AlfalfaGEDB | MS.gene23597

M. sativa cultivar XinJiangDaYe / MS.gene23597

KEGG: K08064
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005667 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23597.t1	XP_013445060.1	92.9	294	15	2	1	288	1	294	6.80E-147	530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23597.t1	Q9LXV5	38.2	262	122	8	2	233	5	256	1.9e-28	127.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23597.t1	A0A072TPE2	92.9	294	15	2	1	288	1	294	4.9e-147	530.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23597.t1	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23597.t1	MTR_8g037270	92.857	294	15	2	1	288	1	294	0.0	556
MS.gene23597.t1	MTR_3g061510	43.162	234	93	8	21	225	20	242	6.51e-46	157
MS.gene23597.t1	MTR_3g061510	43.162	234	93	8	21	225	40	262	8.36e-46	157
MS.gene23597.t1	MTR_2g030170	71.111	90	26	0	122	211	86	175	9.45e-37	130
MS.gene23597.t1	MTR_8g019540	43.415	205	92	9	76	277	95	278	5.01e-35	129
MS.gene23597.t1	MTR_2g041090	48.000	150	70	4	109	253	33	179	2.49e-34	124
MS.gene23597.t1	MTR_2g030170	73.494	83	22	0	129	211	126	208	4.09e-34	124
MS.gene23597.t1	MTR_2g099490	53.125	128	55	3	110	234	134	259	2.43e-32	122
MS.gene23597.t1	MTR_2g099490	47.887	142	57	3	110	234	134	275	3.83e-31	119
MS.gene23597.t1	MTR_7g106450	50.400	125	48	4	93	214	118	231	2.27e-30	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23597.t1	AT5G12840	40.254	236	108	7	27	233	25	256	2.37e-41	144
MS.gene23597.t1	AT5G12840	40.254	236	108	7	27	233	25	256	2.37e-41	144
MS.gene23597.t1	AT5G12840	40.254	236	108	7	27	233	25	256	2.37e-41	144
MS.gene23597.t1	AT5G12840	40.426	235	108	7	27	233	25	255	3.46e-41	144
MS.gene23597.t1	AT5G12840	40.426	235	108	7	27	233	25	255	3.46e-41	144
MS.gene23597.t1	AT3G20910	49.660	147	71	2	93	236	108	254	8.12e-40	141
MS.gene23597.t1	AT1G30500	43.976	166	77	4	74	231	33	190	3.48e-33	120
MS.gene23597.t1	AT1G30500	43.373	166	74	4	74	231	33	186	4.44e-32	117
MS.gene23597.t1	AT1G72830	55.172	116	47	4	110	220	137	252	4.84e-31	119
MS.gene23597.t1	AT2G34720	38.462	195	92	6	66	247	8	187	1.38e-30	114

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Find 67 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTGAAAGGATGCC+AGG	0.439397	8.4:-60683935	None:intergenic
AAACAGGAGGGTGACTTCTT+TGG	0.313426	8.4:-60680830	MS.gene23597:CDS
AAAGCTGTGAAAGGATGCCA+GGG	0.629084	8.4:-60683934	None:intergenic
AACAATACTGGTGCAACATC+GGG	0.490937	8.4:-60680977	MS.gene23597:CDS
AACATGCTTTGAGAAGGGCA+AGG	0.629479	8.4:-60681069	MS.gene23597:CDS
AATTCGCAGACGGAACTTGT+TGG	0.463333	8.4:-60683084	MS.gene23597:CDS
ACAAGTTCCGTCTGCGAATT+CGG	0.283090	8.4:+60683087	None:intergenic
ACAGGCAAATGGAAAACAGG+AGG	0.631076	8.4:-60680843	MS.gene23597:CDS
ACAGGGCCTGTTTGATGTTT+CGG	0.328192	8.4:+60683145	None:intergenic
ACATGCTTTGAGAAGGGCAA+GGG	0.570857	8.4:-60681068	MS.gene23597:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGAATCTTGTGCAAA+AGG	+	chr8.4:60682849-60682868	None:intergenic	30.0%
AACAATCACAGTAAATAAGG+GGG	+	chr8.4:60681227-60681246	None:intergenic	30.0%
AAGATTAAGCAGTTTGGAAA+AGG	-	chr8.4:60683355-60683374	MS.gene23597:intron	30.0%
ACGATTACAATGTACTAACA+TGG	+	chr8.4:60682767-60682786	None:intergenic	30.0%
ACTATGATTGCTTATAATCC+AGG	-	chr8.4:60681315-60681334	MS.gene23597:intron	30.0%
ACTGTGATTGTTCATAATCA+AGG	-	chr8.4:60681235-60681254	MS.gene23597:intron	30.0%
AGATACAAGTAACTTCTTGA+AGG	-	chr8.4:60681350-60681369	MS.gene23597:intron	30.0%
ATATTACACACAAAGAAACC+CGG	+	chr8.4:60682541-60682560	None:intergenic	30.0%
ATCATGATGTGTACATATCT+TGG	+	chr8.4:60681693-60681712	None:intergenic	30.0%
ATGGAGATCAAAAGTTCAAT+TGG	+	chr8.4:60681291-60681310	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	60680796	60683942	60680796	ID=MS.gene23597
chr8.4	mRNA	60680796	60683942	60680796	ID=MS.gene23597.t1;Parent=MS.gene23597
chr8.4	exon	60683730	60683942	60683730	ID=MS.gene23597.t1.exon1;Parent=MS.gene23597.t1
chr8.4	CDS	60683730	60683942	60683730	ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1
chr8.4	exon	60683074	60683172	60683074	ID=MS.gene23597.t1.exon2;Parent=MS.gene23597.t1
chr8.4	CDS	60683074	60683172	60683074	ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1
chr8.4	exon	60682932	60683000	60682932	ID=MS.gene23597.t1.exon3;Parent=MS.gene23597.t1
chr8.4	CDS	60682932	60683000	60682932	ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1
chr8.4	exon	60681499	60681663	60681499	ID=MS.gene23597.t1.exon4;Parent=MS.gene23597.t1
chr8.4	CDS	60681499	60681663	60681499	ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1
chr8.4	exon	60680796	60681116	60680796	ID=MS.gene23597.t1.exon5;Parent=MS.gene23597.t1
chr8.4	CDS	60680796	60681116	60680796	ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1

