AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23392

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23392.t1 MTR_1g050438 82.317 164 24 2 1 164 223 381 5.56e-91 281
MS.gene23392.t1 MTR_1g050438 66.452 155 46 3 107 257 437 589 8.79e-46 162
MS.gene23392.t1 MTR_0728s0020 82.317 164 24 2 1 164 239 397 2.04e-90 281
MS.gene23392.t1 MTR_0728s0020 63.580 162 53 3 107 264 453 612 1.28e-45 162
MS.gene23392.t1 MTR_3g029590 72.414 145 40 0 1 145 259 403 2.54e-71 233
MS.gene23392.t1 MTR_3g029590 51.948 154 62 5 112 258 491 639 2.28e-29 117
MS.gene23392.t1 MTR_7g092070 68.153 157 48 1 1 157 259 413 6.97e-68 224
MS.gene23392.t1 MTR_7g092070 50.427 117 51 5 143 254 516 630 1.27e-17 83.2
MS.gene23392.t1 MTR_3g435680 67.606 142 46 0 1 142 146 287 4.87e-66 211
MS.gene23392.t1 MTR_5g071070 60.403 149 59 0 1 149 143 291 4.19e-61 204
MS.gene23392.t1 MTR_5g071070 60.403 149 59 0 1 149 225 373 2.75e-60 203
MS.gene23392.t1 MTR_3g435590 58.599 157 54 2 1 157 233 378 3.42e-59 196
MS.gene23392.t1 MTR_5g082830 68.462 130 40 1 1 129 212 341 2.04e-58 198
MS.gene23392.t1 MTR_1g075890 70.833 120 35 0 1 120 224 343 7.22e-58 196
MS.gene23392.t1 MTR_3g070880 65.041 123 43 0 1 123 158 280 2.44e-54 184
MS.gene23392.t1 MTR_8g102100 58.197 122 51 0 2 123 77 198 1.39e-49 168
MS.gene23392.t1 MTR_6g090380 63.551 107 39 0 2 108 99 205 1.15e-48 166
MS.gene23392.t1 MTR_2g090605 60.909 110 43 0 7 116 78 187 1.52e-46 161
MS.gene23392.t1 MTR_3g103960 59.633 109 43 1 1 108 48 156 3.17e-46 157
MS.gene23392.t1 MTR_4g078660 55.140 107 48 0 2 108 56 162 1.05e-42 149
MS.gene23392.t1 MTR_3g464270 52.586 116 54 1 5 119 8 123 1.52e-37 136
MS.gene23392.t1 MTR_3g464260 52.500 120 32 1 1 120 201 295 6.84e-35 132
MS.gene23392.t1 MTR_3g464290 58.750 80 32 1 1 79 95 174 2.68e-28 113
MS.gene23392.t1 MTR_3g464280 43.590 117 32 1 1 117 183 265 1.06e-22 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23392.t1 AT2G41900 63.187 182 50 3 1 182 256 420 1.60e-69 228
MS.gene23392.t1 AT5G12850 62.264 159 59 1 1 158 252 410 3.69e-67 222
MS.gene23392.t1 AT5G12850 41.429 140 54 7 127 254 486 609 5.23e-14 72.4
MS.gene23392.t1 AT5G58620 71.311 122 35 0 1 122 204 325 5.00e-60 201
MS.gene23392.t1 AT2G40140 53.448 174 77 2 1 173 209 379 1.76e-56 191
MS.gene23392.t1 AT2G40140 53.448 174 77 2 1 173 209 379 1.76e-56 191
MS.gene23392.t1 AT3G55980 51.977 177 76 2 1 173 206 377 3.86e-56 190
MS.gene23392.t1 AT3G55980 51.977 177 76 2 1 173 273 444 8.33e-56 191
MS.gene23392.t1 AT2G25900 62.727 110 41 0 2 111 86 195 2.78e-51 171
MS.gene23392.t1 AT2G25900 62.727 110 41 0 2 111 86 195 2.78e-51 171
