gene23345.t1 AT5G66320 35.838 346 139 10 8 291 5 329 2.87e-51 172
MS.gene23345.t1 AT5G66320 35.838 346 139 10 8 291 5 329 2.87e-51 172
MS.gene23345.t1 AT4G34680 41.034 290 114 11 6 283 7 251 1.97e-49 165
MS.gene23345.t1 AT4G34680 41.034 290 114 11 6 283 7 251 1.97e-49 165
MS.gene23345.t1 AT5G25830 38.047 297 108 12 40 281 13 288 1.36e-44 154
MS.gene23345.t1 AT3G60530 47.778 180 73 5 112 283 63 229 2.29e-43 149
MS.gene23345.t1 AT4G32890 36.331 278 115 11 39 281 16 266 4.14e-43 150
MS.gene23345.t1 AT2G45050 44.845 194 73 4 112 281 65 248 5.03e-43 148
MS.gene23345.t1 AT3G51080 69.231 91 22 2 212 296 221 311 2.37e-38 137
MS.gene23345.t1 AT3G24050 64.706 85 29 1 197 280 178 262 9.79e-34 124
MS.gene23345.t1 AT3G54810 75.000 68 17 0 212 279 229 296 3.72e-33 124
MS.gene23345.t1 AT3G54810 75.000 68 17 0 212 279 229 296 3.72e-33 124
MS.gene23345.t1 AT1G08010 72.464 69 19 0 212 280 220 288 3.61e-32 121
MS.gene23345.t1 AT1G08010 72.464 69 19 0 212 280 220 288 3.61e-32 121
MS.gene23345.t1 AT1G08010 72.464 69 19 0 212 280 220 288 3.61e-32 121
MS.gene23345.t1 AT1G08000 71.014 69 20 0 212 280 218 286 2.82e-30 116
MS.gene23345.t1 AT1G08000 71.014 69 20 0 212 280 218 286 2.82e-30 116
MS.gene23345.t1 AT3G45170 60.274 73 29 0 214 286 117 189 9.59e-27 104
MS.gene23345.t1 AT2G28340 63.077 65 24 0 214 278 193 257 1.70e-24 100

Find 88 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGTCTTGGTTGTTCT+AGG 0.195513 4.4:+37179303 None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG 0.226880 4.4:+37179215 None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG 0.232140 4.4:+37179216 None:intergenic
GGCCGATGATGTTGCGGATT+TGG 0.241470 4.4:-37179460 MS.gene23345:CDS
GAACAGCCACCGTAAGGTTT+TGG 0.270098 4.4:-37179019 MS.gene23345:CDS
GAGGTGGATGAACCGGTTTC+CGG 0.310815 4.4:-37178979 MS.gene23345:CDS
GGTTCGGCCCGGGCCTGAAC+TGG 0.312951 4.4:+37179384 None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG 0.331211 4.4:-37179742 MS.gene23345:intron
GAAACTGAGCCCCACCCGTT+TGG 0.331959 4.4:+37179208 None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG 0.337151 4.4:+37179253 None:intergenic
TCTCTTCACAAATTGTTTGT+TGG 0.346081 4.4:+37180021 None:intergenic
AAACTGAGCCCCACCCGTTT+GGG 0.350163 4.4:+37179209 None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG 0.352825 4.4:+37179880 None:intergenic
CTCTCTATTGTATCCAGTTC+AGG 0.364580 4.4:-37179397 MS.gene23345:CDS
AACCGGTTTCCGGTCTGAAC+CGG 0.370991 4.4:-37178969 MS.gene23345:CDS
