AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23470.t1 MTR_1g008290 70.000 140 39 1 94 233 8 144 1.99e-67 216
MS.gene23470.t1 MTR_5g032260 63.551 107 39 0 68 174 299 405 3.24e-38 146
MS.gene23470.t1 MTR_4g035820 27.960 397 257 10 2 374 33 424 1.32e-30 127
MS.gene23470.t1 MTR_1g070355 27.413 259 166 8 4 248 36 286 2.35e-22 101
MS.gene23470.t1 MTR_6g051425 25.000 236 153 5 43 264 19 244 6.72e-22 97.8
MS.gene23470.t1 MTR_5g076070 27.237 257 157 10 25 264 33 276 8.47e-21 93.2
MS.gene23470.t1 MTR_0402s0040 24.906 265 142 5 41 298 26 240 1.90e-20 95.1
MS.gene23470.t1 MTR_7g446520 28.516 256 153 7 5 251 53 287 3.14e-20 92.8
MS.gene23470.t1 MTR_2g098880 35.849 106 62 1 40 139 60 165 3.61e-18 84.7
MS.gene23470.t1 MTR_2g098880 35.849 106 62 1 40 139 72 177 4.34e-18 85.1
MS.gene23470.t1 MTR_1g013060 29.808 208 135 6 40 237 23 229 2.19e-16 79.3
MS.gene23470.t1 MTR_7g446480 33.858 127 83 1 123 248 151 277 5.12e-16 79.7
MS.gene23470.t1 MTR_7g446510 32.308 130 87 1 123 251 166 295 2.36e-15 78.2
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 48 159 7.81e-15 74.7
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 48 159 8.39e-15 74.7
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 68 179 9.41e-15 75.1
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 68 179 9.89e-15 75.1
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 66 177 1.05e-14 74.7
MS.gene23470.t1 MTR_4g067290 34.513 113 69 2 33 141 108 219 1.86e-14 74.7
MS.gene23470.t1 MTR_3g006370 30.968 155 83 4 3 139 5 153 2.72e-14 73.2
MS.gene23470.t1 MTR_2g098920 32.639 144 83 3 11 141 41 183 4.78e-13 70.1
MS.gene23470.t1 MTR_7g446060 35.294 85 55 0 122 206 6 90 3.25e-11 61.6
MS.gene23470.t1 MTR_5g015480 32.000 125 79 3 41 159 56 180 4.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23470.t1 AT4G15090 44.839 310 160 2 251 560 404 702 6.06e-85 282
MS.gene23470.t1 AT4G15090 44.106 263 129 4 3 251 8 266 1.53e-61 218
MS.gene23470.t1 AT4G15090 44.839 310 160 2 251 560 404 702 6.06e-85 282
MS.gene23470.t1 AT4G15090 44.106 263 129 4 3 251 8 266 1.53e-61 218
MS.gene23470.t1 AT4G15090 44.839 310 160 2 251 560 404 702 6.06e-85 282
MS.gene23470.t1 AT4G15090 44.106 263 129 4 3 251 8 266 1.53e-61 218
MS.gene23470.t1 AT4G15090 44.839 310 160 2 251 560 404 702 6.06e-85 282
MS.gene23470.t1 AT4G15090 44.106 263 129 4 3 251 8 266 1.53e-61 218
MS.gene23470.t1 AT4G15090 44.839 310 160 2 251 560 404 702 6.06e-85 282
MS.gene23470.t1 AT4G15090 44.106 263 129 4 3 251 8 266 1.53e-61 218
MS.gene23470.t1 AT3G22170 47.037 270 142 1 247 516 409 677 6.59e-81 272
MS.gene23470.t1 AT3G22170 40.684 263 109 4 14 251 35 275 1.31e-53 196
MS.gene23470.t1 AT3G22170 47.037 270 142 1 247 516 409 677 6.59e-81 272
MS.gene23470.t1 AT3G22170 40.684 263 109 4 14 251 35 275 1.31e-53 196
MS.gene23470.t1 AT1G76320 45.522 268 144 1 251 518 341 606 3.96e-78 261
MS.gene23470.t1 AT1G76320 43.891 221 113 3 45 264 1 211 8.78e-53 192
MS.gene23470.t1 AT1G76320 45.522 268 144 1 251 518 341 606 8.20e-78 261
MS.gene23470.t1 AT1G76320 43.891 221 113 3 45 264 1 211 1.66e-52 192
MS.gene23470.t1 AT1G76320 45.522 268 144 1 251 518 341 606 8.51e-78 261
MS.gene23470.t1 AT1G76320 43.891 221 113 3 45 264 1 211 1.86e-52 192
MS.gene23470.t1 AT1G76320 45.522 268 144 1 251 518 341 606 8.51e-78 261
MS.gene23470.t1 AT1G76320 43.891 221 113 3 45 264 1 211 1.86e-52 192
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 291 556 2.54e-62 219
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 348 613 4.57e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 20 214 2.02e-32 133
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 348 613 4.57e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 20 214 2.02e-32 133
