AlfalfaGEDB | MS.gene23587

M. sativa cultivar XinJiangDaYe / MS.gene23587

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00096.29 PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23587.t1	XP_024628367.1	98.2	223	3	1	25	247	119	340	9.90E-131	476.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23587.t1	Q9SVY1	87.9	174	21	0	67	240	198	371	8.6e-99	361.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23587.t1	A0A396GKT8	98.2	223	3	1	25	247	119	340	7.2e-131	476.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23587.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23587.t1	MTR_1g093095	74.233	163	39	1	70	229	99	261	5.45e-94	278
MS.gene23587.t1	MTR_1g016010	36.620	142	79	5	78	217	62	194	1.41e-20	90.5
MS.gene23587.t1	MTR_1g112270	36.301	146	83	5	73	217	60	196	3.12e-20	89.7
MS.gene23587.t1	MTR_1g112270	36.301	146	83	5	73	217	71	207	3.28e-20	89.7
MS.gene23587.t1	MTR_1g094115	38.235	136	74	5	83	217	56	182	5.16e-20	89.0
MS.gene23587.t1	MTR_1g094115	36.301	146	83	5	73	217	63	199	5.73e-20	89.0
MS.gene23587.t1	MTR_4g059870	32.124	193	117	6	27	217	11	191	6.14e-20	88.6
MS.gene23587.t1	MTR_2g093960	35.616	146	85	4	73	217	48	185	1.48e-19	87.0
MS.gene23587.t1	MTR_8g017210	35.252	139	80	4	80	217	85	214	1.88e-19	87.4
MS.gene23587.t1	MTR_2g099990	34.247	146	86	4	73	217	62	198	3.74e-19	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23587.t1	AT3G57670	67.600	250	54	1	18	240	122	371	4.02e-120	347
MS.gene23587.t1	AT3G20880	65.823	237	66	4	17	240	175	409	2.03e-109	321
MS.gene23587.t1	AT1G51220	64.344	244	68	4	13	240	96	336	1.84e-107	314
MS.gene23587.t1	AT1G13290	62.389	226	58	6	4	226	42	243	4.49e-96	283
MS.gene23587.t1	AT1G34790	62.332	223	78	2	18	240	83	299	1.37e-95	282
MS.gene23587.t1	AT1G08290	57.258	248	86	5	7	234	85	332	3.46e-95	283
MS.gene23587.t1	AT1G34370	32.407	216	128	5	18	217	169	382	1.85e-27	110
MS.gene23587.t1	AT1G34370	32.407	216	128	5	18	217	169	382	1.85e-27	110
MS.gene23587.t1	AT1G34370	39.456	147	78	4	80	217	28	172	8.04e-27	105
MS.gene23587.t1	AT5G22890	38.621	145	82	3	80	217	211	355	1.12e-23	98.2

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Find 50 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGTATTGTTTGTG+TGG	0.602783	8.4:+60973169	MS.gene23587:CDS
AAAGACCATATTAAAGCCTT+TGG	0.344662	8.4:+60973220	MS.gene23587:CDS
AAAGCCTTTGGTTATGGTCA+TGG	0.479825	8.4:+60973232	MS.gene23587:CDS
AAGGGGCCAGATTCTCTAAA+AGG	0.343680	8.4:+60972929	MS.gene23587:CDS
ACACATTATAAGAGAAAGCA+TGG	0.564164	8.4:+60973064	MS.gene23587:CDS
ACACCTTCTCAAATTCTCAT+TGG	0.440374	8.4:+60971022	MS.gene23587:CDS
ACAGGACAAGAGAATTGCGT+AGG	0.670453	8.4:-60971046	None:intergenic
ACATGGATCTCAATACAGAA+AGG	0.588548	8.4:+60972910	MS.gene23587:CDS
AGAACACATGAGAAGAATTG+TGG	0.625082	8.4:+60973145	MS.gene23587:CDS
AGAAGAATTGTGGCAAAATA+TGG	0.329283	8.4:+60973155	MS.gene23587:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACCATATTAAAGCCTT+TGG	+	chr8.4:60973220-60973239	MS.gene23587:CDS	30.0%
AATATATGGGTGCATCTTTA+TGG	+	chr8.4:60972865-60972884	MS.gene23587:intron	30.0%
ACACATTATAAGAGAAAGCA+TGG	+	chr8.4:60973064-60973083	MS.gene23587:CDS	30.0%
ACAGAAAATCACAAGTCTAA+AGG	+	chr8.4:60972193-60972212	MS.gene23587:intron	30.0%
AGAAGAATTGTGGCAAAATA+TGG	+	chr8.4:60973155-60973174	MS.gene23587:CDS	30.0%
CATATTAAAGCCTTTGGTTA+TGG	+	chr8.4:60973226-60973245	MS.gene23587:CDS	30.0%
CCTTATATGTGTAGAAAATG+TGG	+	chr8.4:60973094-60973113	MS.gene23587:CDS	30.0%
CTCATCAAATTGCATAGAAA+TGG	+	chr8.4:60970916-60970935	MS.gene23587:CDS	30.0%
CTGAAAAATAAATGCAAGAC+TGG	+	chr8.4:60972459-60972478	MS.gene23587:intron	30.0%
GGAATAGTATATTCAACAGT+GGG	-	chr8.4:60972170-60972189	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	60970800	60973333	60970800	ID=MS.gene23587
chr8.4	mRNA	60970800	60973333	60970800	ID=MS.gene23587.t1;Parent=MS.gene23587
chr8.4	exon	60970800	60971105	60970800	ID=MS.gene23587.t1.exon1;Parent=MS.gene23587.t1
chr8.4	CDS	60970800	60971105	60970800	ID=cds.MS.gene23587.t1;Parent=MS.gene23587.t1
chr8.4	exon	60972896	60973333	60972896	ID=MS.gene23587.t1.exon2;Parent=MS.gene23587.t1
chr8.4	CDS	60972896	60973333	60972896	ID=cds.MS.gene23587.t1;Parent=MS.gene23587.t1

