Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23560.t1 | XP_013445020.1 | 79.7 | 251 | 45 | 2 | 1 | 249 | 1 | 247 | 2.10E-104 | 388.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23560.t1 | Q9FJK3 | 53.1 | 179 | 82 | 2 | 1 | 178 | 1 | 178 | 1.5e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23560.t1 | A0A072TZT1 | 79.7 | 251 | 45 | 2 | 1 | 249 | 1 | 247 | 1.5e-104 | 388.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23560.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23560.t1 | MTR_8g036130 | 86.454 | 251 | 28 | 2 | 1 | 249 | 1 | 247 | 2.01e-151 | 422 |
| MS.gene23560.t1 | MTR_4g032620 | 59.839 | 249 | 82 | 2 | 1 | 249 | 1 | 231 | 1.46e-105 | 305 |
| MS.gene23560.t1 | MTR_4g031910 | 58.233 | 249 | 84 | 4 | 1 | 249 | 1 | 229 | 6.95e-90 | 265 |
| MS.gene23560.t1 | MTR_4g032290 | 56.471 | 255 | 81 | 5 | 1 | 249 | 1 | 231 | 7.10e-81 | 242 |
| MS.gene23560.t1 | MTR_3g065100 | 57.895 | 247 | 94 | 5 | 1 | 246 | 1 | 238 | 1.95e-79 | 239 |
| MS.gene23560.t1 | MTR_3g466980 | 51.807 | 249 | 88 | 6 | 1 | 245 | 1 | 221 | 1.64e-76 | 231 |
| MS.gene23560.t1 | MTR_4g032260 | 70.513 | 156 | 46 | 0 | 1 | 156 | 1 | 156 | 7.63e-67 | 204 |
| MS.gene23560.t1 | MTR_2g035610 | 77.049 | 122 | 28 | 0 | 1 | 122 | 1 | 122 | 1.00e-60 | 187 |
| MS.gene23560.t1 | MTR_3g466830 | 50.314 | 159 | 78 | 1 | 3 | 161 | 2 | 159 | 1.33e-54 | 173 |
| MS.gene23560.t1 | MTR_4g063790 | 44.379 | 169 | 94 | 0 | 1 | 169 | 1 | 169 | 9.83e-49 | 158 |
| MS.gene23560.t1 | MTR_3g466890 | 46.203 | 158 | 84 | 1 | 3 | 160 | 2 | 158 | 5.59e-47 | 154 |
| MS.gene23560.t1 | MTR_2g016210 | 45.238 | 168 | 88 | 1 | 1 | 168 | 1 | 164 | 1.15e-45 | 153 |
| MS.gene23560.t1 | MTR_3g467080 | 43.312 | 157 | 89 | 0 | 1 | 157 | 1 | 157 | 2.95e-45 | 149 |
| MS.gene23560.t1 | MTR_5g047580 | 45.860 | 157 | 83 | 2 | 1 | 157 | 1 | 155 | 3.02e-44 | 146 |
| MS.gene23560.t1 | MTR_3g031100 | 42.675 | 157 | 90 | 0 | 1 | 157 | 1 | 157 | 1.35e-42 | 145 |
| MS.gene23560.t1 | MTR_5g075380 | 40.909 | 154 | 90 | 1 | 1 | 154 | 1 | 153 | 3.55e-41 | 139 |
| MS.gene23560.t1 | MTR_3g031240 | 39.506 | 162 | 98 | 0 | 1 | 162 | 1 | 162 | 1.54e-38 | 133 |
| MS.gene23560.t1 | MTR_1g090783 | 40.385 | 156 | 91 | 2 | 3 | 158 | 2 | 155 | 5.28e-37 | 128 |
| MS.gene23560.t1 | MTR_7g011950 | 44.586 | 157 | 85 | 2 | 1 | 157 | 1 | 155 | 2.36e-36 | 126 |
| MS.gene23560.t1 | MTR_1g090697 | 37.975 | 158 | 96 | 2 | 1 | 158 | 1 | 156 | 5.52e-36 | 125 |
| MS.gene23560.t1 | MTR_1g084950 | 43.949 | 157 | 86 | 2 | 1 | 157 | 1 | 155 | 7.80e-36 | 125 |
| MS.gene23560.t1 | MTR_1g077390 | 39.490 | 157 | 93 | 2 | 1 | 157 | 1 | 155 | 1.33e-35 | 124 |
| MS.gene23560.t1 | MTR_1g090710 | 36.709 | 158 | 99 | 1 | 1 | 158 | 1 | 157 | 3.15e-35 | 123 |
| MS.gene23560.t1 | MTR_7g055800 | 56.303 | 119 | 24 | 2 | 1 | 119 | 1 | 91 | 2.86e-34 | 119 |
| MS.gene23560.t1 | MTR_1g077320 | 42.675 | 157 | 88 | 2 | 1 | 157 | 1 | 155 | 5.94e-34 | 120 |
| MS.gene23560.t1 | MTR_3g466900 | 41.085 | 129 | 75 | 1 | 32 | 160 | 2 | 129 | 6.08e-34 | 119 |
| MS.gene23560.t1 | MTR_4g028720 | 42.675 | 157 | 88 | 2 | 1 | 157 | 1 | 155 | 1.56e-33 | 119 |
| MS.gene23560.t1 | MTR_3g466930 | 41.860 | 129 | 74 | 1 | 32 | 160 | 2 | 129 | 9.44e-33 | 116 |
| MS.gene23560.t1 | MTR_3g465410 | 42.857 | 126 | 72 | 0 | 29 | 154 | 1 | 126 | 1.28e-32 | 116 |
| MS.gene23560.t1 | MTR_1g077300 | 43.949 | 157 | 84 | 2 | 1 | 157 | 1 | 153 | 7.40e-32 | 115 |
| MS.gene23560.t1 | MTR_2g035580 | 41.667 | 156 | 90 | 1 | 1 | 156 | 1 | 155 | 2.81e-31 | 113 |
| MS.gene23560.t1 | MTR_7g055790 | 55.856 | 111 | 31 | 1 | 1 | 111 | 59 | 151 | 1.35e-30 | 111 |
| MS.gene23560.t1 | MTR_4g028800 | 73.611 | 72 | 17 | 1 | 1 | 72 | 1 | 70 | 1.80e-30 | 108 |
| MS.gene23560.t1 | MTR_7g055940 | 55.660 | 106 | 19 | 2 | 1 | 106 | 1 | 78 | 3.39e-28 | 102 |
| MS.gene23560.t1 | MTR_2g035590 | 59.406 | 101 | 38 | 1 | 74 | 174 | 1 | 98 | 1.71e-27 | 101 |
| MS.gene23560.t1 | MTR_5g047560 | 36.306 | 157 | 82 | 3 | 1 | 157 | 1 | 139 | 8.27e-26 | 99.0 |
| MS.gene23560.t1 | MTR_4g019670 | 39.716 | 141 | 76 | 2 | 1 | 138 | 1 | 135 | 1.03e-25 | 105 |
| MS.gene23560.t1 | MTR_7g106510 | 38.298 | 141 | 78 | 2 | 1 | 138 | 1 | 135 | 1.68e-25 | 104 |
| MS.gene23560.t1 | MTR_3g093900 | 33.566 | 143 | 95 | 0 | 3 | 145 | 6 | 148 | 5.64e-24 | 100 |
| MS.gene23560.t1 | MTR_4g032270 | 41.739 | 115 | 48 | 2 | 135 | 249 | 36 | 131 | 4.06e-22 | 89.0 |
| MS.gene23560.t1 | MTR_4g084780 | 69.231 | 52 | 16 | 0 | 74 | 125 | 1 | 52 | 8.50e-18 | 78.2 |
| MS.gene23560.t1 | MTR_6g018920 | 28.125 | 160 | 100 | 6 | 1 | 154 | 1 | 151 | 9.76e-14 | 70.1 |
| MS.gene23560.t1 | MTR_1g114730 | 28.319 | 113 | 74 | 3 | 1 | 107 | 1 | 112 | 3.28e-12 | 65.9 |
| MS.gene23560.t1 | MTR_6g005450 | 31.858 | 113 | 70 | 4 | 1 | 107 | 1 | 112 | 4.75e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23560.t1 | AT5G48670 | 53.977 | 176 | 79 | 2 | 1 | 175 | 1 | 175 | 3.27e-58 | 187 |