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 348 613 5.35e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 20 214 2.37e-32 133
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 362 627 7.02e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 34 228 1.94e-32 133
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 348 613 7.34e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 20 214 2.82e-32 133
MS.gene23470.t1 AT4G19990 44.361 266 145 2 247 509 348 613 7.34e-62 219
MS.gene23470.t1 AT4G19990 34.783 230 98 3 40 252 20 214 2.82e-32 133
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 3.71e-57 205
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 2.76e-37 148
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 276 578 4.20e-57 205
MS.gene23470.t1 AT2G32250 42.788 208 79 4 45 251 1 169 2.23e-36 145
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 4.62e-57 206
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 3.65e-37 148
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 4.62e-57 206
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 3.65e-37 148
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 276 578 4.81e-57 205
MS.gene23470.t1 AT2G32250 42.788 208 79 4 45 251 1 169 2.42e-36 145
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 5.58e-57 206
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 4.06e-37 147
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 5.58e-57 206
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 4.06e-37 147
MS.gene23470.t1 AT2G32250 37.778 315 178 5 214 522 317 619 5.58e-57 206
MS.gene23470.t1 AT2G32250 43.062 209 79 4 44 251 41 210 4.06e-37 147
MS.gene23470.t1 AT2G27110 35.662 272 170 3 249 517 228 497 2.48e-51 188
MS.gene23470.t1 AT4G38180 35.018 277 169 3 252 522 429 700 3.99e-51 189
MS.gene23470.t1 AT4G38180 36.481 233 134 4 40 264 72 298 1.42e-36 146
MS.gene23470.t1 AT2G27110 35.662 272 170 3 249 517 373 642 6.89e-51 189
MS.gene23470.t1 AT2G27110 28.571 217 129 6 37 251 45 237 2.75e-19 92.8
MS.gene23470.t1 AT2G27110 35.662 272 170 3 249 517 373 642 6.89e-51 189
MS.gene23470.t1 AT2G27110 28.571 217 129 6 37 251 45 237 2.75e-19 92.8
MS.gene23470.t1 AT1G52520 35.000 280 170 4 246 513 419 698 3.51e-48 179
MS.gene23470.t1 AT1G52520 30.588 255 158 4 7 251 43 288 1.91e-26 115
MS.gene23470.t1 AT4G38170 34.457 267 165 5 252 511 194 457 4.99e-45 168
MS.gene23470.t1 AT1G80010 32.714 269 168 5 252 511 450 714 9.77e-38 149
MS.gene23470.t1 AT1G80010 32.759 232 142 4 41 264 95 320 4.36e-27 117
MS.gene23470.t1 AT3G06250 31.970 269 173 4 246 509 496 759 3.24e-34 139
MS.gene23470.t1 AT3G06250 27.888 251 130 5 18 252 152 367 4.55e-21 98.2
MS.gene23470.t1 AT3G06250 32.381 105 62 1 34 138 21 116 3.98e-11 66.6
MS.gene23470.t1 AT3G06250 31.970 269 173 4 246 509 496 759 3.24e-34 139
MS.gene23470.t1 AT3G06250 27.888 251 130 5 18 252 152 367 4.55e-21 98.2
MS.gene23470.t1 AT3G06250 32.381 105 62 1 34 138 21 116 3.98e-11 66.6
MS.gene23470.t1 AT3G06250 31.970 269 173 4 246 509 496 759 3.24e-34 139
MS.gene23470.t1 AT3G06250 27.888 251 130 5 18 252 152 367 4.55e-21 98.2
MS.gene23470.t1 AT3G06250 32.381 105 62 1 34 138 21 116 3.98e-11 66.6
MS.gene23470.t1 AT5G18960 31.227 269 175 4 246 509 520 783 2.24e-33 136
MS.gene23470.t1 AT5G18960 28.632 234 130 5 22 252 192 391 5.89e-20 94.7
MS.gene23470.t1 AT5G18960 32.773 119 71 1 20 138 22 131 6.34e-13 72.4
MS.gene23470.t1 AT5G18960 31.227 269 175 4 246 509 520 783 2.24e-33 136
MS.gene23470.t1 AT5G18960 28.632 234 130 5 22 252 192 391 5.89e-20 94.7
MS.gene23470.t1 AT5G18960 32.773 119 71 1 20 138 22 131 6.34e-13 72.4