Gene Sequence

>MS.gene23587

ATGGAAAGGCATGGATATAATCATGATGATGATGATCTTGATGATGAAAATGTTACTGTTGCACTACAAATAGGGCTTCCTAGTAATTCTTCTTCTGGTCTTGGATCAAGGATGGTCTCATCAAATTGCATAGAAATGGCTGAAAAAGAGGAAGTTAATATGATTTCTGAACATCAACAACCTTTGGATAAGTTGAACAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACGCAATTCTCTTGTCCTGTGTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGGTATTTAGATCTTGAAAACTATGCTTTTGAGGTGTTGGCAATGGCATCACAACCTTATTACCATATTTTCCTAACTGCATCTAAAACCATGTTTTTACTTCTGTTTTTTCTTGTTCTCTATATAATTTTTCCCCTAAATTTAGAAAAGAAAATGAAAAATTGCATTAATATGTGTATCAAGAATCATAATGGTTTTTTTGTCTATATCCCTTTTGCATGTTTTTTTTTTCCTTTTTGTTAGTTTCAAATATCTGAACTTGAGTACTATTTGATCTGATCAGACTCAGCAGTACACTTTAATTATGTTGTGTTTTCTATAAAAACAAGAAACTATTCTTTCAACAAGTCTCTCTTATTATTCTACTTTATGTTACCTAGAACACTGTGCTGCACCAGTACTGCAAATCAATGAAAACAATGTTTCTCTCACTGTTCAGATGTTTCTCACTTCAACTTTTTCAGAGCACTGCATATGTAGTAGAAAACATATCTATTACTGATAAATATGTCTGTGATAAGATCATATATGGAACCTTTAAGCCATTCAAAATTATATATATATGGAACCTTCAATTGATGTCTCAGAAATAAAGAGCCAATAATTTAAGTATAATTAAGAAAAATTGTTTCATATCTGAACAAAATGAACCCTTTTGTAGAAATTGTTCTAAGTTTTGGTTACTGCTAAGTGCTAACTGGTCTTTATTTTATCATGGAAATTAGAAATATAATTTTTTTTGAAGAAGAAGAATTAGAAATATAATTAAAACCTTGTGCCAAAAATACTTGGTTTTCTATTGTGCCTGTCTTCAATTTTATGGTAATCATTAGATAGTTTCTTTATTTACTTTTTTTTTGGTAATGTTCTTTTGTTACTTTCTTTTGTTAGGGAAGTTTGAAACCACCATTCCTTGAATTTTTATATGCATCTTATGTGTGTGTTGAGTAAAACCTAAATATATACTCATCGTAATTTCTCTTTCTGCAAAGCTTTTGTTTTTGCATATTTTCCAAATTTGTACATTAGTTTCAAATGATGAACTTATTGTAGGTAAATTTGGCCCACTGTTGAATATACTATTCCATAACAGAAAATCACAAGTCTAAAGGTACAACACAAAATGTTTCAAGAGTACATATATATCATATATGCAGTCAGTAGTCACTACTCCCAACTTTCAATTCTAGTTCAATCATTTCTAGAAATAACAAAACTGGTGACAAGAAAATTAGAGAGATATTTCATTTTTGTGTCACTGGTTTTTGTGATTTTCTCTCTGCAGAACTCGACACAGTACTATTGAGGATAATTCTAAGCTCCCAATGATTTTGTCTAAATCACAGAAGTATAATCTGAAAAATAAATGCAAGACTGGATTTTAGATTTAAGTTAGTATTAATTGTCAACAAAATATTTAAGTCAGTTATTTCTTTTCTCTTCAAAAAAAAAAAAAAACTAGTTATTCCATTTATATAGGTTCGGTTTTTGTCTCCCCTTGATCAATATTCTCTCCGTCCCAAATTATATGACGTTGTGGGCATTTCATATGTATTAAAAAATGTAATTAATTTTGTGTGGAAAAAAGATATTATGAGTTGTTTTACAAAATTGTTCTTAATAAATGATATATTTAAGAGAAATTAGGGACGGATAAAAAACAATCACTAATTTCATGATATAATTTTGCAACAAGAAAACTAAAGAGGGATTTTATTTTTTCACAAATTTTTTTCATTAATTTAATTTTATTTAATAGTTAATATATGGGTGCATCTTTATGGATTTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCAGATTCTCTAAAAGGATCACAACCAACAGCAATGCTAAGGCTACCATGCTATTGTTGTGCACCAGGTTGCAAGCATAACATTGACCATCCTAGAGCAAAGCCTCTCAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATAAAACCTTATATGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTGTGTGGCTCAGATTTTAAACATAAAAGGTCTCTTAAAGACCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGTAGGGTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA

Protein sequence

>MS.gene23587.t1

MERHGYNHDDDDLDDENVTVALQIGLPSNSSSGLGSRMVSSNCIEMAEKEEVNMISEHQQPLDKLNNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEVGSEIEHDGGSSM