Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23587.t1 | XP_024628367.1 | 98.2 | 223 | 3 | 1 | 25 | 247 | 119 | 340 | 9.90E-131 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23587.t1 | Q9SVY1 | 87.9 | 174 | 21 | 0 | 67 | 240 | 198 | 371 | 8.6e-99 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23587.t1 | A0A396GKT8 | 98.2 | 223 | 3 | 1 | 25 | 247 | 119 | 340 | 7.2e-131 | 476.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23587.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23587.t1 | MTR_1g093095 | 74.233 | 163 | 39 | 1 | 70 | 229 | 99 | 261 | 5.45e-94 | 278 |
| MS.gene23587.t1 | MTR_1g016010 | 36.620 | 142 | 79 | 5 | 78 | 217 | 62 | 194 | 1.41e-20 | 90.5 |
| MS.gene23587.t1 | MTR_1g112270 | 36.301 | 146 | 83 | 5 | 73 | 217 | 60 | 196 | 3.12e-20 | 89.7 |
| MS.gene23587.t1 | MTR_1g112270 | 36.301 | 146 | 83 | 5 | 73 | 217 | 71 | 207 | 3.28e-20 | 89.7 |
| MS.gene23587.t1 | MTR_1g094115 | 38.235 | 136 | 74 | 5 | 83 | 217 | 56 | 182 | 5.16e-20 | 89.0 |
| MS.gene23587.t1 | MTR_1g094115 | 36.301 | 146 | 83 | 5 | 73 | 217 | 63 | 199 | 5.73e-20 | 89.0 |
| MS.gene23587.t1 | MTR_4g059870 | 32.124 | 193 | 117 | 6 | 27 | 217 | 11 | 191 | 6.14e-20 | 88.6 |
| MS.gene23587.t1 | MTR_2g093960 | 35.616 | 146 | 85 | 4 | 73 | 217 | 48 | 185 | 1.48e-19 | 87.0 |
| MS.gene23587.t1 | MTR_8g017210 | 35.252 | 139 | 80 | 4 | 80 | 217 | 85 | 214 | 1.88e-19 | 87.4 |
| MS.gene23587.t1 | MTR_2g099990 | 34.247 | 146 | 86 | 4 | 73 | 217 | 62 | 198 | 3.74e-19 | 86.3 |
| MS.gene23587.t1 | MTR_2g090745 | 35.616 | 146 | 84 | 5 | 73 | 217 | 23 | 159 | 4.51e-19 | 85.9 |
| MS.gene23587.t1 | MTR_2g099990 | 34.783 | 138 | 80 | 4 | 81 | 217 | 1 | 129 | 2.16e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23587.t1 | AT3G57670 | 67.600 | 250 | 54 | 1 | 18 | 240 | 122 | 371 | 4.02e-120 | 347 |
| MS.gene23587.t1 | AT3G20880 | 65.823 | 237 | 66 | 4 | 17 | 240 | 175 | 409 | 2.03e-109 | 321 |
| MS.gene23587.t1 | AT1G51220 | 64.344 | 244 | 68 | 4 | 13 | 240 | 96 | 336 | 1.84e-107 | 314 |
| MS.gene23587.t1 | AT1G13290 | 62.389 | 226 | 58 | 6 | 4 | 226 | 42 | 243 | 4.49e-96 | 283 |
| MS.gene23587.t1 | AT1G34790 | 62.332 | 223 | 78 | 2 | 18 | 240 | 83 | 299 | 1.37e-95 | 282 |
| MS.gene23587.t1 | AT1G08290 | 57.258 | 248 | 86 | 5 | 7 | 234 | 85 | 332 | 3.46e-95 | 283 |
| MS.gene23587.t1 | AT1G34370 | 32.407 | 216 | 128 | 5 | 18 | 217 | 169 | 382 | 1.85e-27 | 110 |
| MS.gene23587.t1 | AT1G34370 | 32.407 | 216 | 128 | 5 | 18 | 217 | 169 | 382 | 1.85e-27 | 110 |
| MS.gene23587.t1 | AT1G34370 | 39.456 | 147 | 78 | 4 | 80 | 217 | 28 | 172 | 8.04e-27 | 105 |
| MS.gene23587.t1 | AT5G22890 | 38.621 | 145 | 82 | 3 | 80 | 217 | 211 | 355 | 1.12e-23 | 98.2 |
| MS.gene23587.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 78 | 217 | 84 | 216 | 7.27e-21 | 91.3 |
| MS.gene23587.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 78 | 217 | 84 | 216 | 7.27e-21 | 91.3 |