MS.gene23470.t1 AT1G10240 27.228 202 143 1 252 453 407 604 8.46e-22 100
MS.gene23470.t1 AT1G10240 26.772 254 162 9 24 264 34 276 7.05e-19 91.3
MS.gene23470.t1 AT1G10240 27.228 202 143 1 252 453 407 604 8.46e-22 100
MS.gene23470.t1 AT1G10240 26.772 254 162 9 24 264 34 276 7.05e-19 91.3
MS.gene23470.t1 AT3G07500 38.235 136 77 3 12 140 1 136 4.72e-16 77.8
MS.gene23470.t1 AT3G59470 32.117 137 87 3 8 141 40 173 1.12e-15 77.8
MS.gene23470.t1 AT3G59470 32.117 137 87 3 8 141 40 173 1.12e-15 77.8
MS.gene23470.t1 AT3G59470 32.117 137 87 3 8 141 52 185 1.28e-15 77.8
MS.gene23470.t1 AT5G28530 26.087 207 142 4 249 454 356 552 1.01e-13 74.7
MS.gene23470.t1 AT2G43280 32.692 104 65 1 40 138 21 124 1.07e-13 70.9
MS.gene23470.t1 AT5G28530 26.087 207 146 4 249 454 356 556 1.12e-13 74.7
MS.gene23470.t1 AT5G28530 26.087 207 142 4 249 454 419 615 1.32e-13 74.3
MS.gene23470.t1 AT5G28530 25.101 247 152 10 41 264 55 291 1.78e-13 73.9
MS.gene23470.t1 AT5G28530 26.087 207 142 4 249 454 419 615 1.32e-13 74.3
MS.gene23470.t1 AT5G28530 25.101 247 152 10 41 264 55 291 1.78e-13 73.9
MS.gene23470.t1 AT4G12850 35.455 110 67 2 30 138 3 109 1.38e-13 68.9
MS.gene23470.t1 AT5G28530 26.087 207 146 4 249 454 419 619 1.54e-13 74.3
MS.gene23470.t1 AT5G28530 25.101 247 152 10 41 264 55 291 1.80e-13 73.9
MS.gene23470.t1 AT4G12850 35.455 110 67 2 30 138 3 109 2.49e-13 67.8
MS.gene23470.t1 AT4G12850 36.000 100 63 1 40 138 10 109 3.40e-13 68.9

Find 90 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCACTCTTTATTCTTCT+TGG 0.122394 7.3:+14295822 None:intergenic
AAAGAATTTGTGATGGAAAA+TGG 0.198140 7.3:-14297519 MS.gene23470:CDS
AAAATATAAAGTTGCTTTAC+AGG 0.207491 7.3:-14296504 MS.gene23470:CDS
AACGCCGATCTTTATCTAAA+TGG 0.218779 7.3:+14297284 None:intergenic
GAAATTTCAAGTTGAAGTTT+TGG 0.239158 7.3:-14296363 MS.gene23470:CDS
AACAACAATTTGAAGATAAA+TGG 0.257844 7.3:-14296724 MS.gene23470:intron
TTCATATCCTCCATATTCTT+TGG 0.259642 7.3:+14297339 None:intergenic
TATGCTAAGTCAGTTGGATT+TGG 0.280799 7.3:-14297694 MS.gene23470:CDS
TCAAATTCCATTCCAATGTT+AGG 0.289388 7.3:+14297751 None:intergenic
TTCATGTACCGTTGATTTAG+AGG 0.293148 7.3:-14297791 MS.gene23470:CDS
CGGCGTTTGGCTTTAGAATC+AGG 0.298007 7.3:-14297268 MS.gene23470:CDS
GCCACAATGGCCAAAGAATA+TGG 0.298617 7.3:-14297349 MS.gene23470:CDS
GAGCTTTATTGATTCCTCTA+TGG 0.299611 7.3:+14297428 None:intergenic
ATGTAAGAAAACTACATTAA+AGG 0.307863 7.3:-14296537 MS.gene23470:CDS
TTGATCTATTTGGAGATGAT+TGG 0.321918 7.3:-14296682 MS.gene23470:CDS
ATAATGTGTCATACCATTCT+TGG 0.328571 7.3:+14295594 None:intergenic
ATGCTAAGTCAGTTGGATTT+GGG 0.354359 7.3:-14297693 MS.gene23470:CDS
AGGTATTTACTGCTTCTCTT+TGG 0.367389 7.3:+14295652 None:intergenic
AATGTATCATTCATGTAAAC+AGG 0.389787 7.3:+14296623 None:intergenic
GGCACAAGCAACCTGTTCTT+AGG 0.392197 7.3:-14296442 MS.gene23470:CDS
GCTATTGAATTTCTCGAAGA+AGG 0.413131 7.3:-14296014 MS.gene23470:CDS
CCTAAAAGAGCAAATACAAA+AGG 0.426549 7.3:-14295849 MS.gene23470:CDS
AATGGAGAACATTCTATTGA+TGG 0.437522 7.3:-14297853 MS.gene23470:CDS
ATGCTTGCTTCTAACATCCT+TGG 0.437672 7.3:+14296103 None:intergenic
ATTGACATTTGCTTCTCAAA+AGG 0.437914 7.3:+14296410 None:intergenic
TTTAGATAAAGATCGGCGTT+TGG 0.438381 7.3:-14297281 MS.gene23470:CDS
TTCACCATTGAGAACATTTG+AGG 0.438475 7.3:+14295632 None:intergenic
TCTTTGTAGACATTCATTGA+TGG 0.446762 7.3:-14296183 MS.gene23470:CDS
ATATGAAGAACGTGAACATT+GGG 0.447625 7.3:-14296648 MS.gene23470:CDS
GGAAAATAATGTGCATATGC+TGG 0.447627 7.3:+14297454 None:intergenic
ATATGAAAACATTGGTTGCT+TGG 0.449564 7.3:-14297323 MS.gene23470:CDS
AGAAGATGTGTGTTCTAGTA+AGG 0.457441 7.3:-14296063 MS.gene23470:CDS
AACAGCTGCATTGCCAAGAA+TGG 0.469389 7.3:-14295607 MS.gene23470:intron