MS.gene23392.t1 AT1G03790 62.712 118 43 1 2 118 78 195 4.14e-49 167
MS.gene23392.t1 AT2G19810 58.333 120 50 0 2 121 74 193 1.47e-48 165
MS.gene23392.t1 AT4G29190 47.674 172 83 2 2 167 75 245 2.17e-48 165
MS.gene23392.t1 AT5G07500 60.185 108 43 0 1 108 47 154 8.39e-45 152
MS.gene23392.t1 AT5G44260 60.360 111 43 1 2 111 56 166 1.47e-44 155

Find 81 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCGAGCAAGGGATTT+TGG 0.190868 8.2:-62351540 None:intergenic
TGCGAACCCATGGTCTTATT+TGG 0.198433 8.2:+62351571 MS.gene23392:CDS
GCGTGCCTTGCCCTGAATTT+AGG 0.210124 8.2:+62350851 MS.gene23392:CDS
AGACGATGCTCAACATTCTT+TGG 0.265013 8.2:-62351365 None:intergenic
GAGATTGGTTCAATACTTCT+AGG 0.306724 8.2:-62351431 None:intergenic
CAAGCCTCTTTCCTAAATTC+AGG 0.309020 8.2:-62350862 None:intergenic
TGCTGCTGCAATGAATCTTT+TGG 0.323237 8.2:+62351104 MS.gene23392:CDS
CTCCTCCGAGCATTCTCTCC+TGG 0.324682 8.2:-62350802 None:intergenic
TTCTCTCCTGGGTGCACATA+TGG 0.332799 8.2:-62350790 None:intergenic
GGGGACTAGTTGTGATAAAA+AGG 0.333459 8.2:+62350972 MS.gene23392:CDS
AATTTAGGAAAGAGGCTTGT+AGG 0.339756 8.2:+62350866 MS.gene23392:CDS
AACTGCAGAGTGTTAGTTCT+AGG 0.352641 8.2:+62351507 MS.gene23392:CDS
GCGAACCCATGGTCTTATTT+GGG 0.360422 8.2:+62351572 MS.gene23392:CDS
TCCTCCGAGCATTCTCTCCT+GGG 0.362088 8.2:-62350801 None:intergenic
AAAATCCCTTGCTCGGTTGT+TGG 0.380574 8.2:+62351542 MS.gene23392:CDS
CATTTAAACATAAAATCAAC+AGG 0.390688 8.2:+62351632 MS.gene23392:CDS
CGTCTGTCACAGGCTTCATT+TGG 0.399560 8.2:+62351383 MS.gene23392:CDS
TGAGGGCTCATTGAGGAGAT+TGG 0.413555 8.2:-62351446 None:intergenic
CTGCCTTCGTTAACTAGATC+TGG 0.435802 8.2:+62351033 MS.gene23392:CDS
ATGCTCGGAGGAGGGACCTT+AGG 0.439498 8.2:+62350812 MS.gene23392:CDS
GGATTCCTTCAGTAGGAGTT+GGG 0.443254 8.2:-62351680 None:intergenic
TGTATGCAAGTGATGAATTT+CGG 0.450722 8.2:+62350707 MS.gene23392:CDS
AGGATTCCTTCAGTAGGAGT+TGG 0.456339 8.2:-62351681 None:intergenic
AAGAAGATCCTGATCTATCA+TGG 0.470613 8.2:+62351656 MS.gene23392:CDS
AAATAAGACCATGGGTTCGC+AGG 0.476771 8.2:-62351569 None:intergenic
CCCGTGCACAATCTCATGAT+TGG 0.480744 8.2:+62350758 MS.gene23392:CDS
AAGCCTCTTTCCTAAATTCA+GGG 0.483169 8.2:-62350861 None:intergenic
GAGGAAATGCATACATTTGA+GGG 0.492219 8.2:-62351463 None:intergenic
TGGTTCCAAAATCCCTTGCT+CGG 0.492563 8.2:+62351535 MS.gene23392:CDS
TGAGGAAATGCATACATTTG+AGG 0.493617 8.2:-62351464 None:intergenic
AGTGTTAGTTCTAGGGAACT+TGG 0.494640 8.2:+62351515 MS.gene23392:CDS
TCGAACACGACTCTGTAAAG+AGG 0.495482 8.2:+62350951 MS.gene23392:CDS
TTGCCCTGAATTTAGGAAAG+AGG 0.495870 8.2:+62350858 MS.gene23392:CDS