| MS.gene23587.t1 | AT1G55110 | 38.028 | 142 | 77 | 6 | 78 | 217 | 84 | 216 | 7.27e-21 | 91.3 |
| MS.gene23587.t1 | AT1G14580 | 32.609 | 184 | 101 | 6 | 48 | 217 | 31 | 205 | 2.05e-20 | 90.1 |
| MS.gene23587.t1 | AT1G14580 | 32.609 | 184 | 101 | 6 | 48 | 217 | 31 | 205 | 2.05e-20 | 90.1 |
| MS.gene23587.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 78 | 217 | 75 | 206 | 2.28e-20 | 90.1 |
| MS.gene23587.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 78 | 217 | 75 | 206 | 2.28e-20 | 90.1 |
| MS.gene23587.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 78 | 217 | 75 | 206 | 2.28e-20 | 90.1 |
| MS.gene23587.t1 | AT2G02080 | 36.879 | 141 | 79 | 4 | 78 | 217 | 75 | 206 | 2.28e-20 | 90.1 |
| MS.gene23587.t1 | AT1G14580 | 32.787 | 183 | 100 | 6 | 49 | 217 | 46 | 219 | 2.30e-20 | 89.7 |
| MS.gene23587.t1 | AT2G02070 | 36.301 | 146 | 83 | 4 | 73 | 217 | 68 | 204 | 2.37e-20 | 90.1 |
| MS.gene23587.t1 | AT2G02070 | 36.301 | 146 | 83 | 4 | 73 | 217 | 68 | 204 | 2.37e-20 | 90.1 |
| MS.gene23587.t1 | AT5G03150 | 33.333 | 165 | 93 | 5 | 79 | 242 | 75 | 223 | 6.67e-20 | 88.6 |
| MS.gene23587.t1 | AT2G02080 | 36.957 | 138 | 77 | 4 | 81 | 217 | 1 | 129 | 7.60e-20 | 88.2 |
| MS.gene23587.t1 | AT2G02080 | 36.957 | 138 | 77 | 4 | 81 | 217 | 1 | 129 | 7.60e-20 | 88.2 |
| MS.gene23587.t1 | AT5G66730 | 35.915 | 142 | 79 | 5 | 78 | 217 | 53 | 184 | 1.08e-18 | 85.1 |
| MS.gene23587.t1 | AT5G44160 | 33.133 | 166 | 93 | 5 | 80 | 244 | 21 | 169 | 1.47e-18 | 84.3 |
| MS.gene23587.t1 | AT5G44160 | 32.934 | 167 | 94 | 5 | 79 | 244 | 59 | 208 | 1.61e-18 | 84.3 |
| MS.gene23587.t1 | AT1G03840 | 34.247 | 146 | 86 | 5 | 73 | 217 | 55 | 191 | 2.88e-18 | 84.0 |
| MS.gene23587.t1 | AT1G03840 | 34.247 | 146 | 86 | 5 | 73 | 217 | 57 | 193 | 3.18e-18 | 84.0 |
| MS.gene23587.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 80 | 217 | 62 | 192 | 3.34e-18 | 83.6 |
| MS.gene23587.t1 | AT3G45260 | 36.691 | 139 | 79 | 4 | 80 | 217 | 62 | 192 | 3.34e-18 | 83.6 |
| MS.gene23587.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 80 | 213 | 58 | 185 | 6.49e-18 | 82.8 |
| MS.gene23587.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 80 | 213 | 67 | 194 | 7.83e-18 | 82.4 |
| MS.gene23587.t1 | AT5G60470 | 35.294 | 136 | 78 | 4 | 80 | 213 | 63 | 190 | 8.05e-18 | 82.4 |
| MS.gene23587.t1 | AT4G02670 | 33.562 | 146 | 88 | 5 | 73 | 217 | 71 | 208 | 1.60e-17 | 81.3 |
| MS.gene23587.t1 | AT4G02670 | 33.562 | 146 | 88 | 5 | 73 | 217 | 69 | 206 | 1.77e-17 | 81.3 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 86 | 223 | 1.99e-17 | 81.6 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 86 | 223 | 1.99e-17 | 81.6 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 81 | 218 | 2.01e-17 | 81.3 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 87 | 224 | 2.23e-17 | 81.3 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 67 | 204 | 2.25e-17 | 81.3 |