| MS.gene23560.t1 | AT1G65300 | 44.172 | 163 | 90 | 1 | 3 | 165 | 2 | 163 | 4.23e-44 | 150 |
| MS.gene23560.t1 | AT5G26650 | 43.396 | 159 | 89 | 1 | 4 | 162 | 2 | 159 | 4.44e-42 | 147 |
| MS.gene23560.t1 | AT3G05860 | 44.512 | 164 | 90 | 1 | 1 | 164 | 1 | 163 | 7.58e-42 | 142 |
| MS.gene23560.t1 | AT5G26630 | 46.629 | 178 | 94 | 1 | 1 | 178 | 1 | 177 | 1.19e-41 | 142 |
| MS.gene23560.t1 | AT3G05860 | 40.500 | 200 | 109 | 3 | 1 | 199 | 1 | 191 | 1.46e-41 | 142 |
| MS.gene23560.t1 | AT3G05860 | 44.512 | 164 | 90 | 1 | 1 | 164 | 1 | 163 | 2.56e-41 | 142 |
| MS.gene23560.t1 | AT5G27960 | 42.767 | 159 | 90 | 1 | 4 | 162 | 2 | 159 | 2.74e-41 | 144 |
| MS.gene23560.t1 | AT1G65330 | 41.379 | 174 | 99 | 2 | 3 | 174 | 2 | 174 | 4.94e-40 | 139 |
| MS.gene23560.t1 | AT5G27810 | 59.140 | 93 | 38 | 0 | 29 | 121 | 1 | 93 | 8.54e-37 | 126 |
| MS.gene23560.t1 | AT1G31630 | 36.810 | 163 | 101 | 2 | 3 | 165 | 2 | 162 | 2.77e-36 | 131 |
| MS.gene23560.t1 | AT1G31640 | 37.423 | 163 | 100 | 2 | 3 | 165 | 2 | 162 | 7.22e-34 | 127 |
| MS.gene23560.t1 | AT2G28700 | 37.037 | 162 | 97 | 2 | 1 | 160 | 1 | 159 | 1.10e-33 | 124 |
| MS.gene23560.t1 | AT1G22590 | 33.742 | 163 | 104 | 1 | 1 | 163 | 1 | 159 | 5.36e-29 | 107 |
| MS.gene23560.t1 | AT5G26580 | 36.646 | 161 | 87 | 2 | 1 | 161 | 1 | 146 | 7.74e-29 | 112 |
| MS.gene23560.t1 | AT2G40210 | 40.152 | 132 | 79 | 0 | 1 | 132 | 1 | 132 | 5.26e-22 | 93.6 |
| MS.gene23560.t1 | AT5G06500 | 29.870 | 154 | 106 | 1 | 1 | 154 | 1 | 152 | 8.72e-20 | 85.5 |
| MS.gene23560.t1 | AT5G58890 | 41.964 | 112 | 56 | 4 | 1 | 105 | 1 | 110 | 7.18e-16 | 75.9 |
| MS.gene23560.t1 | AT5G55690 | 35.484 | 124 | 71 | 3 | 1 | 115 | 1 | 124 | 3.74e-15 | 73.6 |
| MS.gene23560.t1 | AT5G55690 | 35.484 | 124 | 71 | 3 | 1 | 115 | 1 | 124 | 3.74e-15 | 73.6 |
| MS.gene23560.t1 | AT2G15660 | 25.000 | 164 | 105 | 4 | 38 | 201 | 31 | 176 | 1.42e-12 | 65.9 |
Find 56 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGCTTTGTTCCATTTC+AGG | 0.136228 | 8.4:+61295859 | None:intergenic |
| TCCCAATGTCCTTCAAATTT+TGG | 0.150964 | 8.4:+61295650 | None:intergenic |
| GAAGCTTGTGCTATAATTTA+CGG | 0.231910 | 8.4:-61295958 | MS.gene23560:CDS |
| GACTAATCATGATTTGATTC+TGG | 0.234615 | 8.4:+61295587 | None:intergenic |
| CTAGTCTTCAAAGTGGATTT+TGG | 0.248575 | 8.4:-61295372 | MS.gene23560:CDS |