TCCATATTCTTTGGCCATTG+TGG 0.472191 7.3:+14297348 None:intergenic
TGAAGATAAATGGCATGAAA+TGG 0.480495 7.3:-14296714 MS.gene23470:intron
TCAATTGCATAAAAGAATCC+TGG 0.481905 7.3:+14297196 None:intergenic
TTCTTAAAATATAGTGTGAT+GGG 0.486629 7.3:+14296132 None:intergenic
AAAGTCGAAAATTGTAAAAG+TGG 0.487862 7.3:+14296292 None:intergenic
GGTGATGGAGTCCTAAGAAC+AGG 0.491171 7.3:+14296431 None:intergenic
CTAAAAGAGCAAATACAAAA+GGG 0.494734 7.3:-14295848 MS.gene23470:CDS
CGTGTTAAAAGAATTTGTGA+TGG 0.498075 7.3:-14297526 MS.gene23470:CDS
ATTGAAACTTTGTACCATGT+TGG 0.499751 7.3:-14297394 MS.gene23470:CDS
ACTCATTATGCTAAGTCAGT+TGG 0.500199 7.3:-14297700 MS.gene23470:CDS
ATGGAAGTTGTTGATCGGAA+TGG 0.500501 7.3:-14297871 MS.gene23470:CDS
AACAGTGTGCAACTATCAAC+CGG 0.501312 7.3:-14295935 MS.gene23470:CDS
AGGAGATGCAAATGCAATGT+TGG 0.501317 7.3:-14297248 MS.gene23470:CDS
CTCATGCAAGAACAAAATCC+AGG 0.505455 7.3:-14297214 MS.gene23470:CDS
ATATGATTCATTATATCAAA+AGG 0.508085 7.3:-14296036 MS.gene23470:CDS
AATACCTCAAATGTTCTCAA+TGG 0.509038 7.3:-14295636 MS.gene23470:CDS
AGTTATGCTTGCACAAGATA+CGG 0.514711 7.3:-14297616 MS.gene23470:CDS
TCAAAGTTTCTTCAAGTGCA+TGG 0.515683 7.3:+14295958 None:intergenic
TATATGAAGAACGTGAACAT+TGG 0.518179 7.3:-14296649 MS.gene23470:CDS
AGGAAAGTCATCATGGTTGA+AGG 0.520113 7.3:-14295494 None:intergenic
AAATCCACGTCCTTGTTTGA+AGG 0.523815 7.3:-14297569 MS.gene23470:CDS
TTGATGGCATTCCAAGCTGT+TGG 0.525056 7.3:-14296167 MS.gene23470:CDS
CTTCTTAAAATATAGTGTGA+TGG 0.527660 7.3:+14296131 None:intergenic
ATTTGCTTCTCAAAAGGTGA+TGG 0.540522 7.3:+14296416 None:intergenic
TCCACGTCCTTGTTTGAAGG+TGG 0.544839 7.3:-14297566 MS.gene23470:CDS
CAACATAGACACCAACAGCT+TGG 0.547134 7.3:+14296156 None:intergenic
GAAACCATTTAGATAAAGAT+CGG 0.550718 7.3:-14297288 MS.gene23470:CDS
AATTAATGGAAGTTGTTGAT+CGG 0.553519 7.3:-14297876 None:intergenic
TTATTGATTCCTCTATGGCA+AGG 0.554774 7.3:+14297433 None:intergenic
ATGGAGAACATTCTATTGAT+GGG 0.556834 7.3:-14297852 MS.gene23470:CDS
TATGGAGGATATGAAAACAT+TGG 0.557417 7.3:-14297331 MS.gene23470:CDS
CCACGTCCTTGTTTGAAGGT+GGG 0.564321 7.3:-14297565 MS.gene23470:CDS
AGGATAGAGAAGAGGTGGAA+AGG 0.569767 7.3:-14296484 MS.gene23470:CDS
TCAAGAACCTAACATTGGAA+TGG 0.572602 7.3:-14297758 MS.gene23470:CDS
AGAGTGTGAAGTCTCGAAGA+AGG 0.573375 7.3:-14296246 MS.gene23470:CDS
TGCTTTACAGGATAGAGAAG+AGG 0.576511 7.3:-14296492 MS.gene23470:CDS
TGCAATTGATATGGATGATG+AGG 0.581691 7.3:-14297182 MS.gene23470:CDS
AGATAAATGGCATGAAATGG+TGG 0.588682 7.3:-14296711 MS.gene23470:CDS
CCCACCTTCAAACAAGGACG+TGG 0.589716 7.3:+14297565 None:intergenic
TTGTTTGAAGGTGGGATGCG+AGG 0.591368 7.3:-14297557 MS.gene23470:CDS
TCGCATCCCACCTTCAAACA+AGG 0.596792 7.3:+14297559 None:intergenic
ATAAAGAGTGGGATCGAGAG+AGG 0.602973 7.3:-14295813 MS.gene23470:CDS
GGTGGTCAAGAACCTAACAT+TGG 0.606305 7.3:-14297763 MS.gene23470:CDS
TGCTTGTTCTCACTCCAACA+TGG 0.609628 7.3:+14297380 None:intergenic
GAATGAAGAGCAAGTTGTCA+AGG 0.614810 7.3:-14297830 MS.gene23470:CDS
ACCGTTAGCCTCTAAATCAA+CGG 0.614838 7.3:+14297783 None:intergenic
TTAGAAGCAAGCATCATACA+AGG 0.616240 7.3:-14296094 MS.gene23470:CDS
AAAATCGACAAGGAAAACGT+TGG 0.622612 7.3:-14295906 MS.gene23470:CDS
TAAAAGAGCAAATACAAAAG+GGG 0.623948 7.3:-14295847 MS.gene23470:CDS
ACCGTTGATTTAGAGGCTAA+CGG 0.628314 7.3:-14297784 MS.gene23470:CDS
TTTACAGGATAGAGAAGAGG+TGG 0.629743 7.3:-14296489 MS.gene23470:CDS
CTCCAAGAAGAATAAAGAGT+GGG 0.644223 7.3:-14295824 MS.gene23470:CDS
CCGGTCTTTGAAAATCGACA+AGG 0.646121 7.3:-14295916 MS.gene23470:CDS
GCAATTGATATGGATGATGA+GGG 0.673224 7.3:-14297181 MS.gene23470:CDS
GCTCCAAGAAGAATAAAGAG+TGG 0.689620 7.3:-14295825 MS.gene23470:CDS
ACAATGGCCAAAGAATATGG+AGG 0.745699 7.3:-14297346 MS.gene23470:CDS
