Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23558.t1 | XP_013445017.1 | 91.2 | 216 | 19 | 0 | 1 | 216 | 1 | 216 | 1.90E-106 | 395.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23558.t1 | O22132 | 50.0 | 204 | 81 | 3 | 6 | 209 | 4 | 186 | 1.8e-44 | 180.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23558.t1 | B7FKD7 | 91.2 | 216 | 19 | 0 | 1 | 216 | 1 | 216 | 1.4e-106 | 395.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene23558.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23558.t1 | MTR_8g036105 | 98.611 | 216 | 3 | 0 | 1 | 216 | 1 | 216 | 3.96e-160 | 441 |
MS.gene23558.t1 | MTR_7g075230 | 64.500 | 200 | 56 | 8 | 10 | 200 | 4 | 197 | 2.10e-74 | 223 |
MS.gene23558.t1 | MTR_8g036085 | 54.455 | 202 | 68 | 5 | 17 | 204 | 22 | 213 | 2.93e-64 | 199 |
MS.gene23558.t1 | MTR_7g074990 | 78.000 | 100 | 22 | 0 | 18 | 117 | 20 | 119 | 7.76e-55 | 175 |
MS.gene23558.t1 | MTR_7g096530 | 53.659 | 164 | 59 | 1 | 9 | 155 | 5 | 168 | 1.39e-52 | 169 |
MS.gene23558.t1 | MTR_1g070205 | 50.955 | 157 | 67 | 2 | 18 | 164 | 12 | 168 | 2.78e-50 | 163 |
MS.gene23558.t1 | MTR_7g096610 | 55.063 | 158 | 58 | 5 | 16 | 168 | 6 | 155 | 5.19e-49 | 160 |
MS.gene23558.t1 | MTR_1g070220 | 43.750 | 208 | 100 | 3 | 9 | 213 | 6 | 199 | 1.47e-46 | 153 |
MS.gene23558.t1 | MTR_6g027710 | 51.572 | 159 | 68 | 4 | 18 | 168 | 40 | 197 | 3.62e-44 | 147 |
MS.gene23558.t1 | MTR_5g080470 | 59.434 | 106 | 43 | 0 | 16 | 121 | 5 | 110 | 1.33e-43 | 145 |
MS.gene23558.t1 | MTR_2g068760 | 53.846 | 117 | 53 | 1 | 7 | 123 | 2 | 117 | 3.91e-38 | 130 |
MS.gene23558.t1 | MTR_5g083230 | 52.846 | 123 | 54 | 2 | 15 | 137 | 3 | 121 | 9.25e-38 | 129 |
MS.gene23558.t1 | MTR_4g083680 | 55.455 | 110 | 47 | 2 | 9 | 117 | 5 | 113 | 5.91e-37 | 127 |
MS.gene23558.t1 | MTR_3g031660 | 51.639 | 122 | 56 | 2 | 15 | 134 | 4 | 124 | 6.92e-36 | 124 |
MS.gene23558.t1 | MTR_7g033800 | 59.804 | 102 | 40 | 1 | 18 | 119 | 11 | 111 | 7.87e-36 | 124 |
MS.gene23558.t1 | MTR_4g105170 | 61.856 | 97 | 36 | 1 | 16 | 112 | 9 | 104 | 9.30e-36 | 124 |
MS.gene23558.t1 | MTR_3g077240 | 59.804 | 102 | 40 | 1 | 18 | 119 | 10 | 110 | 1.82e-35 | 124 |
MS.gene23558.t1 | MTR_5g083010 | 43.243 | 148 | 76 | 2 | 8 | 148 | 1 | 147 | 4.19e-35 | 122 |
MS.gene23558.t1 | MTR_3g071590 | 56.075 | 107 | 46 | 1 | 17 | 123 | 7 | 112 | 7.24e-35 | 121 |
MS.gene23558.t1 | MTR_6g005070 | 54.717 | 106 | 47 | 1 | 18 | 123 | 9 | 113 | 3.20e-34 | 119 |
MS.gene23558.t1 | MTR_5g083960 | 50.435 | 115 | 56 | 1 | 18 | 132 | 39 | 152 | 3.75e-34 | 120 |
MS.gene23558.t1 | MTR_6g027700 | 56.000 | 100 | 44 | 0 | 18 | 117 | 7 | 106 | 1.40e-33 | 120 |
MS.gene23558.t1 | MTR_3g071420 | 50.459 | 109 | 53 | 1 | 8 | 116 | 4 | 111 | 3.37e-33 | 118 |
MS.gene23558.t1 | MTR_5g017950 | 52.542 | 118 | 49 | 2 | 18 | 129 | 8 | 124 | 4.33e-33 | 121 |
MS.gene23558.t1 | MTR_3g073690 | 55.140 | 107 | 47 | 1 | 15 | 121 | 6 | 111 | 9.37e-33 | 117 |
MS.gene23558.t1 | MTR_3g094690 | 56.863 | 102 | 43 | 1 | 18 | 119 | 47 | 147 | 1.62e-32 | 117 |
MS.gene23558.t1 | MTR_2g093310 | 50.467 | 107 | 52 | 1 | 17 | 123 | 32 | 137 | 2.03e-32 | 116 |
MS.gene23558.t1 | MTR_6g005080 | 54.902 | 102 | 45 | 1 | 18 | 119 | 10 | 110 | 5.17e-32 | 114 |
MS.gene23558.t1 | MTR_3g094690 | 56.863 | 102 | 42 | 2 | 18 | 119 | 47 | 146 | 1.02e-30 | 113 |
MS.gene23558.t1 | MTR_3g452660 | 50.893 | 112 | 54 | 1 | 18 | 129 | 7 | 117 | 4.11e-30 | 113 |
MS.gene23558.t1 | MTR_4g060950 | 42.763 | 152 | 71 | 4 | 17 | 153 | 23 | 173 | 6.47e-30 | 110 |
MS.gene23558.t1 | MTR_1g095850 | 50.962 | 104 | 50 | 1 | 19 | 122 | 73 | 175 | 3.54e-29 | 108 |
MS.gene23558.t1 | MTR_8g040900 | 53.043 | 115 | 53 | 1 | 18 | 132 | 7 | 120 | 1.97e-28 | 107 |
MS.gene23558.t1 | MTR_5g075020 | 54.386 | 114 | 51 | 1 | 6 | 119 | 31 | 143 | 5.73e-28 | 105 |
MS.gene23558.t1 | MTR_5g075020 | 53.509 | 114 | 52 | 1 | 6 | 119 | 35 | 147 | 8.35e-28 | 105 |
MS.gene23558.t1 | MTR_5g093010 | 44.231 | 104 | 57 | 1 | 17 | 120 | 4 | 106 | 1.15e-24 | 95.1 |
MS.gene23558.t1 | MTR_7g028905 | 40.196 | 102 | 60 | 1 | 19 | 120 | 6 | 106 | 3.62e-22 | 87.8 |
MS.gene23558.t1 | MTR_8g079660 | 43.689 | 103 | 57 | 1 | 18 | 120 | 8 | 109 | 1.57e-21 | 89.7 |
MS.gene23558.t1 | MTR_6g011230 | 34.722 | 144 | 82 | 3 | 19 | 154 | 12 | 151 | 2.56e-19 | 82.4 |
MS.gene23558.t1 | MTR_4g107450 | 40.385 | 104 | 57 | 2 | 9 | 112 | 5 | 103 | 2.78e-19 | 84.3 |
MS.gene23558.t1 | MTR_8g079620 | 42.718 | 103 | 58 | 1 | 18 | 120 | 8 | 109 | 2.82e-19 | 83.2 |
MS.gene23558.t1 | MTR_6g011250 | 36.691 | 139 | 77 | 4 | 14 | 143 | 5 | 141 | 7.28e-18 | 78.2 |
MS.gene23558.t1 | MTR_8g017090 | 39.048 | 105 | 63 | 1 | 19 | 123 | 13 | 116 | 1.31e-17 | 79.7 |
MS.gene23558.t1 | MTR_4g099230 | 33.793 | 145 | 87 | 3 | 19 | 155 | 3 | 146 | 2.88e-17 | 75.9 |
MS.gene23558.t1 | MTR_2g100020 | 40.426 | 94 | 55 | 1 | 19 | 112 | 20 | 112 | 4.01e-17 | 78.2 |
MS.gene23558.t1 | MTR_6g011200 | 34.951 | 103 | 65 | 2 | 19 | 120 | 10 | 111 | 7.52e-16 | 74.3 |
MS.gene23558.t1 | MTR_8g079580 | 39.806 | 103 | 60 | 2 | 18 | 119 | 8 | 109 | 1.37e-14 | 70.5 |
MS.gene23558.t1 | MTR_5g085390 | 35.922 | 103 | 64 | 2 | 19 | 120 | 10 | 111 | 2.08e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23558.t1 | AT4G00210 | 54.464 | 224 | 79 | 3 | 8 | 214 | 1 | 218 | 1.30e-75 | 227 |