| ATGATGAGTCGTGACCATTT+TGG | 0.256307 | 8.4:-61295499 | MS.gene23560:CDS |
| TTTGGGATAGTTATGAATAA+TGG | 0.329950 | 8.4:-61295481 | MS.gene23560:CDS |
| TCAGACATTGAAACATTAGA+AGG | 0.343484 | 8.4:+61295740 | None:intergenic |
| ATGAACCACAACCTGAGATT+TGG | 0.352882 | 8.4:-61295930 | MS.gene23560:CDS |
| CTTTAGCCTTCATCACCCTT+TGG | 0.360586 | 8.4:+61295809 | None:intergenic |
| ACCAAAATTTGAAGGACATT+GGG | 0.367874 | 8.4:-61295651 | MS.gene23560:CDS |
| ATTCAAGACAATGCCTGAAA+TGG | 0.391921 | 8.4:-61295872 | MS.gene23560:CDS |
| TGAGATTTGGCCATCCCCTT+GGG | 0.393251 | 8.4:-61295917 | MS.gene23560:CDS |
| ATCTCAGGTTGTGGTTCATA+AGG | 0.415912 | 8.4:+61295934 | None:intergenic |
| GAATCATGGGGATGACCAAA+TGG | 0.421001 | 8.4:+61295394 | None:intergenic |
| TATTCATAACTATCCCAAAA+TGG | 0.424398 | 8.4:+61295485 | None:intergenic |
| GACCAAAATTTGAAGGACAT+TGG | 0.425243 | 8.4:-61295652 | MS.gene23560:CDS |
| GGAAAGCAACATACAAGAAA+AGG | 0.431751 | 8.4:-61296032 | MS.gene23560:CDS |
| CTCATTCAAGGTAGTAGATT+AGG | 0.433236 | 8.4:+61295349 | None:intergenic |
| CATGTGATGGTGGTGCCATT+TGG | 0.434827 | 8.4:+61295542 | None:intergenic |
| AATTTGATGATGAATGATAA+TGG | 0.435040 | 8.4:-61295430 | MS.gene23560:CDS |
| GTTGATTGACCAAAATTTGA+AGG | 0.435105 | 8.4:-61295659 | MS.gene23560:CDS |
| CACTTTGAAGACTAGAATCA+TGG | 0.444107 | 8.4:+61295380 | None:intergenic |
| GACGAACTAAGCACACTTTG+TGG | 0.444181 | 8.4:-61295985 | MS.gene23560:CDS |
| CAAGGGGATGGCCAAATCTC+AGG | 0.453389 | 8.4:+61295919 | None:intergenic |
| AATTGAACTTCTCTCTGAGT+TGG | 0.458967 | 8.4:+61295565 | None:intergenic |
| CTGAGATTTGGCCATCCCCT+TGG | 0.462588 | 8.4:-61295918 | MS.gene23560:CDS |
| TTTCACCTTTCTTCTAGTCA+TGG | 0.469195 | 8.4:+61296083 | None:intergenic |
| GAAGGACATTGGGAGAAGGT+TGG | 0.475154 | 8.4:-61295641 | MS.gene23560:CDS |
| TTGGAAGCAGTGGACAATAA+TGG | 0.490759 | 8.4:-61295622 | MS.gene23560:CDS |
| AACATACAAGAAAAGGAAGA+AGG | 0.492306 | 8.4:-61296025 | MS.gene23560:CDS |
| GGAGATGAGAAAGTCCCATT+TGG | 0.495533 | 8.4:-61295409 | MS.gene23560:CDS |
| ATGTTTCAATGTCTGAATGC+AGG | 0.499753 | 8.4:-61295733 | MS.gene23560:CDS |
| TCTTCATTCTTGACATGTGA+TGG | 0.500207 | 8.4:+61295529 | None:intergenic |
| TTGATGTGAATCATCTTACT+TGG | 0.506323 | 8.4:-61295681 | MS.gene23560:CDS |
| CATGAACCAAAGGGTGATGA+AGG | 0.509359 | 8.4:-61295815 | MS.gene23560:CDS |
| AATCATGGGGATGACCAAAT+GGG | 0.520667 | 8.4:+61295395 | None:intergenic |
| TGGGAGAAGGTTGGAAGCAG+TGG | 0.521549 | 8.4:-61295632 | MS.gene23560:CDS |