GCATTGGTTGGGCCCGGTCT+AGG 0.372639 4.4:+37179357 None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG 0.379924 4.4:+37179293 None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG 0.399228 4.4:+37179363 None:intergenic
AGTTCAGGCCCGGGCCGAAC+CGG 0.407384 4.4:-37179382 MS.gene23345:CDS
GTCTAGGTTCCGGTTCGGCC+CGG 0.414385 4.4:+37179373 None:intergenic
GGCCGAACCGGAACCTAGAC+CGG 0.414860 4.4:-37179370 MS.gene23345:CDS
TTCTTTGCTGAAAAGAGTAT+AGG 0.416988 4.4:+37179252 None:intergenic
AACGCAAACAACGTTGTTGT+CGG 0.417578 4.4:-37179987 MS.gene23345:CDS
TTTGGAAATGAGGCGGAGGA+AGG 0.432787 4.4:-37179001 MS.gene23345:CDS
TATGTAACGCTTGTGGTGTT+CGG 0.433641 4.4:-37179113 MS.gene23345:CDS
GAATTTCAACATGGTTCTGT+TGG 0.444517 4.4:-37179921 MS.gene23345:CDS
TATTGTATCCAGTTCAGGCC+CGG 0.446736 4.4:-37179392 MS.gene23345:CDS
GGAATGGGTGTCTCACTTTG+TGG 0.449579 4.4:-37179439 MS.gene23345:CDS
AATGAGGCGGAGGAAGGAGG+TGG 0.451531 4.4:-37178995 MS.gene23345:CDS
ATCCGGTTCAGACCGGAAAC+CGG 0.452815 4.4:+37178967 None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG 0.452883 4.4:-37178986 MS.gene23345:CDS
TCTAGGTTCCGGTTCGGCCC+GGG 0.468440 4.4:+37179374 None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG 0.468461 4.4:+37180047 None:intergenic
GCCTCATTTCCAAAACCTTA+CGG 0.469337 4.4:+37179010 None:intergenic
TTCTGCGGATTATAGAGAGC+TGG 0.472534 4.4:+37179328 None:intergenic
CGGTCTGAACCGGATTCAAA+TGG 0.475660 4.4:-37178959 MS.gene23345:CDS
ATGATGTTGCGGATTTGGAA+TGG 0.479723 4.4:-37179455 MS.gene23345:CDS
AACTCGTGACCATTTGAATC+CGG 0.481371 4.4:+37178950 None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG 0.483307 4.4:-37179147 MS.gene23345:CDS
TGTGGTGTTCGGTTTAAGTC+CGG 0.492368 4.4:-37179102 MS.gene23345:CDS
AGACTCGCCGTCCCCGGTAC+CGG 0.492865 4.4:+37179776 None:intergenic
GGATACAATAGAGAGAGTTC+TGG 0.493646 4.4:+37179405 None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG 0.493923 4.4:-37179217 MS.gene23345:CDS
AAAATCCACACGTTACAGTT+GGG 0.498357 4.4:+37179279 None:intergenic
TGATGTTGCGGATTTGGAAT+GGG 0.501793 4.4:-37179454 MS.gene23345:CDS
GGAAATGAGGCGGAGGAAGG+AGG 0.505698 4.4:-37178998 MS.gene23345:CDS
GCCCGGTCTAGGTTCCGGTT+CGG 0.510484 4.4:+37179368 None:intergenic
AGCTGGGAATAAGCATTGGT+TGG 0.510903 4.4:+37179345 None:intergenic
TTCTCAGGCCGATGATGTTG+CGG 0.519029 4.4:-37179466 MS.gene23345:intron
AAAAGAAATTGATGTTTACC+AGG 0.530934 4.4:-37179898 MS.gene23345:CDS
GCTGGGAATAAGCATTGGTT+GGG 0.531676 4.4:+37179346 None:intergenic
AAAACGCCACAGTGGAGAGC+TGG 0.532352 4.4:-37179156 MS.gene23345:CDS
AATTGATGTTTACCAGGAGG+AGG 0.533216 4.4:-37179892 MS.gene23345:CDS
TGCATGCAGGTCTATACTCC+GGG 0.538197 4.4:+37179070 None:intergenic