| MS.gene23587.t1 | AT3G13810 | 34.014 | 147 | 86 | 5 | 73 | 217 | 73 | 210 | 2.72e-17 | 80.9 |
| MS.gene23587.t1 | AT3G50700 | 33.544 | 158 | 85 | 6 | 78 | 233 | 55 | 194 | 3.10e-17 | 80.9 |
| MS.gene23587.t1 | AT1G25250 | 28.758 | 153 | 99 | 5 | 64 | 213 | 17 | 162 | 1.46e-13 | 69.7 |
| MS.gene23587.t1 | AT1G25250 | 30.935 | 139 | 86 | 5 | 78 | 213 | 54 | 185 | 1.62e-13 | 69.7 |
| MS.gene23587.t1 | AT1G68130 | 31.655 | 139 | 84 | 5 | 78 | 213 | 62 | 192 | 7.13e-13 | 67.8 |
| MS.gene23587.t1 | AT2G01940 | 30.935 | 139 | 85 | 5 | 78 | 213 | 65 | 195 | 1.80e-11 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGTTGCACTACAAAT+AGG | 0.213717 | 8.4:+60970851 | MS.gene23587:CDS |
| CTTCCTAGTAATTCTTCTTC+TGG | 0.261541 | 8.4:+60970875 | MS.gene23587:CDS |
| AGTAATTCTTCTTCTGGTCT+TGG | 0.280359 | 8.4:+60970881 | MS.gene23587:CDS |
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8.4:+60973241 | MS.gene23587:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8.4:+60973226 | MS.gene23587:CDS |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8.4:+60973155 | MS.gene23587:CDS |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8.4:+60972929 | MS.gene23587:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8.4:+60973220 | MS.gene23587:CDS |
| CTTCTTCTGGTCTTGGATCA+AGG | 0.347469 | 8.4:+60970888 | MS.gene23587:CDS |
| TTCTGAACATCAACAACCTT+TGG | 0.351430 | 8.4:+60970964 | MS.gene23587:CDS |
| TTACTGTTGCACTACAAATA+GGG | 0.383274 | 8.4:+60970852 | MS.gene23587:CDS |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8.4:-60973225 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8.4:+60970916 | MS.gene23587:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8.4:+60971084 | MS.gene23587:CDS |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8.4:+60973122 | MS.gene23587:CDS |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8.4:+60971022 | MS.gene23587:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8.4:+60972980 | MS.gene23587:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.475729 | 8.4:+60970993 | MS.gene23587:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8.4:+60973232 | MS.gene23587:CDS |
| TTCTGGTCTTGGATCAAGGA+TGG | 0.485959 | 8.4:+60970892 | MS.gene23587:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8.4:-60973021 | None:intergenic |
| CAGATGCATATGTGGGGACA+TGG | 0.509465 | 8.4:+60972893 | MS.gene23587:intron |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8.4:-60973025 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8.4:-60971019 | None:intergenic |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8.4:+60973094 | MS.gene23587:CDS |
| AGACCAGAAGAAGAATTACT+AGG | 0.533564 | 8.4:-60970878 | None:intergenic |
| CATGGATCTCAATACAGAAA+GGG | 0.536031 | 8.4:+60972911 | MS.gene23587:CDS |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8.4:+60973274 | MS.gene23587:CDS |
