Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23485.t1 | KEH26852.1 | 49.4 | 83 | 42 | 0 | 174 | 256 | 64 | 146 | 5.50E-15 | 91.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23485.t1 | A0A072UB72 | 49.4 | 83 | 42 | 0 | 174 | 256 | 64 | 146 | 4.0e-15 | 91.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23485.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23485.t1 | MTR_6g477950 | 49.398 | 83 | 42 | 0 | 174 | 256 | 64 | 146 | 5.15e-20 | 87.8 |
| MS.gene23485.t1 | MTR_3g082920 | 80.851 | 47 | 9 | 0 | 114 | 160 | 386 | 432 | 6.57e-18 | 82.8 |
| MS.gene23485.t1 | MTR_5g071410 | 39.423 | 104 | 63 | 0 | 153 | 256 | 167 | 270 | 2.00e-17 | 80.1 |
| MS.gene23485.t1 | MTR_8g069780 | 36.264 | 91 | 58 | 0 | 164 | 254 | 65 | 155 | 1.46e-16 | 75.1 |
| MS.gene23485.t1 | MTR_7g117585 | 37.500 | 104 | 65 | 0 | 153 | 256 | 44 | 147 | 1.94e-16 | 74.7 |
| MS.gene23485.t1 | MTR_0131s0030 | 31.405 | 121 | 71 | 3 | 125 | 245 | 41 | 149 | 6.15e-14 | 68.2 |
| MS.gene23485.t1 | MTR_3g117130 | 41.250 | 80 | 47 | 0 | 175 | 254 | 199 | 278 | 9.99e-14 | 70.1 |
| MS.gene23485.t1 | MTR_2g437520 | 37.349 | 83 | 49 | 1 | 175 | 254 | 121 | 203 | 3.05e-12 | 64.3 |
| MS.gene23485.t1 | MTR_2g012700 | 25.424 | 118 | 86 | 1 | 137 | 254 | 4 | 119 | 4.98e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGCTTATTACTTCTAAC+AGG | 0.255633 | 7.3:-14480711 | MS.gene23485:CDS |
| GTGCTCAGTGGAGTCTTTGC+AGG | 0.296463 | 7.3:-14482234 | MS.gene23485:intron |
| GTGATGTTGTGTTGTGTATC+TGG | 0.317726 | 7.3:+14480769 | None:intergenic |
| CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 7.3:-14483326 | MS.gene23485:CDS |
| CCTAGTTTCTAAGATTGTTT+CGG | 0.365478 | 7.3:+14480563 | None:intergenic |
| GCTTTGTCCCGGTAAATAGT+AGG | 0.385439 | 7.3:+14483318 | None:intergenic |
| TTTGCGAAGTGATACAAATC+AGG | 0.387377 | 7.3:+14480956 | None:intergenic |
| GTTAAGGCACCAACTATTGC+CGG | 0.418037 | 7.3:-14483353 | MS.gene23485:CDS |
| GCAGCTTGTCGCCCTCTTGT+CGG | 0.453619 | 7.3:+14482299 | None:intergenic |
| TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 7.3:+14483334 | None:intergenic |
| CCGAAACAATCTTAGAAACT+AGG | 0.460846 | 7.3:-14480563 | None:intergenic |
| ACAACACAACATCACATTAG+TGG | 0.470107 | 7.3:-14480761 | MS.gene23485:CDS |
| TAGATTGTTCTTTGAACTAG+AGG | 0.478401 | 7.3:-14480617 | MS.gene23485:CDS |
| TGCAATTGAAAGGATGGTTA+AGG | 0.486066 | 7.3:-14483369 | MS.gene23485:CDS |
| CAGCATTGCTCGAGTTATGC+CGG | 0.494015 | 7.3:-14483406 | MS.gene23485:CDS |
| CTTTGTCCCGGTAAATAGTA+GGG | 0.497495 | 7.3:+14483319 | None:intergenic |