TTCCAAATCCGCAACATCAT+CGG 0.540001 4.4:+37179458 None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG 0.541657 4.4:-37179218 MS.gene23345:CDS
GAATAAGCATTGGTTGGGCC+CGG 0.542060 4.4:+37179351 None:intergenic
ATTGTATCCAGTTCAGGCCC+GGG 0.543140 4.4:-37179391 MS.gene23345:CDS
GGAGTCAGACTCGCCGTCCC+CGG 0.547526 4.4:+37179770 None:intergenic
AGAGAGCTGGGAATAAGCAT+TGG 0.549150 4.4:+37179341 None:intergenic
GCCGAACCGGAACCTAGACC+GGG 0.552879 4.4:-37179369 MS.gene23345:CDS
TCTGCGGATTATAGAGAGCT+GGG 0.553907 4.4:+37179329 None:intergenic
CATTTGAATCCGGTTCAGAC+CGG 0.555998 4.4:+37178960 None:intergenic
GCTGTTCGAATGAATTTCAC+CGG 0.556294 4.4:+37179035 None:intergenic
CCCGGTACCGGAAAATGTTG+TGG 0.557351 4.4:+37179788 None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG 0.557944 4.4:-37179219 MS.gene23345:CDS
TCATTCGAACAGCCACCGTA+AGG 0.576237 4.4:-37179025 MS.gene23345:CDS
CTGCATGCAGGTCTATACTC+CGG 0.578551 4.4:+37179069 None:intergenic
CTAGAACAACCAAGACAAGA+AGG 0.581886 4.4:-37179302 MS.gene23345:CDS
ACCATGTTGAAATTCACCGT+TGG 0.582797 4.4:+37179929 None:intergenic
CACCGGAACTGCTAAACCAC+CGG 0.593758 4.4:+37179740 None:intergenic
ATACTCCGGGAAAAGCCGAC+CGG 0.594686 4.4:+37179083 None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG 0.603627 4.4:+37179313 None:intergenic
GAAAACGTCGGACTGCATGC+AGG 0.603890 4.4:+37179057 None:intergenic
AAACATGGAAGTTGTTGTAG+CGG 0.614309 4.4:-37180081 None:intergenic
TCGTTCATGTTCAGAACCTG+AGG 0.628083 4.4:+37179836 None:intergenic
TTCATGTTCAGAACCTGAGG+TGG 0.629594 4.4:+37179839 None:intergenic
GTGTTCGGTTTAAGTCCGGT+CGG 0.631814 4.4:-37179098 MS.gene23345:CDS
TCCAACGGTGAATTTCAACA+TGG 0.652718 4.4:-37179930 MS.gene23345:CDS
GAAGGCCCAACTGTAACGTG+TGG 0.654146 4.4:-37179284 MS.gene23345:CDS
AAAACACTATGTAACGCTTG+TGG 0.656575 4.4:-37179120 MS.gene23345:CDS
TGAATTTCACCGGAAAACGT+CGG 0.667076 4.4:+37179045 None:intergenic
AGAAATTGATGTTTACCAGG+AGG 0.667546 4.4:-37179895 MS.gene23345:CDS
AAGCGTTGAAACCAAGCTTG+AGG 0.681951 4.4:-37180058 MS.gene23345:CDS
TCATTTCCAAAACCTTACGG+TGG 0.687073 4.4:+37179013 None:intergenic
AGCGGACCAGCTCTCCACTG+TGG 0.697012 4.4:+37179150 None:intergenic
ATGTTCAGAAAACGCCACAG+TGG 0.715931 4.4:-37179164 MS.gene23345:CDS
GTGGGGCTCAGTTTCAACGA+CGG 0.724625 4.4:-37179200 MS.gene23345:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATAATTTATTGCA+TGG + chr4.4:37179320-37179339 None:intergenic 15.0%
!!! ATATAACTAATAACTCGTTT+TGG - chr4.4:37179527-37179546 MS.gene23345:intron 20.0%
! AAAAGAAATTGATGTTTACC+AGG - chr4.4:37179127-37179146 MS.gene23345:CDS 25.0%