GTTGATTTAGAGGCTAACGG+TGG 0.762259 7.3:-14297781 MS.gene23470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTCATTATATCAAA+AGG - chr7.3:14297332-14297351 MS.gene23470:CDS 15.0%
!! AACAACAATTTGAAGATAAA+TGG - chr7.3:14296644-14296663 MS.gene23470:CDS 20.0%
!! ATCTAGTTGTAAAGTAAAAA+AGG - chr7.3:14297590-14297609 MS.gene23470:CDS 20.0%
!! ATGTAAGAAAACTACATTAA+AGG - chr7.3:14296831-14296850 MS.gene23470:intron 20.0%
!! TTCTTAAAATATAGTGTGAT+GGG + chr7.3:14297239-14297258 None:intergenic 20.0%
!!! AAAATATAAAGTTGCTTTAC+AGG - chr7.3:14296864-14296883 MS.gene23470:intron 20.0%
!!! AAATTTCAAGTTGAAGTTTT+GGG - chr7.3:14297006-14297025 MS.gene23470:intron 20.0%
!!! ATTCTTTTATGCAATTGATA+TGG - chr7.3:14296177-14296196 MS.gene23470:CDS 20.0%
!!! TACATGAATGATACATTTTT+TGG - chr7.3:14296751-14296770 MS.gene23470:intron 20.0%
!!! TTTTGTTTTCTTATTTTCAC+AGG - chr7.3:14297854-14297873 MS.gene23470:CDS 20.0%
! AAAGTCGAAAATTGTAAAAG+TGG + chr7.3:14297079-14297098 None:intergenic 25.0%
! AATGTATCATTCATGTAAAC+AGG + chr7.3:14296748-14296767 None:intergenic 25.0%
! ACATATGCATATATAAGTCT+TGG - chr7.3:14296617-14296636 MS.gene23470:CDS 25.0%
! CTAAAAGAGCAAATACAAAA+GGG - chr7.3:14297520-14297539 MS.gene23470:CDS 25.0%
! CTTCTTAAAATATAGTGTGA+TGG + chr7.3:14297240-14297259 None:intergenic 25.0%
! GAAACCATTTAGATAAAGAT+CGG - chr7.3:14296080-14296099 MS.gene23470:CDS 25.0%
! GTGGAAAAATTTGATCTATT+TGG - chr7.3:14296676-14296695 MS.gene23470:CDS 25.0%
! TAAAAGAGCAAATACAAAAG+GGG - chr7.3:14297521-14297540 MS.gene23470:CDS 25.0%
! TAAACAATCACTTTCAATCA+AGG - chr7.3:14296341-14296360 MS.gene23470:CDS 25.0%
! TGATTGTTTACACCAATAAA+AGG + chr7.3:14296331-14296350 None:intergenic 25.0%
!! AAAATATGGTTTAGAGCAAT+GGG - chr7.3:14296421-14296440 MS.gene23470:CDS 25.0%
!! AAAGAATTTGTGATGGAAAA+TGG - chr7.3:14295849-14295868 MS.gene23470:CDS 25.0%
!! TCGCATGAAAAATGTATTTT+GGG - chr7.3:14296210-14296229 MS.gene23470:CDS 25.0%
!!! AAGTTTTGAGAGTTACAATT+TGG - chr7.3:14297383-14297402 MS.gene23470:CDS 25.0%
!!! ATGAATGATACATTTTTTGG+TGG - chr7.3:14296754-14296773 MS.gene23470:intron 25.0%
!!! CACACTATATTTTAAGAAGA+TGG - chr7.3:14297241-14297260 MS.gene23470:CDS 25.0%
!!! GAAATTTCAAGTTGAAGTTT+TGG - chr7.3:14297005-14297024 MS.gene23470:intron 25.0%
!!! TCATATGGTTGATGAAAATA+TGG - chr7.3:14296407-14296426 MS.gene23470:CDS 25.0%
AATACCTCAAATGTTCTCAA+TGG - chr7.3:14297732-14297751 MS.gene23470:CDS 30.0%
AATGAAAGAGGCTATTAAAG+AGG - chr7.3:14296486-14296505 MS.gene23470:CDS 30.0%
AATGGAGAACATTCTATTGA+TGG - chr7.3:14295515-14295534 MS.gene23470:intron 30.0%
ATAATGTGTCATACCATTCT+TGG + chr7.3:14297777-14297796 None:intergenic 30.0%
ATATGAAGAACGTGAACATT+GGG - chr7.3:14296720-14296739 MS.gene23470:intron 30.0%
ATGGAGAACATTCTATTGAT+GGG - chr7.3:14295516-14295535 MS.gene23470:intron 30.0%
ATTGAAACTTTGTACCATGT+TGG - chr7.3:14295974-14295993 MS.gene23470:CDS 30.0%
ATTGACATTTGCTTCTCAAA+AGG + chr7.3:14296961-14296980 None:intergenic 30.0%
CAAAATCGATGTCGATAATT+TGG + chr7.3:14296517-14296536 None:intergenic 30.0%
CCTAAAAGAGCAAATACAAA+AGG - chr7.3:14297519-14297538 MS.gene23470:CDS 30.0%
CGTGTTAAAAGAATTTGTGA+TGG - chr7.3:14295842-14295861 MS.gene23470:CDS 30.0%
TATATGAAGAACGTGAACAT+TGG - chr7.3:14296719-14296738 MS.gene23470:intron 30.0%
TATGGAGGATATGAAAACAT+TGG - chr7.3:14296037-14296056 MS.gene23470:CDS 30.0%
TCAAATTCCATTCCAATGTT+AGG + chr7.3:14295620-14295639 None:intergenic 30.0%
TCAATTGCATAAAAGAATCC+TGG + chr7.3:14296175-14296194 None:intergenic 30.0%
TCTTTGGCATATACTTAGAA+AGG - chr7.3:14296537-14296556 MS.gene23470:CDS 30.0%
TCTTTGTAGACATTCATTGA+TGG - chr7.3:14297185-14297204 MS.gene23470:CDS 30.0%
TGAAGATAAATGGCATGAAA+TGG - chr7.3:14296654-14296673 MS.gene23470:CDS 30.0%