GAGAGCATATTAGTATTTGA+AGG 0.495872 8.2:-62351341 None:intergenic
AGTTGGGCCCATGATAGATC+AGG 0.500358 8.2:-62351664 None:intergenic
AGGAAAGAGGCTTGTAGGCA+TGG 0.515731 8.2:+62350871 MS.gene23392:CDS
GGGGATCCAACAACCGAGCA+AGG 0.519916 8.2:-62351548 None:intergenic
CTCATGGAATATTCGAGTGT+TGG 0.522534 8.2:+62350911 MS.gene23392:CDS
AATAAGACCATGGGTTCGCA+GGG 0.525066 8.2:-62351568 None:intergenic
TTGGATCCCCTGCGAACCCA+TGG 0.529803 8.2:+62351561 MS.gene23392:CDS
CAGGAGAGAATGCTCGGAGG+AGG 0.532536 8.2:+62350803 MS.gene23392:CDS
CTCGGAGGAGGGACCTTAGG+AGG 0.543437 8.2:+62350815 MS.gene23392:CDS
TGTTGAGCATCGTCTGTCAC+AGG 0.547530 8.2:+62351373 MS.gene23392:CDS
TGCACCCAGGAGAGAATGCT+CGG 0.556534 8.2:+62350797 MS.gene23392:CDS
TCCAATCATGAGATTGTGCA+CGG 0.561774 8.2:-62350759 None:intergenic
TGCTTCTGTTTCTCGCGATG+AGG 0.564411 8.2:-62351482 None:intergenic
CGAACACGACTCTGTAAAGA+GGG 0.566742 8.2:+62350952 MS.gene23392:CDS
AGCAGCTGATTTACGTGAAG+GGG 0.568883 8.2:-62351291 None:intergenic
AGGAGAGAATGCTCGGAGGA+GGG 0.569188 8.2:+62350804 MS.gene23392:CDS
TCTTTCCTAAATTCAGGGCA+AGG 0.573700 8.2:-62350856 None:intergenic
ATAGCAGCTGATTTACGTGA+AGG 0.577910 8.2:-62351293 None:intergenic
GTGGCATGCTACCGCATGAA+GGG 0.581241 8.2:-62351409 None:intergenic
ACTGCAGAGTGTTAGTTCTA+GGG 0.587392 8.2:+62351508 MS.gene23392:CDS
GATAAGTGTGAATATGCTCA+TGG 0.587938 8.2:+62350895 MS.gene23392:CDS
CACACGATGAAAAGGAATTG+AGG 0.588152 8.2:+62351007 MS.gene23392:CDS
TAGCAGCTGATTTACGTGAA+GGG 0.588534 8.2:-62351292 None:intergenic
GAGATCCCAAATAAGACCAT+GGG 0.589905 8.2:-62351577 None:intergenic
AGCTGTAAGAGAACCTCCTA+AGG 0.597117 8.2:-62350828 None:intergenic
CAGGTATTCTGACCCAGCAA+TGG 0.597476 8.2:+62351256 MS.gene23392:intron
AGAGATCCCAAATAAGACCA+TGG 0.598006 8.2:-62351578 None:intergenic
GGTGGCATGCTACCGCATGA+AGG 0.604069 8.2:-62351410 None:intergenic
TCATTTGGTGTCCCTTCATG+CGG 0.606648 8.2:+62351398 MS.gene23392:CDS
GAGGCAGATGAACGTAGTGA+AGG 0.609734 8.2:-62351060 None:intergenic
AGAAGATCCTGATCTATCAT+GGG 0.609835 8.2:+62351657 MS.gene23392:CDS
ATGGGCCCAACTCCTACTGA+AGG 0.612123 8.2:+62351675 MS.gene23392:CDS
GTCCATCGCATTAAAAGCAG+AGG 0.612380 8.2:-62351079 None:intergenic
TAGGTGAGGATTCCTTCAGT+AGG 0.613128 8.2:-62351687 None:intergenic
GATCTAGTTAACGAAGGCAG+TGG 0.618002 8.2:-62351030 None:intergenic
AGTCGTGTTCGATACTGATG+TGG 0.638739 8.2:-62350940 None:intergenic
GGGATCCAACAACCGAGCAA+GGG 0.639525 8.2:-62351547 None:intergenic
CCAATCATGAGATTGTGCAC+GGG 0.643224 8.2:-62350758 None:intergenic
ATTGTGCACGGGAACAACGA+AGG 0.674795 8.2:-62350747 None:intergenic
GTCGTGTTCGATACTGATGT+GGG 0.690047 8.2:-62350939 None:intergenic