| GAGAGAAGTTCAATTCCAAA+TGG | 0.524320 | 8.4:-61295557 | MS.gene23560:CDS |
| CAAAACCATGACTAGAAGAA+AGG | 0.529842 | 8.4:-61296088 | None:intergenic |
| TGTTTCAATGTCTGAATGCA+GGG | 0.544428 | 8.4:-61295732 | MS.gene23560:CDS |
| ATTTGAAGGACATTGGGAGA+AGG | 0.551499 | 8.4:-61295645 | MS.gene23560:CDS |
| TGCAGCGTCATTGACAATGA+AGG | 0.552900 | 8.4:+61296056 | None:intergenic |
| ACTTTGAAGACTAGAATCAT+GGG | 0.558829 | 8.4:+61295381 | None:intergenic |
| CATGATTCTAGTCTTCAAAG+TGG | 0.564073 | 8.4:-61295379 | MS.gene23560:CDS |
| AAGAGACTTTCATGAACCAA+AGG | 0.569196 | 8.4:-61295825 | MS.gene23560:CDS |
| GATGGCCAAATCTCAGGTTG+TGG | 0.572435 | 8.4:+61295925 | None:intergenic |
| GGTGATGAAGGCTAAAGAGC+AGG | 0.574380 | 8.4:-61295803 | MS.gene23560:CDS |
| TCATTCTTGACATGTGATGG+TGG | 0.582023 | 8.4:+61295532 | None:intergenic |
| GAGATTTGGCCATCCCCTTG+GGG | 0.591825 | 8.4:-61295916 | MS.gene23560:CDS |
| AGAGACTTTCATGAACCAAA+GGG | 0.592104 | 8.4:-61295824 | MS.gene23560:CDS |
| ACATACAAGAAAAGGAAGAA+GGG | 0.593121 | 8.4:-61296024 | MS.gene23560:CDS |
| TCATTGTCAATGACGCTGCA+AGG | 0.601167 | 8.4:-61296053 | MS.gene23560:CDS |
| CAGACATTGAAACATTAGAA+GGG | 0.603894 | 8.4:+61295741 | None:intergenic |
| CTTTGAAGACTAGAATCATG+GGG | 0.693220 | 8.4:+61295382 | None:intergenic |
| TGTGCAGAACAATATGTCAG+TGG | 0.716818 | 8.4:-61295704 | MS.gene23560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGATGATGAATGATAA+TGG | - | chr8.4:61296005-61296024 | MS.gene23560:CDS | 20.0% |
| ! | AAAACAACAAAAAGACAACA+AGG | - | chr8.4:61295659-61295678 | MS.gene23560:CDS | 25.0% |
| ! | TATTCATAACTATCCCAAAA+TGG | + | chr8.4:61295953-61295972 | None:intergenic | 25.0% |
| !! | TTTGGGATAGTTATGAATAA+TGG | - | chr8.4:61295954-61295973 | MS.gene23560:CDS | 25.0% |
| AACATACAAGAAAAGGAAGA+AGG | - | chr8.4:61295410-61295429 | MS.gene23560:CDS | 30.0% | |
| ACATACAAGAAAAGGAAGAA+GGG | - | chr8.4:61295411-61295430 | MS.gene23560:CDS | 30.0% | |
| ACCAAAATTTGAAGGACATT+GGG | - | chr8.4:61295784-61295803 | MS.gene23560:CDS | 30.0% | |
| CAGACATTGAAACATTAGAA+GGG | + | chr8.4:61295697-61295716 | None:intergenic | 30.0% | |
| GAAGCTTGTGCTATAATTTA+CGG | - | chr8.4:61295477-61295496 | MS.gene23560:CDS | 30.0% | |
| GACTAATCATGATTTGATTC+TGG | + | chr8.4:61295851-61295870 | None:intergenic | 30.0% | |
| GTTGATTGACCAAAATTTGA+AGG | - | chr8.4:61295776-61295795 | MS.gene23560:CDS | 30.0% | |