Gene Sequence

>MS.gene23597

ATGCCAGGGAAACCAGAAACTGATGATTGGAGAATAAAGCAAAGTGAGCAGGTTCAGTTGCCATCTTCCATTTACTCTCATCATCAGCCTTGGTGGCTTGAAAATGGCTCCAAACCATCTTCAGCTGATCAGATAAATGGTTCAATCATGAATAATGTCACACATTCAGAGCCTTTGGTTTCTCCTTCACTTTCTTTAACTGATAACTCAGGTGTCTGTATTTTTATGCCTCTTCAAACTTTTTCTTGTTTATAATGTATTTTTGTTATTACTTCCTTTTGCATACACTTCTTGGCTAGCTTGCTTGTGTTATCTGTTTCGATATATTAAGTTGACATAATTTTAGGCCATTTGCAATTTGGCATCTAGATTTGTCAAACCAATTGGACTTTTTCATCTTAATGAACACATAACATTAAAGCATTTTACCCCCTTATTTACTGTGATTGTTCATAATCAAGGGAAACTTATTTGGCATCTAGATTTGTCAAACCAATTGAACTTTTGATCTCCATGTTTACTATGATTGCTTATAATCCAGGGAAACTTATGGAAGATACAAGTAACTTCTTGAAGGAAATTTCACTCAATGATATTCTAGTTGTGTTCAAAGTGAGAGAATTGTGTCTTCAATGATGAATTTTGAATGATAGATTGAGAATTCACAATCACAAACTAAATGTGTCTCTTTACATGTATTAGCATTGTATATGCATATAATATTCATGAAAAAAAATGTCTTATTGGTCTCAGGTGGGGACGTTGCCAAGGAACACCGAAACATCAAACAGGCCCTGTCCTCAACCACATTTACCATGGATAAGCACCTTGATCCGAATTCGCAGACGGAACTTGTTGGTCATTCGATTGTAAGACCTTTAACATTACATTTTTCCAAGATATGTACACATCATGATGAACTTTTGTCATATGTGGTTACAGGTTTTAACATCTCCTTATTCAAATGCACAATTTGGTCAAATCTTGAATGCTTATGGACAACAAGCTATGGTATGCTATTAAAATATTGCTACGTCGATGTGATTGAAAATCAAACTTACTTGATCTAGTCTCTTTTTTAATCTATAGACTGGAACTTACCTTCTTTTTATTCATTGGCAAGATAATTTGTTTACTTCTTGTGTTTGGTGTCTAGGATAGATATTGTGTTCACCTATATCTGTGCATGATAGGCTTATGGACAACATAAAATACAATCAGCATATTCATTTATTCCTTGCAAGGACATCACATATTAATATTTATAATTATTACAAATACTATCAGCAAATATGTTTGTTTGAAAAAAAACTTACAAATATGTTGTAATGATAAAATAGTTCATAAAGTGAATATGCGTGTAATCTATGAAGCCAATATACTTTAGAAATATCCGATAGAAATTTAAATTACTTTTAAAGATACATCCACCGATATTTCTCGGATACATTTTTGCCCTTTCTTACCAACTGAAGAAACAACTGTCATCTAGATATGATACATGTTTGATATGTTGTACTAACTAAAAACAGATAATTGTATGTTTTTTCTGACCGATTCATAGTATAAGAATATGTGCTGATATAGGTAGGGAGAAAATATGCAGCTATGCATACTTGTTATGATCGCACTTTTAAAAAAATTGTAATCATCATATATTGACTACTGCTAGTATTTGTTTATTAGTGACCAATAAACAATGTGAATGTGTACAATCATTATGTATCTGTACTCTTATGTATCCGGGTTTCTTTGTGTGTAATATGTATTTTTATTTTGGTAATAAAAAAATATTATGTATTGAATTGATTGCATGTTCTTAATTGTGTGTAGGTTAATGTTAATAGTAATATTTGTAGTTAGTTTTTCGGACTATAATTTATATATATTTAAATATACTTTTTTGTTTTATGAACTAAACTATTGAGAATATATGACTTGTCACTTATTCAGTTTGAAGTGATTTGACCATGTTAGTACATTGTAATCGTAACAATAAGCTTGAGTGTATCTTTAACTGTATGTCTTGGCTCTGTTGTTTCCCTCATTACCTTTTGCACAAGATTCATCTTTATGATGGTTGTGCTTCATTTTACGAAGACATCCTTTCTCTCTATGGACTTTTGCATCTAAATTTAAATTAAACCTCTCTTTCTTTTCCTTTTTTTGTCCAAGACTTTTTATTTTTATAGGCCTATCAGTCTTTTAATATTCTTAATAGTTAATACTGCTCTGTTGCTAATTTACTTGAGTCCTAACAGCTATTGGCATTATGCTAGATGAATCATCAGCTATACCAAATGCATCATGCTAGAATGCTTTTGCCGCTTAAAATGGAAGAGGAACCTGTGTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAGTCGCGCGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGGTATAACTGATATCTACCTTATAATCAATGATGAAAAAATGGATGTAATTCATTGTGTTTTATACTTGACTATCATATTTGTGTATCTGTTGGTATCTAAAACCAACTTTTCTAAAAGATTAAGCAGTTTGGAAAAGGCACCTCAAGAGTTTTATATTAAGAAATATGTAAAATATCTTATAATATCTTAATTGTATCTTGGATCAATCTAGGGTAACTTAACTATCCCTTAGGAATGCTTTCTATATTTTATCATTTATCATTATTATTTTTTCTTATTTAATGAAGATTAGGACTCTAGTACTAGTATAAATATGTATTACTGCTTTTCCATTTGTGTAGAATTGATCATAGTCACAGTTGTATCATTCATTTCTAACAGCCATATCTTCATGAATCCCGTCACCAACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGTTTTCTCAATACAAAGAAGCTCGAACACAACGATTCTGCTGCTCTAGAAAAAGGCAACAATACTGGTGCAACATCGGGTACCAACAATGAGAATCAAGGCTCATCTAATGTGTCGCAGCACATGCACAAAATGCAGGGTTTCAACATCAGTTACCATGATGGAAATGGCTTTACAGCACTATGTCATTCACAGGCAAATGGAAAACAGGAGGGTGACTTCTTTGGTAAAAAGATTGAATCAAATGGTGCTATTAAATGA

Protein sequence

>MS.gene23597.t1

MPGKPETDDWRIKQSEQVQLPSSIYSHHQPWWLENGSKPSSADQINGSIMNNVTHSEPLVSPSLSLTDNSGEHRNIKQALSSTTFTMDKHLDPNSQTELVGHSIVLTSPYSNAQFGQILNAYGQQAMMNHQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKLEHNDSAALEKGNNTGATSGTNNENQGSSNVSQHMHKMQGFNISYHDGNGFTALCHSQANGKQEGDFFGKKIESNGAIK