MS.gene23558.t1 | AT2G45410 | 55.440 | 193 | 59 | 4 | 21 | 210 | 19 | 187 | 1.28e-63 | 196 |
MS.gene23558.t1 | AT2G45420 | 76.699 | 103 | 24 | 0 | 21 | 123 | 40 | 142 | 6.71e-55 | 176 |
MS.gene23558.t1 | AT4G00220 | 51.256 | 199 | 65 | 4 | 21 | 201 | 20 | 204 | 1.60e-54 | 174 |
MS.gene23558.t1 | AT3G03760 | 74.510 | 102 | 26 | 0 | 18 | 119 | 51 | 152 | 5.63e-49 | 161 |
MS.gene23558.t1 | AT3G58190 | 61.157 | 121 | 45 | 1 | 18 | 138 | 11 | 129 | 6.81e-49 | 159 |
MS.gene23558.t1 | AT2G42430 | 63.158 | 114 | 42 | 0 | 10 | 123 | 7 | 120 | 6.16e-48 | 157 |
MS.gene23558.t1 | AT2G42440 | 56.489 | 131 | 52 | 3 | 16 | 143 | 5 | 133 | 1.29e-47 | 157 |
MS.gene23558.t1 | AT5G06080 | 64.000 | 100 | 36 | 0 | 16 | 115 | 5 | 104 | 2.06e-45 | 149 |
MS.gene23558.t1 | AT2G31310 | 58.559 | 111 | 44 | 1 | 16 | 126 | 5 | 113 | 2.38e-43 | 144 |
MS.gene23558.t1 | AT2G30130 | 56.881 | 109 | 46 | 1 | 15 | 123 | 5 | 112 | 1.68e-36 | 127 |
MS.gene23558.t1 | AT5G63090 | 61.165 | 103 | 39 | 1 | 18 | 120 | 11 | 112 | 2.67e-36 | 126 |
MS.gene23558.t1 | AT5G63090 | 61.165 | 103 | 39 | 1 | 18 | 120 | 11 | 112 | 2.67e-36 | 126 |
MS.gene23558.t1 | AT5G63090 | 61.165 | 103 | 39 | 1 | 18 | 120 | 11 | 112 | 2.67e-36 | 126 |
MS.gene23558.t1 | AT5G63090 | 61.165 | 103 | 39 | 1 | 18 | 120 | 11 | 112 | 2.67e-36 | 126 |
MS.gene23558.t1 | AT3G27650 | 57.843 | 102 | 42 | 1 | 18 | 119 | 39 | 139 | 3.20e-35 | 122 |
MS.gene23558.t1 | AT5G66870 | 50.000 | 142 | 60 | 3 | 18 | 149 | 7 | 147 | 4.82e-33 | 121 |
MS.gene23558.t1 | AT1G07900 | 39.744 | 156 | 89 | 2 | 17 | 168 | 32 | 186 | 1.62e-32 | 116 |
MS.gene23558.t1 | AT1G31320 | 53.535 | 99 | 45 | 1 | 7 | 105 | 2 | 99 | 3.07e-32 | 115 |
MS.gene23558.t1 | AT1G16530 | 39.623 | 159 | 86 | 3 | 9 | 166 | 5 | 154 | 3.20e-32 | 115 |
MS.gene23558.t1 | AT3G11090 | 48.182 | 110 | 56 | 1 | 10 | 119 | 3 | 111 | 2.53e-31 | 112 |
MS.gene23558.t1 | AT2G28500 | 50.943 | 106 | 51 | 1 | 18 | 123 | 55 | 159 | 5.50e-31 | 114 |
MS.gene23558.t1 | AT2G30340 | 49.153 | 118 | 59 | 1 | 18 | 135 | 52 | 168 | 1.30e-30 | 114 |
MS.gene23558.t1 | AT2G30340 | 49.153 | 118 | 59 | 1 | 18 | 135 | 53 | 169 | 1.59e-30 | 113 |
MS.gene23558.t1 | AT3G26660 | 47.619 | 105 | 54 | 1 | 19 | 123 | 6 | 109 | 4.01e-30 | 108 |
MS.gene23558.t1 | AT3G26620 | 47.619 | 105 | 54 | 1 | 19 | 123 | 6 | 109 | 6.52e-30 | 107 |
MS.gene23558.t1 | AT1G65620 | 55.455 | 110 | 48 | 1 | 18 | 127 | 9 | 117 | 8.98e-28 | 104 |
MS.gene23558.t1 | AT1G65620 | 55.455 | 110 | 48 | 1 | 18 | 127 | 9 | 117 | 8.98e-28 | 104 |
MS.gene23558.t1 | AT1G65620 | 55.455 | 110 | 48 | 1 | 18 | 127 | 9 | 117 | 8.98e-28 | 104 |
MS.gene23558.t1 | AT1G65620 | 55.455 | 110 | 48 | 1 | 18 | 127 | 9 | 117 | 8.98e-28 | 104 |