!!! TTTTGGTTTTCTTAATTCTC+AGG - chr4.4:37179544-37179563 MS.gene23345:intron 25.0%
AATTCATTACCTTTGTAGCA+TGG - chr4.4:37179359-37179378 MS.gene23345:CDS 30.0%
TCTCTTCACAAATTGTTTGT+TGG + chr4.4:37179007-37179026 None:intergenic 30.0%
! TCAAATTCCACAACATTTTC+CGG - chr4.4:37179230-37179249 MS.gene23345:CDS 30.0%
! TCTTTGCTGAAAAGAGTATA+GGG + chr4.4:37179775-37179794 None:intergenic 30.0%
! TTCTTTGCTGAAAAGAGTAT+AGG + chr4.4:37179776-37179795 None:intergenic 30.0%
AAAAATCCACACGTTACAGT+TGG + chr4.4:37179750-37179769 None:intergenic 35.0%
AAAACACTATGTAACGCTTG+TGG - chr4.4:37179905-37179924 MS.gene23345:CDS 35.0%
AAAATCCACACGTTACAGTT+GGG + chr4.4:37179749-37179768 None:intergenic 35.0%
AGAAATTGATGTTTACCAGG+AGG - chr4.4:37179130-37179149 MS.gene23345:CDS 35.0%
TATCACTAGTATCATGTGTC+CGG - chr4.4:37179471-37179490 MS.gene23345:intron 35.0%
! CAAGCGTTACATAGTGTTTT+CGG + chr4.4:37179905-37179924 None:intergenic 35.0%
! GAATTTCAACATGGTTCTGT+TGG - chr4.4:37179104-37179123 MS.gene23345:CDS 35.0%
!! GACTTGCTTGATTTTTCCAA+CGG - chr4.4:37179080-37179099 MS.gene23345:CDS 35.0%
AACGCAAACAACGTTGTTGT+CGG - chr4.4:37179038-37179057 MS.gene23345:CDS 40.0%
AACTCGTGACCATTTGAATC+CGG + chr4.4:37180078-37180097 None:intergenic 40.0%
AATTGATGTTTACCAGGAGG+AGG - chr4.4:37179133-37179152 MS.gene23345:CDS 40.0%
ACCATGTTGAAATTCACCGT+TGG + chr4.4:37179099-37179118 None:intergenic 40.0%
ATAGATTCTGTCCTCAAGCT+TGG + chr4.4:37178981-37179000 None:intergenic 40.0%
ATGATGTTGCGGATTTGGAA+TGG - chr4.4:37179570-37179589 MS.gene23345:intron 40.0%
CAGAAATGTCCATGCTACAA+AGG + chr4.4:37179371-37179390 None:intergenic 40.0%
CTAGAACAACCAAGACAAGA+AGG - chr4.4:37179723-37179742 MS.gene23345:intron 40.0%
CTCTCTATTGTATCCAGTTC+AGG - chr4.4:37179628-37179647 MS.gene23345:intron 40.0%
CTTCTTGTCTTGGTTGTTCT+AGG + chr4.4:37179725-37179744 None:intergenic 40.0%
GCCTCATTTCCAAAACCTTA+CGG + chr4.4:37180018-37180037 None:intergenic 40.0%
GCTGTTCGAATGAATTTCAC+CGG + chr4.4:37179993-37180012 None:intergenic 40.0%
GGATACAATAGAGAGAGTTC+TGG + chr4.4:37179623-37179642 None:intergenic 40.0%
TATGTAACGCTTGTGGTGTT+CGG - chr4.4:37179912-37179931 MS.gene23345:CDS 40.0%
TCATTTCCAAAACCTTACGG+TGG + chr4.4:37180015-37180034 None:intergenic 40.0%
TCCAACGGTGAATTTCAACA+TGG - chr4.4:37179095-37179114 MS.gene23345:CDS 40.0%
TGAATTTCACCGGAAAACGT+CGG + chr4.4:37179983-37180002 None:intergenic 40.0%
TTCCAAATCCGCAACATCAT+CGG + chr4.4:37179570-37179589 None:intergenic 40.0%
TTGCATGGTTAAAGACTCAC+CGG + chr4.4:37179305-37179324 None:intergenic 40.0%
! TCTTTTCAGCAAAGAAGCAG+AGG - chr4.4:37179780-37179799 MS.gene23345:CDS 40.0%