GAGTGTCCATATGTGCACCC+AGG 0.695919 8.2:+62350784 MS.gene23392:CDS
ATACATTTGAGGGCTCATTG+AGG 0.695981 8.2:-62351453 None:intergenic
ATTGGTTCAATACTTCTAGG+TGG 0.697515 8.2:-62351428 None:intergenic
ACACCAGATCTAGTTAACGA+AGG 0.718756 8.2:-62351036 None:intergenic
ATTTAAACATAAAATCAACA+GGG 0.728844 8.2:+62351633 MS.gene23392:CDS
ATAAGACCATGGGTTCGCAG+GGG 0.737580 8.2:-62351567 None:intergenic
GAACACGACTCTGTAAAGAG+GGG 0.748627 8.2:+62350953 MS.gene23392:CDS
ACCCAGGAGAGAATGCTCGG+AGG 0.756453 8.2:+62350800 MS.gene23392:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAACATAAAATCAACA+GGG + chr8.2:62351633-62351652 MS.gene23392:CDS 15.0%
!! CATTTAAACATAAAATCAAC+AGG + chr8.2:62351632-62351651 MS.gene23392:CDS 20.0%
!!! GTTGATTTTATGTTTAAATG+AGG - chr8.2:62351632-62351651 None:intergenic 20.0%
!!! CCATCTAATTTAATTTTTCC+CGG + chr8.2:62351159-62351178 MS.gene23392:intron 25.0%
CCGGGAAAAATTAAATTAGA+TGG - chr8.2:62351162-62351181 None:intergenic 30.0%
TGTATGCAAGTGATGAATTT+CGG + chr8.2:62350707-62350726 MS.gene23392:CDS 30.0%
! ATTTCGGATGTTTTCTTTCA+AGG + chr8.2:62350723-62350742 MS.gene23392:CDS 30.0%
! GAGAGCATATTAGTATTTGA+AGG - chr8.2:62351344-62351363 None:intergenic 30.0%
AAAAAACAGAAGCCATTGCT+GGG - chr8.2:62351271-62351290 None:intergenic 35.0%
AAGAAGATCCTGATCTATCA+TGG + chr8.2:62351656-62351675 MS.gene23392:CDS 35.0%
AAGCCTCTTTCCTAAATTCA+GGG - chr8.2:62350864-62350883 None:intergenic 35.0%
AATTTAGGAAAGAGGCTTGT+AGG + chr8.2:62350866-62350885 MS.gene23392:CDS 35.0%
AGAAGATCCTGATCTATCAT+GGG + chr8.2:62351657-62351676 MS.gene23392:CDS 35.0%
GAGGAAATGCATACATTTGA+GGG - chr8.2:62351466-62351485 None:intergenic 35.0%
GATAAGTGTGAATATGCTCA+TGG + chr8.2:62350895-62350914 MS.gene23392:CDS 35.0%
TGAGGAAATGCATACATTTG+AGG - chr8.2:62351467-62351486 None:intergenic 35.0%
! ATTGGTTCAATACTTCTAGG+TGG - chr8.2:62351431-62351450 None:intergenic 35.0%
! GAGATTGGTTCAATACTTCT+AGG - chr8.2:62351434-62351453 None:intergenic 35.0%
ACACCAGATCTAGTTAACGA+AGG - chr8.2:62351039-62351058 None:intergenic 40.0%
AGACGATGCTCAACATTCTT+TGG - chr8.2:62351368-62351387 None:intergenic 40.0%
AGAGATCCCAAATAAGACCA+TGG - chr8.2:62351581-62351600 None:intergenic 40.0%
ATACATTTGAGGGCTCATTG+AGG - chr8.2:62351456-62351475 None:intergenic 40.0%
ATGAACGAAAGAGACTAACG+AGG - chr8.2:62351139-62351158 None:intergenic 40.0%
CAAGCCTCTTTCCTAAATTC+AGG - chr8.2:62350865-62350884 None:intergenic 40.0%
CACACGATGAAAAGGAATTG+AGG + chr8.2:62351007-62351026 MS.gene23392:CDS 40.0%
CTCATGGAATATTCGAGTGT+TGG + chr8.2:62350911-62350930 MS.gene23392:CDS 40.0%