TGATCAGTTATGATTGCATT+TGG + chr7.3:14296457-14296476 None:intergenic 30.0%
TGGTATGACACATTATTCTT+AGG - chr7.3:14297781-14297800 MS.gene23470:CDS 30.0%
TTCATATCCTCCATATTCTT+TGG + chr7.3:14296032-14296051 None:intergenic 30.0%
TTGATCTATTTGGAGATGAT+TGG - chr7.3:14296686-14296705 MS.gene23470:CDS 30.0%
! AAGCAAAATTTTTGCCACAA+TGG - chr7.3:14296006-14296025 MS.gene23470:CDS 30.0%
! AGAAGCTTAGTCATGTTTTA+AGG - chr7.3:14296566-14296585 MS.gene23470:CDS 30.0%
! ATATGAAAACATTGGTTGCT+TGG - chr7.3:14296045-14296064 MS.gene23470:CDS 30.0%
! CCTTTTGTATTTGCTCTTTT+AGG + chr7.3:14297522-14297541 None:intergenic 30.0%
! GAAAATATGGTTTAGAGCAA+TGG - chr7.3:14296420-14296439 MS.gene23470:CDS 30.0%
! GTCGCATGAAAAATGTATTT+TGG - chr7.3:14296209-14296228 MS.gene23470:CDS 30.0%
!! CATGAAAAATGTATTTTGGG+TGG - chr7.3:14296213-14296232 MS.gene23470:CDS 30.0%
!! GAAGCTTAGTCATGTTTTAA+GGG - chr7.3:14296567-14296586 MS.gene23470:CDS 30.0%
!! TATTTTAAGAAGATGGACCA+AGG - chr7.3:14297248-14297267 MS.gene23470:CDS 30.0%
!!! GTCGCTTTTTTGAGTATAAT+GGG - chr7.3:14297160-14297179 MS.gene23470:CDS 30.0%
!!! TGTCGCTTTTTTGAGTATAA+TGG - chr7.3:14297159-14297178 MS.gene23470:CDS 30.0%
AAAACATGACTAAGCTTCTC+AGG + chr7.3:14296565-14296584 None:intergenic 35.0%
AAAATCGACAAGGAAAACGT+TGG - chr7.3:14297462-14297481 MS.gene23470:CDS 35.0%
AACGCCGATCTTTATCTAAA+TGG + chr7.3:14296087-14296106 None:intergenic 35.0%
ACACCAATAAAAGGAGCAAA+TGG + chr7.3:14296322-14296341 None:intergenic 35.0%
ACTCATTATGCTAAGTCAGT+TGG - chr7.3:14295668-14295687 MS.gene23470:intron 35.0%
AGAAGATGTGTGTTCTAGTA+AGG - chr7.3:14297305-14297324 MS.gene23470:CDS 35.0%
AGACCAAGAACACTTTCATA+TGG - chr7.3:14296392-14296411 MS.gene23470:CDS 35.0%
AGAGAAGACTATCAAGAGTT+TGG - chr7.3:14296247-14296266 MS.gene23470:CDS 35.0%
AGATAAATGGCATGAAATGG+TGG - chr7.3:14296657-14296676 MS.gene23470:CDS 35.0%
AGGTATTTACTGCTTCTCTT+TGG + chr7.3:14297719-14297738 None:intergenic 35.0%
AGTTATGCTTGCACAAGATA+CGG - chr7.3:14295752-14295771 MS.gene23470:intron 35.0%
ATCCCACTCTTTATTCTTCT+TGG + chr7.3:14297549-14297568 None:intergenic 35.0%
ATGCTAAGTCAGTTGGATTT+GGG - chr7.3:14295675-14295694 MS.gene23470:intron 35.0%
ATTTGCTTCTCAAAAGGTGA+TGG + chr7.3:14296955-14296974 None:intergenic 35.0%
CACTTTCAATCAAGGTTACT+TGG - chr7.3:14296349-14296368 MS.gene23470:CDS 35.0%
CTCCAAGAAGAATAAAGAGT+GGG - chr7.3:14297544-14297563 MS.gene23470:CDS 35.0%
GCAATTGATATGGATGATGA+GGG - chr7.3:14296187-14296206 MS.gene23470:CDS 35.0%
GCTATTGAATTTCTCGAAGA+AGG - chr7.3:14297354-14297373 MS.gene23470:CDS 35.0%
GGAAAATAATGTGCATATGC+TGG + chr7.3:14295917-14295936 None:intergenic 35.0%
TATGCTAAGTCAGTTGGATT+TGG - chr7.3:14295674-14295693 MS.gene23470:intron 35.0%
TCAAAGTTTCTTCAAGTGCA+TGG + chr7.3:14297413-14297432 None:intergenic 35.0%
TCAAGAACCTAACATTGGAA+TGG - chr7.3:14295610-14295629 MS.gene23470:CDS 35.0%
TCAAGATAGAGCAATGAAAG+AGG - chr7.3:14296474-14296493 MS.gene23470:CDS 35.0%
TCAGTTATGATTGCATTTGG+AGG + chr7.3:14296454-14296473 None:intergenic 35.0%
TGCAATTGATATGGATGATG+AGG - chr7.3:14296186-14296205 MS.gene23470:CDS 35.0%
TTAGAAGCAAGCATCATACA+AGG - chr7.3:14297274-14297293 MS.gene23470:CDS 35.0%
TTCACCATTGAGAACATTTG+AGG + chr7.3:14297739-14297758 None:intergenic 35.0%
TTTAGATAAAGATCGGCGTT+TGG - chr7.3:14296087-14296106 MS.gene23470:CDS 35.0%
! CATTATTTTCCTTGCCATAG+AGG - chr7.3:14295926-14295945 MS.gene23470:CDS 35.0%
! TTTTCACAGGAAAGTCATCA+TGG - chr7.3:14297867-14297886 MS.gene23470:CDS 35.0%
!! ATGCCATTTGCTCCTTTTAT+TGG - chr7.3:14296316-14296335 MS.gene23470:CDS 35.0%
!! CAACCATATGAAAGTGTTCT+TGG + chr7.3:14296398-14296417 None:intergenic 35.0%
!! GAGCTTTATTGATTCCTCTA+TGG + chr7.3:14295943-14295962 None:intergenic 35.0%