MS.gene23558.t1 | AT1G65620 | 55.455 | 110 | 48 | 1 | 18 | 127 | 9 | 117 | 8.98e-28 | 104 |
MS.gene23558.t1 | AT2G23660 | 49.515 | 103 | 51 | 1 | 18 | 120 | 5 | 106 | 1.03e-27 | 107 |
MS.gene23558.t1 | AT2G23660 | 49.515 | 103 | 51 | 1 | 18 | 120 | 5 | 106 | 1.03e-27 | 107 |
MS.gene23558.t1 | AT2G23660 | 49.515 | 103 | 51 | 1 | 18 | 120 | 5 | 106 | 1.03e-27 | 107 |
MS.gene23558.t1 | AT2G40470 | 58.824 | 102 | 41 | 1 | 18 | 119 | 20 | 120 | 1.36e-27 | 104 |
MS.gene23558.t1 | AT2G40470 | 58.824 | 102 | 41 | 1 | 18 | 119 | 45 | 145 | 1.58e-27 | 104 |
MS.gene23558.t1 | AT3G50510 | 42.982 | 114 | 64 | 1 | 18 | 131 | 12 | 124 | 2.02e-24 | 95.9 |
MS.gene23558.t1 | AT3G50510 | 42.982 | 114 | 64 | 1 | 18 | 131 | 12 | 124 | 2.02e-24 | 95.9 |
MS.gene23558.t1 | AT1G72980 | 41.176 | 119 | 61 | 2 | 19 | 137 | 14 | 123 | 1.18e-18 | 81.3 |
MS.gene23558.t1 | AT3G13850 | 40.196 | 102 | 60 | 1 | 19 | 120 | 37 | 137 | 5.57e-18 | 80.5 |
MS.gene23558.t1 | AT5G35900 | 36.538 | 104 | 65 | 1 | 19 | 122 | 6 | 108 | 2.47e-17 | 77.4 |
MS.gene23558.t1 | AT3G47870 | 33.333 | 108 | 69 | 2 | 14 | 119 | 30 | 136 | 2.92e-16 | 76.3 |
MS.gene23558.t1 | AT1G06280 | 44.000 | 75 | 41 | 1 | 19 | 93 | 25 | 98 | 8.61e-15 | 70.5 |
Find 46 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGATGGAGCTAGCGATAT+TGG | 0.266369 | 8.4:+61325096 | None:intergenic |
TTGAGAAGAAAGTGTGTAAA+AGG | 0.270115 | 8.4:-61331647 | MS.gene23558:CDS |
AGGGCTAGAGACCCTGTTTA+TGG | 0.285999 | 8.4:-61331464 | MS.gene23558:CDS |
CCTTGGTCTGAATCAAAATA+TGG | 0.327800 | 8.4:+61331611 | None:intergenic |
GGTGAAGAGCTTTGAGGGTT+TGG | 0.329428 | 8.4:+61325072 | None:intergenic |
CTTTGAGGGTTTGGAAGAGA+TGG | 0.383095 | 8.4:+61325081 | None:intergenic |
TGAGCAACACAACCATAAAC+AGG | 0.389890 | 8.4:+61331452 | None:intergenic |
GAGATGGAGCTAGCGATATT+GGG | 0.399594 | 8.4:+61325097 | None:intergenic |
GCAGCAGTTCATAAAGTGTT+TGG | 0.414624 | 8.4:-61331575 | MS.gene23558:CDS |
GGCGCAGGTTATGAGCTTGC+AGG | 0.416172 | 8.4:-61325166 | MS.gene23558:intron |
TATCTTTGCACTTCAACAAC+AGG | 0.440225 | 8.4:-61331429 | MS.gene23558:intron |
TGATGATGAACTCCAAGCTT+TGG | 0.447081 | 8.4:-61324905 | MS.gene23558:CDS |
CGCAAGAGTGGCTTGAACAT+AGG | 0.447193 | 8.4:+61325134 | None:intergenic |
AAAATGCATGGACATGTTAG+AGG | 0.451013 | 8.4:+61324996 | None:intergenic |
AATACGCATGAGTAACTTAG+AGG | 0.455089 | 8.4:+61331541 | None:intergenic |
CTGCAAAATGAACCGTTCCT+TGG | 0.456736 | 8.4:+61331594 | None:intergenic |
AACTTGGTGAAGAGCTTTGA+GGG | 0.457519 | 8.4:+61325067 | None:intergenic |
AGTAACTAGTGAGAATTAGA+TGG | 0.459047 | 8.4:+61324838 | None:intergenic |