| GACAAGAGAATGGAAAGGCA+TGG | 0.561442 | 8.4:+60970791 | None:intergenic |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8.4:+60973275 | MS.gene23587:CDS |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8.4:+60973064 | MS.gene23587:CDS |
| TTGTTGTTCAACTTATCCAA+AGG | 0.565952 | 8.4:-60970980 | None:intergenic |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8.4:-60972959 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8.4:+60972954 | MS.gene23587:CDS |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8.4:-60973037 | None:intergenic |
| ACATGGATCTCAATACAGAA+AGG | 0.588548 | 8.4:+60972910 | MS.gene23587:CDS |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8.4:+60973169 | MS.gene23587:CDS |
| GGGTCAGAAATTGAACATGA+TGG | 0.603687 | 8.4:+60973295 | MS.gene23587:CDS |
| TAGAAGACAAGAGAATGGAA+AGG | 0.616360 | 8.4:+60970786 | None:intergenic |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8.4:+60973115 | MS.gene23587:CDS |
| ATGGATCTCAATACAGAAAG+GGG | 0.624745 | 8.4:+60972912 | MS.gene23587:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8.4:+60973145 | MS.gene23587:CDS |
| TCAATGTTATGCTTGCAACC+TGG | 0.646006 | 8.4:-60972998 | None:intergenic |
| TCAGAAATTGAACATGATGG+TGG | 0.646397 | 8.4:+60973298 | MS.gene23587:CDS |
| TTGGATAAGTTGAACAACAA+GGG | 0.662388 | 8.4:+60970983 | MS.gene23587:CDS |
| TTTGGATAAGTTGAACAACA+AGG | 0.664103 | 8.4:+60970982 | MS.gene23587:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8.4:-60973236 | None:intergenic |
| ACAGGACAAGAGAATTGCGT+AGG | 0.670453 | 8.4:-60971046 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8.4:-60972980 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.690488 | 8.4:-60971025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTCAAAATTATATATATA+TGG | + | chr8.4:60971647-60971666 | MS.gene23587:intron | 10.0% |
| !! | CTTAATTATACTTAAATTAT+TGG | - | chr8.4:60971704-60971723 | None:intergenic | 10.0% |
| !!! | CATATATATATAATTTTGAA+TGG | - | chr8.4:60971649-60971668 | None:intergenic | 10.0% |
| !!! | TTCTTTATTTACTTTTTTTT+TGG | + | chr8.4:60971942-60971961 | MS.gene23587:intron | 10.0% |
| !! | GATATATTTAAGAGAAATTA+GGG | + | chr8.4:60972730-60972749 | MS.gene23587:intron | 15.0% |
| !! | TGATATATTTAAGAGAAATT+AGG | + | chr8.4:60972729-60972748 | MS.gene23587:intron | 15.0% |
| !!! | AAAATGTAATTAATTTTGTG+TGG | + | chr8.4:60972662-60972681 | MS.gene23587:intron | 15.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | - | chr8.4:60971239-60971258 | None:intergenic | 15.0% |
| !!! | CATTTTCTTTTCTAAATTTA+GGG | - | chr8.4:60971240-60971259 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTTTCTAAATTT+AGG | - | chr8.4:60971241-60971260 | None:intergenic | 15.0% |
| !! | AAAAAACAGAAGTAAAAACA+TGG | - | chr8.4:60971195-60971214 | None:intergenic | 20.0% |
| !! | AAGATGCATATAAAAATTCA+AGG | - | chr8.4:60972018-60972037 | None:intergenic | 20.0% |
| !! | ACTAGTTATTCCATTTATAT+AGG | + | chr8.4:60972561-60972580 | MS.gene23587:intron | 20.0% |
