AlfalfaGEDB | MS.gene23536

M. sativa cultivar XinJiangDaYe / MS.gene23536

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23536.t1	XP_024627195.1	95.1	142	7	0	1	142	1	142	3.50E-48	201.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23536.t1	Q9SLD4	52.7	74	32	2	1	71	1	74	6.0e-12	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23536.t1	A0A396H512	95.1	142	7	0	1	142	1	142	2.6e-48	201.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23536.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23536.t1	MTR_7g100100	68.531	143	32	3	1	142	3	133	1.74e-60	184
MS.gene23536.t1	MTR_1g067660	61.429	140	46	4	5	142	2	135	3.70e-52	163
MS.gene23536.t1	MTR_1g067650	58.503	147	46	6	1	142	2	138	4.15e-45	145
MS.gene23536.t1	MTR_1g067640	57.823	147	47	6	1	142	1	137	2.21e-44	143
MS.gene23536.t1	MTR_7g023560	52.586	116	49	3	1	116	1	110	1.46e-32	114
MS.gene23536.t1	MTR_1g115345	45.600	125	52	4	1	115	1	119	1.80e-27	101
MS.gene23536.t1	MTR_2g096540	50.459	109	38	3	9	116	4	97	1.29e-25	94.7
MS.gene23536.t1	MTR_1g062780	40.136	147	47	3	14	119	80	226	2.99e-23	92.4
MS.gene23536.t1	MTR_1g090703	36.810	163	48	5	11	118	98	260	2.30e-22	90.9
MS.gene23536.t1	MTR_2g084315	36.000	175	50	6	6	118	62	236	3.48e-22	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23536.t1	AT2G37430	46.575	146	72	4	1	142	1	144	1.42e-33	116
MS.gene23536.t1	AT3G53600	42.384	151	70	4	1	142	1	143	8.44e-29	103
MS.gene23536.t1	AT2G28710	49.138	116	41	6	1	114	1	100	4.95e-25	94.0
MS.gene23536.t1	AT3G46090	47.154	123	55	3	1	123	2	114	5.90e-25	94.0
MS.gene23536.t1	AT2G28200	37.500	152	56	5	11	125	73	222	8.89e-24	93.6
MS.gene23536.t1	AT3G46080	43.548	124	59	3	1	124	2	114	5.50e-23	89.0
MS.gene23536.t1	AT5G59820	45.614	114	44	4	6	115	6	105	8.24e-23	88.2
MS.gene23536.t1	AT5G03510	40.940	149	46	5	11	117	69	217	1.04e-21	88.2
MS.gene23536.t1	AT5G04390	34.969	163	54	5	8	118	93	255	1.05e-20	86.7
MS.gene23536.t1	AT3G10470	45.192	104	26	3	44	116	182	285	3.46e-19	82.8

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Find 23 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGATTGAATAGTGCAA+GGG	0.553931	7.4:+10100540	MS.gene23536:CDS
AAGAGACAAAGAGATATAGA+AGG	0.447668	7.4:+10100139	MS.gene23536:CDS
AATTCTACATCTTTGAGCTT+AGG	0.417627	7.4:+10100370	MS.gene23536:CDS
AGGATTAGAAAGCATAGATT+TGG	0.368671	7.4:+10100159	MS.gene23536:CDS
ATAAAAGATCAAAGCTAGAA+GGG	0.549441	7.4:+10100332	MS.gene23536:CDS
ATGCATGAATGTTCCATTTG+TGG	0.513081	7.4:+10100406	MS.gene23536:CDS
ATTGTTATGTTGTTGATGTT+GGG	0.351718	7.4:-10100209	None:intergenic
CAACGAAGAGGTTTCTCCAA+TGG	0.523977	7.4:+10100489	MS.gene23536:CDS
CATAAAAGATCAAAGCTAGA+AGG	0.385523	7.4:+10100331	MS.gene23536:CDS
CATTGGGTGGACACATGAGA+AGG	0.615753	7.4:+10100452	MS.gene23536:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGACAAAGAGATATAGA+AGG	+	chr7.4:10100139-10100158	MS.gene23536:CDS	30.0%
AATTCTACATCTTTGAGCTT+AGG	+	chr7.4:10100370-10100389	MS.gene23536:CDS	30.0%
CATAAAAGATCAAAGCTAGA+AGG	+	chr7.4:10100331-10100350	MS.gene23536:CDS	30.0%
TAAAAGATCAAAGCTAGAAG+GGG	+	chr7.4:10100333-10100352	MS.gene23536:CDS	30.0%
TAAAGAGATTGAATAGTGCA+AGG	+	chr7.4:10100539-10100558	MS.gene23536:CDS	30.0%
TAAAGCTATTATCAACGAAG+AGG	+	chr7.4:10100477-10100496	MS.gene23536:CDS	30.0%
TTGTTATGTTGTTGATGTTG+GGG	-	chr7.4:10100211-10100230	None:intergenic	30.0%
ATGCATGAATGTTCCATTTG+TGG	+	chr7.4:10100406-10100425	MS.gene23536:CDS	35.0%
TGCATGAATGTTCCATTTGT+GGG	+	chr7.4:10100407-10100426	MS.gene23536:CDS	35.0%
TTCTCATCCTTTCAAGCACT+AGG	+	chr7.4:10100292-10100311	MS.gene23536:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	10100136	10100561	10100136	ID=MS.gene23536
chr7.4	mRNA	10100136	10100561	10100136	ID=MS.gene23536.t1;Parent=MS.gene23536
chr7.4	exon	10100136	10100561	10100136	ID=MS.gene23536.t1.exon1;Parent=MS.gene23536.t1
chr7.4	CDS	10100136	10100561	10100136	ID=cds.MS.gene23536.t1;Parent=MS.gene23536.t1

Gene Sequence

>MS.gene23536

ATGAAGAGACAAAGAGATATAGAAGGATTAGAAAGCATAGATTTGGCAAATTGTCTAATGATGCTCTCTTATCCCCAACATCAACAACATAACAATAAACCAAATCAAAAAAGTTTTGCGCCAGTGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGCCACAGAGCTAGCCATAAAAGATCAAAGCTAGAAGGGGATGAATTACTAACAAATTCTACATCTTTGAGCTTAGGAAATACGCCTAAAATGCATGAATGTTCCATTTGTGGGCAAAAATTTTCATTGGGACAAGCATTGGGTGGACACATGAGAAGGCATAAAGCTATTATCAACGAAGAGGTTTCTCCAATGGAGCAAGTTGTTATGAAATTACCAGTTTTAAAGAGATTGAATAGTGCAAGG

Protein sequence

>MS.gene23536.t1

MKRQRDIEGLESIDLANCLMMLSYPQHQQHNNKPNQKSFAPVEYECKTCNKKFSSFQALGGHRASHKRSKLEGDELLTNSTSLSLGNTPKMHECSICGQKFSLGQALGGHMRRHKAIINEEVSPMEQVVMKLPVLKRLNSAR