GAAAAAACAGAAGCCATTGC+TGG - chr8.2:62351272-62351291 None:intergenic 40.0%
GAGATCCCAAATAAGACCAT+GGG - chr8.2:62351580-62351599 None:intergenic 40.0%
TCCAATCATGAGATTGTGCA+CGG - chr8.2:62350762-62350781 None:intergenic 40.0%
TCTTTCCTAAATTCAGGGCA+AGG - chr8.2:62350859-62350878 None:intergenic 40.0%
TGAACGAAAGAGACTAACGA+GGG - chr8.2:62351138-62351157 None:intergenic 40.0%
TTGCCCTGAATTTAGGAAAG+AGG + chr8.2:62350858-62350877 MS.gene23392:CDS 40.0%
! AACTGCAGAGTGTTAGTTCT+AGG + chr8.2:62351507-62351526 MS.gene23392:CDS 40.0%
! AATGAGATGCCATTTCCAGA+AGG - chr8.2:62351194-62351213 None:intergenic 40.0%
! ATAGCAGCTGATTTACGTGA+AGG - chr8.2:62351296-62351315 None:intergenic 40.0%
! ATGAGATGCCATTTCCAGAA+GGG - chr8.2:62351193-62351212 None:intergenic 40.0%
! CAATTCCTTTTCATCGTGTG+CGG - chr8.2:62351007-62351026 None:intergenic 40.0%
! GCTGCAATGAATCTTTTGGT+CGG + chr8.2:62351108-62351127 MS.gene23392:CDS 40.0%
! TAGCAGCTGATTTACGTGAA+GGG - chr8.2:62351295-62351314 None:intergenic 40.0%
! TGCTGCTGCAATGAATCTTT+TGG + chr8.2:62351104-62351123 MS.gene23392:CDS 40.0%
! TTTTTCCGCACACGATGAAA+AGG + chr8.2:62350999-62351018 MS.gene23392:CDS 40.0%
!! ACTGCAGAGTGTTAGTTCTA+GGG + chr8.2:62351508-62351527 MS.gene23392:CDS 40.0%
!! AGTGTTAGTTCTAGGGAACT+TGG + chr8.2:62351515-62351534 MS.gene23392:CDS 40.0%
!! GGGGACTAGTTGTGATAAAA+AGG + chr8.2:62350972-62350991 MS.gene23392:CDS 40.0%
AAAATCCCTTGCTCGGTTGT+TGG + chr8.2:62351542-62351561 MS.gene23392:CDS 45.0%
AAAATGGCATCTCATCTCCC+AGG + chr8.2:62351237-62351256 MS.gene23392:intron 45.0%
AAATAAGACCATGGGTTCGC+AGG - chr8.2:62351572-62351591 None:intergenic 45.0%
AATAAGACCATGGGTTCGCA+GGG - chr8.2:62351571-62351590 None:intergenic 45.0%
AGCTGTAAGAGAACCTCCTA+AGG - chr8.2:62350831-62350850 None:intergenic 45.0%
AGTCGTGTTCGATACTGATG+TGG - chr8.2:62350943-62350962 None:intergenic 45.0%
ATTGCTGGGTCAGAATACCT+GGG - chr8.2:62351257-62351276 None:intergenic 45.0%
CCAATCATGAGATTGTGCAC+GGG - chr8.2:62350761-62350780 None:intergenic 45.0%
CGAACACGACTCTGTAAAGA+GGG + chr8.2:62350952-62350971 MS.gene23392:CDS 45.0%
CTGCCTTCGTTAACTAGATC+TGG + chr8.2:62351033-62351052 MS.gene23392:CDS 45.0%
GAACACGACTCTGTAAAGAG+GGG + chr8.2:62350953-62350972 MS.gene23392:CDS 45.0%
GATCTAGTTAACGAAGGCAG+TGG - chr8.2:62351033-62351052 None:intergenic 45.0%
GCAGCTTGGTCACATCAAAA+TGG + chr8.2:62351221-62351240 MS.gene23392:intron 45.0%
GTCCATCGCATTAAAAGCAG+AGG - chr8.2:62351082-62351101 None:intergenic 45.0%
GTCGTGTTCGATACTGATGT+GGG - chr8.2:62350942-62350961 None:intergenic 45.0%
TCGAACACGACTCTGTAAAG+AGG + chr8.2:62350951-62350970 MS.gene23392:CDS 45.0%