TTTGCTATGAAGCTCTTGCT+AGG | 0.463484 | 8.4:-61331484 | MS.gene23558:CDS |
TCATTCCTCCTCAGATCACT+TGG | 0.466936 | 8.4:-61325043 | MS.gene23558:CDS |
CAAATTCTCGAGCCAAAGCT+TGG | 0.467986 | 8.4:+61324893 | None:intergenic |
AAACTTGGTGAAGAGCTTTG+AGG | 0.503962 | 8.4:+61325066 | None:intergenic |
TCATCAACCACTTTCATCAC+TGG | 0.504907 | 8.4:-61324968 | MS.gene23558:CDS |
TTGCTATGAAGCTCTTGCTA+GGG | 0.514592 | 8.4:-61331483 | MS.gene23558:CDS |
TTTGTCTCTAGGTACTTGCC+TGG | 0.516400 | 8.4:-61324874 | MS.gene23558:CDS |
TACTGTGGAGGAAAGATTGG+TGG | 0.519503 | 8.4:-61331713 | MS.gene23558:CDS |
GGAAGTGATCAAAGAGGTGG+TGG | 0.521500 | 8.4:-61331692 | MS.gene23558:CDS |
GATTACTGTGGAGGAAAGAT+TGG | 0.525418 | 8.4:-61331716 | MS.gene23558:CDS |
CATTCCTCCTCAGATCACTT+GGG | 0.532364 | 8.4:-61325042 | MS.gene23558:CDS |
GCATCAAGACGTTTATGAGC+TGG | 0.532888 | 8.4:+61331518 | None:intergenic |
TGGCTCGAGAATTTGTCTCT+AGG | 0.535132 | 8.4:-61324885 | MS.gene23558:CDS |
ACTAGTGAGAATTAGATGGC+TGG | 0.550122 | 8.4:+61324842 | None:intergenic |
GCGCTGCATTGTCGCAAGAG+TGG | 0.559032 | 8.4:+61325122 | None:intergenic |
CAAAGAGGTGGTGGGCCTTG+TGG | 0.560863 | 8.4:-61331683 | MS.gene23558:CDS |
GATGGCTGGAATCTTACTCC+AGG | 0.577857 | 8.4:+61324856 | None:intergenic |
TCTGAGGAGGAATGAAAACT+TGG | 0.592858 | 8.4:+61325051 | None:intergenic |
ATTTGTTCCCAAGTGATCTG+AGG | 0.614152 | 8.4:+61325035 | None:intergenic |
TGTTCCCAAGTGATCTGAGG+AGG | 0.621503 | 8.4:+61325038 | None:intergenic |
CTCAAGTCCAGTGATGAAAG+TGG | 0.626559 | 8.4:+61324961 | None:intergenic |
TTGATGAGGATCAAAATGCA+TGG | 0.659360 | 8.4:+61324984 | None:intergenic |
AGTGATGAAAGTGGTTGATG+AGG | 0.671964 | 8.4:+61324970 | None:intergenic |
GGTGGAAGTGATCAAAGAGG+TGG | 0.685701 | 8.4:-61331695 | MS.gene23558:CDS |
ATGGAGCTAGCGATATTGGG+AGG | 0.696834 | 8.4:+61325100 | None:intergenic |
GAAGTGATCAAAGAGGTGGT+GGG | 0.697323 | 8.4:-61331691 | MS.gene23558:CDS |
GAGCAACACAACCATAAACA+GGG | 0.702970 | 8.4:+61331453 | None:intergenic |
ATTGGTGGAAGTGATCAAAG+AGG | 0.716315 | 8.4:-61331698 | MS.gene23558:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 61324843 | 61331741 | 61324843 | ID=MS.gene23558 |
chr8.4 | mRNA | 61324843 | 61331741 | 61324843 | ID=MS.gene23558.t1;Parent=MS.gene23558 |
chr8.4 | exon | 61331430 | 61331741 | 61331430 | ID=MS.gene23558.t1.exon1;Parent=MS.gene23558.t1 |
chr8.4 | CDS | 61331430 | 61331741 | 61331430 | ID=cds.MS.gene23558.t1;Parent=MS.gene23558.t1 |
chr8.4 | exon | 61324843 | 61325181 | 61324843 | ID=MS.gene23558.t1.exon2;Parent=MS.gene23558.t1 |
chr8.4 | CDS | 61324843 | 61325181 | 61324843 | ID=cds.MS.gene23558.t1;Parent=MS.gene23558.t1 |
Gene Sequence |
Protein sequence |