Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23361.t1 | XP_003607083.1 | 89.4 | 490 | 39 | 3 | 1 | 487 | 1 | 480 | 1.20E-215 | 759.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23361.t1 | Q6S4P4 | 61.4 | 153 | 59 | 0 | 317 | 469 | 82 | 234 | 2.0e-36 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23361.t1 | G7JJX7 | 89.4 | 490 | 39 | 3 | 1 | 487 | 1 | 480 | 8.9e-216 | 759.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23361.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23361.t1 | MTR_4g072090 | 92.912 | 522 | 18 | 4 | 1 | 519 | 1 | 506 | 0.0 | 969 |
| MS.gene23361.t1 | MTR_4g072090 | 93.111 | 450 | 18 | 3 | 1 | 447 | 1 | 440 | 0.0 | 841 |
| MS.gene23361.t1 | MTR_1g023690 | 46.843 | 491 | 173 | 18 | 46 | 482 | 46 | 502 | 5.54e-91 | 289 |
| MS.gene23361.t1 | MTR_6g034945 | 52.535 | 217 | 91 | 6 | 286 | 499 | 76 | 283 | 5.58e-50 | 174 |
| MS.gene23361.t1 | MTR_3g467120 | 68.841 | 138 | 34 | 1 | 352 | 489 | 162 | 290 | 6.31e-49 | 173 |
| MS.gene23361.t1 | MTR_5g075390 | 65.942 | 138 | 38 | 1 | 328 | 465 | 129 | 257 | 2.52e-48 | 171 |
| MS.gene23361.t1 | MTR_2g099050 | 43.609 | 266 | 93 | 7 | 214 | 473 | 109 | 323 | 2.52e-48 | 173 |
| MS.gene23361.t1 | MTR_3g094020 | 63.768 | 138 | 42 | 1 | 328 | 465 | 77 | 206 | 6.43e-47 | 166 |
| MS.gene23361.t1 | MTR_2g090900 | 49.474 | 95 | 48 | 0 | 365 | 459 | 189 | 283 | 4.97e-20 | 91.7 |
| MS.gene23361.t1 | MTR_2g090900 | 49.474 | 95 | 48 | 0 | 365 | 459 | 189 | 283 | 7.38e-20 | 91.3 |
| MS.gene23361.t1 | MTR_4g079500 | 37.410 | 139 | 64 | 2 | 321 | 459 | 171 | 286 | 1.26e-19 | 90.5 |
| MS.gene23361.t1 | MTR_0405s0060 | 77.193 | 57 | 13 | 0 | 342 | 398 | 99 | 155 | 2.04e-19 | 87.8 |
| MS.gene23361.t1 | MTR_1g099030 | 35.870 | 184 | 100 | 6 | 321 | 498 | 76 | 247 | 5.62e-15 | 75.9 |
| MS.gene23361.t1 | MTR_8g088650 | 37.705 | 122 | 70 | 2 | 338 | 459 | 206 | 321 | 8.51e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23361.t1 | AT4G38900 | 58.140 | 516 | 139 | 24 | 18 | 488 | 29 | 512 | 1.52e-160 | 468 |
| MS.gene23361.t1 | AT4G38900 | 58.140 | 516 | 139 | 24 | 18 | 488 | 29 | 512 | 1.52e-160 | 468 |
| MS.gene23361.t1 | AT4G38900 | 57.471 | 522 | 139 | 25 | 18 | 488 | 29 | 518 | 1.04e-157 | 460 |
| MS.gene23361.t1 | AT2G21230 | 54.945 | 455 | 144 | 18 | 86 | 498 | 72 | 507 | 2.02e-124 | 374 |
| MS.gene23361.t1 | AT2G21230 | 54.945 | 455 | 144 | 18 | 86 | 498 | 72 | 507 | 2.02e-124 | 374 |
| MS.gene23361.t1 | AT2G21230 | 54.013 | 461 | 145 | 19 | 86 | 498 | 72 | 513 | 2.58e-121 | 366 |
| MS.gene23361.t1 | AT2G21230 | 56.140 | 399 | 120 | 17 | 86 | 448 | 72 | 451 | 3.56e-112 | 340 |
| MS.gene23361.t1 | AT2G40620 | 64.583 | 144 | 50 | 1 | 322 | 465 | 104 | 246 | 1.87e-49 | 174 |
| MS.gene23361.t1 | AT1G06850 | 66.418 | 134 | 43 | 1 | 338 | 469 | 117 | 250 | 1.43e-48 | 171 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 1.76e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT2G31370 | 41.558 | 308 | 126 | 8 | 199 | 506 | 83 | 336 | 3.48e-48 | 172 |
| MS.gene23361.t1 | AT1G06070 | 66.412 | 131 | 42 | 1 | 342 | 470 | 185 | 315 | 8.66e-47 | 169 |
| MS.gene23361.t1 | AT1G43700 | 47.210 | 233 | 93 | 7 | 293 | 509 | 109 | 327 | 1.56e-46 | 166 |
| MS.gene23361.t1 | AT2G12940 | 42.391 | 184 | 96 | 4 | 279 | 461 | 68 | 242 | 2.25e-37 | 139 |
| MS.gene23361.t1 | AT2G13150 | 41.899 | 179 | 96 | 3 | 281 | 459 | 71 | 241 | 3.18e-37 | 138 |
| MS.gene23361.t1 | AT2G12900 | 40.714 | 140 | 75 | 1 | 331 | 462 | 72 | 211 | 7.29e-30 | 118 |
| MS.gene23361.t1 | AT1G06850 | 65.517 | 87 | 28 | 1 | 338 | 422 | 117 | 203 | 1.57e-25 | 105 |
| MS.gene23361.t1 | AT3G58120 | 48.421 | 95 | 49 | 0 | 365 | 459 | 200 | 294 | 4.90e-20 | 91.7 |
| MS.gene23361.t1 | AT2G42380 | 48.421 | 95 | 49 | 0 | 365 | 459 | 184 | 278 | 1.29e-19 | 90.1 |
| MS.gene23361.t1 | AT2G42380 | 47.619 | 84 | 44 | 0 | 365 | 448 | 184 | 267 | 9.98e-17 | 80.9 |
| MS.gene23361.t1 | AT3G58120 | 47.561 | 82 | 43 | 0 | 365 | 446 | 200 | 281 | 4.39e-16 | 79.3 |
| MS.gene23361.t1 | AT2G21235 | 37.107 | 159 | 80 | 4 | 304 | 459 | 309 | 450 | 6.37e-16 | 80.9 |
| MS.gene23361.t1 | AT2G42380 | 44.211 | 95 | 42 | 1 | 365 | 459 | 184 | 267 | 3.85e-14 | 73.9 |
| MS.gene23361.t1 | AT1G58110 | 42.857 | 84 | 48 | 0 | 376 | 459 | 238 | 321 | 7.60e-12 | 67.4 |
| MS.gene23361.t1 | AT1G58110 | 42.857 | 84 | 48 | 0 | 376 | 459 | 238 | 321 | 7.60e-12 | 67.4 |
Find 124 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGGTTATTTCAGGATTT+TGG | 0.101232 | 4.4:-37017591 | MS.gene23361:intron |
| TTGATGTCGCCTGGTAATTC+GGG | 0.265329 | 4.4:-37017823 | MS.gene23361:CDS |
| GTATCGCATCTTGCGCTCTT+TGG | 0.276622 | 4.4:+37017544 | None:intergenic |
| TGCACAACTTACTTTGTTGC+AGG | 0.290633 | 4.4:-37017465 | MS.gene23361:intron |
| GTTGATGTCGCCTGGTAATT+CGG | 0.299723 | 4.4:-37017824 | MS.gene23361:CDS |
| TGGTGAAAAGGGAAACTAAT+TGG | 0.304245 | 4.4:-37018227 | MS.gene23361:CDS |
| GGCATTTGCGGCCGTGAAAC+CGG | 0.329642 | 4.4:+37018579 | None:intergenic |