TCTCATTCTCAAGTGCAGCT+TGG + chr8.2:62351207-62351226 MS.gene23392:intron 45.0%
TGGTTCCAAAATCCCTTGCT+CGG + chr8.2:62351535-62351554 MS.gene23392:CDS 45.0%
! AACAACCGAGCAAGGGATTT+TGG - chr8.2:62351543-62351562 None:intergenic 45.0%
! AGCAGCTGATTTACGTGAAG+GGG - chr8.2:62351294-62351313 None:intergenic 45.0%
! TGAGATGCCATTTCCAGAAG+GGG - chr8.2:62351192-62351211 None:intergenic 45.0%
!! GCGAACCCATGGTCTTATTT+GGG + chr8.2:62351572-62351591 MS.gene23392:CDS 45.0%
!! TCATTTGGTGTCCCTTCATG+CGG + chr8.2:62351398-62351417 MS.gene23392:CDS 45.0%
!! TGCCTCTGCTTTTAATGCGA+TGG + chr8.2:62351077-62351096 MS.gene23392:CDS 45.0%
!! TGCGAACCCATGGTCTTATT+TGG + chr8.2:62351571-62351590 MS.gene23392:CDS 45.0%
AGGAAAGAGGCTTGTAGGCA+TGG + chr8.2:62350871-62350890 MS.gene23392:CDS 50.0%
AGTTGGGCCCATGATAGATC+AGG - chr8.2:62351667-62351686 None:intergenic 50.0%
ATAAGACCATGGGTTCGCAG+GGG - chr8.2:62351570-62351589 None:intergenic 50.0%
ATTGTGCACGGGAACAACGA+AGG - chr8.2:62350750-62350769 None:intergenic 50.0%
CAGGTATTCTGACCCAGCAA+TGG + chr8.2:62351256-62351275 MS.gene23392:intron 50.0%
CATTGCTGGGTCAGAATACC+TGG - chr8.2:62351258-62351277 None:intergenic 50.0%
CCCGTGCACAATCTCATGAT+TGG + chr8.2:62350758-62350777 MS.gene23392:CDS 50.0%
CGTCTGTCACAGGCTTCATT+TGG + chr8.2:62351383-62351402 MS.gene23392:CDS 50.0%
GAGGCAGATGAACGTAGTGA+AGG - chr8.2:62351063-62351082 None:intergenic 50.0%
TGAGGGCTCATTGAGGAGAT+TGG - chr8.2:62351449-62351468 None:intergenic 50.0%
TTCTCTCCTGGGTGCACATA+TGG - chr8.2:62350793-62350812 None:intergenic 50.0%
! GAGATGCCATTTCCAGAAGG+GGG - chr8.2:62351191-62351210 None:intergenic 50.0%
! TGCTTCTGTTTCTCGCGATG+AGG - chr8.2:62351485-62351504 None:intergenic 50.0%
! TGTTGAGCATCGTCTGTCAC+AGG + chr8.2:62351373-62351392 MS.gene23392:CDS 50.0%
AGGAGAGAATGCTCGGAGGA+GGG + chr8.2:62350804-62350823 MS.gene23392:CDS 55.0%
GAGTGTCCATATGTGCACCC+AGG + chr8.2:62350784-62350803 MS.gene23392:CDS 55.0%
GCGTGCCTTGCCCTGAATTT+AGG + chr8.2:62350851-62350870 MS.gene23392:CDS 55.0%
GGGATCCAACAACCGAGCAA+GGG - chr8.2:62351550-62351569 None:intergenic 55.0%
GTGGCATGCTACCGCATGAA+GGG - chr8.2:62351412-62351431 None:intergenic 55.0%
TCCTCCGAGCATTCTCTCCT+GGG - chr8.2:62350804-62350823 None:intergenic 55.0%
TGCACCCAGGAGAGAATGCT+CGG + chr8.2:62350797-62350816 MS.gene23392:CDS 55.0%
! CCATTTCCAGAAGGGGGCAT+AGG - chr8.2:62351185-62351204 None:intergenic 55.0%
! CCTATGCCCCCTTCTGGAAA+TGG + chr8.2:62351182-62351201 MS.gene23392:intron 55.0%
ACCCAGGAGAGAATGCTCGG+AGG + chr8.2:62350800-62350819 MS.gene23392:CDS 60.0%
ATGCTCGGAGGAGGGACCTT+AGG + chr8.2:62350812-62350831 MS.gene23392:CDS 60.0%