! TGATGTTGCGGATTTGGAAT+GGG - chr4.4:37179571-37179590 MS.gene23345:intron 40.0%
!!! ACCGTAAGGTTTTGGAAATG+AGG - chr4.4:37180014-37180033 MS.gene23345:CDS 40.0%
!!! GTAAGGTTTTGGAAATGAGG+CGG - chr4.4:37180017-37180036 MS.gene23345:CDS 40.0%
ACTAGTATCATGTGTCCGGT+CGG - chr4.4:37179475-37179494 MS.gene23345:intron 45.0%
AGAGAGCTGGGAATAAGCAT+TGG + chr4.4:37179687-37179706 None:intergenic 45.0%
ATGTTCAGAAAACGCCACAG+TGG - chr4.4:37179861-37179880 MS.gene23345:CDS 45.0%
CATTTGAATCCGGTTCAGAC+CGG + chr4.4:37180068-37180087 None:intergenic 45.0%
GTCGTGTTAGTGACATGTGT+GGG + chr4.4:37179413-37179432 None:intergenic 45.0%
TATTGTATCCAGTTCAGGCC+CGG - chr4.4:37179633-37179652 MS.gene23345:intron 45.0%
TCGTTCATGTTCAGAACCTG+AGG + chr4.4:37179192-37179211 None:intergenic 45.0%
TGCTAAACCACCGGCAAAAA+TGG + chr4.4:37179279-37179298 None:intergenic 45.0%
TGTCGTGTTAGTGACATGTG+TGG + chr4.4:37179414-37179433 None:intergenic 45.0%
TGTGGTGTTCGGTTTAAGTC+CGG - chr4.4:37179923-37179942 MS.gene23345:CDS 45.0%
TTCATGTTCAGAACCTGAGG+TGG + chr4.4:37179189-37179208 None:intergenic 45.0%
! ACTGTGGCGTTTTCTGAACA+TGG + chr4.4:37179862-37179881 None:intergenic 45.0%
! CATAGTGTTTTCGGTCCAAG+CGG + chr4.4:37179896-37179915 None:intergenic 45.0%
! TCCACAACATTTTCCGGTAC+CGG - chr4.4:37179236-37179255 MS.gene23345:CDS 45.0%
! TCTGCGGATTATAGAGAGCT+GGG + chr4.4:37179699-37179718 None:intergenic 45.0%
! TGGTTGTTCTAGGCTTTCTG+CGG + chr4.4:37179715-37179734 None:intergenic 45.0%
! TTCTGCGGATTATAGAGAGC+TGG + chr4.4:37179700-37179719 None:intergenic 45.0%
!! AAGCGTTGAAACCAAGCTTG+AGG - chr4.4:37178967-37178986 MS.gene23345:CDS 45.0%
!! AGCTGGGAATAAGCATTGGT+TGG + chr4.4:37179683-37179702 None:intergenic 45.0%
!! GAGTCTGACTCCATTTTTGC+CGG - chr4.4:37179266-37179285 MS.gene23345:CDS 45.0%
!! GCTGGGAATAAGCATTGGTT+GGG + chr4.4:37179682-37179701 None:intergenic 45.0%
AAAAAGCCCGAAGCCCAAAC+GGG - chr4.4:37179803-37179822 MS.gene23345:CDS 50.0%
ACAGTTGGGCCTTCTTGTCT+TGG + chr4.4:37179735-37179754 None:intergenic 50.0%
ATTGTATCCAGTTCAGGCCC+GGG - chr4.4:37179634-37179653 MS.gene23345:intron 50.0%
CGGTCTGAACCGGATTCAAA+TGG - chr4.4:37180066-37180085 MS.gene23345:CDS 50.0%
CTGCATGCAGGTCTATACTC+CGG + chr4.4:37179959-37179978 None:intergenic 50.0%
CTTCTTCTTCTTCCTCCTCC+TGG + chr4.4:37179148-37179167 None:intergenic 50.0%
GAAAAAGCCCGAAGCCCAAA+CGG - chr4.4:37179802-37179821 MS.gene23345:CDS 50.0%
GAGAAAAACAGCACCACCTC+AGG - chr4.4:37179173-37179192 MS.gene23345:CDS 50.0%
GGAATGGGTGTCTCACTTTG+TGG - chr4.4:37179586-37179605 MS.gene23345:intron 50.0%