| TCAGACATTGAAACATTAGA+AGG | + | chr8.4:61295698-61295717 | None:intergenic | 30.0% | |
| TTGATGTGAATCATCTTACT+TGG | - | chr8.4:61295754-61295773 | MS.gene23560:CDS | 30.0% | |
| ! | ACTTTGAAGACTAGAATCAT+GGG | + | chr8.4:61296057-61296076 | None:intergenic | 30.0% |
| !! | TGAATTTTGAGAGCACATTT+TGG | + | chr8.4:61295548-61295567 | None:intergenic | 30.0% |
| AAGAGACTTTCATGAACCAA+AGG | - | chr8.4:61295610-61295629 | MS.gene23560:CDS | 35.0% | |
| AATTGAACTTCTCTCTGAGT+TGG | + | chr8.4:61295873-61295892 | None:intergenic | 35.0% | |
| AGAGACTTTCATGAACCAAA+GGG | - | chr8.4:61295611-61295630 | MS.gene23560:CDS | 35.0% | |
| ATGTTTCAATGTCTGAATGC+AGG | - | chr8.4:61295702-61295721 | MS.gene23560:CDS | 35.0% | |
| ATTCAAGACAATGCCTGAAA+TGG | - | chr8.4:61295563-61295582 | MS.gene23560:CDS | 35.0% | |
| GACCAAAATTTGAAGGACAT+TGG | - | chr8.4:61295783-61295802 | MS.gene23560:CDS | 35.0% | |
| GAGAGAAGTTCAATTCCAAA+TGG | - | chr8.4:61295878-61295897 | MS.gene23560:CDS | 35.0% | |
| GGAAAGCAACATACAAGAAA+AGG | - | chr8.4:61295403-61295422 | MS.gene23560:CDS | 35.0% | |
| TCTTCATTCTTGACATGTGA+TGG | + | chr8.4:61295909-61295928 | None:intergenic | 35.0% | |
| TGTTTCAATGTCTGAATGCA+GGG | - | chr8.4:61295703-61295722 | MS.gene23560:CDS | 35.0% | |
| ! | CACTTTGAAGACTAGAATCA+TGG | + | chr8.4:61296058-61296077 | None:intergenic | 35.0% |
| ! | CATGATTCTAGTCTTCAAAG+TGG | - | chr8.4:61296056-61296075 | MS.gene23560:CDS | 35.0% |
| ! | CTTTGAAGACTAGAATCATG+GGG | + | chr8.4:61296056-61296075 | None:intergenic | 35.0% |
| ! | TCCCAATGTCCTTCAAATTT+TGG | + | chr8.4:61295788-61295807 | None:intergenic | 35.0% |
| ! | TTCTTGCTTTGTTCCATTTC+AGG | + | chr8.4:61295579-61295598 | None:intergenic | 35.0% |
| !! | CTAGTCTTCAAAGTGGATTT+TGG | - | chr8.4:61296063-61296082 | MS.gene23560:CDS | 35.0% |
| AATCATGGGGATGACCAAAT+GGG | + | chr8.4:61296043-61296062 | None:intergenic | 40.0% | |
| ATGAACCACAACCTGAGATT+TGG | - | chr8.4:61295505-61295524 | MS.gene23560:CDS | 40.0% | |
| ATTTGAAGGACATTGGGAGA+AGG | - | chr8.4:61295790-61295809 | MS.gene23560:CDS | 40.0% | |
| TCATTCTTGACATGTGATGG+TGG | + | chr8.4:61295906-61295925 | None:intergenic | 40.0% | |
| TGTGCAGAACAATATGTCAG+TGG | - | chr8.4:61295731-61295750 | MS.gene23560:CDS | 40.0% | |
| TTGGAAGCAGTGGACAATAA+TGG | - | chr8.4:61295813-61295832 | MS.gene23560:CDS | 40.0% | |
| ! | ATCTCAGGTTGTGGTTCATA+AGG | + | chr8.4:61295504-61295523 | None:intergenic | 40.0% |