CAGGAGAGAATGCTCGGAGG+AGG + chr8.2:62350803-62350822 MS.gene23392:CDS 60.0%
CTCCTCCGAGCATTCTCTCC+TGG - chr8.2:62350805-62350824 None:intergenic 60.0%
GGGGATCCAACAACCGAGCA+AGG - chr8.2:62351551-62351570 None:intergenic 60.0%
GGTGGCATGCTACCGCATGA+AGG - chr8.2:62351413-62351432 None:intergenic 60.0%
TTGGATCCCCTGCGAACCCA+TGG + chr8.2:62351561-62351580 MS.gene23392:CDS 60.0%
! TTCCAGAAGGGGGCATAGGC+CGG - chr8.2:62351181-62351200 None:intergenic 60.0%
CTCGGAGGAGGGACCTTAGG+AGG + chr8.2:62350815-62350834 MS.gene23392:CDS 65.0%
! TCCAGAAGGGGGCATAGGCC+GGG - chr8.2:62351180-62351199 None:intergenic 65.0%
TCCCGGCCTATGCCCCCTTC+TGG + chr8.2:62351176-62351195 MS.gene23392:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62350706 62351694 62350706 ID=MS.gene23392
chr8.2 mRNA 62350706 62351694 62350706 ID=MS.gene23392.t1;Parent=MS.gene23392
chr8.2 exon 62350706 62351139 62350706 ID=MS.gene23392.t1.exon1;Parent=MS.gene23392.t1
chr8.2 CDS 62350706 62351139 62350706 ID=cds.MS.gene23392.t1;Parent=MS.gene23392.t1
chr8.2 exon 62351259 62351694 62351259 ID=MS.gene23392.t1.exon2;Parent=MS.gene23392.t1
chr8.2 CDS 62351259 62351694 62351259 ID=cds.MS.gene23392.t1;Parent=MS.gene23392.t1
Gene Sequence

>MS.gene23392

ATGTATGCAAGTGATGAATTTCGGATGTTTTCTTTCAAGGTCCTTCGTTGTTCCCGTGCACAATCTCATGATTGGACTGAGTGTCCATATGTGCACCCAGGAGAGAATGCTCGGAGGAGGGACCTTAGGAGGTTCTCTTACAGCTGCGTGCCTTGCCCTGAATTTAGGAAAGAGGCTTGTAGGCATGGAGATAAGTGTGAATATGCTCATGGAATATTCGAGTGTTGGCTACACCCACATCAGTATCGAACACGACTCTGTAAAGAGGGGACTAGTTGTGATAAAAAGGTGTGTTTTTCCGCACACGATGAAAAGGAATTGAGGCCACTGCCTTCGTTAACTAGATCTGGTGTTCCTTCACTACGTTCATCTGCCTCTGCTTTTAATGCGATGGACATTGCTGCTGCAATGAATCTTTTGGTCGGTTCACCCTCGTTAGTCTCTTTCGTTCATCCATCTAATTTAATTTTTCCCGGCCTATGCCCCCTTCTGGAAATGGCATCTCATTCTCAAGTGCAGCTTGGTCACATCAAAATGGCATCTCATCTCCCAGGTATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCTTCACGTAAATCAGCTGCTATGAATGAGCTTCAAAACATGTTATCGCCTTCAAATACTAATATGCTCTCTCCAAAGAATGTTGAGCATCGTCTGTCACAGGCTTCATTTGGTGTCCCTTCATGCGGTAGCATGCCACCTAGAAGTATTGAACCAATCTCCTCAATGAGCCCTCAAATGTATGCATTTCCTCATCGCGAGAAACAGAAGCAACAACTGCAGAGTGTTAGTTCTAGGGAACTTGGTTCCAAAATCCCTTGCTCGGTTGTTGGATCCCCTGCGAACCCATGGTCTTATTTGGGATCTCTTACTGAGATGTCTTATCGCACAATACATCCTCATTTAAACATAAAATCAACAGGGAAGAAGATCCTGATCTATCATGGGCCCAACTCCTACTGA
Protein sequence

>MS.gene23392.t1

MYASDEFRMFSFKVLRCSRAQSHDWTECPYVHPGENARRRDLRRFSYSCVPCPEFRKEACRHGDKCEYAHGIFECWLHPHQYRTRLCKEGTSCDKKVCFSAHDEKELRPLPSLTRSGVPSLRSSASAFNAMDIAAAMNLLVGSPSYSDPAMASVFSPSRKSAAMNELQNMLSPSNTNMLSPKNVEHRLSQASFGVPSCGSMPPRSIEPISSMSPQMYAFPHREKQKQQLQSVSSRELGSKIPCSVVGSPANPWSYLGSLTEMSYRTIHPHLNIKSTGKKILIYHGPNSY