!! TTATTGATTCCTCTATGGCA+AGG + chr7.3:14295938-14295957 None:intergenic 35.0%
!! TTCATGTACCGTTGATTTAG+AGG - chr7.3:14295577-14295596 MS.gene23470:intron 35.0%
!!! ATCGACATCGATTTTGTCTT+TGG - chr7.3:14296521-14296540 MS.gene23470:CDS 35.0%
!!! GTTGAAGTTTTGGGATTATC+TGG - chr7.3:14297015-14297034 MS.gene23470:intron 35.0%
AACAGTGTGCAACTATCAAC+CGG - chr7.3:14297433-14297452 MS.gene23470:CDS 40.0%
ACAATGGCCAAAGAATATGG+AGG - chr7.3:14296022-14296041 MS.gene23470:CDS 40.0%
AGGAGATGCAAATGCAATGT+TGG - chr7.3:14296120-14296139 MS.gene23470:CDS 40.0%
ATGCTTGCTTCTAACATCCT+TGG + chr7.3:14297268-14297287 None:intergenic 40.0%
ATGGAAGTTGTTGATCGGAA+TGG - chr7.3:14295497-14295516 MS.gene23470:intron 40.0%
CTCATGCAAGAACAAAATCC+AGG - chr7.3:14296154-14296173 MS.gene23470:CDS 40.0%
CTGGAAAAAGTTCGTGATTG+TGG + chr7.3:14295898-14295917 None:intergenic 40.0%
GAATGAAGAGCAAGTTGTCA+AGG - chr7.3:14295538-14295557 MS.gene23470:intron 40.0%
GCTCCAAGAAGAATAAAGAG+TGG - chr7.3:14297543-14297562 MS.gene23470:CDS 40.0%
TCCATATTCTTTGGCCATTG+TGG + chr7.3:14296023-14296042 None:intergenic 40.0%
TGCTTTACAGGATAGAGAAG+AGG - chr7.3:14296876-14296895 MS.gene23470:intron 40.0%
TTTACAGGATAGAGAAGAGG+TGG - chr7.3:14296879-14296898 MS.gene23470:intron 40.0%
! AAATCCACGTCCTTGTTTGA+AGG - chr7.3:14295799-14295818 MS.gene23470:CDS 40.0%
! ACCGTTAGCCTCTAAATCAA+CGG + chr7.3:14295588-14295607 None:intergenic 40.0%
! ATATGGTTTAGAGCAATGGG+TGG - chr7.3:14296424-14296443 MS.gene23470:CDS 40.0%
!! ACCGTTGATTTAGAGGCTAA+CGG - chr7.3:14295584-14295603 MS.gene23470:intron 40.0%
!! GTATTTTGGGTGGATGCAAA+AGG - chr7.3:14296223-14296242 MS.gene23470:CDS 40.0%
!!! CCTTGTCGATTTTCAAAGAC+CGG + chr7.3:14297455-14297474 None:intergenic 40.0%
!!! GGCAAGCTGATTTTAAGACA+TGG - chr7.3:14296905-14296924 MS.gene23470:intron 40.0%
AACAGCTGCATTGCCAAGAA+TGG - chr7.3:14297761-14297780 MS.gene23470:CDS 45.0%
AGAGTGTGAAGTCTCGAAGA+AGG - chr7.3:14297122-14297141 MS.gene23470:intron 45.0%
AGGATAGAGAAGAGGTGGAA+AGG - chr7.3:14296884-14296903 MS.gene23470:intron 45.0%
ATAAAGAGTGGGATCGAGAG+AGG - chr7.3:14297555-14297574 MS.gene23470:CDS 45.0%
CAACATAGACACCAACAGCT+TGG + chr7.3:14297215-14297234 None:intergenic 45.0%
GCCACAATGGCCAAAGAATA+TGG - chr7.3:14296019-14296038 MS.gene23470:CDS 45.0%
GGTGGTCAAGAACCTAACAT+TGG - chr7.3:14295605-14295624 MS.gene23470:intron 45.0%
TGCTTGTTCTCACTCCAACA+TGG + chr7.3:14295991-14296010 None:intergenic 45.0%
! AGGACGTGGATTTTGTGAAC+TGG + chr7.3:14295792-14295811 None:intergenic 45.0%
! CCGGTCTTTGAAAATCGACA+AGG - chr7.3:14297452-14297471 MS.gene23470:CDS 45.0%
! GTTGATTTAGAGGCTAACGG+TGG - chr7.3:14295587-14295606 MS.gene23470:intron 45.0%
! TTGATGGCATTCCAAGCTGT+TGG - chr7.3:14297201-14297220 MS.gene23470:CDS 45.0%
GGCACAAGCAACCTGTTCTT+AGG - chr7.3:14296926-14296945 MS.gene23470:intron 50.0%
TCGCATCCCACCTTCAAACA+AGG + chr7.3:14295812-14295831 None:intergenic 50.0%
TTGTTTGAAGGTGGGATGCG+AGG - chr7.3:14295811-14295830 MS.gene23470:CDS 50.0%
! CCACGTCCTTGTTTGAAGGT+GGG - chr7.3:14295803-14295822 MS.gene23470:CDS 50.0%
! TCCACGTCCTTGTTTGAAGG+TGG - chr7.3:14295802-14295821 MS.gene23470:CDS 50.0%
!! CGGCGTTTGGCTTTAGAATC+AGG - chr7.3:14296100-14296119 MS.gene23470:CDS 50.0%
!! GGTGATGGAGTCCTAAGAAC+AGG + chr7.3:14296940-14296959 None:intergenic 50.0%
CCCACCTTCAAACAAGGACG+TGG + chr7.3:14295806-14295825 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 14295497 14297893 14295497 ID=MS.gene23470
chr7.3 mRNA 14295497 14297893 14295497 ID=MS.gene23470.t1;Parent=MS.gene23470
chr7.3 exon 14297146 14297893 14297146 ID=MS.gene23470.t1.exon1;Parent=MS.gene23470.t1
chr7.3 CDS 14297146 14297893 14297146 ID=cds.MS.gene23470.t1;Parent=MS.gene23470.t1