| ! | ATGATGAGTCGTGACCATTT+TGG | - | chr8.4:61295936-61295955 | MS.gene23560:CDS | 40.0% |
| ! | TGATGAGTCGTGACCATTTT+GGG | - | chr8.4:61295937-61295956 | MS.gene23560:CDS | 40.0% |
| CATGAACCAAAGGGTGATGA+AGG | - | chr8.4:61295620-61295639 | MS.gene23560:CDS | 45.0% | |
| GAATCATGGGGATGACCAAA+TGG | + | chr8.4:61296044-61296063 | None:intergenic | 45.0% | |
| GACGAACTAAGCACACTTTG+TGG | - | chr8.4:61295450-61295469 | MS.gene23560:CDS | 45.0% | |
| GGAGATGAGAAAGTCCCATT+TGG | - | chr8.4:61296026-61296045 | MS.gene23560:CDS | 45.0% | |
| TCATTGTCAATGACGCTGCA+AGG | - | chr8.4:61295382-61295401 | MS.gene23560:CDS | 45.0% | |
| TGCAGCGTCATTGACAATGA+AGG | + | chr8.4:61295382-61295401 | None:intergenic | 45.0% | |
| ! | CTTTAGCCTTCATCACCCTT+TGG | + | chr8.4:61295629-61295648 | None:intergenic | 45.0% |
| GAAGGACATTGGGAGAAGGT+TGG | - | chr8.4:61295794-61295813 | MS.gene23560:CDS | 50.0% | |
| GGTGATGAAGGCTAAAGAGC+AGG | - | chr8.4:61295632-61295651 | MS.gene23560:CDS | 50.0% | |
| TGAGATTTGGCCATCCCCTT+GGG | - | chr8.4:61295518-61295537 | MS.gene23560:CDS | 50.0% | |
| ! | AGCACATTTTGGACTCCCCA+AGG | + | chr8.4:61295537-61295556 | None:intergenic | 50.0% |
| ! | CACATTTTGGACTCCCCAAG+GGG | + | chr8.4:61295535-61295554 | None:intergenic | 50.0% |
| ! | GATGGCCAAATCTCAGGTTG+TGG | + | chr8.4:61295513-61295532 | None:intergenic | 50.0% |
| ! | GCACATTTTGGACTCCCCAA+GGG | + | chr8.4:61295536-61295555 | None:intergenic | 50.0% |
| !! | CATGTGATGGTGGTGCCATT+TGG | + | chr8.4:61295896-61295915 | None:intergenic | 50.0% |
| CAAGGGGATGGCCAAATCTC+AGG | + | chr8.4:61295519-61295538 | None:intergenic | 55.0% | |
| CTGAGATTTGGCCATCCCCT+TGG | - | chr8.4:61295517-61295536 | MS.gene23560:CDS | 55.0% | |
| GAGATTTGGCCATCCCCTTG+GGG | - | chr8.4:61295519-61295538 | MS.gene23560:CDS | 55.0% | |
| TGGGAGAAGGTTGGAAGCAG+TGG | - | chr8.4:61295803-61295822 | MS.gene23560:CDS | 55.0% | |
| ! | TTTTGGACTCCCCAAGGGGA+TGG | + | chr8.4:61295531-61295550 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 61295354 | 61296103 | 61295354 | ID=MS.gene23560 |
| chr8.4 | mRNA | 61295354 | 61296103 | 61295354 | ID=MS.gene23560.t1;Parent=MS.gene23560 |
| chr8.4 | exon | 61295354 | 61296103 | 61295354 | ID=MS.gene23560.t1.exon1;Parent=MS.gene23560.t1 |
| chr8.4 | CDS | 61295354 | 61296103 | 61295354 | ID=cds.MS.gene23560.t1;Parent=MS.gene23560.t1 |
| Gene Sequence |
| Protein sequence |