GTGTTCGGTTTAAGTCCGGT+CGG - chr4.4:37179927-37179946 MS.gene23345:CDS 50.0%
TCATTCGAACAGCCACCGTA+AGG - chr4.4:37180000-37180019 MS.gene23345:CDS 50.0%
TGCATGCAGGTCTATACTCC+GGG + chr4.4:37179958-37179977 None:intergenic 50.0%
TTCTCAGGCCGATGATGTTG+CGG - chr4.4:37179559-37179578 MS.gene23345:intron 50.0%
TTTGGAAATGAGGCGGAGGA+AGG - chr4.4:37180024-37180043 MS.gene23345:CDS 50.0%
! CACAACATTTTCCGGTACCG+GGG - chr4.4:37179238-37179257 MS.gene23345:CDS 50.0%
! CCACAACATTTTCCGGTACC+GGG - chr4.4:37179237-37179256 MS.gene23345:CDS 50.0%
! GAACAGCCACCGTAAGGTTT+TGG - chr4.4:37180006-37180025 MS.gene23345:CDS 50.0%
! GCGTTTTCTGAACATGGCAG+TGG + chr4.4:37179856-37179875 None:intergenic 50.0%
!! GAATAAGCATTGGTTGGGCC+CGG + chr4.4:37179677-37179696 None:intergenic 50.0%
!! TCTGACTCCATTTTTGCCGG+TGG - chr4.4:37179269-37179288 MS.gene23345:CDS 50.0%
!!! AGGTTTTGGAAATGAGGCGG+AGG - chr4.4:37180020-37180039 MS.gene23345:CDS 50.0%
AAAACGCCACAGTGGAGAGC+TGG - chr4.4:37179869-37179888 MS.gene23345:CDS 55.0%
AAACTGAGCCCCACCCGTTT+GGG + chr4.4:37179819-37179838 None:intergenic 55.0%
ATACTCCGGGAAAAGCCGAC+CGG + chr4.4:37179945-37179964 None:intergenic 55.0%
ATCCGGTTCAGACCGGAAAC+CGG + chr4.4:37180061-37180080 None:intergenic 55.0%
CACCGGAACTGCTAAACCAC+CGG + chr4.4:37179288-37179307 None:intergenic 55.0%
GAAAACGTCGGACTGCATGC+AGG + chr4.4:37179971-37179990 None:intergenic 55.0%
GAAGGCCCAACTGTAACGTG+TGG - chr4.4:37179741-37179760 MS.gene23345:intron 55.0%
GACACGACACAAACACCGAC+CGG + chr4.4:37179493-37179512 None:intergenic 55.0%
GAGGAAGGAGGTGGATGAAC+CGG - chr4.4:37180039-37180058 MS.gene23345:CDS 55.0%
GGCCGATGATGTTGCGGATT+TGG - chr4.4:37179565-37179584 MS.gene23345:intron 55.0%
GTGGGGCTCAGTTTCAACGA+CGG - chr4.4:37179825-37179844 MS.gene23345:CDS 55.0%
TGCCGGTGGTTTAGCAGTTC+CGG - chr4.4:37179283-37179302 MS.gene23345:CDS 55.0%
! AACCGGTTTCCGGTCTGAAC+CGG - chr4.4:37180056-37180075 MS.gene23345:CDS 55.0%
! CCCGGTACCGGAAAATGTTG+TGG + chr4.4:37179240-37179259 None:intergenic 55.0%
! GAGGTGGATGAACCGGTTTC+CGG - chr4.4:37180046-37180065 MS.gene23345:CDS 55.0%
! GCATGCAGTCCGACGTTTTC+CGG - chr4.4:37179971-37179990 MS.gene23345:CDS 55.0%
!! ACATTTTCCGGTACCGGGGA+CGG - chr4.4:37179242-37179261 MS.gene23345:CDS 55.0%
!! TAAGTCCGGTCGGCTTTTCC+CGG - chr4.4:37179937-37179956 MS.gene23345:CDS 55.0%
AATGAGGCGGAGGAAGGAGG+TGG - chr4.4:37180030-37180049 MS.gene23345:CDS 60.0%
GAAACTGAGCCCCACCCGTT+TGG + chr4.4:37179820-37179839 None:intergenic 60.0%
GGAAATGAGGCGGAGGAAGG+AGG - chr4.4:37180027-37180046 MS.gene23345:CDS 60.0%
AAGCCCGAAGCCCAAACGGG+TGG - chr4.4:37179806-37179825 MS.gene23345:CDS 65.0%