| CTACTAACAGTTCGCATTTG+TGG | 0.351548 | 4.4:+37018690 | None:intergenic |
| ATCTGAGAGTAAGGTGAAAT+AGG | 0.358249 | 4.4:+37018615 | None:intergenic |
| TGGCTTCAGTCTGCAGAGTC+TGG | 0.376326 | 4.4:+37017498 | None:intergenic |
| GGAACTTCAACTCACTATTC+TGG | 0.380487 | 4.4:+37017148 | None:intergenic |
| TCTAACAGTGATATTCCGTT+TGG | 0.388994 | 4.4:-37018327 | MS.gene23361:CDS |
| TGGTGATAATCGCGATGATT+TGG | 0.392741 | 4.4:-37018079 | MS.gene23361:CDS |
| CTAATTCGTCGGTGGTGAAA+AGG | 0.403499 | 4.4:-37018239 | MS.gene23361:CDS |
| TTGCTACAGCTGAGCTGAAT+GGG | 0.408125 | 4.4:-37015461 | MS.gene23361:CDS |
| GGGATCTGGTGTGGGTGAGA+TGG | 0.410470 | 4.4:+37018639 | None:intergenic |
| GCCGGAGTTGAAGAAAATTA+TGG | 0.416398 | 4.4:-37017746 | MS.gene23361:CDS |
| AAAGAACGAGTTAAAGCAAT+AGG | 0.417310 | 4.4:-37015301 | None:intergenic |
| GAAGGGAATAAGAGAAGTGC+AGG | 0.419487 | 4.4:-37017958 | MS.gene23361:CDS |
| TTGAAGATGCCGCCTTCACC+TGG | 0.419861 | 4.4:-37017850 | MS.gene23361:CDS |
| GCGGATGCTGATGCTGTTGT+TGG | 0.419942 | 4.4:+37015382 | None:intergenic |
| CCTGTTGTTCCATGGATTGA+AGG | 0.422833 | 4.4:+37017124 | None:intergenic |
| CTTTAACTCGTTCTTTGAGT+TGG | 0.425302 | 4.4:+37015308 | None:intergenic |
| CCTTCAATCCATGGAACAAC+AGG | 0.431813 | 4.4:-37017124 | MS.gene23361:CDS |
| TGCTGTTGTTGGAACATCAT+AGG | 0.440652 | 4.4:+37015393 | None:intergenic |
| CTAACAGTGATATTCCGTTT+GGG | 0.448749 | 4.4:-37018326 | MS.gene23361:CDS |
| ATCTGGTGTGGGTGAGATGG+TGG | 0.449378 | 4.4:+37018642 | None:intergenic |
| CAGCACCTCTTAGCCCGCTT+CGG | 0.449837 | 4.4:+37017688 | None:intergenic |
| ACAACAAATGAACAATCATA+TGG | 0.450801 | 4.4:-37018751 | MS.gene23361:CDS |
| CCGCCGTTGATTCCGCTTCG+AGG | 0.450965 | 4.4:-37018279 | MS.gene23361:CDS |
| GTACTATGCGACGGCATTTG+CGG | 0.455092 | 4.4:+37018567 | None:intergenic |
| TGCGGAATCATGCAGTTAGA+AGG | 0.459177 | 4.4:+37015429 | None:intergenic |
| AGAGTAGTGTTAATGAGAGT+GGG | 0.468643 | 4.4:-37017999 | MS.gene23361:CDS |
| TTTGGGAATGGTGAGTTTAG+TGG | 0.469524 | 4.4:-37017769 | MS.gene23361:CDS |
| AAGGTGAAATAGGTGGGATC+TGG | 0.472913 | 4.4:+37018625 | None:intergenic |
| GAAGTTCCGCCTTCAATCCA+TGG | 0.476046 | 4.4:-37017133 | MS.gene23361:CDS |
| TAATTCGTCGGTGGTGAAAA+GGG | 0.477108 | 4.4:-37018238 | MS.gene23361:CDS |
| TCATCCACAACTTCACCTTC+CGG | 0.477852 | 4.4:+37018168 | None:intergenic |
| AGCAGAAATCAAAGAGGAAG+TGG | 0.482492 | 4.4:-37018669 | MS.gene23361:CDS |
| GAAATAGGTGGGATCTGGTG+TGG | 0.483403 | 4.4:+37018630 | None:intergenic |
| TGATTATTCATCTGAGAGTA+AGG | 0.492306 | 4.4:+37018606 | None:intergenic |
| GAGAGTAGTGTTAATGAGAG+TGG | 0.492697 | 4.4:-37018000 | MS.gene23361:CDS |
| AAATAGGTGGGATCTGGTGT+GGG | 0.492947 | 4.4:+37018631 | None:intergenic |
| GGTGAAAAGGGAAACTAATT+GGG | 0.496452 | 4.4:-37018226 | MS.gene23361:CDS |
| GCGAGTGGAACGAAGACTAA+TGG | 0.498624 | 4.4:-37018048 | MS.gene23361:CDS |
| GGATCATGCTGACGTTTCCA+TGG | 0.501467 | 4.4:-37018436 | MS.gene23361:CDS |
| ATTGCTACAGCTGAGCTGAA+TGG | 0.502115 | 4.4:-37015462 | MS.gene23361:CDS |
| CGTTGATTCCGCTTCGAGGA+AGG | 0.502885 | 4.4:-37018275 | MS.gene23361:CDS |
| GATACTATGCAGAGGAGGGA+AGG | 0.503771 | 4.4:-37017976 | MS.gene23361:CDS |
| GCATTTGCGGCCGTGAAACC+GGG | 0.507657 | 4.4:+37018580 | None:intergenic |
| CCTGGAGGGTTGATGTCGCC+TGG | 0.507892 | 4.4:-37017832 | MS.gene23361:CDS |
| TGCTATGGCTGATCCGAAGC+GGG | 0.511052 | 4.4:-37017701 | MS.gene23361:CDS |
| TTGGGAATGGTGAGTTTAGT+GGG | 0.516554 | 4.4:-37017768 | MS.gene23361:CDS |
| TTTAGTTTAGAGTTTGGGAA+TGG | 0.517287 | 4.4:-37017781 | MS.gene23361:CDS |
| CTGATCCGAAGCGGGCTAAG+AGG | 0.529672 | 4.4:-37017693 | MS.gene23361:intron |
| GGGAATAAGAGAAGTGCAGG+AGG | 0.532585 | 4.4:-37017955 | MS.gene23361:CDS |
| ATAATCAGATCCCGGTTTCA+CGG | 0.535436 | 4.4:-37018590 | MS.gene23361:CDS |
| GTTGATTCCGCTTCGAGGAA+GGG | 0.544219 | 4.4:-37018274 | MS.gene23361:CDS |
| AGTGACGTCACGATCTTCCA+TGG | 0.547547 | 4.4:+37018419 | None:intergenic |
| AAGAAATCGTTGTCGCCGGA+AGG | 0.549807 | 4.4:-37018183 | MS.gene23361:CDS |
| GACATCAACCCTCCAGGTGA+AGG | 0.553333 | 4.4:+37017838 | None:intergenic |
| TGCTGTTGTTGTTGATGCTG+CGG | 0.553402 | 4.4:+37015363 | None:intergenic |
| ATACTATGCAGAGGAGGGAA+GGG | 0.554603 | 4.4:-37017975 | MS.gene23361:CDS |
| GAAGGGTTTCTAGCAGCAAA+CGG | 0.556191 | 4.4:+37018378 | None:intergenic |
| CATCAACAACAGCAGCAGAA+TGG | 0.558598 | 4.4:-37015336 | MS.gene23361:CDS |
| GAATGGTGAGTTTAGTGGGC+CGG | 0.563027 | 4.4:-37017764 | MS.gene23361:CDS |
| GAAGATTCGCGAAACGTGCA+AGG | 0.565171 | 4.4:+37018468 | None:intergenic |
| GAGTAGTGTTAATGAGAGTG+GGG | 0.567227 | 4.4:-37017998 | MS.gene23361:CDS |
| TGATGTCGCCTGGTAATTCG+GGG | 0.567782 | 4.4:-37017822 | MS.gene23361:CDS |
| CTAGCAGCAAACGGAGGCAA+CGG | 0.571219 | 4.4:+37018387 | None:intergenic |
| GAATGAGGCGCTTACTGCCG+AGG | 0.573329 | 4.4:-37015499 | MS.gene23361:CDS |
| AATCTTCAGTCTTTGAACCT+CGG | 0.578364 | 4.4:+37015482 | None:intergenic |
| GTGGGGATACTATGCAGAGG+AGG | 0.579437 | 4.4:-37017981 | MS.gene23361:CDS |
| ACATTATAGAAGTGTTTCGA+TGG | 0.580671 | 4.4:-37017911 | MS.gene23361:CDS |
| TGAGAGTAAGGTGAAATAGG+TGG | 0.582251 | 4.4:+37018618 | None:intergenic |
| CTTCCTCGAAGCGGAATCAA+CGG | 0.584470 | 4.4:+37018276 | None:intergenic |
| GAGAGTAAGGTGAAATAGGT+GGG | 0.588611 | 4.4:+37018619 | None:intergenic |
| CCAGGCGACATCAACCCTCC+AGG | 0.588772 | 4.4:+37017832 | None:intergenic |
| GCAACTTCCCTTCCTCGAAG+CGG | 0.591727 | 4.4:+37018267 | None:intergenic |
| ATCAACCCTCCAGGTGAAGG+CGG | 0.596866 | 4.4:+37017841 | None:intergenic |
| CTTCTATAATGTCTCGTAGT+CGG | 0.597005 | 4.4:+37017922 | None:intergenic |
| AACGTGCAAGGGCTGAGAGG+CGG | 0.597136 | 4.4:+37018480 | None:intergenic |
| AGATGCCGCCTTCACCTGGA+GGG | 0.599939 | 4.4:-37017846 | MS.gene23361:CDS |
| GGAGAAGAAATCGTTGTCGC+CGG | 0.600332 | 4.4:-37018187 | MS.gene23361:CDS |
| CATTTCAGAGCTAGAACACA+AGG | 0.603689 | 4.4:-37017522 | MS.gene23361:CDS |
| TGATGCATTAAAGTGTGGTA+TGG | 0.606399 | 4.4:+37018719 | None:intergenic |
| TCAGATGAATAATCAGATCC+CGG | 0.607400 | 4.4:-37018598 | MS.gene23361:CDS |
| GTCAGCATGATCCGACGTGG+AGG | 0.611432 | 4.4:+37018446 | None:intergenic |
| AAGATGCCGCCTTCACCTGG+AGG | 0.614128 | 4.4:-37017847 | MS.gene23361:CDS |
| TGGGGATACTATGCAGAGGA+GGG | 0.616806 | 4.4:-37017980 | MS.gene23361:CDS |
| GATCGTGTGTGGGAAGGTGT+AGG | 0.618822 | 4.4:+37018540 | None:intergenic |
| GTTAGTAGCAGAAATCAAAG+AGG | 0.620000 | 4.4:-37018675 | MS.gene23361:CDS |
| GATTGAAAGAAATACCATCT+CGG | 0.625004 | 4.4:+37017094 | None:intergenic |
| TTGGGAACATAGTAATGTAG+AGG | 0.627338 | 4.4:-37018208 | MS.gene23361:CDS |
| GAGAGTGATCGTGTGTGGGA+AGG | 0.627896 | 4.4:+37018534 | None:intergenic |
| GAAACTTGCTGAGATTGCTA+TGG | 0.628174 | 4.4:-37017716 | MS.gene23361:CDS |
| TCATCTAATAGCTCTGAATG+AGG | 0.629687 | 4.4:-37015514 | MS.gene23361:intron |
| GATTTGGACAGTAGAGCGAG+TGG | 0.629856 | 4.4:-37018063 | MS.gene23361:CDS |
| GTTGAGAGAGTGATCGTGTG+TGG | 0.632845 | 4.4:+37018529 | None:intergenic |
| TGTATGCAGAGAGATTCAGT+TGG | 0.633937 | 4.4:-37017180 | MS.gene23361:intron |
| TGCTACAGCTGAGCTGAATG+GGG | 0.641201 | 4.4:-37015460 | MS.gene23361:CDS |
| AAAACAGTAGAAAACCCAAA+CGG | 0.641659 | 4.4:+37018312 | None:intergenic |
| AGTTGCTAAACCTAATTCGT+CGG | 0.641686 | 4.4:-37018250 | MS.gene23361:CDS |
| GTTGTTCCATGGATTGAAGG+CGG | 0.649555 | 4.4:+37017127 | None:intergenic |
| TGCTAAACCTAATTCGTCGG+TGG | 0.650048 | 4.4:-37018247 | MS.gene23361:CDS |
| CGAAACGTGCAAGGGCTGAG+AGG | 0.651618 | 4.4:+37018477 | None:intergenic |
| GTAGGACTTGTACTATGCGA+CGG | 0.653735 | 4.4:+37018558 | None:intergenic |
| TTGCTATGGCTGATCCGAAG+CGG | 0.654077 | 4.4:-37017702 | MS.gene23361:CDS |
| TCGCGAATCTTCCTCCACGT+CGG | 0.657479 | 4.4:-37018457 | MS.gene23361:CDS |
| CAACAGGCAAAACTCCGAGA+TGG | 0.660037 | 4.4:-37017108 | MS.gene23361:intron |
| TCCCGCCGAGAAAATCTCAC+CGG | 0.660992 | 4.4:-37018353 | MS.gene23361:CDS |
| GATGTCGCCTGGTAATTCGG+GGG | 0.663897 | 4.4:-37017821 | MS.gene23361:CDS |
| AAGTTGTGCAGAAAGTGTAG+TGG | 0.665732 | 4.4:+37017478 | None:intergenic |
| AAGATTCGCGAAACGTGCAA+GGG | 0.666107 | 4.4:+37018469 | None:intergenic |
| TTGAGAGAGTGATCGTGTGT+GGG | 0.674945 | 4.4:+37018530 | None:intergenic |
| ATAGGATTGACAGAATGTTG+CGG | 0.677622 | 4.4:+37015411 | None:intergenic |
| TGTGATGATGCATTAAAGTG+TGG | 0.678486 | 4.4:+37018714 | None:intergenic |
| GTCGCCGGAAGGTGAAGTTG+TGG | 0.681642 | 4.4:-37018172 | MS.gene23361:CDS |
| AGTGGAACGAAGACTAATGG+TGG | 0.685995 | 4.4:-37018045 | MS.gene23361:CDS |
| AACGTCAGCATGATCCGACG+TGG | 0.690918 | 4.4:+37018443 | None:intergenic |
| GAATATCACTGTTAGAACGC+CGG | 0.693141 | 4.4:+37018334 | None:intergenic |
| CCTCGAAGCGGAATCAACGG+CGG | 0.693770 | 4.4:+37018279 | None:intergenic |
| GGGTTTCTAGCAGCAAACGG+AGG | 0.696020 | 4.4:+37018381 | None:intergenic |
| AGAGTGGGGATACTATGCAG+AGG | 0.714021 | 4.4:-37017984 | MS.gene23361:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAATGAATTAATAA+AGG | + | chr4.4:37017977-37017996 | None:intergenic | 10.0% |
| !! | TTTGAAAATGAATTAATAAA+GGG | + | chr4.4:37017976-37017995 | None:intergenic | 10.0% |
| !! | TTGAAAATGAATTAATAAAG+GGG | + | chr4.4:37017975-37017994 | None:intergenic | 15.0% |
| !!! | AAAAAAACATATTTTGGTTA+TGG | - | chr4.4:37017890-37017909 | MS.gene23361:CDS | 15.0% |
| !!! | TAATTCATTTTCAAATTTCT+GGG | - | chr4.4:37017981-37018000 | MS.gene23361:CDS | 15.0% |
| !!! | TATGAGAAAAAAACATATTT+TGG | - | chr4.4:37017884-37017903 | MS.gene23361:CDS | 15.0% |
| !!! | TCATAGAATTTTTAAAAATG+TGG | - | chr4.4:37017194-37017213 | MS.gene23361:intron | 15.0% |
| !!! | TTAATTCATTTTCAAATTTC+TGG | - | chr4.4:37017980-37017999 | MS.gene23361:CDS | 15.0% |
| !!! | TTTTCTTTTTCTTTTAGAAT+CGG | + | chr4.4:37017643-37017662 | None:intergenic | 15.0% |
| !! | AAACAATTAAACATCAGTAA+TGG | + | chr4.4:37017946-37017965 | None:intergenic | 20.0% |
| !! | AAACATAATTAGCTATGTAA+AGG | + | chr4.4:37018290-37018309 | None:intergenic | 20.0% |
| !! | AAACCAAATAGTGTTATAAT+AGG | + | chr4.4:37018215-37018234 | None:intergenic | 20.0% |
| !! | AATCCTATTATAACACTATT+TGG | - | chr4.4:37018209-37018228 | MS.gene23361:CDS | 20.0% |
| !! | TTTGTAGTTTCATAAAATCA+CGG | - | chr4.4:37018130-37018149 | MS.gene23361:CDS | 20.0% |
| !!! | AATTCATTTTCAAATTTCTG+GGG | - | chr4.4:37017982-37018001 | MS.gene23361:CDS | 20.0% |
| !!! | ATATTTTTTTGGGTTATTTC+AGG | - | chr4.4:37016493-37016512 | MS.gene23361:intron | 20.0% |
| !!! | CTTGATGTTAATTTGAATTT+CGG | - | chr4.4:37017764-37017783 | MS.gene23361:CDS | 20.0% |
| !!! | TTTGACTTGGATATTTTTTT+GGG | - | chr4.4:37016483-37016502 | MS.gene23361:intron | 20.0% |
| !!! | TTTTGACTTGGATATTTTTT+TGG | - | chr4.4:37016482-37016501 | MS.gene23361:intron | 20.0% |
| !!! | TTTTTCTGCTTATATGAATT+TGG | - | chr4.4:37015949-37015968 | MS.gene23361:intron | 20.0% |
| ! | AAATTAACATCAAGGAAAAC+TGG | + | chr4.4:37017758-37017777 | None:intergenic | 25.0% |
| ! | ACAACAAATGAACAATCATA+TGG | - | chr4.4:37015340-37015359 | MS.gene23361:CDS | 25.0% |
| ! | CGAAATTCAAATTAACATCA+AGG | + | chr4.4:37017766-37017785 | None:intergenic | 25.0% |
| ! | TATATTTCCAGCTTAAGTTT+GGG | - | chr4.4:37017430-37017449 | MS.gene23361:intron | 25.0% |
| ! | TATTCATAATACAAGCAAGT+AGG | + | chr4.4:37017280-37017299 | None:intergenic | 25.0% |
| ! | TTATATTTCCAGCTTAAGTT+TGG | - | chr4.4:37017429-37017448 | MS.gene23361:intron | 25.0% |
| !! | ACAATTTTAGACTTAGTAGT+AGG | - | chr4.4:37018507-37018526 | MS.gene23361:CDS | 25.0% |
| !! | ACTAAGTCTAAAATTGTTTG+TGG | + | chr4.4:37018504-37018523 | None:intergenic | 25.0% |
| !! | TATAGTTAGTTTCAGCAAAA+GGG | + | chr4.4:37018257-37018276 | None:intergenic | 25.0% |
| !! | TGCAACTCATTTTATGTTTA+TGG | - | chr4.4:37017064-37017083 | MS.gene23361:intron | 25.0% |
| !! | TTATAGTTAGTTTCAGCAAA+AGG | + | chr4.4:37018258-37018277 | None:intergenic | 25.0% |
| !! | TTTTCTTTATGTAGGTTACT+TGG | - | chr4.4:37018037-37018056 | MS.gene23361:CDS | 25.0% |
| !!! | ATTCATTTTCAAATTTCTGG+GGG | - | chr4.4:37017983-37018002 | MS.gene23361:CDS | 25.0% |
| !!! | GATTTTGTTGTAATGTAAGA+AGG | - | chr4.4:37017124-37017143 | MS.gene23361:CDS | 25.0% |
| !!! | TTTCACGTTGATAATGTTTT+GGG | - | chr4.4:37016812-37016831 | MS.gene23361:intron | 25.0% |
| !!! | TTTCGATGGATAGTTTTATT+GGG | - | chr4.4:37016194-37016213 | MS.gene23361:intron | 25.0% |
| !!! | TTTTCACGTTGATAATGTTT+TGG | - | chr4.4:37016811-37016830 | MS.gene23361:intron | 25.0% |
| AAAACAGTAGAAAACCCAAA+CGG | + | chr4.4:37015782-37015801 | None:intergenic | 30.0% | |
| ATTCCGTTATTTACCTCAAA+AGG | + | chr4.4:37017324-37017343 | None:intergenic | 30.0% | |
| CTAAGTAATATCTTTGAGTC+AGG | - | chr4.4:37018010-37018029 | MS.gene23361:CDS | 30.0% | |
| GATAGTAGACAAAATCAAGA+TGG | - | chr4.4:37017233-37017252 | MS.gene23361:intron | 30.0% | |
| GATTGAAAGAAATACCATCT+CGG | + | chr4.4:37017000-37017019 | None:intergenic | 30.0% | |
| GCTTGTATTATGAATAGAGT+TGG | - | chr4.4:37017284-37017303 | MS.gene23361:intron | 30.0% | |
| TCTGCATACACAAAAAAGAT+AGG | + | chr4.4:37016901-37016920 | None:intergenic | 30.0% | |
| TGATTATTCATCTGAGAGTA+AGG | + | chr4.4:37015488-37015507 | None:intergenic | 30.0% | |
| TGTGTTAATTAGGTGCATAT+CGG | - | chr4.4:37017483-37017502 | MS.gene23361:CDS | 30.0% | |
| TTAACTTCAACTCACTATTC+TGG | + | chr4.4:37016843-37016862 | None:intergenic | 30.0% | |
| TTTAGATAGTAATGTCGACA+CGG | - | chr4.4:37016451-37016470 | MS.gene23361:intron | 30.0% | |
| ! | TTCATAGGAGTGTGTTAATT+AGG | - | chr4.4:37017473-37017492 | MS.gene23361:CDS | 30.0% |
| ! | TTGTTGTTGACGAGATATTA+TGG | + | chr4.4:37018449-37018468 | None:intergenic | 30.0% |
| ! | TTTAGTTTAGAGTTTGGGAA+TGG | - | chr4.4:37016310-37016329 | MS.gene23361:intron | 30.0% |
| ! | TTTGTTGTAATGTAAGAAGG+TGG | - | chr4.4:37017127-37017146 | MS.gene23361:CDS | 30.0% |
| !! | ACATTATAGAAGTGTTTCGA+TGG | - | chr4.4:37016180-37016199 | MS.gene23361:intron | 30.0% |
| !! | TTTGGGTTATTTCAGGATTT+TGG | - | chr4.4:37016500-37016519 | MS.gene23361:intron | 30.0% |
| !! | TTTTTGGAAATAAGCATCCT+GGG | - | chr4.4:37018326-37018345 | MS.gene23361:CDS | 30.0% |
| !!! | ATTTCAGGATTTTGGCTAAT+AGG | - | chr4.4:37016508-37016527 | MS.gene23361:intron | 30.0% |
| !!! | GTTTCGATGGATAGTTTTAT+TGG | - | chr4.4:37016193-37016212 | MS.gene23361:intron | 30.0% |
| !!! | TGTGAATGCATGTTTTAGTT+TGG | - | chr4.4:37016669-37016688 | MS.gene23361:intron | 30.0% |
| !!! | TTGCCTTTTGAGGTAAATAA+CGG | - | chr4.4:37017318-37017337 | MS.gene23361:intron | 30.0% |
| AAAAATGTGGTGAGAGATGT+AGG | - | chr4.4:37017207-37017226 | MS.gene23361:intron | 35.0% | |
| AAAGTTTGTATGACGAAGTG+TGG | - | chr4.4:37017709-37017728 | MS.gene23361:CDS | 35.0% | |
| AAGGGTAAACATGCATTTGA+AGG | + | chr4.4:37018239-37018258 | None:intergenic | 35.0% | |
| AATCAAGATGGAGTTTGGTT+AGG | - | chr4.4:37017245-37017264 | MS.gene23361:intron | 35.0% | |
| AATCTTCAGTCTTTGAACCT+CGG | + | chr4.4:37018612-37018631 | None:intergenic | 35.0% | |
| ACACTTCGTCATACAAACTT+TGG | + | chr4.4:37017710-37017729 | None:intergenic | 35.0% | |
| AGAGTAGTGTTAATGAGAGT+GGG | - | chr4.4:37016092-37016111 | MS.gene23361:intron | 35.0% | |
| AGCAGAAAGGCTCTATAATT+GGG | - | chr4.4:37017352-37017371 | MS.gene23361:intron | 35.0% | |
| AGTTGCTAAACCTAATTCGT+CGG | - | chr4.4:37015841-37015860 | MS.gene23361:intron | 35.0% | |
| ATAGGATTGACAGAATGTTG+CGG | + | chr4.4:37018683-37018702 | None:intergenic | 35.0% | |
| ATCTGAGAGTAAGGTGAAAT+AGG | + | chr4.4:37015479-37015498 | None:intergenic | 35.0% | |
| ATCTTGATTGACGATGAGTT+CGG | + | chr4.4:37018174-37018193 | None:intergenic | 35.0% | |
| ATGAATGTAGATTCCTGACA+CGG | - | chr4.4:37017682-37017701 | MS.gene23361:intron | 35.0% | |
| ATGTAAGAAGGTGGCTAATT+TGG | - | chr4.4:37017136-37017155 | MS.gene23361:CDS | 35.0% | |
| CGGAGAAAAACACAATACAA+AGG | + | chr4.4:37017580-37017599 | None:intergenic | 35.0% | |
| CTAACAGTGATATTCCGTTT+GGG | - | chr4.4:37015765-37015784 | MS.gene23361:intron | 35.0% | |
| CTTCTATAATGTCTCGTAGT+CGG | + | chr4.4:37016172-37016191 | None:intergenic | 35.0% | |
| CTTTAACTCGTTCTTTGAGT+TGG | + | chr4.4:37018786-37018805 | None:intergenic | 35.0% | |
| GACAAAATCAAGATGGAGTT+TGG | - | chr4.4:37017240-37017259 | MS.gene23361:intron | 35.0% | |
| GGTGAAAAGGGAAACTAATT+GGG | - | chr4.4:37015865-37015884 | MS.gene23361:intron | 35.0% | |
| GGTTGTCTTCTTTGAACTTT+AGG | - | chr4.4:37017526-37017545 | MS.gene23361:CDS | 35.0% | |
| GTTAGTAGCAGAAATCAAAG+AGG | - | chr4.4:37015416-37015435 | MS.gene23361:CDS | 35.0% | |
| GTTGAAGTTAACACAAATGC+AGG | - | chr4.4:37016852-37016871 | MS.gene23361:intron | 35.0% | |
| TAAGCCATCCTTTGATATTG+CGG | - | chr4.4:37016723-37016742 | MS.gene23361:intron | 35.0% | |
| TCAGATGAATAATCAGATCC+CGG | - | chr4.4:37015493-37015512 | MS.gene23361:CDS | 35.0% | |
| TCATTCAGAGCTATTAGATG+AGG | + | chr4.4:37018578-37018597 | None:intergenic | 35.0% | |
| TCTAACAGTGATATTCCGTT+TGG | - | chr4.4:37015764-37015783 | MS.gene23361:intron | 35.0% | |
| TGAATAGAGTTGGAATCCTA+AGG | - | chr4.4:37017294-37017313 | MS.gene23361:intron | 35.0% | |
| TGATGCATTAAAGTGTGGTA+TGG | + | chr4.4:37015375-37015394 | None:intergenic | 35.0% | |
| TGGTGAAAAGGGAAACTAAT+TGG | - | chr4.4:37015864-37015883 | MS.gene23361:intron | 35.0% | |
| TTGGGAACATAGTAATGTAG+AGG | - | chr4.4:37015883-37015902 | MS.gene23361:intron | 35.0% | |
| ! | CAGGTAGCTTTTCTTTATGT+AGG | - | chr4.4:37018029-37018048 | MS.gene23361:CDS | 35.0% |
| ! | GCCATAATTTTCTTCAACTC+CGG | + | chr4.4:37016349-37016368 | None:intergenic | 35.0% |
| ! | TGAGGTAAATAACGGAATCT+AGG | - | chr4.4:37017326-37017345 | MS.gene23361:intron | 35.0% |
| ! | TGTGATGATGCATTAAAGTG+TGG | + | chr4.4:37015380-37015399 | None:intergenic | 35.0% |
| !! | GTTTTTGGAAATAAGCATCC+TGG | - | chr4.4:37018325-37018344 | MS.gene23361:CDS | 35.0% |
| !! | TCATCTAATAGCTCTGAATG+AGG | - | chr4.4:37018577-37018596 | MS.gene23361:CDS | 35.0% |
| !!! | ACGGATGGTTAATTTTGACT+TGG | - | chr4.4:37016470-37016489 | MS.gene23361:intron | 35.0% |
| !!! | CGGCTTTTAGTTTAGAGTTT+GGG | - | chr4.4:37016305-37016324 | MS.gene23361:intron | 35.0% |
| AAAACACGCCGCAATATCAA+AGG | + | chr4.4:37016734-37016753 | None:intergenic | 40.0% | |
| ACAACTTACTTTGTTGCAGG+TGG | - | chr4.4:37016629-37016648 | MS.gene23361:intron | 40.0% | |
| AGCAGAAATCAAAGAGGAAG+TGG | - | chr4.4:37015422-37015441 | MS.gene23361:CDS | 40.0% | |
| AGGATAGCCATATCACTGTA+TGG | + | chr4.4:37017560-37017579 | None:intergenic | 40.0% | |
| ATAATCAGATCCCGGTTTCA+CGG | - | chr4.4:37015501-37015520 | MS.gene23361:CDS | 40.0% | |
| ATCTTCCAATGCTAAACAGG+CGG | + | chr4.4:37017802-37017821 | None:intergenic | 40.0% | |
| ATGAGTTCGGCAACAAATCA+TGG | + | chr4.4:37018161-37018180 | None:intergenic | 40.0% | |
| CAACTTACTTTGTTGCAGGT+GGG | - | chr4.4:37016630-37016649 | MS.gene23361:intron | 40.0% | |
| CACAAATGCAGGTTCAAACA+TGG | - | chr4.4:37016863-37016882 | MS.gene23361:intron | 40.0% | |
| CAGCAGAAAGGCTCTATAAT+TGG | - | chr4.4:37017351-37017370 | MS.gene23361:intron | 40.0% | |
| CATTTCAGAGCTAGAACACA+AGG | - | chr4.4:37016569-37016588 | MS.gene23361:intron | 40.0% | |
| CCAAAATCATGGTAGACTAC+CGG | + | chr4.4:37018098-37018117 | None:intergenic | 40.0% | |
| CTACTAACAGTTCGCATTTG+TGG | + | chr4.4:37015404-37015423 | None:intergenic | 40.0% | |
| GAAAGCAGATGTAGAGTAGT+TGG | - | chr4.4:37018348-37018367 | MS.gene23361:CDS | 40.0% | |
| GAATATCACTGTTAGAACGC+CGG | + | chr4.4:37015760-37015779 | None:intergenic | 40.0% | |
| GAGAGTAAGGTGAAATAGGT+GGG | + | chr4.4:37015475-37015494 | None:intergenic | 40.0% | |
| GAGAGTAGTGTTAATGAGAG+TGG | - | chr4.4:37016091-37016110 | MS.gene23361:intron | 40.0% | |
| GAGTAGTGTTAATGAGAGTG+GGG | - | chr4.4:37016093-37016112 | MS.gene23361:intron | 40.0% | |
| GATGATAAAAACGCAGCTAC+TGG | - | chr4.4:37015992-37016011 | MS.gene23361:intron | 40.0% | |
| GCCGGAGTTGAAGAAAATTA+TGG | - | chr4.4:37016345-37016364 | MS.gene23361:intron | 40.0% | |
| GCTGTTACCATACAGTGATA+TGG | - | chr4.4:37017550-37017569 | MS.gene23361:CDS | 40.0% | |
| GGAACTTCAACTCACTATTC+TGG | + | chr4.4:37016946-37016965 | None:intergenic | 40.0% | |
| TAAGTTTGGGTGTTTGGTCA+AGG | - | chr4.4:37017443-37017462 | MS.gene23361:intron | 40.0% | |
| TAATTCGTCGGTGGTGAAAA+GGG | - | chr4.4:37015853-37015872 | MS.gene23361:intron | 40.0% | |
| TACCTCAAAAGGCAATCCTT+AGG | + | chr4.4:37017313-37017332 | None:intergenic | 40.0% | |
| TATGGAATGAGCATTACAGC+CGG | - | chr4.4:37017908-37017927 | MS.gene23361:CDS | 40.0% | |
| TGAGAGTAAGGTGAAATAGG+TGG | + | chr4.4:37015476-37015495 | None:intergenic | 40.0% | |
| TGCACAACTTACTTTGTTGC+AGG | - | chr4.4:37016626-37016645 | MS.gene23361:intron | 40.0% | |
| TGCTGTTGTTGGAACATCAT+AGG | + | chr4.4:37018701-37018720 | None:intergenic | 40.0% | |
| TGGTGATAATCGCGATGATT+TGG | - | chr4.4:37016012-37016031 | MS.gene23361:intron | 40.0% | |
| TGTATGCAGAGAGATTCAGT+TGG | - | chr4.4:37016911-37016930 | MS.gene23361:intron | 40.0% | |
| TTGGGAATGGTGAGTTTAGT+GGG | - | chr4.4:37016323-37016342 | MS.gene23361:intron | 40.0% | |
| TTTGGGAATGGTGAGTTTAG+TGG | - | chr4.4:37016322-37016341 | MS.gene23361:intron | 40.0% | |
| ! | AAGTTGTGCAGAAAGTGTAG+TGG | + | chr4.4:37016616-37016635 | None:intergenic | 40.0% |
| ! | ATCCTAAGGATTGCCTTTTG+AGG | - | chr4.4:37017308-37017327 | MS.gene23361:intron | 40.0% |
| ! | CCTGTTTAGCATTGGAAGAT+GGG | - | chr4.4:37017802-37017821 | MS.gene23361:CDS | 40.0% |
| ! | CGGCGTGTTTTGTAAAATTG+CGG | - | chr4.4:37016743-37016762 | MS.gene23361:intron | 40.0% |
| ! | CGTAGCTTTTGCCAAAATCA+TGG | + | chr4.4:37018109-37018128 | None:intergenic | 40.0% |
| ! | CGTGTTTTGTAAAATTGCGG+TGG | - | chr4.4:37016746-37016765 | MS.gene23361:intron | 40.0% |
| ! | GTAATGGAATCAGCAAATCC+CGG | + | chr4.4:37017930-37017949 | None:intergenic | 40.0% |
| !! | GAAACTTGCTGAGATTGCTA+TGG | - | chr4.4:37016375-37016394 | MS.gene23361:intron | 40.0% |
| !! | TAGGTTACTTGGTGCATGTT+TGG | - | chr4.4:37018048-37018067 | MS.gene23361:CDS | 40.0% |
| !!! | GCGGCTTTTAGTTTAGAGTT+TGG | - | chr4.4:37016304-37016323 | MS.gene23361:intron | 40.0% |
| !!! | GTAAGAGTTGCTGCTGTTTT+TGG | - | chr4.4:37018310-37018329 | MS.gene23361:CDS | 40.0% |
| !!! | GTTGGTTTTCTGTTCGCATT+TGG | - | chr4.4:37018366-37018385 | MS.gene23361:CDS | 40.0% |
| AAATAGGTGGGATCTGGTGT+GGG | + | chr4.4:37015463-37015482 | None:intergenic | 45.0% | |
| AAGATTCGCGAAACGTGCAA+GGG | + | chr4.4:37015625-37015644 | None:intergenic | 45.0% | |
| AAGGTGAAATAGGTGGGATC+TGG | + | chr4.4:37015469-37015488 | None:intergenic | 45.0% | |
| AAGGTGGCTAATTTGGCATG+CGG | - | chr4.4:37017143-37017162 | MS.gene23361:CDS | 45.0% | |
| AATTTGGCATGCGGCGATTT+GGG | - | chr4.4:37017152-37017171 | MS.gene23361:CDS | 45.0% | |
| ACAAACTTTGGTACCGTGTC+AGG | + | chr4.4:37017698-37017717 | None:intergenic | 45.0% | |
| AGTGGAACGAAGACTAATGG+TGG | - | chr4.4:37016046-37016065 | MS.gene23361:intron | 45.0% | |
| ATACTATGCAGAGGAGGGAA+GGG | - | chr4.4:37016116-37016135 | MS.gene23361:intron | 45.0% | |
| ATGGAATGAGCATTACAGCC+GGG | - | chr4.4:37017909-37017928 | MS.gene23361:CDS | 45.0% | |
| ATTGCTACAGCTGAGCTGAA+TGG | - | chr4.4:37018629-37018648 | MS.gene23361:CDS | 45.0% | |
| CAGTGAGATTGGCAGAATTC+CGG | - | chr4.4:37018076-37018095 | MS.gene23361:CDS | 45.0% | |
| CATCAACAACAGCAGCAGAA+TGG | - | chr4.4:37018755-37018774 | MS.gene23361:CDS | 45.0% | |
| CCAAACACCCAAACTTAAGC+TGG | + | chr4.4:37017440-37017459 | None:intergenic | 45.0% | |
| CCAGCTTAAGTTTGGGTGTT+TGG | - | chr4.4:37017437-37017456 | MS.gene23361:intron | 45.0% | |
| CCCATCTTCCAATGCTAAAC+AGG | + | chr4.4:37017805-37017824 | None:intergenic | 45.0% | |
| CCTTCAATCCATGGAACAAC+AGG | - | chr4.4:37016967-37016986 | MS.gene23361:intron | 45.0% | |
| CTAATTCGTCGGTGGTGAAA+AGG | - | chr4.4:37015852-37015871 | MS.gene23361:intron | 45.0% | |
| GAGTCGAGCGAGAAAAAAGA+CGG | + | chr4.4:37015587-37015606 | None:intergenic | 45.0% | |
| GATAGTAATGTCGACACGGA+TGG | - | chr4.4:37016455-37016474 | MS.gene23361:intron | 45.0% | |
| GTAGGACTTGTACTATGCGA+CGG | + | chr4.4:37015536-37015555 | None:intergenic | 45.0% | |
| GTTGATGTCGCCTGGTAATT+CGG | - | chr4.4:37016267-37016286 | MS.gene23361:intron | 45.0% | |
| GTTTGGATCAGCAGTGAGAT+TGG | - | chr4.4:37018065-37018084 | MS.gene23361:CDS | 45.0% | |
| TAATTTGGCATGCGGCGATT+TGG | - | chr4.4:37017151-37017170 | MS.gene23361:CDS | 45.0% | |
| TACTCTACATCTGCTTTCCC+AGG | + | chr4.4:37018346-37018365 | None:intergenic | 45.0% | |
| TCATCCACAACTTCACCTTC+CGG | + | chr4.4:37015926-37015945 | None:intergenic | 45.0% | |
| TGCGGAATCATGCAGTTAGA+AGG | + | chr4.4:37018665-37018684 | None:intergenic | 45.0% | |
| TGCTAAACCTAATTCGTCGG+TGG | - | chr4.4:37015844-37015863 | MS.gene23361:intron | 45.0% | |
| TTAAGCCGCCTGTTTAGCAT+TGG | - | chr4.4:37017794-37017813 | MS.gene23361:CDS | 45.0% | |
| TTGAGAGAGTGATCGTGTGT+GGG | + | chr4.4:37015564-37015583 | None:intergenic | 45.0% | |
| TTGATGTCGCCTGGTAATTC+GGG | - | chr4.4:37016268-37016287 | MS.gene23361:intron | 45.0% | |
| TTGCTACAGCTGAGCTGAAT+GGG | - | chr4.4:37018630-37018649 | MS.gene23361:CDS | 45.0% | |
| ! | CCGGTAGTCTACCATGATTT+TGG | - | chr4.4:37018095-37018114 | MS.gene23361:CDS | 45.0% |
| ! | CCTGTTGTTCCATGGATTGA+AGG | + | chr4.4:37016970-37016989 | None:intergenic | 45.0% |
| ! | CTTTTCACCACCGACGAATT+AGG | + | chr4.4:37015854-37015873 | None:intergenic | 45.0% |
| ! | GAAGGGAATAAGAGAAGTGC+AGG | - | chr4.4:37016133-37016152 | MS.gene23361:intron | 45.0% |
| ! | GAGTTTTGCCTGTTGTTCCA+TGG | + | chr4.4:37016978-37016997 | None:intergenic | 45.0% |
| ! | GCCTGTTTAGCATTGGAAGA+TGG | - | chr4.4:37017801-37017820 | MS.gene23361:CDS | 45.0% |
| ! | GTGCATATCGGTTGTTCTCA+GGG | - | chr4.4:37017495-37017514 | MS.gene23361:CDS | 45.0% |
| ! | GTTGTTCCATGGATTGAAGG+CGG | + | chr4.4:37016967-37016986 | None:intergenic | 45.0% |
| ! | TGCTGTTGTTGTTGATGCTG+CGG | + | chr4.4:37018731-37018750 | None:intergenic | 45.0% |
| !! | AGCATTGGAAGATGGGTTGT+AGG | - | chr4.4:37017809-37017828 | MS.gene23361:CDS | 45.0% |
| !! | GAAGGGTTTCTAGCAGCAAA+CGG | + | chr4.4:37015716-37015735 | None:intergenic | 45.0% |
| AAGAAATCGTTGTCGCCGGA+AGG | - | chr4.4:37015908-37015927 | MS.gene23361:intron | 50.0% | |
| AGAGTGGGGATACTATGCAG+AGG | - | chr4.4:37016107-37016126 | MS.gene23361:intron | 50.0% | |
| AGTGACGTCACGATCTTCCA+TGG | + | chr4.4:37015675-37015694 | None:intergenic | 50.0% | |
| CAACAGGCAAAACTCCGAGA+TGG | - | chr4.4:37016983-37017002 | MS.gene23361:intron | 50.0% | |
| CACGCCGCAATATCAAAGGA+TGG | + | chr4.4:37016730-37016749 | None:intergenic | 50.0% | |
| CTTCCTCGAAGCGGAATCAA+CGG | + | chr4.4:37015818-37015837 | None:intergenic | 50.0% | |
| GAAATAGGTGGGATCTGGTG+TGG | + | chr4.4:37015464-37015483 | None:intergenic | 50.0% | |
| GAAGATTCGCGAAACGTGCA+AGG | + | chr4.4:37015626-37015645 | None:intergenic | 50.0% | |
| GAAGTTCCGCCTTCAATCCA+TGG | - | chr4.4:37016958-37016977 | MS.gene23361:intron | 50.0% | |
| GATACTATGCAGAGGAGGGA+AGG | - | chr4.4:37016115-37016134 | MS.gene23361:intron | 50.0% | |
| GATTTGGACAGTAGAGCGAG+TGG | - | chr4.4:37016028-37016047 | MS.gene23361:intron | 50.0% | |
| GCGAGTGGAACGAAGACTAA+TGG | - | chr4.4:37016043-37016062 | MS.gene23361:intron | 50.0% | |
| GGAATCTAGGAGCAGCAGAA+AGG | - | chr4.4:37017339-37017358 | MS.gene23361:intron | 50.0% | |
| GGAGAAGAAATCGTTGTCGC+CGG | - | chr4.4:37015904-37015923 | MS.gene23361:intron | 50.0% | |
| GGATCATGCTGACGTTTCCA+TGG | - | chr4.4:37015655-37015674 | MS.gene23361:intron | 50.0% | |
| GTACTATGCGACGGCATTTG+CGG | + | chr4.4:37015527-37015546 | None:intergenic | 50.0% | |
| GTATCGCATCTTGCGCTCTT+TGG | + | chr4.4:37016550-37016569 | None:intergenic | 50.0% | |
| GTTGAGAGAGTGATCGTGTG+TGG | + | chr4.4:37015565-37015584 | None:intergenic | 50.0% | |
| GTTGTTCTCAGGGAGTCTCT+TGG | - | chr4.4:37017505-37017524 | MS.gene23361:CDS | 50.0% | |
| GTTTGGGTGTTTGGTCAAGG+CGG | - | chr4.4:37017446-37017465 | MS.gene23361:intron | 50.0% | |
| TGATGTCGCCTGGTAATTCG+GGG | - | chr4.4:37016269-37016288 | MS.gene23361:intron | 50.0% | |
| TGCTACAGCTGAGCTGAATG+GGG | - | chr4.4:37018631-37018650 | MS.gene23361:CDS | 50.0% | |
| TGGGGATACTATGCAGAGGA+GGG | - | chr4.4:37016111-37016130 | MS.gene23361:intron | 50.0% | |
| TTGCTATGGCTGATCCGAAG+CGG | - | chr4.4:37016389-37016408 | MS.gene23361:intron | 50.0% | |
| ! | ATTTTCTCGGCGGGAGAGAA+GGG | + | chr4.4:37015733-37015752 | None:intergenic | 50.0% |
| ! | GAACGCCGGTGAGATTTTCT+CGG | + | chr4.4:37015746-37015765 | None:intergenic | 50.0% |
| ! | GAATGGTGAGTTTAGTGGGC+CGG | - | chr4.4:37016327-37016346 | MS.gene23361:intron | 50.0% |
| ! | GGGAATAAGAGAAGTGCAGG+AGG | - | chr4.4:37016136-37016155 | MS.gene23361:intron | 50.0% |
| ! | GGTGCATATCGGTTGTTCTC+AGG | - | chr4.4:37017494-37017513 | MS.gene23361:CDS | 50.0% |
| ! | GTTGATTCCGCTTCGAGGAA+GGG | - | chr4.4:37015817-37015836 | MS.gene23361:intron | 50.0% |
| !!! | GGTCGCGTCGCAGTTTTTTT+GGG | - | chr4.4:37017373-37017392 | MS.gene23361:intron | 50.0% |
| AACGTCAGCATGATCCGACG+TGG | + | chr4.4:37015651-37015670 | None:intergenic | 55.0% | |
| AAGCAGCTTTCACGTCAGCG+TGG | + | chr4.4:37016776-37016795 | None:intergenic | 55.0% | |
| ATCAACCCTCCAGGTGAAGG+CGG | + | chr4.4:37016253-37016272 | None:intergenic | 55.0% | |
| ATCTGGTGTGGGTGAGATGG+TGG | + | chr4.4:37015452-37015471 | None:intergenic | 55.0% | |
| CAAACTGCTGCTGTCTGTGC+GGG | - | chr4.4:37017405-37017424 | MS.gene23361:intron | 55.0% | |
| CTAGCAGCAAACGGAGGCAA+CGG | + | chr4.4:37015707-37015726 | None:intergenic | 55.0% | |
| GACATCAACCCTCCAGGTGA+AGG | + | chr4.4:37016256-37016275 | None:intergenic | 55.0% | |
| GAGAGTGATCGTGTGTGGGA+AGG | + | chr4.4:37015560-37015579 | None:intergenic | 55.0% | |
| GATGTCGCCTGGTAATTCGG+GGG | - | chr4.4:37016270-37016289 | MS.gene23361:intron | 55.0% | |
| GCAAACTGCTGCTGTCTGTG+CGG | - | chr4.4:37017404-37017423 | MS.gene23361:intron | 55.0% | |
| GCAACTTCCCTTCCTCGAAG+CGG | + | chr4.4:37015827-37015846 | None:intergenic | 55.0% | |
| GCGGATGCTGATGCTGTTGT+TGG | + | chr4.4:37018712-37018731 | None:intergenic | 55.0% | |
| GGTCAAGGCGGTAGGTTCAT+AGG | - | chr4.4:37017458-37017477 | MS.gene23361:intron | 55.0% | |
| GTGGGGATACTATGCAGAGG+AGG | - | chr4.4:37016110-37016129 | MS.gene23361:intron | 55.0% | |
| TCCCGCCGAGAAAATCTCAC+CGG | - | chr4.4:37015738-37015757 | MS.gene23361:intron | 55.0% | |
| TCCGCCTGTTACGTCTTGTG+CGG | - | chr4.4:37017596-37017615 | MS.gene23361:intron | 55.0% | |
| TCGCGAATCTTCCTCCACGT+CGG | - | chr4.4:37015634-37015653 | MS.gene23361:intron | 55.0% | |
| TGCTATGGCTGATCCGAAGC+GGG | - | chr4.4:37016390-37016409 | MS.gene23361:intron | 55.0% | |
| TGGCTTCAGTCTGCAGAGTC+TGG | + | chr4.4:37016596-37016615 | None:intergenic | 55.0% | |
| TTCCCATCCCCCGAATTACC+AGG | + | chr4.4:37016280-37016299 | None:intergenic | 55.0% | |
| TTCGGGGGATGGGAATTCAG+CGG | - | chr4.4:37016285-37016304 | MS.gene23361:intron | 55.0% | |
| TTGAAGATGCCGCCTTCACC+TGG | - | chr4.4:37016241-37016260 | MS.gene23361:intron | 55.0% | |
| ! | GATCGTGTGTGGGAAGGTGT+AGG | + | chr4.4:37015554-37015573 | None:intergenic | 55.0% |
| ! | GATTTTCTCGGCGGGAGAGA+AGG | + | chr4.4:37015734-37015753 | None:intergenic | 55.0% |
| !! | CGTTGATTCCGCTTCGAGGA+AGG | - | chr4.4:37015816-37015835 | MS.gene23361:intron | 55.0% |
| !! | GGGTTTCTAGCAGCAAACGG+AGG | + | chr4.4:37015713-37015732 | None:intergenic | 55.0% |
| !!! | GGGTCGCGTCGCAGTTTTTT+TGG | - | chr4.4:37017372-37017391 | MS.gene23361:intron | 55.0% |
| AACGTGCAAGGGCTGAGAGG+CGG | + | chr4.4:37015614-37015633 | None:intergenic | 60.0% | |
| AAGATGCCGCCTTCACCTGG+AGG | - | chr4.4:37016244-37016263 | MS.gene23361:intron | 60.0% | |
| AGATGCCGCCTTCACCTGGA+GGG | - | chr4.4:37016245-37016264 | MS.gene23361:intron | 60.0% | |
| CAGCACCTCTTAGCCCGCTT+CGG | + | chr4.4:37016406-37016425 | None:intergenic | 60.0% | |
| CCACCCGCACAAGACGTAAC+AGG | + | chr4.4:37017603-37017622 | None:intergenic | 60.0% | |
| CCCGCACAAGACGTAACAGG+CGG | + | chr4.4:37017600-37017619 | None:intergenic | 60.0% | |
| CCGCCTGTTACGTCTTGTGC+GGG | - | chr4.4:37017597-37017616 | MS.gene23361:intron | 60.0% | |
| CCTCGAAGCGGAATCAACGG+CGG | + | chr4.4:37015815-37015834 | None:intergenic | 60.0% | |
| CCTGTTACGTCTTGTGCGGG+TGG | - | chr4.4:37017600-37017619 | MS.gene23361:intron | 60.0% | |
| CGAAACGTGCAAGGGCTGAG+AGG | + | chr4.4:37015617-37015636 | None:intergenic | 60.0% | |
| CGCCTGGTAATTCGGGGGAT+GGG | - | chr4.4:37016275-37016294 | MS.gene23361:intron | 60.0% | |
| GCATTTGCGGCCGTGAAACC+GGG | + | chr4.4:37015514-37015533 | None:intergenic | 60.0% | |
| GGCATTTGCGGCCGTGAAAC+CGG | + | chr4.4:37015515-37015534 | None:intergenic | 60.0% | |
| GGGATCTGGTGTGGGTGAGA+TGG | + | chr4.4:37015455-37015474 | None:intergenic | 60.0% | |
| GGGTGTTTGGTCAAGGCGGT+AGG | - | chr4.4:37017450-37017469 | MS.gene23361:intron | 60.0% | |
| GTCAGCATGATCCGACGTGG+AGG | + | chr4.4:37015648-37015667 | None:intergenic | 60.0% | |
| GTCGCCGGAAGGTGAAGTTG+TGG | - | chr4.4:37015919-37015938 | MS.gene23361:intron | 60.0% | |
| TCGCCTGGTAATTCGGGGGA+TGG | - | chr4.4:37016274-37016293 | MS.gene23361:intron | 60.0% | |
| ! | CGCCGGTGAGATTTTCTCGG+CGG | + | chr4.4:37015743-37015762 | None:intergenic | 60.0% |
| ! | GAATGAGGCGCTTACTGCCG+AGG | - | chr4.4:37018592-37018611 | MS.gene23361:CDS | 60.0% |
| ! | GCCGGTGAGATTTTCTCGGC+GGG | + | chr4.4:37015742-37015761 | None:intergenic | 60.0% |
| !! | CTGATCCGAAGCGGGCTAAG+AGG | - | chr4.4:37016398-37016417 | MS.gene23361:intron | 60.0% |
| CCAGGCGACATCAACCCTCC+AGG | + | chr4.4:37016262-37016281 | None:intergenic | 65.0% | |
| !! | CCGCCGTTGATTCCGCTTCG+AGG | - | chr4.4:37015812-37015831 | MS.gene23361:intron | 65.0% |
| !! | CCTGGAGGGTTGATGTCGCC+TGG | - | chr4.4:37016259-37016278 | MS.gene23361:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 37015302 | 37018811 | 37015302 | ID=MS.gene23361 |
| chr4.4 | mRNA | 37015302 | 37018811 | 37015302 | ID=MS.gene23361.t1;Parent=MS.gene23361 |
| chr4.4 | exon | 37017694 | 37018811 | 37017694 | ID=MS.gene23361.t1.exon1;Parent=MS.gene23361.t1 |
| chr4.4 | CDS | 37017694 | 37018811 | 37017694 | ID=cds.MS.gene23361.t1;Parent=MS.gene23361.t1 |
| chr4.4 | exon | 37017466 | 37017598 | 37017466 | ID=MS.gene23361.t1.exon2;Parent=MS.gene23361.t1 |
| chr4.4 | CDS | 37017466 | 37017598 | 37017466 | ID=cds.MS.gene23361.t1;Parent=MS.gene23361.t1 |
| chr4.4 | exon | 37017109 | 37017193 | 37017109 | ID=MS.gene23361.t1.exon3;Parent=MS.gene23361.t1 |
| chr4.4 | CDS | 37017109 | 37017193 | 37017109 | ID=cds.MS.gene23361.t1;Parent=MS.gene23361.t1 |
| chr4.4 | exon | 37015302 | 37015525 | 37015302 | ID=MS.gene23361.t1.exon4;Parent=MS.gene23361.t1 |
| chr4.4 | CDS | 37015302 | 37015525 | 37015302 | ID=cds.MS.gene23361.t1;Parent=MS.gene23361.t1 |
| Gene Sequence |
| Protein sequence |