chr7.3 exon 14295779 14296731 14295779 ID=MS.gene23470.t1.exon2;Parent=MS.gene23470.t1
chr7.3 CDS 14295779 14296731 14295779 ID=cds.MS.gene23470.t1;Parent=MS.gene23470.t1
chr7.3 exon 14295608 14295685 14295608 ID=MS.gene23470.t1.exon3;Parent=MS.gene23470.t1
chr7.3 CDS 14295608 14295685 14295608 ID=cds.MS.gene23470.t1;Parent=MS.gene23470.t1
chr7.3 exon 14295497 14295514 14295497 ID=MS.gene23470.t1.exon4;Parent=MS.gene23470.t1
chr7.3 CDS 14295497 14295514 14295497 ID=cds.MS.gene23470.t1;Parent=MS.gene23470.t1
Gene Sequence

>MS.gene23470

ATGGAAGTTGTTGATCGGAATGGAGAACATTCTATTGATGGGAATGAAGAGCAAGTTGTCAAGGAGATTGATGACAATGATTCATGTACCGTTGATTTAGAGGCTAACGGTGGTCAAGAACCTAACATTGGAATGGAATTTGATTCACAAGAAAATGCTTATTCATTCTACACTCATTATGCTAAGTCAGTTGGATTTGGGATATCAATTAAAAATAGTCGTCGTTCAAAGATTTCTAGAGAGTTTATTGATGTAAGTTATGCTTGCACAAGATACGGCAAGAAGCGAGAATCCAGTTCACAAAATCCACGTCCTTGTTTGAAGGTGGGATGCGAGGCTAGTTTACGTGTTAAAAGAATTTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAAGACCACAATCACGAACTTTTTCCAGCATATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAAAGCATTCTATTGAAACTTTGTACCATGTTGGAGTGAGAACAAGCAAAATTTTTGCCACAATGGCCAAAGAATATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATGTAAGAAACCATTTAGATAAAGATCGGCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGATTGTTTTATACTCATGCAAGAACAAAATCCAGGATTCTTTTATGCAATTGATATGGATGATGAGGGTCGCATGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGCTGTGCATTACTCTCAGATGAGACCAAGAACACTTTCATATGGTTGATGAAAATATGGTTTAGAGCAATGGGTGGAAAACCTCCAAATGCAATCATAACTGATCAAGATAGAGCAATGAAAGAGGCTATTAAAGAGGTATTTCCAAATTATCGACATCGATTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTAGTCATGTTTTAAGGGATGACGAAGACTTCATGAGATATCTCAACATATGCATATATAAGTCTTGGTCAAAACAACAATTTGAAGATAAATGGCATGAAATGGTGGAAAAATTTGATCTATTTGGAGATGATTGGATTCACTCTTTATATGAAGAACGTGAACATTGGGTTCCTGTTTACATGAATGATACATTTTTTGGTGGCTTATCAACAACTCAAAGATCAGAGAGCATTAATTCTTTTTTTGACAAATATGTATGTAAGAAAACTACATTAAAGGAATTTGTCGAAAAATATAAAGTTGCTTTACAGGATAGAGAAGAGGTGGAAAGGCAAGCTGATTTTAAGACATGGCACAAGCAACCTGTTCTTAGGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATATATACACATGAAATCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCGTATTGTGAAAGAACATAATGATAATCTTACTGCCACTTTTACAATTTTCGACTTTCATAGAAATGACGAGTTTATTGTAGAGTGTGAAGTCTCGAAGAAGGAAATATCGTGTCTGTGTCGCTTTTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCATTCCAAGCTGTTGGTGTCTATGTTGTCCCATCACACTATATTTTAAGAAGATGGACCAAGGATGTTAGAAGCAAGCATCATACAAGGATAACGAAAGAAGATGTGTGTTCTAGTAAGGAGAGATATGATTCATTATATCAAAAGGCTATTGAATTTCTCGAAGAAGGATCACTAAGTTTTGAGAGTTACAATTTGGCTTGCCATGCACTTGAAGAAACTTTGAAACAGTGTGCAACTATCAACCGGTCTTTGAAAATCGACAAGGAAAACGTTGGTCAGAGCAGTTTACGTGTGAAGCTAGTGCGTGATCCTAAAAGAGCAAATACAAAAGGGGCTCCAAGAAGAATAAAGAGTGGGATCGAGAGAGGTCGTAAGAGAACATCTAGTTGTAAAGTAAAAAAGGTTAGAAGATTTTAACTTGATCAAAATTTGTATAATGTTTTTTTTTTATTTTAGCATTATTTCTCATTGTTATGTATTTGTTGTGATTTTAAGTCTGCTATTGTCCAAAGAGAAGCAGTAAATACCTCAAATGTTCTCAATGGTGAAATAACAGCTGCATTGCCAAGAATGGTATGACACATTATTCTTAGGTGATTTAATATTAAGTTAGTAGATACATTTTGAGTTTTCAACTAATTGTCTTTTGTTTTCTTATTTTCACAGGAAAGTCATCATGGTTGA
Protein sequence

>MS.gene23470.t1

MEVVDRNGEHSIDGNEEQVVKEIDDNDSCTVDLEANGGQEPNIGMEFDSQENAYSFYTHYAKSVGFGISIKNSRRSKISREFIDVSYACTRYGKKRESSSQNPRPCLKVGCEASLRVKRICDGKWIVHSFIKDHNHELFPAYAHYFPCHRGINKAQKHSIETLYHVGVRTSKIFATMAKEYGGYENIGCLEKDVRNHLDKDRRLALESGDANAMLDCFILMQEQNPGFFYAIDMDDEGRMKNVFWVDAKDKWHEMVEKFDLFGDDWIHSLYEEREHWVPVYMNDTFFGGLSTTQRSESINSFFDKYVCKKTTLKEFVEKYKVALQDREEVERQADFKTWHKQPVLRTPSPFEKQMSMIYTHEIFKKFQVEVLGLSGCRIVKEHNDNLTATFTIFDFHRNDEFIVECEVSKKEISCLCRFFEYNGYLCRHSLMAFQAVGVYVVPSHYILRRWTKDVRSKHHTRITKEDVCSSKERYDSLYQKAIEFLEEGSLSFESYNLACHALEETLKQCATINRSLKIDKENVGQSSLRVKLVRDPKRANTKGAPRRIKSGIERGRKRTSSCKVKKSAIVQREAVNTSNVLNGEITAALPRMESHHG