| TTCAAACCCTACTATTTACC+GGG | 0.497622 | 7.3:-14483325 | MS.gene23485:CDS |
| TGAAGTAATCCGGCAATAGT+TGG | 0.499205 | 7.3:+14483344 | None:intergenic |
| TGTATCTGGAAGCACGTTGA+TGG | 0.501996 | 7.3:+14480783 | None:intergenic |
| TCAAAACAAAACTATTAAGC+AGG | 0.511923 | 7.3:-14481029 | MS.gene23485:CDS |
| GTAAGGAGTGGCGACGGGTA+AGG | 0.512226 | 7.3:-14483441 | MS.gene23485:CDS |
| CTCGAGTAAGGAGTGGCGAC+GGG | 0.529667 | 7.3:-14483446 | MS.gene23485:CDS |
| TTCAGCTGCAATTGAAAGGA+TGG | 0.529769 | 7.3:-14483375 | MS.gene23485:CDS |
| CAGACTGACATCTCAGATGA+TGG | 0.535520 | 7.3:-14480909 | MS.gene23485:intron |
| ATCGATTGTTTATCCATACC+AGG | 0.542949 | 7.3:-14481692 | MS.gene23485:intron |
| AACACCGCATTGCTCGAGTA+AGG | 0.545237 | 7.3:-14483458 | MS.gene23485:CDS |
| ATCTCAACAAATAATGACTT+CGG | 0.550533 | 7.3:+14480589 | None:intergenic |
| ATTCTATTGAGTACCTGGTA+TGG | 0.552087 | 7.3:+14481679 | None:intergenic |
| CAAGCTTATTACTTCTAACA+GGG | 0.557318 | 7.3:-14480710 | MS.gene23485:CDS |
| ATGTCTAGATCGCTTTGTCC+CGG | 0.562722 | 7.3:+14483307 | None:intergenic |
| ACAACATCACATTAGTGGAA+TGG | 0.566542 | 7.3:-14480756 | MS.gene23485:CDS |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.568659 | 7.3:-14483379 | MS.gene23485:CDS |
| CTCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 7.3:-14483398 | MS.gene23485:CDS |
| GCTCGAGTAAGGAGTGGCGA+CGG | 0.594342 | 7.3:-14483447 | MS.gene23485:CDS |
| AAAGACAGCAAATTATGTGA+AGG | 0.596837 | 7.3:-14480643 | MS.gene23485:CDS |
| AAGCGATCTAGACATATTCG+CGG | 0.603260 | 7.3:-14483299 | MS.gene23485:CDS |
| CGCATTGCTCGAGTAAGGAG+TGG | 0.630800 | 7.3:-14483453 | MS.gene23485:CDS |
| TCAACAAATAATGACTTCGG+AGG | 0.642968 | 7.3:+14480592 | None:intergenic |
| AGGGACAATCACCGACAAGA+GGG | 0.643933 | 7.3:-14482310 | MS.gene23485:CDS |
| TAGGGACAATCACCGACAAG+AGG | 0.646386 | 7.3:-14482311 | MS.gene23485:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 7.3:+14483387 | None:intergenic |
| TTGCTCGAGTTATGCCGGAG+TGG | 0.674659 | 7.3:-14483401 | MS.gene23485:CDS |
| CAATAGGTTCAAGACAGCTG+TGG | 0.678754 | 7.3:-14481074 | MS.gene23485:intron |
| TTGATAGGAATGATGCGTTG+TGG | 0.684688 | 7.3:-14483481 | None:intergenic |
| AAGCTTATTACTTCTAACAG+GGG | 0.718500 | 7.3:-14480709 | MS.gene23485:CDS |
| CACTCCTTACTCGAGCAATG+CGG | 0.720468 | 7.3:+14483454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATATAACAATAAAAAAA+GGG | + | chr7.3:14481442-14481461 | None:intergenic | 10.0% |
| !! | CTTAATATTCATAAAAAAAA+AGG | + | chr7.3:14481501-14481520 | None:intergenic | 10.0% |
| !! | TAATATTTATATGATATGAA+TGG | - | chr7.3:14482587-14482606 | MS.gene23485:intron | 10.0% |
| !! | TCTAATATAACAATAAAAAA+AGG | + | chr7.3:14481443-14481462 | None:intergenic | 10.0% |
| !!! | TAATGTATTTTTCAAAAATT+TGG | + | chr7.3:14481957-14481976 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAATAATTCAACT+TGG | - | chr7.3:14482069-14482088 | MS.gene23485:intron | 10.0% |
| !! | ATTAAGATGAAATTACTAAT+TGG | + | chr7.3:14482097-14482116 | None:intergenic | 15.0% |
| !! | CATATCAAAAAAATGTTAAT+TGG | - | chr7.3:14480822-14480841 | MS.gene23485:intron | 15.0% |
| !! | TAATAATATGAATCAGTTAA+TGG | + | chr7.3:14483202-14483221 | None:intergenic | 15.0% |
| !! | TTCTTTCAAAAATGATATAA+AGG | + | chr7.3:14481390-14481409 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATTTGCTCTAA+AGG | + | chr7.3:14482057-14482076 | None:intergenic | 15.0% |
| !! | AAAAGAAAATTGTCAAAGAA+TGG | + | chr7.3:14481349-14481368 | None:intergenic | 20.0% |
| !! | ATGAAATAAGTATAAGAGTA+AGG | - | chr7.3:14482832-14482851 | MS.gene23485:intron | 20.0% |
| !! | GTTAACAACTTAATATCTAA+TGG | - | chr7.3:14481129-14481148 | MS.gene23485:intron | 20.0% |
| !! | TACTTGAATCTTGAAATAAA+GGG | + | chr7.3:14481290-14481309 | None:intergenic | 20.0% |
| !! | TATATGAGATATCATATACT+TGG | - | chr7.3:14481154-14481173 | MS.gene23485:intron | 20.0% |
| !! | TTACTTGAATCTTGAAATAA+AGG | + | chr7.3:14481291-14481310 | None:intergenic | 20.0% |
| !! | TTCAAAAATGATATAAAGGA+TGG | + | chr7.3:14481386-14481405 | None:intergenic | 20.0% |
| !! | TTTGTAACAGTATTTATTAG+CGG | - | chr7.3:14481177-14481196 | MS.gene23485:intron | 20.0% |
| !!! | GTAAATTTTGATGTTCAAAA+TGG | - | chr7.3:14481307-14481326 | MS.gene23485:intron | 20.0% |
| !!! | TCTCATGCAATTTTTTTTTA+TGG | + | chr7.3:14481230-14481249 | None:intergenic | 20.0% |
| !!! | TGACAATTTTCTTTTATTCT+AGG | - | chr7.3:14481354-14481373 | MS.gene23485:intron | 20.0% |
| ! | AAAATGCAAAGTACACAATT+TGG | - | chr7.3:14481017-14481036 | MS.gene23485:CDS | 25.0% |
| ! | AAAGTTACATTCGAATTTAC+CGG | - | chr7.3:14482933-14482952 | MS.gene23485:intron | 25.0% |
| ! | AATTTACCGGTAAATTCAAT+AGG | - | chr7.3:14482946-14482965 | MS.gene23485:intron | 25.0% |
| ! | ACTTGAATCTTGAAATAAAG+GGG | + | chr7.3:14481289-14481308 | None:intergenic | 25.0% |
| ! | AGGTAAACAAAAAATGATGT+TGG | - | chr7.3:14481051-14481070 | MS.gene23485:CDS | 25.0% |
| ! | ATAAGTATAAGAGTAAGGTT+CGG | - | chr7.3:14482837-14482856 | MS.gene23485:intron | 25.0% |
| ! | ATCTCAACAAATAATGACTT+CGG | + | chr7.3:14483450-14483469 | None:intergenic | 25.0% |
| ! | GAAAAAATGCAAAGTACAAT+TGG | - | chr7.3:14480762-14480781 | MS.gene23485:CDS | 25.0% |