AGCCCCACCCGTTTGGGCTT+CGG + chr4.4:37179813-37179832 None:intergenic 65.0%
AGCCCGAAGCCCAAACGGGT+GGG - chr4.4:37179807-37179826 MS.gene23345:CDS 65.0%
AGCGGACCAGCTCTCCACTG+TGG + chr4.4:37179878-37179897 None:intergenic 65.0%
CAGTGGAGAGCTGGTCCGCT+TGG - chr4.4:37179878-37179897 MS.gene23345:CDS 65.0%
GCCCGGTCTAGGTTCCGGTT+CGG + chr4.4:37179660-37179679 None:intergenic 65.0%
GCCGAACCGGAACCTAGACC+GGG - chr4.4:37179656-37179675 MS.gene23345:intron 65.0%
GGCCGAACCGGAACCTAGAC+CGG - chr4.4:37179655-37179674 MS.gene23345:intron 65.0%
GTTGGGCCCGGTCTAGGTTC+CGG + chr4.4:37179665-37179684 None:intergenic 65.0%
!! GCATTGGTTGGGCCCGGTCT+AGG + chr4.4:37179671-37179690 None:intergenic 65.0%
!! GTCTAGGTTCCGGTTCGGCC+CGG + chr4.4:37179655-37179674 None:intergenic 65.0%
!! TCTAGGTTCCGGTTCGGCCC+GGG + chr4.4:37179654-37179673 None:intergenic 65.0%
AGACTCGCCGTCCCCGGTAC+CGG + chr4.4:37179252-37179271 None:intergenic 70.0%
AGTTCAGGCCCGGGCCGAAC+CGG - chr4.4:37179643-37179662 MS.gene23345:intron 70.0%
GCCCCACCCGTTTGGGCTTC+GGG + chr4.4:37179812-37179831 None:intergenic 70.0%
GCCCGAAGCCCAAACGGGTG+GGG - chr4.4:37179808-37179827 MS.gene23345:CDS 70.0%
GGAGTCAGACTCGCCGTCCC+CGG + chr4.4:37179258-37179277 None:intergenic 70.0%
GGTTCGGCCCGGGCCTGAAC+TGG + chr4.4:37179644-37179663 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 37178948 37180099 37178948 ID=MS.gene23345
chr4.4 mRNA 37178948 37180099 37178948 ID=MS.gene23345.t1;Parent=MS.gene23345
chr4.4 exon 37179743 37180099 37179743 ID=MS.gene23345.t1.exon1;Parent=MS.gene23345.t1
chr4.4 CDS 37179743 37180099 37179743 ID=cds.MS.gene23345.t1;Parent=MS.gene23345.t1
chr4.4 exon 37178948 37179481 37178948 ID=MS.gene23345.t1.exon2;Parent=MS.gene23345.t1
chr4.4 CDS 37178948 37179481 37178948 ID=cds.MS.gene23345.t1;Parent=MS.gene23345.t1
Gene Sequence

>MS.gene23345

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAGAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTACCGGGGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGTGAGTCTTTAACCATGCAATAAATTATTTTTGTTTTTTATTTAATAAAGAATGAATTCATTACCTTTGTAGCATGGACATTTCTGATAGAAGATGTGCTAGTATCCCACACATGTCACTAACACGACACATTTGATTACATTGAATTATGTTATTTTTTTTTTATTATCACTAGTATCATGTGTCCGGTCGGTGTTTGTGTCGTGTCTGTATGTGCTTCATATATAACTAATAACTCGTTTTGGTTTTCTTAATTCTCAGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCTGCATGCAGTCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA
Protein sequence

>MS.gene23345.t1

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGTGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS