AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23379.t1 MTR_7g052480 95.738 305 13 0 1 305 252 556 0.0 618
MS.gene23379.t1 MTR_7g084090 59.935 307 119 3 3 305 451 757 6.13e-123 369
MS.gene23379.t1 MTR_6g061270 59.609 307 120 3 3 305 388 694 8.96e-121 362
MS.gene23379.t1 MTR_6g061200 55.375 307 104 4 3 305 388 665 2.10e-106 324
MS.gene23379.t1 MTR_5g013420 45.578 294 146 8 15 305 807 1089 1.62e-69 233
MS.gene23379.t1 MTR_5g013420 45.238 294 147 8 15 305 807 1089 2.55e-68 230
MS.gene23379.t1 MTR_4g010830 43.197 294 153 8 15 305 698 980 7.25e-66 223
MS.gene23379.t1 MTR_7g084090 54.688 192 83 3 3 190 451 642 6.10e-62 207
MS.gene23379.t1 MTR_4g010550 39.932 293 146 7 16 305 199 464 1.21e-58 195
MS.gene23379.t1 MTR_7g088370 32.534 292 170 5 15 301 432 701 7.25e-47 167
MS.gene23379.t1 MTR_7g445710 34.323 303 153 10 15 305 275 543 1.85e-45 161
MS.gene23379.t1 MTR_8g042750 33.788 293 181 8 15 301 399 684 4.23e-42 154
MS.gene23379.t1 MTR_3g011440 33.446 296 181 7 15 301 372 660 5.17e-42 154
MS.gene23379.t1 MTR_8g070070 36.015 261 152 8 19 275 507 756 1.07e-41 153
MS.gene23379.t1 MTR_7g450730 33.103 290 142 7 18 305 266 505 1.66e-41 150
MS.gene23379.t1 MTR_8g070075 33.846 260 159 7 19 275 500 749 2.40e-41 152
MS.gene23379.t1 MTR_1g035420 34.686 271 164 7 15 282 392 652 1.11e-40 150
MS.gene23379.t1 MTR_8g071030 34.470 264 152 6 19 275 487 736 3.71e-40 149
MS.gene23379.t1 MTR_1g035400 34.074 270 165 7 15 281 311 570 4.23e-39 145
MS.gene23379.t1 MTR_1g048950 34.084 311 153 11 4 305 266 533 1.99e-35 134
MS.gene23379.t1 MTR_0376s0030 32.384 281 169 9 4 275 293 561 4.72e-35 133
MS.gene23379.t1 MTR_8g078490 31.098 328 157 11 16 305 957 1253 1.05e-34 134
MS.gene23379.t1 MTR_7g445530 32.353 272 138 10 15 274 275 512 1.14e-32 126
MS.gene23379.t1 MTR_6g044690 30.370 270 167 9 15 275 306 563 1.17e-31 124
MS.gene23379.t1 MTR_1g069570 30.792 341 150 14 19 301 430 742 6.32e-31 122
MS.gene23379.t1 MTR_4g132610 35.294 221 118 5 86 305 851 1047 1.18e-29 119
MS.gene23379.t1 MTR_5g018850 29.819 332 161 11 15 305 1207 1507 2.64e-29 118
MS.gene23379.t1 MTR_6g043960 30.000 270 168 9 15 275 224 481 2.71e-29 116
MS.gene23379.t1 MTR_1g080340 30.058 346 153 12 18 303 268 584 9.44e-29 116
MS.gene23379.t1 MTR_8g078505 35.897 195 97 3 87 276 346 517 3.69e-28 114
MS.gene23379.t1 MTR_7g098390 27.545 334 168 10 19 301 388 698 6.22e-25 105
MS.gene23379.t1 MTR_2g054460 29.851 201 132 4 77 275 270 463 3.73e-24 102
MS.gene23379.t1 MTR_7g445600 32.692 156 62 1 119 274 243 355 1.02e-22 97.1
MS.gene23379.t1 MTR_1g069570 29.779 272 109 12 19 233 430 676 1.59e-19 89.4
MS.gene23379.t1 MTR_1g012890 28.249 177 93 5 128 304 225 367 8.79e-13 68.6
MS.gene23379.t1 MTR_1g064770 47.368 57 29 1 102 157 31 87 6.38e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23379.t1 AT5G13960 57.282 309 127 4 1 305 183 490 4.66e-123 361
MS.gene23379.t1 AT5G13960 57.282 309 127 4 1 305 317 624 4.14e-122 363
MS.gene23379.t1 AT2G22740 40.323 310 165 8 4 305 493 790 5.68e-58 199
MS.gene23379.t1 AT2G22740 40.323 310 165 8 4 305 493 790 5.68e-58 199
MS.gene23379.t1 AT2G35160 38.408 289 139 8 19 305 507 758 8.85e-57 195
MS.gene23379.t1 AT2G35160 38.408 289 139 8 19 305 543 794 1.78e-56 195
MS.gene23379.t1 AT2G35160 38.408 289 139 8 19 305 543 794 1.78e-56 195
MS.gene23379.t1 AT2G35160 38.408 289 139 8 19 305 543 794 1.78e-56 195
MS.gene23379.t1 AT2G35160 38.408 289 139 8 19 305 543 794 1.78e-56 195
MS.gene23379.t1 AT1G73100 32.660 297 189 6 9 301 376 665 3.01e-46 166
MS.gene23379.t1 AT2G33290 35.069 288 155 7 4 275 367 638 1.12e-43 158
MS.gene23379.t1 AT2G33290 35.069 288 155 7 4 275 367 638 1.12e-43 158
MS.gene23379.t1 AT2G33290 35.069 288 155 7 4 275 367 638 1.12e-43 158
MS.gene23379.t1 AT2G33290 35.069 288 155 7 4 275 367 638 1.12e-43 158
MS.gene23379.t1 AT5G04940 32.997 297 183 8 11 301 380 666 7.18e-42 153
MS.gene23379.t1 AT5G04940 32.997 297 183 8 11 301 380 666 7.18e-42 153
MS.gene23379.t1 AT4G13460 33.449 287 170 9 4 279 365 641 1.58e-41 152
MS.gene23379.t1 AT4G13460 33.449 287 170 9 4 279 365 641 1.58e-41 152
MS.gene23379.t1 AT1G17770 31.250 304 188 9 9 301 396 689 3.07e-36 137
MS.gene23379.t1 AT2G23740 32.628 331 166 13 4 304 1078 1381 2.09e-33 130
MS.gene23379.t1 AT2G23740 32.628 331 166 13 4 304 1078 1381 2.09e-33 130
MS.gene23379.t1 AT2G23740 32.628 331 166 13 4 304 1078 1381 2.09e-33 130
MS.gene23379.t1 AT2G23740 32.628 331 166 13 4 304 1071 1374 2.39e-33 130
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 103 417 1.82e-26 108
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 119 433 1.90e-26 108
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 119 433 2.06e-26 108
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 130 444 2.56e-26 108
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 146 460 2.67e-26 108
MS.gene23379.t1 AT3G04380 28.107 338 167 10 19 303 146 460 2.86e-26 108
MS.gene23379.t1 AT1G04050 32.524 206 109 6 102 303 438 617 2.12e-25 106
MS.gene23379.t1 AT1G04050 32.524 206 109 6 102 303 542 721 2.25e-25 106
MS.gene23379.t1 AT1G04050 32.524 206 109 6 102 303 542 721 2.25e-25 106
MS.gene23379.t1 AT2G24740 29.352 293 183 10 15 301 477 751 4.86e-25 105
MS.gene23379.t1 AT2G23740 31.923 260 124 11 4 233 1078 1314 4.36e-22 97.1
MS.gene23379.t1 AT2G23740 31.923 260 124 11 4 233 1078 1314 4.36e-22 97.1
MS.gene23379.t1 AT3G03750 31.381 239 126 7 64 300 143 345 5.54e-22 94.7
MS.gene23379.t1 AT4G30860 27.723 202 104 6 103 304 305 464 2.13e-12 67.8

Find 68 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATAGATGCTGGTTCTTT+TGG 0.193774 7.3:-51279308 MS.gene23379:CDS
TCTTACCGCCCAACCTTTCT+TGG 0.287241 7.3:+51279652 None:intergenic
GAAACTTTGTTTCCACATTT+AGG 0.290820 7.3:+51279806 None:intergenic
CAGGAACTCACCTATGACTA+TGG 0.342829 7.3:-51278262 MS.gene23379:CDS
CCAGCATCTATGCAATATTC+AGG 0.354345 7.3:+51279317 None:intergenic
AGAAGACATACCTCCCTATC+AGG 0.387240 7.3:-51279177 MS.gene23379:intron
CACACAATCAATGGTGTAGA+TGG 0.399488 7.3:-51279512 MS.gene23379:CDS
GCACCAGTTGTCGAGTATAT+TGG 0.400887 7.3:-51279605 MS.gene23379:CDS
TGGAAACAAAGTTTCTCAAC+AGG 0.404546 7.3:-51279798 MS.gene23379:CDS
TTGCATCCCGCAGCACTAGA+TGG 0.412772 7.3:+51280126 None:intergenic
CTTACCGCCCAACCTTTCTT+GGG 0.422197 7.3:+51279653 None:intergenic
TGTCCTTGTGCTAGTCATAA+TGG 0.433090 7.3:-51280075 MS.gene23379:CDS
ACACATTGTACAAAGAGGTT+TGG 0.447308 7.3:+51279251 None:intergenic
TTTCATACAATAACATTGGC+AGG 0.452872 7.3:-51280044 MS.gene23379:intron
ATCGTACTCCCAAGAAAGGT+TGG 0.459933 7.3:-51279661 MS.gene23379:CDS
TACAAAGAGGAATACCTGAT+AGG 0.463396 7.3:+51279163 None:intergenic
TGGAGGATCATCAAAATCAT+TGG 0.466153 7.3:+51280394 None:intergenic
GATAAATTGCTTATAGGCAA+TGG 0.479915 7.3:+51279371 None:intergenic
GATTGTTTGCACACAATCAA+TGG 0.481537 7.3:-51279521 MS.gene23379:CDS
ACACCAATATACTCGACAAC+TGG 0.483092 7.3:+51279602 None:intergenic
ACATGGGACTTTATCCCATC+AGG 0.487648 7.3:-51279629 MS.gene23379:CDS
GAGTGTGTAACCATAGTCAT+AGG 0.489551 7.3:+51278252 None:intergenic
ACAAAGAGGAATACCTGATA+GGG 0.490411 7.3:+51279164 None:intergenic
TCGTACTCCCAAGAAAGGTT+GGG 0.500282 7.3:-51279660 MS.gene23379:CDS
AGAGGTTTGGTTCACATCCA+TGG 0.504457 7.3:+51279264 None:intergenic
CTAGATGGAACTTCAATGCT+TGG 0.505910 7.3:+51280141 None:intergenic
CGACAACTGGTGCACCTGAT+GGG 0.509774 7.3:+51279615 None:intergenic
GTTTCAAGATTTATCAACCA+TGG 0.515474 7.3:-51279281 MS.gene23379:CDS
GTTTATCGTACTCCCAAGAA+AGG 0.517387 7.3:-51279665 MS.gene23379:CDS
TCGACAACTGGTGCACCTGA+TGG 0.518260 7.3:+51279614 None:intergenic
GAAGTTCCATCTAGTGCTGC+GGG 0.529357 7.3:-51280132 MS.gene23379:CDS
AAACTCTTTCTTCTTCTCCA+AGG 0.531848 7.3:-51280569 MS.gene23379:intron
CCTGAATATTGCATAGATGC+TGG 0.535805 7.3:-51279317 MS.gene23379:CDS
CTAAGTAGAGACGATGAGCT+AGG 0.538306 7.3:-51279578 MS.gene23379:CDS
TTTAGGTTCATTTAATGGAA+GGG 0.538367 7.3:-51280602 None:intergenic
CTTTAGGTTCATTTAATGGA+AGG 0.538474 7.3:-51280603 None:intergenic
CTAGACATCGTGGTCGAATG+TGG 0.546755 7.3:-51279848 MS.gene23379:CDS
AAGGTTGGGCGGTAAGAACA+TGG 0.558115 7.3:-51279646 MS.gene23379:CDS
ACTAGCACAAGGACATCTCT+TGG 0.560065 7.3:+51280083 None:intergenic
GGGCTTAAGTTACCGACTTG+AGG 0.574958 7.3:-51279777 MS.gene23379:intron
TGAGAACACATTGTACAAAG+AGG 0.579762 7.3:+51279246 None:intergenic
GATAGTGTGTCTGATTCTGA+TGG 0.580918 7.3:-51278229 MS.gene23379:CDS
GAAGATATAATCATTTCCGT+TGG 0.584617 7.3:+51279550 None:intergenic
TGTGGACCGCAATGTGGATG+CGG 0.589925 7.3:-51279830 MS.gene23379:CDS
TGCTGCGGGATGCAATTGCA+AGG 0.591722 7.3:-51280118 MS.gene23379:CDS
GTATGCAAGGACATTAGCAA+TGG 0.598177 7.3:-51280443 MS.gene23379:CDS
AATGTTATTGTATGAAAACT+CGG 0.598679 7.3:+51280050 None:intergenic
ACAATGTCATTGTGGTGCAA+AGG 0.601194 7.3:-51278191 MS.gene23379:CDS
TTACCTGTGGGTGCAACTGG+AGG 0.602916 7.3:+51280377 None:intergenic
GATCCTCCAGTTGCACCCAC+AGG 0.606455 7.3:-51280380 MS.gene23379:intron
AGCACTACACGAGCTAGTCT+AGG 0.619841 7.3:+51279209 None:intergenic
CATTCGACCACGATGTCTAG+AGG 0.624366 7.3:+51279851 None:intergenic
CAATGGTGTAGATGGAAGAG+AGG 0.625940 7.3:-51279504 MS.gene23379:intron
TGTGGATGCGGACCTAAATG+TGG 0.629564 7.3:-51279818 MS.gene23379:CDS
ATTGTAAAATGACCTCAAGT+CGG 0.632516 7.3:+51279765 None:intergenic
TGAAGTTCCATCTAGTGCTG+CGG 0.634941 7.3:-51280133 MS.gene23379:CDS
AAGAGGAATACCTGATAGGG+AGG 0.649275 7.3:+51279167 None:intergenic
GCTGCGGGATGCAATTGCAA+GGG 0.655088 7.3:-51280117 MS.gene23379:CDS
AGGTTGGGCGGTAAGAACAT+GGG 0.665196 7.3:-51279645 MS.gene23379:CDS
AAACAGCTACAATGTCATTG+TGG 0.666008 7.3:-51278199 MS.gene23379:CDS
TACTCCCAAGAAAGGTTGGG+CGG 0.669811 7.3:-51279657 MS.gene23379:CDS
GTCGAATGTGGACCGCAATG+TGG 0.680163 7.3:-51279836 MS.gene23379:CDS
GGAAACAAAGTTTCTCAACA+GGG 0.682009 7.3:-51279797 MS.gene23379:CDS
TTAGGTCCGCATCCACATTG+CGG 0.684443 7.3:+51279824 None:intergenic
GATGAGCTAGGAAGTGCCAA+CGG 0.706121 7.3:-51279566 MS.gene23379:CDS
GAGCCATTATGACTAGCACA+AGG 0.716781 7.3:+51280072 None:intergenic
GAGCTAGTCTAGGATCTCTG+TGG 0.733830 7.3:+51279219 None:intergenic
GATCGAGCCTCTAGACATCG+TGG 0.739663 7.3:-51279858 MS.gene23379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAATTTAATAAACAAT+TGG - chr7.3:51280456-51280475 MS.gene23379:intron 10.0%
!! TAAAATATGTATGAAATTTA+GGG - chr7.3:51279306-51279325 MS.gene23379:CDS 10.0%
!!! TAATTATTTTCATACATTTT+GGG - chr7.3:51280397-51280416 MS.gene23379:CDS 10.0%
!!! TGTTTTTTCATTTTAAAAAA+GGG + chr7.3:51278431-51278450 None:intergenic 10.0%
!!! TTAATTATTTTCATACATTT+TGG - chr7.3:51280396-51280415 MS.gene23379:CDS 10.0%
!!! TTGTTTTTTCATTTTAAAAA+AGG + chr7.3:51278432-51278451 None:intergenic 10.0%
!! AAAAAATAACAGTATTAAGA+CGG - chr7.3:51280201-51280220 MS.gene23379:intron 15.0%
!! GTAAAACAAAAAATATTAGA+TGG - chr7.3:51278398-51278417 MS.gene23379:intron 15.0%
!! GTAAAATATGTATGAAATTT+AGG - chr7.3:51279305-51279324 MS.gene23379:CDS 15.0%
!! TATTGTTAATATAATCGATA+TGG + chr7.3:51279975-51279994 None:intergenic 15.0%
!! TTATATTAACAATAACAAGA+CGG - chr7.3:51279981-51280000 MS.gene23379:intron 15.0%
!!! AGAAATTTTATTTTGAAAGA+AGG - chr7.3:51280258-51280277 MS.gene23379:intron 15.0%
!!! TCATGATGTTTTAAAATTTT+AGG - chr7.3:51278561-51278580 MS.gene23379:intron 15.0%
!! AAATAATACACACCTAAATT+GGG + chr7.3:51280120-51280139 None:intergenic 20.0%
!! AAGCAATTTATCTGAAAAAA+GGG - chr7.3:51279396-51279415 MS.gene23379:intron 20.0%
!! AATGTTATTGTATGAAAACT+CGG + chr7.3:51278709-51278728 None:intergenic 20.0%
!! CGAAAAAAAAAAAGGAAAAA+GGG + chr7.3:51278474-51278493 None:intergenic 20.0%
!! GGTTAAAATGGAAATTTAAA+GGG + chr7.3:51279750-51279769 None:intergenic 20.0%
!! GTTAAAATGGAAATTTAAAG+GGG + chr7.3:51279749-51279768 None:intergenic 20.0%
!! TAAATATATTAACACATAGC+CGG + chr7.3:51280175-51280194 None:intergenic 20.0%
!! TAAGCAATTTATCTGAAAAA+AGG - chr7.3:51279395-51279414 MS.gene23379:intron 20.0%
!! TGGTTAAAATGGAAATTTAA+AGG + chr7.3:51279751-51279770 None:intergenic 20.0%
!! TTAAAATCCTTATTACAAAG+AGG + chr7.3:51279609-51279628 None:intergenic 20.0%
!! TTAAAATGGAAATTTAAAGG+GGG + chr7.3:51279748-51279767 None:intergenic 20.0%
!! TTACATATTACAAACATCAA+TGG + chr7.3:51279042-51279061 None:intergenic 20.0%
!!! AATATTTTTTGTTTTACCTG+TGG + chr7.3:51278395-51278414 None:intergenic 20.0%
!!! ATATTTTTTGTTTTACCTGT+GGG + chr7.3:51278394-51278413 None:intergenic 20.0%
!!! GAATATTGTTTCTTTTAGTT+TGG - chr7.3:51278291-51278310 MS.gene23379:intron 20.0%
!!! TTTTCAGATAAATTGCTTAT+AGG + chr7.3:51279394-51279413 None:intergenic 20.0%
!!! TTTTTTTTTTCCAAACATGA+TGG - chr7.3:51279673-51279692 MS.gene23379:intron 20.0%
! AAGTAAGTTATCGTCAATAA+GGG + chr7.3:51280432-51280451 None:intergenic 25.0%
! AATATAATCGATATGGATGA+CGG + chr7.3:51279968-51279987 None:intergenic 25.0%
! AGTTTGTGTTTATAGTTACT+GGG - chr7.3:51280074-51280093 MS.gene23379:CDS 25.0%
! CAAATAATACACACCTAAAT+TGG + chr7.3:51280121-51280140 None:intergenic 25.0%
! GCGAAAAAAAAAAAGGAAAA+AGG + chr7.3:51278475-51278494 None:intergenic 25.0%
!! GAGTTTTCATACAATAACAT+TGG - chr7.3:51278708-51278727 MS.gene23379:intron 25.0%
!! TAGTTTGTGTTTATAGTTAC+TGG - chr7.3:51280073-51280092 MS.gene23379:CDS 25.0%
!! TTGGTATTTGCTAATTTAAC+AGG - chr7.3:51280475-51280494 MS.gene23379:intron 25.0%
!!! AATTTCCATTTTAACCATGT+AGG - chr7.3:51279754-51279773 MS.gene23379:intron 25.0%
!!! ATTTCCATTTTAACCATGTA+GGG - chr7.3:51279755-51279774 MS.gene23379:intron 25.0%
!!! GTTGGTTTTGTTGTTAAAAT+GGG - chr7.3:51280232-51280251 MS.gene23379:intron 25.0%
!!! TCATTGAAATTTTTCAGAGA+CGG - chr7.3:51279350-51279369 MS.gene23379:CDS 25.0%
AAGGAAAAAGGGACATATAT+TGG + chr7.3:51278463-51278482 None:intergenic 30.0%
AATAACAGTATTAAGACGGT+AGG - chr7.3:51280205-51280224 MS.gene23379:intron 30.0%
AGGACTCTTGAGATATAAAA+TGG - chr7.3:51280278-51280297 MS.gene23379:intron 30.0%
AGGTATTCCTCTTTGTAATA+AGG - chr7.3:51279599-51279618 MS.gene23379:CDS 30.0%
ATTGACGATAACTTACTTCA+TGG - chr7.3:51280434-51280453 MS.gene23379:CDS 30.0%
ATTGTAAAATGACCTCAAGT+CGG + chr7.3:51278994-51279013 None:intergenic 30.0%
GAAGATATAATCATTTCCGT+TGG + chr7.3:51279209-51279228 None:intergenic 30.0%
GAAGTAAGTTATCGTCAATA+AGG + chr7.3:51280433-51280452 None:intergenic 30.0%
GATAAATTGCTTATAGGCAA+TGG + chr7.3:51279388-51279407 None:intergenic 30.0%
GGACTCTTGAGATATAAAAT+GGG - chr7.3:51280279-51280298 MS.gene23379:intron 30.0%
GTTTCAAGATTTATCAACCA+TGG - chr7.3:51279475-51279494 MS.gene23379:intron 30.0%
TGGATCTAACAACTTTATGT+TGG + chr7.3:51279831-51279850 None:intergenic 30.0%
TTTACCCTACATGGTTAAAA+TGG + chr7.3:51279762-51279781 None:intergenic 30.0%
TTTCATACAATAACATTGGC+AGG - chr7.3:51278712-51278731 MS.gene23379:intron 30.0%
! GAAACTTTGTTTCCACATTT+AGG + chr7.3:51278953-51278972 None:intergenic 30.0%
! TTCTAACACTTGCTTTGTTA+CGG + chr7.3:51279866-51279885 None:intergenic 30.0%
!! GATTTGTTGATAACATACCT+TGG + chr7.3:51278207-51278226 None:intergenic 30.0%
!!! GGTTGGTTTTGTTGTTAAAA+TGG - chr7.3:51280231-51280250 MS.gene23379:intron 30.0%
!!! TTCTTTTAGTTTGGTATGCA+AGG - chr7.3:51278300-51278319 MS.gene23379:intron 30.0%
AAACAGCTACAATGTCATTG+TGG - chr7.3:51280557-51280576 MS.gene23379:intron 35.0%
AAACTACCTTTCTCTTACAC+AGG - chr7.3:51279069-51279088 MS.gene23379:intron 35.0%
AAACTCTTTCTTCTTCTCCA+AGG - chr7.3:51278187-51278206 MS.gene23379:CDS 35.0%
AAATGGAAATTTAAAGGGGG+AGG + chr7.3:51279745-51279764 None:intergenic 35.0%
ACAAAGAGGAATACCTGATA+GGG + chr7.3:51279595-51279614 None:intergenic 35.0%
ACAATAACAAGACGGTGTTT+CGG - chr7.3:51279989-51280008 MS.gene23379:intron 35.0%
ACACATTGTACAAAGAGGTT+TGG + chr7.3:51279508-51279527 None:intergenic 35.0%
ATGTTGGACGCATTTCAAAA+AGG + chr7.3:51279815-51279834 None:intergenic 35.0%
CAATAACACACCATCATGTT+TGG + chr7.3:51279686-51279705 None:intergenic 35.0%
GATAAACCTGTGTAAGAGAA+AGG + chr7.3:51279078-51279097 None:intergenic 35.0%
GATTGTTTGCACACAATCAA+TGG - chr7.3:51279235-51279254 MS.gene23379:CDS 35.0%
GCATGCAGCGAAAAAAAAAA+AGG + chr7.3:51278482-51278501 None:intergenic 35.0%
GGAAACAAAGTTTCTCAACA+GGG - chr7.3:51278959-51278978 MS.gene23379:intron 35.0%
TAAGTTATCGTCAATAAGGG+AGG + chr7.3:51280429-51280448 None:intergenic 35.0%
TACAAAGAGGAATACCTGAT+AGG + chr7.3:51279596-51279615 None:intergenic 35.0%
TGAAAAAAGGGACGAGTTAA+TGG - chr7.3:51279408-51279427 MS.gene23379:intron 35.0%
TGAAATAGACCTTGTATCGA+CGG - chr7.3:51279936-51279955 MS.gene23379:intron 35.0%
TGAGAACACATTGTACAAAG+AGG + chr7.3:51279513-51279532 None:intergenic 35.0%
TGGAAACAAAGTTTCTCAAC+AGG - chr7.3:51278958-51278977 MS.gene23379:intron 35.0%
TGGAGGATCATCAAAATCAT+TGG + chr7.3:51278365-51278384 None:intergenic 35.0%
! CAAACATGATGGTGTGTTAT+TGG - chr7.3:51279684-51279703 MS.gene23379:intron 35.0%
! TCTAACACTTGCTTTGTTAC+GGG + chr7.3:51279865-51279884 None:intergenic 35.0%
!! GAAATTTTTCAGAGACGGTT+GGG - chr7.3:51279355-51279374 MS.gene23379:CDS 35.0%
!! GGCAGGTATTGTTTTACTTT+TGG - chr7.3:51278729-51278748 MS.gene23379:intron 35.0%
!! TGAAATTTTTCAGAGACGGT+TGG - chr7.3:51279354-51279373 MS.gene23379:CDS 35.0%
!! TTTTCGCTGCATGCTTTATT+TGG - chr7.3:51278488-51278507 MS.gene23379:intron 35.0%
!!! GATGGTGTGTTATTGGTTTT+AGG - chr7.3:51279691-51279710 MS.gene23379:intron 35.0%
AACCAGTTCAGAAGATGACA+TGG + chr7.3:51280359-51280378 None:intergenic 40.0%
ACAATGTCATTGTGGTGCAA+AGG - chr7.3:51280565-51280584 MS.gene23379:intron 40.0%
ACACCAATATACTCGACAAC+TGG + chr7.3:51279157-51279176 None:intergenic 40.0%
ATTAAGACGGTAGGTATGGT+TGG - chr7.3:51280214-51280233 MS.gene23379:intron 40.0%
CACACAATCAATGGTGTAGA+TGG - chr7.3:51279244-51279263 MS.gene23379:CDS 40.0%
CAGTATTAAGACGGTAGGTA+TGG - chr7.3:51280210-51280229 MS.gene23379:intron 40.0%
CCAGCATCTATGCAATATTC+AGG + chr7.3:51279442-51279461 None:intergenic 40.0%
CCTGAATATTGCATAGATGC+TGG - chr7.3:51279439-51279458 MS.gene23379:intron 40.0%
CTAGATGGAACTTCAATGCT+TGG + chr7.3:51278618-51278637 None:intergenic 40.0%
CTGGGTGTTCTGTCTTTATA+CGG - chr7.3:51280092-51280111 MS.gene23379:CDS 40.0%
CTTTATACGGTGCCCAATTT+AGG - chr7.3:51280105-51280124 MS.gene23379:CDS 40.0%
GAGTGTGTAACCATAGTCAT+AGG + chr7.3:51280507-51280526 None:intergenic 40.0%
GATAGTGTGTCTGATTCTGA+TGG - chr7.3:51280527-51280546 MS.gene23379:intron 40.0%
GTATGCAAGGACATTAGCAA+TGG - chr7.3:51278313-51278332 MS.gene23379:intron 40.0%
GTTTATCGTACTCCCAAGAA+AGG - chr7.3:51279091-51279110 MS.gene23379:intron 40.0%
TGTCCTTGTGCTAGTCATAA+TGG - chr7.3:51278681-51278700 MS.gene23379:intron 40.0%
TTCCATGTCATCTTCTGAAC+TGG - chr7.3:51280354-51280373 MS.gene23379:intron 40.0%
! CTAACACTTGCTTTGTTACG+GGG + chr7.3:51279864-51279883 None:intergenic 40.0%
! TAACACTTGCTTTGTTACGG+GGG + chr7.3:51279863-51279882 None:intergenic 40.0%
!! TCCTTAAGGGTGGTTGTTTT+TGG - chr7.3:51280013-51280032 MS.gene23379:intron 40.0%
!!! CCTTAAGGGTGGTTGTTTTT+GGG - chr7.3:51280014-51280033 MS.gene23379:intron 40.0%
!!! CTCACTGTTTTTACCCTACA+TGG + chr7.3:51279771-51279790 None:intergenic 40.0%
!!! TGCATAGATGCTGGTTCTTT+TGG - chr7.3:51279448-51279467 MS.gene23379:intron 40.0%
!!! TTGTTACCATCGCTAGCTTT+TGG - chr7.3:51280138-51280157 MS.gene23379:CDS 40.0%
AAGAGGAATACCTGATAGGG+AGG + chr7.3:51279592-51279611 None:intergenic 45.0%
ACATGGGACTTTATCCCATC+AGG - chr7.3:51279127-51279146 MS.gene23379:intron 45.0%
ACGGTGTTTCGGTTCCTTAA+GGG - chr7.3:51280000-51280019 MS.gene23379:intron 45.0%
ACTAGCACAAGGACATCTCT+TGG + chr7.3:51278676-51278695 None:intergenic 45.0%
AGAAGACATACCTCCCTATC+AGG - chr7.3:51279579-51279598 MS.gene23379:CDS 45.0%
ATCGTACTCCCAAGAAAGGT+TGG - chr7.3:51279095-51279114 MS.gene23379:intron 45.0%
CAATGGTGTAGATGGAAGAG+AGG - chr7.3:51279252-51279271 MS.gene23379:CDS 45.0%
CAGGAACTCACCTATGACTA+TGG - chr7.3:51280494-51280513 MS.gene23379:intron 45.0%
CCCAAAAACAACCACCCTTA+AGG + chr7.3:51280017-51280036 None:intergenic 45.0%
CTAAGTAGAGACGATGAGCT+AGG - chr7.3:51279178-51279197 MS.gene23379:CDS 45.0%
GAGCCATTATGACTAGCACA+AGG + chr7.3:51278687-51278706 None:intergenic 45.0%
GCACCAGTTGTCGAGTATAT+TGG - chr7.3:51279151-51279170 MS.gene23379:intron 45.0%
TCGTACTCCCAAGAAAGGTT+GGG - chr7.3:51279096-51279115 MS.gene23379:intron 45.0%
TGAAGTTCCATCTAGTGCTG+CGG - chr7.3:51278623-51278642 MS.gene23379:intron 45.0%
TGTTACGGGGGAAATACATC+TGG + chr7.3:51279851-51279870 None:intergenic 45.0%
! AGAGGTTTGGTTCACATCCA+TGG + chr7.3:51279495-51279514 None:intergenic 45.0%
!!! AAGGGTGGTTGTTTTTGGGT+TGG - chr7.3:51280018-51280037 MS.gene23379:intron 45.0%
!!! GGTTGTTTTTGGGTTGGCTT+CGG - chr7.3:51280024-51280043 MS.gene23379:intron 45.0%
AAGGTTGGGCGGTAAGAACA+TGG - chr7.3:51279110-51279129 MS.gene23379:intron 50.0%
AGGTTGGGCGGTAAGAACAT+GGG - chr7.3:51279111-51279130 MS.gene23379:intron 50.0%
CATTCGACCACGATGTCTAG+AGG + chr7.3:51278908-51278927 None:intergenic 50.0%
CTAGACATCGTGGTCGAATG+TGG - chr7.3:51278908-51278927 MS.gene23379:intron 50.0%
CTTACCGCCCAACCTTTCTT+GGG + chr7.3:51279106-51279125 None:intergenic 50.0%
GAAGTTCCATCTAGTGCTGC+GGG - chr7.3:51278624-51278643 MS.gene23379:intron 50.0%
GACGGTGTTTCGGTTCCTTA+AGG - chr7.3:51279999-51280018 MS.gene23379:intron 50.0%
GTGTTTCGGTTCCTTAAGGG+TGG - chr7.3:51280003-51280022 MS.gene23379:intron 50.0%
TACTCCCAAGAAAGGTTGGG+CGG - chr7.3:51279099-51279118 MS.gene23379:intron 50.0%
TCTTACCGCCCAACCTTTCT+TGG + chr7.3:51279107-51279126 None:intergenic 50.0%
TGTGGATGCGGACCTAAATG+TGG - chr7.3:51278938-51278957 MS.gene23379:intron 50.0%
TTAGGTCCGCATCCACATTG+CGG + chr7.3:51278935-51278954 None:intergenic 50.0%
! AGCACTACACGAGCTAGTCT+AGG + chr7.3:51279550-51279569 None:intergenic 50.0%
! CGGTAAGTACCGTCGATACA+AGG + chr7.3:51279948-51279967 None:intergenic 50.0%
! GAGCTAGTCTAGGATCTCTG+TGG + chr7.3:51279540-51279559 None:intergenic 50.0%
! GTTTTACCTGTGGGTGCAAC+TGG + chr7.3:51278385-51278404 None:intergenic 50.0%
!! GATGAGCTAGGAAGTGCCAA+CGG - chr7.3:51279190-51279209 MS.gene23379:CDS 50.0%
!! GGGCTTAAGTTACCGACTTG+AGG - chr7.3:51278979-51278998 MS.gene23379:intron 50.0%
CGACAACTGGTGCACCTGAT+GGG + chr7.3:51279144-51279163 None:intergenic 55.0%
GACGAGCCAAAAGCTAGCGA+TGG + chr7.3:51280147-51280166 None:intergenic 55.0%
GATCGAGCCTCTAGACATCG+TGG - chr7.3:51278898-51278917 MS.gene23379:intron 55.0%
GCTGCGGGATGCAATTGCAA+GGG - chr7.3:51278639-51278658 MS.gene23379:intron 55.0%
GTCGAATGTGGACCGCAATG+TGG - chr7.3:51278920-51278939 MS.gene23379:intron 55.0%
TCGACAACTGGTGCACCTGA+TGG + chr7.3:51279145-51279164 None:intergenic 55.0%
TGCTGCGGGATGCAATTGCA+AGG - chr7.3:51278638-51278657 MS.gene23379:intron 55.0%
TGTGGACCGCAATGTGGATG+CGG - chr7.3:51278926-51278945 MS.gene23379:intron 55.0%
TTACCTGTGGGTGCAACTGG+AGG + chr7.3:51278382-51278401 None:intergenic 55.0%
TTGCATCCCGCAGCACTAGA+TGG + chr7.3:51278633-51278652 None:intergenic 55.0%
!!! GCTTTTGGCTCGTCTTGTGC+CGG - chr7.3:51280153-51280172 MS.gene23379:CDS 55.0%
GATCCTCCAGTTGCACCCAC+AGG - chr7.3:51278376-51278395 MS.gene23379:intron 60.0%
!! GGGTTGGCTTCGGTGCTTAG+TGG - chr7.3:51280034-51280053 MS.gene23379:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 51278168 51280610 51278168 ID=MS.gene23379
chr7.3 mRNA 51278168 51280610 51278168 ID=MS.gene23379.t1;Parent=MS.gene23379
chr7.3 exon 51280570 51280610 51280570 ID=MS.gene23379.t1.exon1;Parent=MS.gene23379.t1
chr7.3 CDS 51280570 51280610 51280570 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51280381 51280469 51280381 ID=MS.gene23379.t1.exon2;Parent=MS.gene23379.t1
chr7.3 CDS 51280381 51280469 51280381 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51280045 51280195 51280045 ID=MS.gene23379.t1.exon3;Parent=MS.gene23379.t1
chr7.3 CDS 51280045 51280195 51280045 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51279778 51279883 51279778 ID=MS.gene23379.t1.exon4;Parent=MS.gene23379.t1
chr7.3 CDS 51279778 51279883 51279778 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51279505 51279687 51279505 ID=MS.gene23379.t1.exon5;Parent=MS.gene23379.t1
chr7.3 CDS 51279505 51279687 51279505 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51279178 51279411 51279178 ID=MS.gene23379.t1.exon6;Parent=MS.gene23379.t1
chr7.3 CDS 51279178 51279411 51279178 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
chr7.3 exon 51278168 51278281 51278168 ID=MS.gene23379.t1.exon7;Parent=MS.gene23379.t1
chr7.3 CDS 51278168 51278281 51278168 ID=cds.MS.gene23379.t1;Parent=MS.gene23379.t1
Gene Sequence

>MS.gene23379

ATGGAAGGGCAAGTCTCTAAAACTCTTTCTTCTTCTCCAAGGTATGTTATCAACAAATCTCTTCAGAAATACAGTGTTATTGAGTTCTTTTGATATACATAAATATCTGTAATTGAGTTACAAGAATATTGTTTCTTTTAGTTTGGTATGCAAGGACATTAGCAATGGACAAGAAGCTATCAGCATTATTGCAACCAATGATTTTGATGATCCTCCAGTTGCACCCACAGGTAAAACAAAAAATATTAGATGGAAATGAACCCTTTTTTAAAATGAAAAAACAAATGCAAATCCAATATATGTCCCTTTTTCCTTTTTTTTTTTCGCTGCATGCTTTATTTGGTGAAGTGCATATGTTTTCAAGTCACTCTCTTTTGATAAAGAAAATTGCACTCATGATGTTTTAAAATTTTAGGTTTTGAATACATTACATCAAACAAATTTTCACCAAGCATTGAAGTTCCATCTAGTGCTGCGGGATGCAATTGCAAGGGAAGTTGTAGAACCAAGAGATGTCCTTGTGCTAGTCATAATGGCTCCGAGTTTTCATACAATAACATTGGCAGGTATTGTTTTACTTTTGGATTTGTTGACACAGAAAGATCTTTGACACAGAAAGATCTTACGTTGTAAATAAATATAATTTCACTTGTTTTAAATAGTTTGATGTTCAACACTCTTAAAATTAAGTTCTTAAACTATCAAACTTAATCAATTATTTTGTTAGATTGATCGAGCCTCTAGACATCGTGGTCGAATGTGGACCGCAATGTGGATGCGGACCTAAATGTGGAAACAAAGTTTCTCAACAGGGCTTAAGTTACCGACTTGAGGTCATTTTACAATTTACTCAAGTTTCTACACTTGTTTACCATTGATGTTTGTAATATGTAAACTAACTAAACTACCTTTCTCTTACACAGGTTTATCGTACTCCCAAGAAAGGTTGGGCGGTAAGAACATGGGACTTTATCCCATCAGGTGCACCAGTTGTCGAGTATATTGGTGTACTAAGTAGAGACGATGAGCTAGGAAGTGCCAACGGAAATGATTATATCTTCGATATTGATTGTTTGCACACAATCAATGGTGTAGATGGAAGAGAGGTAAGAATGCAAAATTTTTTGCAAAATTATTGTAAAATATGTATGAAATTTAGGGTGCTATTAATATAGATTTCTTTCATTGAAATTTTTCAGAGACGGTTGGGTAATGTACCATTGCCTATAAGCAATTTATCTGAAAAAAGGGACGAGTTAATGGAAAAAGATCCTGAATATTGCATAGATGCTGGTTCTTTTGGAAATGTTTCAAGATTTATCAACCATGGATGTGAACCAAACCTCTTTGTACAATGTGTTCTCAGCAGCCACAGAGATCCTAGACTAGCTCGTGTAGTGCTATTTGCAGCAGAAGACATACCTCCCTATCAGGTATTCCTCTTTGTAATAAGGATTTTAAGAATTCATTGTGTTATCATCTTTTTTATTTGATAGCTCACAATGTTTTTTTTTTCCAAACATGATGGTGTGTTATTGGTTTTAGGAATTTTGTGATTGATTTTAGATGATAATCCTCCCCCTTTAAATTTCCATTTTAACCATGTAGGGTAAAAACAGTGAGAAAAAAATATAAGTCACATCACCTTTTTGAAATGCGTCCAACATAAAGTTGTTAGATCCAGATGTATTTCCCCCGTAACAAAGCAAGTGTTAGAAAGAATGTGTTAATATGAGTATTGCTAATATTATTCTTAATTGAATTGAAATGAAATAGACCTTGTATCGACGGTACTTACCGTCATCCATATCGATTATATTAACAATAACAAGACGGTGTTTCGGTTCCTTAAGGGTGGTTGTTTTTGGGTTGGCTTCGGTGCTTAGTGGTTTTTTGTGTTTGTTGTAGTTTGTGTTTATAGTTACTGGGTGTTCTGTCTTTATACGGTGCCCAATTTAGGTGTGTATTATTTGTTACCATCGCTAGCTTTTGGCTCGTCTTGTGCCGGCTATGTGTTAATATATTTACAGATAAAAAAATAACAGTATTAAGACGGTAGGTATGGTTGGTTTTGTTGTTAAAATGGGACTAGAAATTTTATTTTGAAAGAAGGACTCTTGAGATATAAAATGGGACTAGAAATTTTATTTTGAAAGAAGGACTCTTGAGATATTTTTTTCAACATCTTCCATGTCATCTTCTGAACTGGTTTAATTAGTTCAATTTAATTAATTATTTTCATACATTTTGGGCACATACCTCCCTTATTGACGATAACTTACTTCATGGTAAAAATTTAATAAACAATTGGTATTTGCTAATTTAACAGGAACTCACCTATGACTATGGTTACACACTCGATAGTGTGTCTGATTCTGATGGAAACATCAAACAGCTACAATGTCATTGTGGTGCAAAGGAATGTCGTAAGCGCTTGTACTAG
Protein sequence

>MS.gene23379.t1

MEGQVSKTLSSSPSLVCKDISNGQEAISIIATNDFDDPPVAPTGFEYITSNKFSPSIEVPSSAAGCNCKGSCRTKRCPCASHNGSEFSYNNIGRLIEPLDIVVECGPQCGCGPKCGNKVSQQGLSYRLEVYRTPKKGWAVRTWDFIPSGAPVVEYIGVLSRDDELGSANGNDYIFDIDCLHTINGVDGRERRLGNVPLPISNLSEKRDELMEKDPEYCIDAGSFGNVSRFINHGCEPNLFVQCVLSSHRDPRLARVVLFAAEDIPPYQELTYDYGYTLDSVSDSDGNIKQLQCHCGAKECRKRLY