| ! | GAAAAATTATCATGTGTTTG+AGG | - | chr7.3:14482409-14482428 | MS.gene23485:intron | 25.0% |
| ! | GAATATAAAAGTAGTAGTGT+AGG | + | chr7.3:14483162-14483181 | None:intergenic | 25.0% |
| ! | GATGTAGTTAGTTGATTATA+AGG | + | chr7.3:14480951-14480970 | None:intergenic | 25.0% |
| ! | GTGTACTTATACAAGATTAT+TGG | - | chr7.3:14482625-14482644 | MS.gene23485:intron | 25.0% |
| ! | TAATGAAAAATATCTAGGAG+AGG | - | chr7.3:14483353-14483372 | MS.gene23485:CDS | 25.0% |
| ! | TCAAAACAAAACTATTAAGC+AGG | - | chr7.3:14483007-14483026 | MS.gene23485:intron | 25.0% |
| ! | TCTCACAATACAATTTATGA+AGG | - | chr7.3:14481892-14481911 | MS.gene23485:intron | 25.0% |
| ! | TTTCTTTGTAACACTCTTTA+AGG | + | chr7.3:14481254-14481273 | None:intergenic | 25.0% |
| !! | ACAATTTGGACTGTTATTTA+AGG | - | chr7.3:14481031-14481050 | MS.gene23485:CDS | 25.0% |
| !! | ATTTGTGCAATATTCGTTTT+TGG | - | chr7.3:14481779-14481798 | MS.gene23485:intron | 25.0% |
| !! | TCTCCTAGATATTTTTCATT+AGG | + | chr7.3:14483354-14483373 | None:intergenic | 25.0% |
| !! | TCTTTTCATGAATCAAAACT+TGG | - | chr7.3:14482157-14482176 | MS.gene23485:intron | 25.0% |
| !!! | ACGTTGATGGAAATTTTATT+GGG | + | chr7.3:14483243-14483262 | None:intergenic | 25.0% |
| !!! | ATAGTTTTAAAAATGAGTGC+AGG | - | chr7.3:14480795-14480814 | MS.gene23485:CDS | 25.0% |
| !!! | ATATTTTAGAACATAACCCT+TGG | + | chr7.3:14482703-14482722 | None:intergenic | 25.0% |
| !!! | TAATTATTACGTTGTTTTCC+TGG | - | chr7.3:14482113-14482132 | MS.gene23485:intron | 25.0% |
| !!! | TAGTTTTAAAAATGAGTGCA+GGG | - | chr7.3:14480796-14480815 | MS.gene23485:CDS | 25.0% |
| !!! | TCCTTAATTTGCTCATTTTT+GGG | - | chr7.3:14482218-14482237 | MS.gene23485:intron | 25.0% |
| !!! | TTCCTTAATTTGCTCATTTT+TGG | - | chr7.3:14482217-14482236 | MS.gene23485:intron | 25.0% |
| !!! | TTTGTGCAATATTCGTTTTT+GGG | - | chr7.3:14481780-14481799 | MS.gene23485:intron | 25.0% |
| AAAAATATCTAGGAGAGGAT+TGG | - | chr7.3:14483358-14483377 | MS.gene23485:CDS | 30.0% | |
| AAAGACAGCAAATTATGTGA+AGG | - | chr7.3:14483393-14483412 | MS.gene23485:CDS | 30.0% | |
| AACAAGGCTAAAAAATCCTT+GGG | - | chr7.3:14481681-14481700 | MS.gene23485:intron | 30.0% | |
| AACCAAAATTTCATCACATC+TGG | - | chr7.3:14482870-14482889 | MS.gene23485:intron | 30.0% | |
| AAGAAAGAGACAAAAACTTC+TGG | + | chr7.3:14482307-14482326 | None:intergenic | 30.0% | |
| AAGCTTATTACTTCTAACAG+GGG | - | chr7.3:14483327-14483346 | MS.gene23485:CDS | 30.0% | |
| AAGGAGAGATGTTCAAATTA+CGG | + | chr7.3:14482038-14482057 | None:intergenic | 30.0% | |