| !! | ATTACGATGAGTATATATTT+AGG | - | chr8.4:60972060-60972079 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAACATGCAAAA+GGG | - | chr8.4:60971316-60971335 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | - | chr8.4:60971757-60971776 | None:intergenic | 20.0% |
| !! | TTATTCCATTTATATAGGTT+CGG | + | chr8.4:60972566-60972585 | MS.gene23587:intron | 20.0% |
| !! | TTGAAACTAATGTACAAATT+TGG | - | chr8.4:60972119-60972138 | None:intergenic | 20.0% |
| !!! | AATAGAAAACCAAGTATTTT+TGG | - | chr8.4:60971885-60971904 | None:intergenic | 20.0% |
| !!! | ATTTCTAGAAATAACAAAAC+TGG | + | chr8.4:60972301-60972320 | MS.gene23587:intron | 20.0% |
| !!! | GATATTTGAAACTAACAAAA+AGG | - | chr8.4:60971338-60971357 | None:intergenic | 20.0% |
| !!! | TATAATTTTGAATGGCTTAA+AGG | - | chr8.4:60971641-60971660 | None:intergenic | 20.0% |
| !!! | TTTGTTACTTTCTTTTGTTA+GGG | + | chr8.4:60971974-60971993 | MS.gene23587:intron | 20.0% |
| !!! | TTTTGTTACTTTCTTTTGTT+AGG | + | chr8.4:60971973-60971992 | MS.gene23587:intron | 20.0% |
| ! | AAAAACCGAACCTATATAAA+TGG | - | chr8.4:60972574-60972593 | None:intergenic | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | + | chr8.4:60973169-60973188 | MS.gene23587:CDS | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | + | chr8.4:60971275-60971294 | MS.gene23587:intron | 25.0% |
| ! | ATTACCATAAAATTGAAGAC+AGG | - | chr8.4:60971911-60971930 | None:intergenic | 25.0% |
| ! | ATTGAACTAGAATTGAAAGT+TGG | - | chr8.4:60972280-60972299 | None:intergenic | 25.0% |
| ! | CTTAGAACAATTTCTACAAA+AGG | - | chr8.4:60971758-60971777 | None:intergenic | 25.0% |
| ! | GAACTTATTGTAGGTAAATT+TGG | + | chr8.4:60972144-60972163 | MS.gene23587:intron | 25.0% |
| ! | GCATATAAAAATTCAAGGAA+TGG | - | chr8.4:60972013-60972032 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAACATGCAAA+AGG | - | chr8.4:60971317-60971336 | None:intergenic | 25.0% |
| ! | GTGATTTAGACAAAATCATT+GGG | - | chr8.4:60972428-60972447 | None:intergenic | 25.0% |
| ! | GTTAGGAAAATATGGTAATA+AGG | - | chr8.4:60971161-60971180 | None:intergenic | 25.0% |
| ! | TATAAAAATTCAAGGAATGG+TGG | - | chr8.4:60972010-60972029 | None:intergenic | 25.0% |
| ! | TATTTAAGAGAAATTAGGGA+CGG | + | chr8.4:60972734-60972753 | MS.gene23587:intron | 25.0% |
| ! | TCAAATGATGAACTTATTGT+AGG | + | chr8.4:60972135-60972154 | MS.gene23587:intron | 25.0% |
| ! | TGTGATTTAGACAAAATCAT+TGG | - | chr8.4:60972429-60972448 | None:intergenic | 25.0% |
| ! | TTGAACTAGAATTGAAAGTT+GGG | - | chr8.4:60972279-60972298 | None:intergenic | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | + | chr8.4:60973191-60973210 | MS.gene23587:CDS | 25.0% |
| !!! | AACTGGTCTTTATTTTATCA+TGG | + | chr8.4:60971799-60971818 | MS.gene23587:intron | 25.0% |
| !!! | ATATTTCATTTTTGTGTCAC+TGG | + | chr8.4:60972343-60972362 | MS.gene23587:intron | 25.0% |
| !!! | GTAGAAATTGTTCTAAGTTT+TGG | + | chr8.4:60971761-60971780 | MS.gene23587:intron | 25.0% |
| AAAGACCATATTAAAGCCTT+TGG | + | chr8.4:60973220-60973239 | MS.gene23587:CDS | 30.0% | |
| AATATATGGGTGCATCTTTA+TGG | + | chr8.4:60972865-60972884 | MS.gene23587:intron | 30.0% | |
| ACACATTATAAGAGAAAGCA+TGG | + | chr8.4:60973064-60973083 | MS.gene23587:CDS | 30.0% | |
| ACAGAAAATCACAAGTCTAA+AGG | + | chr8.4:60972193-60972212 | MS.gene23587:intron | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | + | chr8.4:60973155-60973174 | MS.gene23587:CDS | 30.0% | |
| CATATTAAAGCCTTTGGTTA+TGG | + | chr8.4:60973226-60973245 | MS.gene23587:CDS | 30.0% | |
| CCTTATATGTGTAGAAAATG+TGG | + | chr8.4:60973094-60973113 | MS.gene23587:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | + | chr8.4:60970916-60970935 | MS.gene23587:CDS | 30.0% | |
| CTGAAAAATAAATGCAAGAC+TGG | + | chr8.4:60972459-60972478 | MS.gene23587:intron | 30.0% | |
| GGAATAGTATATTCAACAGT+GGG | - | chr8.4:60972170-60972189 | None:intergenic | 30.0% | |
| GTCTGTGATAAGATCATATA+TGG | + | chr8.4:60971613-60971632 | MS.gene23587:intron | 30.0% | |
| TAGATGCAGTTAGGAAAATA+TGG | - | chr8.4:60971169-60971188 | None:intergenic | 30.0% | |
| TGCAACAAGAAAACTAAAGA+GGG | + | chr8.4:60972791-60972810 | MS.gene23587:intron | 30.0% | |
| TGGAATAGTATATTCAACAG+TGG | - | chr8.4:60972171-60972190 | None:intergenic | 30.0% | |
| TTACTGTTGCACTACAAATA+GGG | + | chr8.4:60970852-60970871 | MS.gene23587:CDS | 30.0% | |
| TTGCAACAAGAAAACTAAAG+AGG | + | chr8.4:60972790-60972809 | MS.gene23587:intron | 30.0% | |
| ! | AGACTTGTGATTTTCTGTTA+TGG | - | chr8.4:60972191-60972210 | None:intergenic | 30.0% |
| ! | CATAACCAAAGGCTTTAATA+TGG | - | chr8.4:60973228-60973247 | None:intergenic | 30.0% |
| ! | CCACATTTTCTACACATATA+AGG | - | chr8.4:60973097-60973116 | None:intergenic | 30.0% |
| ! | TCTTGAAAACTATGCTTTTG+AGG | + | chr8.4:60971115-60971134 | MS.gene23587:intron | 30.0% |
| ! | TTGGATAAGTTGAACAACAA+GGG | + | chr8.4:60970983-60971002 | MS.gene23587:CDS | 30.0% |
| ! | TTGTTGTTCAACTTATCCAA+AGG | - | chr8.4:60970983-60971002 | None:intergenic | 30.0% |
| ! | TTTGGATAAGTTGAACAACA+AGG | + | chr8.4:60970982-60971001 | MS.gene23587:CDS | 30.0% |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | - | chr8.4:60973040-60973059 | None:intergenic | 30.0% |
| !! | ATTTCTGAGACATCAATTGA+AGG | - | chr8.4:60971675-60971694 | None:intergenic | 30.0% |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | - | chr8.4:60971501-60971520 | None:intergenic | 30.0% |
| AACCTTGTGCCAAAAATACT+TGG | + | chr8.4:60971873-60971892 | MS.gene23587:intron | 35.0% | |
| ACACCTTCTCAAATTCTCAT+TGG | + | chr8.4:60971022-60971041 | MS.gene23587:CDS | 35.0% | |
| ACATGGATCTCAATACAGAA+AGG | + | chr8.4:60972910-60972929 | MS.gene23587:CDS | 35.0% | |
| ACGGAGAGAATATTGATCAA+GGG | - | chr8.4:60972602-60972621 | None:intergenic | 35.0% | |
| AGAACACATGAGAAGAATTG+TGG | + | chr8.4:60973145-60973164 | MS.gene23587:CDS | 35.0% | |