| AATCTTGAAATAAAGGGGAA+TGG | + | chr7.3:14481284-14481303 | None:intergenic | 30.0% | |
| AATTCGAATGTAACTTTCGT+TGG | + | chr7.3:14482930-14482949 | None:intergenic | 30.0% | |
| ACCCAAAAATGAGCAAATTA+AGG | + | chr7.3:14482222-14482241 | None:intergenic | 30.0% | |
| AGTAGTGTTCAAAGAATTCA+TGG | + | chr7.3:14482767-14482786 | None:intergenic | 30.0% | |
| ATACATTCTACTTCTTTCCA+AGG | - | chr7.3:14482683-14482702 | MS.gene23485:intron | 30.0% | |
| ATCAAATAACCATGCGTTTA+AGG | - | chr7.3:14481415-14481434 | MS.gene23485:intron | 30.0% | |
| CAAGCTTATTACTTCTAACA+GGG | - | chr7.3:14483326-14483345 | MS.gene23485:CDS | 30.0% | |
| CTTGAACCTATTGAATTTAC+CGG | + | chr7.3:14482955-14482974 | None:intergenic | 30.0% | |
| GGTCCTAATGAAAAATATCT+AGG | - | chr7.3:14483348-14483367 | MS.gene23485:CDS | 30.0% | |
| TAAAGAAACATCCTTATGCA+TGG | - | chr7.3:14482796-14482815 | MS.gene23485:intron | 30.0% | |
| TAACAAGGCTAAAAAATCCT+TGG | - | chr7.3:14481680-14481699 | MS.gene23485:intron | 30.0% | |
| TACATTCTACTTCTTTCCAA+GGG | - | chr7.3:14482684-14482703 | MS.gene23485:intron | 30.0% | |
| TAGATTGTTCTTTGAACTAG+AGG | - | chr7.3:14483419-14483438 | MS.gene23485:CDS | 30.0% | |
| TCATGAATCAAAACTTGGTT+AGG | - | chr7.3:14482162-14482181 | MS.gene23485:intron | 30.0% | |
| TTCACATTCTAGCAAATCAA+GGG | + | chr7.3:14481553-14481572 | None:intergenic | 30.0% | |
| TTGTCATATATAAACAGAGC+AGG | + | chr7.3:14482506-14482525 | None:intergenic | 30.0% | |
| TTTCAAAAATTTGGCTGTGA+AGG | + | chr7.3:14481948-14481967 | None:intergenic | 30.0% | |
| TTTCACATTCTAGCAAATCA+AGG | + | chr7.3:14481554-14481573 | None:intergenic | 30.0% | |
| TTTGTATCACTTCGCAAAAA+AGG | - | chr7.3:14483085-14483104 | MS.gene23485:intron | 30.0% | |
| ! | AAGGAGAAATGTGCAAATTT+TGG | + | chr7.3:14481929-14481948 | None:intergenic | 30.0% |
| ! | CTTGCATTCATATTGTTTTC+GGG | + | chr7.3:14483310-14483329 | None:intergenic | 30.0% |
| ! | GCTTGCATTCATATTGTTTT+CGG | + | chr7.3:14483311-14483330 | None:intergenic | 30.0% |
| ! | GTTTTTGTCTCTTTCTTTTC+AGG | - | chr7.3:14482310-14482329 | MS.gene23485:CDS | 30.0% |
| ! | TACCAGATGTGATGAAATTT+TGG | + | chr7.3:14482875-14482894 | None:intergenic | 30.0% |
| ! | TATATTTTGTTCATGAGACC+AGG | + | chr7.3:14482134-14482153 | None:intergenic | 30.0% |
| !! | CACGTTGATGGAAATTTTAT+TGG | + | chr7.3:14483244-14483263 | None:intergenic | 30.0% |
| !! | CGTTGATGGAAATTTTATTG+GGG | + | chr7.3:14483242-14483261 | None:intergenic | 30.0% |
| !!! | TGAGCTATGGTTTTGTATTT+CGG | - | chr7.3:14481838-14481857 | MS.gene23485:intron | 30.0% |
| AAAAAAGGTCACTAAGCCTT+GGG | - | chr7.3:14483100-14483119 | MS.gene23485:intron | 35.0% | |
| ACAAAGATGTATGATGACCA+AGG | + | chr7.3:14481098-14481117 | None:intergenic | 35.0% | |
| ACAACACAACATCACATTAG+TGG | - | chr7.3:14483275-14483294 | MS.gene23485:intron | 35.0% | |
| ACAACATCACATTAGTGGAA+TGG | - | chr7.3:14483280-14483299 | MS.gene23485:intron | 35.0% | |
| AGGGACATATAGAAAAACCT+TGG | - | chr7.3:14481078-14481097 | MS.gene23485:intron | 35.0% | |
| ATCGATTGTTTATCCATACC+AGG | - | chr7.3:14482344-14482363 | MS.gene23485:intron | 35.0% | |
| ATGTTGCAACAACATTTCAG+TGG | - | chr7.3:14482898-14482917 | MS.gene23485:intron | 35.0% | |
| ATTCTATTGAGTACCTGGTA+TGG | + | chr7.3:14482360-14482379 | None:intergenic | 35.0% | |
| CAACTACAAGAAAGACAATG+TGG | - | chr7.3:14481601-14481620 | MS.gene23485:intron | 35.0% | |
| CTTCAAACCCTACTATTTAC+CGG | - | chr7.3:14480710-14480729 | MS.gene23485:CDS | 35.0% | |
| CTTCGTAAATTTGAGAACGA+AGG | + | chr7.3:14482003-14482022 | None:intergenic | 35.0% | |
| GCAAGCTTATTACTTCTAAC+AGG | - | chr7.3:14483325-14483344 | MS.gene23485:CDS | 35.0% | |
| TAGAGATTCTATTGAGTACC+TGG | + | chr7.3:14482365-14482384 | None:intergenic | 35.0% | |
| TCAACAAATAATGACTTCGG+AGG | + | chr7.3:14483447-14483466 | None:intergenic | 35.0% | |
| TGCAATTGAAAGGATGGTTA+AGG | - | chr7.3:14480667-14480686 | MS.gene23485:CDS | 35.0% | |
| TTCAAACCCTACTATTTACC+GGG | - | chr7.3:14480711-14480730 | MS.gene23485:CDS | 35.0% | |
| TTTGCGAAGTGATACAAATC+AGG | + | chr7.3:14483083-14483102 | None:intergenic | 35.0% | |
| ! | AAAAAATGATGTTGGCTGCA+GGG | - | chr7.3:14481059-14481078 | MS.gene23485:CDS | 35.0% |
| ! | CATCAATATGCAAGAGTACA+TGG | + | chr7.3:14480918-14480937 | None:intergenic | 35.0% |
| ! | TAGTAGGGTTTGAAGTAATC+CGG | + | chr7.3:14480705-14480724 | None:intergenic | 35.0% |
| !! | AAGTTGGTTCCAGTTTGTTA+GGG | - | chr7.3:14481707-14481726 | MS.gene23485:CDS | 35.0% |
| AAAAAGGGTCCTTAAACGCA+TGG | + | chr7.3:14481427-14481446 | None:intergenic | 40.0% | |
| AAAAATCCTTGGGAGGAAGT+TGG | - | chr7.3:14481691-14481710 | MS.gene23485:intron | 40.0% | |
| AAGCGATCTAGACATATTCG+CGG | - | chr7.3:14480737-14480756 | MS.gene23485:CDS | 40.0% | |
| AAGGCTAAAAAATCCTTGGG+AGG | - | chr7.3:14481684-14481703 | MS.gene23485:intron | 40.0% | |
| CAAAAAAGGTCACTAAGCCT+TGG | - | chr7.3:14483099-14483118 | MS.gene23485:intron | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+GGG | + | chr7.3:14480720-14480739 | None:intergenic | 40.0% | |
| GTGATGTTGTGTTGTGTATC+TGG | + | chr7.3:14483270-14483289 | None:intergenic | 40.0% | |
| TCATGTATGAGCCATGCATA+AGG | + | chr7.3:14482810-14482829 | None:intergenic | 40.0% | |
| TGAAGTAATCCGGCAATAGT+TGG | + | chr7.3:14480695-14480714 | None:intergenic | 40.0% | |
| TTCAGCTGCAATTGAAAGGA+TGG | - | chr7.3:14480661-14480680 | MS.gene23485:CDS | 40.0% | |
| ! | CAAAAAATGATGTTGGCTGC+AGG | - | chr7.3:14481058-14481077 | MS.gene23485:CDS | 40.0% |
| ! | GAAGTTGGTTCCAGTTTGTT+AGG | - | chr7.3:14481706-14481725 | MS.gene23485:CDS | 40.0% |
| !! | TATTGGGGAAGTGCTAAAGA+GGG | + | chr7.3:14483227-14483246 | None:intergenic | 40.0% |
| !! | TTATTGGGGAAGTGCTAAAG+AGG | + | chr7.3:14483228-14483247 | None:intergenic | 40.0% |
| !!! | GCTATGGTTTTGTATTTCGG+TGG | - | chr7.3:14481841-14481860 | MS.gene23485:intron | 40.0% |
| ATGTCTAGATCGCTTTGTCC+CGG | + | chr7.3:14480732-14480751 | None:intergenic | 45.0% | |
| CAATAGGTTCAAGACAGCTG+TGG | - | chr7.3:14482962-14482981 | MS.gene23485:intron | 45.0% | |
| CAGACTGACATCTCAGATGA+TGG | - | chr7.3:14483127-14483146 | MS.gene23485:intron | 45.0% | |
| CATTACCACTGAGCGTAACA+AGG | - | chr7.3:14481665-14481684 | MS.gene23485:intron | 45.0% | |
| GAGGTTCAGCTGCAATTGAA+AGG | - | chr7.3:14480657-14480676 | MS.gene23485:CDS | 45.0% | |
| GCTTTGTCCCGGTAAATAGT+AGG | + | chr7.3:14480721-14480740 | None:intergenic | 45.0% | |
| GGTGATTGTCCCTAACAAAC+TGG | + | chr7.3:14481719-14481738 | None:intergenic | 45.0% | |
| TCTGTGGATAGTCTGAGCTA+TGG | - | chr7.3:14481825-14481844 | MS.gene23485:intron | 45.0% | |
| TGGTTGCTTGATGTGCTTAC+CGG | - | chr7.3:14481621-14481640 | MS.gene23485:intron | 45.0% | |
| ! | GATGTCAGTCTGTTTTCCCA+AGG | + | chr7.3:14483119-14483138 | None:intergenic | 45.0% |
| ! | GCGGCAATTGTATTTCTGAC+CGG | + | chr7.3:14481643-14481662 | None:intergenic | 45.0% |
| ! | GTTAAGGCACCAACTATTGC+CGG | - | chr7.3:14480683-14480702 | MS.gene23485:CDS | 45.0% |
| ! | TGTATCTGGAAGCACGTTGA+TGG | + | chr7.3:14483256-14483275 | None:intergenic | 45.0% |
| ! | TGTTACGCTCAGTGGTAATG+AGG | + | chr7.3:14481665-14481684 | None:intergenic | 45.0% |
| !! | TTTAGCCTTGTTACGCTCAG+TGG | + | chr7.3:14481673-14481692 | None:intergenic | 45.0% |
| !!! | ATTCGTTTTTGGGTGCTCAG+TGG | - | chr7.3:14481790-14481809 | MS.gene23485:intron | 45.0% |
| AACACCGCATTGCTCGAGTA+AGG | - | chr7.3:14480578-14480597 | MS.gene23485:CDS | 50.0% | |
| AGGGACAATCACCGACAAGA+GGG | - | chr7.3:14481726-14481745 | MS.gene23485:intron | 50.0% | |
| CACTCCTTACTCGAGCAATG+CGG | + | chr7.3:14480585-14480604 | None:intergenic | 50.0% | |
| CAGCATTGCTCGAGTTATGC+CGG | - | chr7.3:14480630-14480649 | MS.gene23485:CDS | 50.0% | |
| CGAAGGTTGCATGCTTTGCA+CGG | + | chr7.3:14481986-14482005 | None:intergenic | 50.0% | |
| GAAGGTTGCATGCTTTGCAC+GGG | + | chr7.3:14481985-14482004 | None:intergenic | 50.0% | |
| TAGGGACAATCACCGACAAG+AGG | - | chr7.3:14481725-14481744 | MS.gene23485:intron | 50.0% | |
| ! | TACGCTCAGTGGTAATGAGG+CGG | + | chr7.3:14481662-14481681 | None:intergenic | 50.0% |
| CGCATTGCTCGAGTAAGGAG+TGG | - | chr7.3:14480583-14480602 | MS.gene23485:CDS | 55.0% | |
| CTGGAACCAACTTCCTCCCA+AGG | + | chr7.3:14481700-14481719 | None:intergenic | 55.0% | |
| GTGCTCAGTGGAGTCTTTGC+AGG | - | chr7.3:14481802-14481821 | MS.gene23485:intron | 55.0% | |
| GTGGAGTCTTTGCAGGTCTG+TGG | - | chr7.3:14481809-14481828 | MS.gene23485:intron | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | + | chr7.3:14480652-14480671 | None:intergenic | 55.0% | |
| TTGCTCGAGTTATGCCGGAG+TGG | - | chr7.3:14480635-14480654 | MS.gene23485:CDS | 55.0% | |
| CTCGAGTAAGGAGTGGCGAC+GGG | - | chr7.3:14480590-14480609 | MS.gene23485:CDS | 60.0% | |
| CTCGAGTTATGCCGGAGTGG+AGG | - | chr7.3:14480638-14480657 | MS.gene23485:CDS | 60.0% | |
| GCAGCTTGTCGCCCTCTTGT+CGG | + | chr7.3:14481740-14481759 | None:intergenic | 60.0% | |
| GCTCGAGTAAGGAGTGGCGA+CGG | - | chr7.3:14480589-14480608 | MS.gene23485:CDS | 60.0% | |
| GTAAGGAGTGGCGACGGGTA+AGG | - | chr7.3:14480595-14480614 | MS.gene23485:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14480564 | 14483494 | 14480564 | ID=MS.gene23485 |
| chr7.3 | mRNA | 14480564 | 14483494 | 14480564 | ID=MS.gene23485.t1;Parent=MS.gene23485 |
| chr7.3 | exon | 14483284 | 14483494 | 14483284 | ID=MS.gene23485.t1.exon1;Parent=MS.gene23485.t1 |
| chr7.3 | CDS | 14483284 | 14483494 | 14483284 | ID=cds.MS.gene23485.t1;Parent=MS.gene23485.t1 |
| chr7.3 | exon | 14482235 | 14482330 | 14482235 | ID=MS.gene23485.t1.exon2;Parent=MS.gene23485.t1 |
| chr7.3 | CDS | 14482235 | 14482330 | 14482235 | ID=cds.MS.gene23485.t1;Parent=MS.gene23485.t1 |
| chr7.3 | exon | 14481693 | 14481726 | 14481693 | ID=MS.gene23485.t1.exon3;Parent=MS.gene23485.t1 |
| chr7.3 | CDS | 14481693 | 14481726 | 14481693 | ID=cds.MS.gene23485.t1;Parent=MS.gene23485.t1 |
| chr7.3 | exon | 14480910 | 14481090 | 14480910 | ID=MS.gene23485.t1.exon4;Parent=MS.gene23485.t1 |
| chr7.3 | CDS | 14480910 | 14481090 | 14480910 | ID=cds.MS.gene23485.t1;Parent=MS.gene23485.t1 |
| chr7.3 | exon | 14480564 | 14480824 | 14480564 | ID=MS.gene23485.t1.exon5;Parent=MS.gene23485.t1 |
| chr7.3 | CDS | 14480564 | 14480824 | 14480564 | ID=cds.MS.gene23485.t1;Parent=MS.gene23485.t1 |
| Gene Sequence |
| Protein sequence |