| AGACCAGAAGAAGAATTACT+AGG | - | chr8.4:60970881-60970900 | None:intergenic | 35.0% | |
| AGTAATTCTTCTTCTGGTCT+TGG | + | chr8.4:60970881-60970900 | MS.gene23587:CDS | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | + | chr8.4:60972912-60972931 | MS.gene23587:CDS | 35.0% | |
| CAACAGATACAACAATCTTC+AGG | + | chr8.4:60971084-60971103 | MS.gene23587:CDS | 35.0% | |
| CAACGTCATATAATTTGGGA+CGG | - | chr8.4:60972621-60972640 | None:intergenic | 35.0% | |
| CATAGAAATGGCTGAAAAAG+AGG | + | chr8.4:60970928-60970947 | MS.gene23587:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | + | chr8.4:60972911-60972930 | MS.gene23587:CDS | 35.0% | |
| CCCAAATTATATGACGTTGT+GGG | + | chr8.4:60972622-60972641 | MS.gene23587:intron | 35.0% | |
| CCCACAACGTCATATAATTT+GGG | - | chr8.4:60972625-60972644 | None:intergenic | 35.0% | |
| CTTCCTAGTAATTCTTCTTC+TGG | + | chr8.4:60970875-60970894 | MS.gene23587:CDS | 35.0% | |
| GTTACTGTTGCACTACAAAT+AGG | + | chr8.4:60970851-60970870 | MS.gene23587:CDS | 35.0% | |
| TCAGAAATTGAACATGATGG+TGG | + | chr8.4:60973298-60973317 | MS.gene23587:CDS | 35.0% | |
| TCCCAAATTATATGACGTTG+TGG | + | chr8.4:60972621-60972640 | MS.gene23587:intron | 35.0% | |
| TGCAAGAAGAAGATGAAGTA+GGG | + | chr8.4:60973275-60973294 | MS.gene23587:CDS | 35.0% | |
| TTCTGAACATCAACAACCTT+TGG | + | chr8.4:60970964-60970983 | MS.gene23587:CDS | 35.0% | |
| TTGCAAGAAGAAGATGAAGT+AGG | + | chr8.4:60973274-60973293 | MS.gene23587:CDS | 35.0% | |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | - | chr8.4:60971022-60971041 | None:intergenic | 35.0% |
| ! | GATTTTCAGATGCATATGTG+GGG | + | chr8.4:60972887-60972906 | MS.gene23587:intron | 35.0% |
| ! | GGATTTTCAGATGCATATGT+GGG | + | chr8.4:60972886-60972905 | MS.gene23587:intron | 35.0% |
| ! | TGGATTTTCAGATGCATATG+TGG | + | chr8.4:60972885-60972904 | MS.gene23587:intron | 35.0% |
| ! | TGTGCCTGTCTTCAATTTTA+TGG | + | chr8.4:60971904-60971923 | MS.gene23587:intron | 35.0% |
| !! | TGTGATCCTTTTAGAGAATC+TGG | - | chr8.4:60972938-60972957 | None:intergenic | 35.0% |
| !!! | AAACTATGCTTTTGAGGTGT+TGG | + | chr8.4:60971121-60971140 | MS.gene23587:intron | 35.0% |
| !!! | AACCAAGTATTTTTGGCACA+AGG | - | chr8.4:60971878-60971897 | None:intergenic | 35.0% |
| !!! | ACATGGTTTTAGATGCAGTT+AGG | - | chr8.4:60971178-60971197 | None:intergenic | 35.0% |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | - | chr8.4:60971067-60971086 | None:intergenic | 35.0% |
| AAAGCCTTTGGTTATGGTCA+TGG | + | chr8.4:60973232-60973251 | MS.gene23587:CDS | 40.0% | |
| AACTCGACACAGTACTATTG+AGG | + | chr8.4:60972389-60972408 | MS.gene23587:intron | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | + | chr8.4:60973122-60973141 | MS.gene23587:CDS | 40.0% | |
| CGGAGAGAATATTGATCAAG+GGG | - | chr8.4:60972601-60972620 | None:intergenic | 40.0% | |
| GACGGAGAGAATATTGATCA+AGG | - | chr8.4:60972603-60972622 | None:intergenic | 40.0% | |
| GCCCACAACGTCATATAATT+TGG | - | chr8.4:60972626-60972645 | None:intergenic | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | - | chr8.4:60971028-60971047 | None:intergenic | 40.0% | |
| GGCAAATCATTTGCAGTGAA+AGG | + | chr8.4:60973115-60973134 | MS.gene23587:CDS | 40.0% | |
| GGGTCAGAAATTGAACATGA+TGG | + | chr8.4:60973295-60973314 | MS.gene23587:CDS | 40.0% | |
| TCAATGTTATGCTTGCAACC+TGG | - | chr8.4:60973001-60973020 | None:intergenic | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | + | chr8.4:60970993-60971012 | MS.gene23587:CDS | 40.0% | |
| AAGGGGCCAGATTCTCTAAA+AGG | + | chr8.4:60972929-60972948 | MS.gene23587:CDS | 45.0% | |
| ACAGGACAAGAGAATTGCGT+AGG | - | chr8.4:60971049-60971068 | None:intergenic | 45.0% | |
| AGCACCATGACCATAACCAA+AGG | - | chr8.4:60973239-60973258 | None:intergenic | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | + | chr8.4:60972954-60972973 | MS.gene23587:CDS | 45.0% | |
| GGTTACTGCTAAGTGCTAAC+TGG | + | chr8.4:60971782-60971801 | MS.gene23587:intron | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | + | chr8.4:60973241-60973260 | MS.gene23587:CDS | 45.0% |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | - | chr8.4:60973028-60973047 | None:intergenic | 45.0% |
| !! | CTTCTTCTGGTCTTGGATCA+AGG | + | chr8.4:60970888-60970907 | MS.gene23587:CDS | 45.0% |
| !! | TTCTGGTCTTGGATCAAGGA+TGG | + | chr8.4:60970892-60970911 | MS.gene23587:CDS | 45.0% |
| !!! | TGCTTTTGAGGTGTTGGCAA+TGG | + | chr8.4:60971127-60971146 | MS.gene23587:intron | 45.0% |
| !! | TTATTTAATAGTTAATATAT+GGG | + | chr8.4:60972852-60972871 | MS.gene23587:intron | 5.0% |
| !! | TTTATTTAATAGTTAATATA+TGG | + | chr8.4:60972851-60972870 | MS.gene23587:intron | 5.0% |
| CAGATGCATATGTGGGGACA+TGG | + | chr8.4:60972893-60972912 | MS.gene23587:intron | 50.0% | |
| CCATGCTATTGTTGTGCACC+AGG | + | chr8.4:60972980-60972999 | MS.gene23587:CDS | 50.0% | |
| CCTGGTGCACAACAATAGCA+TGG | - | chr8.4:60972983-60973002 | None:intergenic | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | - | chr8.4:60972962-60972981 | None:intergenic | 50.0% |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | - | chr8.4:60973024-60973043 | None:intergenic | 50.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | - | chr8.4:60971482-60971501 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60970800 | 60973333 | 60970800 | ID=MS.gene23587 |
| chr8.4 | mRNA | 60970800 | 60973333 | 60970800 | ID=MS.gene23587.t1;Parent=MS.gene23587 |
| chr8.4 | exon | 60970800 | 60971105 | 60970800 | ID=MS.gene23587.t1.exon1;Parent=MS.gene23587.t1 |
| chr8.4 | CDS | 60970800 | 60971105 | 60970800 | ID=cds.MS.gene23587.t1;Parent=MS.gene23587.t1 |
| chr8.4 | exon | 60972896 | 60973333 | 60972896 | ID=MS.gene23587.t1.exon2;Parent=MS.gene23587.t1 |
| chr8.4 | CDS | 60972896 | 60973333 | 60972896 | ID=cds.MS.gene23587.t1;Parent=MS.gene23587.t1 |
| Gene Sequence |
| Protein sequence |
