Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23597.t1 | XP_013445060.1 | 92.9 | 294 | 15 | 2 | 1 | 288 | 1 | 294 | 6.80E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23597.t1 | Q9LXV5 | 38.2 | 262 | 122 | 8 | 2 | 233 | 5 | 256 | 1.9e-28 | 127.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23597.t1 | A0A072TPE2 | 92.9 | 294 | 15 | 2 | 1 | 288 | 1 | 294 | 4.9e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23597.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23597.t1 | MTR_8g037270 | 92.857 | 294 | 15 | 2 | 1 | 288 | 1 | 294 | 0.0 | 556 |
| MS.gene23597.t1 | MTR_3g061510 | 43.162 | 234 | 93 | 8 | 21 | 225 | 20 | 242 | 6.51e-46 | 157 |
| MS.gene23597.t1 | MTR_3g061510 | 43.162 | 234 | 93 | 8 | 21 | 225 | 40 | 262 | 8.36e-46 | 157 |
| MS.gene23597.t1 | MTR_2g030170 | 71.111 | 90 | 26 | 0 | 122 | 211 | 86 | 175 | 9.45e-37 | 130 |
| MS.gene23597.t1 | MTR_8g019540 | 43.415 | 205 | 92 | 9 | 76 | 277 | 95 | 278 | 5.01e-35 | 129 |
| MS.gene23597.t1 | MTR_2g041090 | 48.000 | 150 | 70 | 4 | 109 | 253 | 33 | 179 | 2.49e-34 | 124 |
| MS.gene23597.t1 | MTR_2g030170 | 73.494 | 83 | 22 | 0 | 129 | 211 | 126 | 208 | 4.09e-34 | 124 |
| MS.gene23597.t1 | MTR_2g099490 | 53.125 | 128 | 55 | 3 | 110 | 234 | 134 | 259 | 2.43e-32 | 122 |
| MS.gene23597.t1 | MTR_2g099490 | 47.887 | 142 | 57 | 3 | 110 | 234 | 134 | 275 | 3.83e-31 | 119 |
| MS.gene23597.t1 | MTR_7g106450 | 50.400 | 125 | 48 | 4 | 93 | 214 | 118 | 231 | 2.27e-30 | 117 |
| MS.gene23597.t1 | MTR_1g056530 | 54.206 | 107 | 36 | 3 | 104 | 208 | 128 | 223 | 1.57e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23597.t1 | AT5G12840 | 40.254 | 236 | 108 | 7 | 27 | 233 | 25 | 256 | 2.37e-41 | 144 |
| MS.gene23597.t1 | AT5G12840 | 40.254 | 236 | 108 | 7 | 27 | 233 | 25 | 256 | 2.37e-41 | 144 |
| MS.gene23597.t1 | AT5G12840 | 40.254 | 236 | 108 | 7 | 27 | 233 | 25 | 256 | 2.37e-41 | 144 |
| MS.gene23597.t1 | AT5G12840 | 40.426 | 235 | 108 | 7 | 27 | 233 | 25 | 255 | 3.46e-41 | 144 |
| MS.gene23597.t1 | AT5G12840 | 40.426 | 235 | 108 | 7 | 27 | 233 | 25 | 255 | 3.46e-41 | 144 |
| MS.gene23597.t1 | AT3G20910 | 49.660 | 147 | 71 | 2 | 93 | 236 | 108 | 254 | 8.12e-40 | 141 |
| MS.gene23597.t1 | AT1G30500 | 43.976 | 166 | 77 | 4 | 74 | 231 | 33 | 190 | 3.48e-33 | 120 |
| MS.gene23597.t1 | AT1G30500 | 43.373 | 166 | 74 | 4 | 74 | 231 | 33 | 186 | 4.44e-32 | 117 |
| MS.gene23597.t1 | AT1G72830 | 55.172 | 116 | 47 | 4 | 110 | 220 | 137 | 252 | 4.84e-31 | 119 |
| MS.gene23597.t1 | AT2G34720 | 38.462 | 195 | 92 | 6 | 66 | 247 | 8 | 187 | 1.38e-30 | 114 |
| MS.gene23597.t1 | AT1G17590 | 55.769 | 104 | 40 | 3 | 110 | 211 | 135 | 234 | 1.84e-30 | 117 |
| MS.gene23597.t1 | AT1G17590 | 55.769 | 104 | 40 | 3 | 110 | 211 | 135 | 234 | 1.84e-30 | 117 |
| MS.gene23597.t1 | AT1G17590 | 55.769 | 104 | 40 | 3 | 110 | 211 | 135 | 234 | 1.84e-30 | 117 |
| MS.gene23597.t1 | AT1G17590 | 55.769 | 104 | 40 | 3 | 110 | 211 | 135 | 234 | 1.84e-30 | 117 |
| MS.gene23597.t1 | AT5G06510 | 34.222 | 225 | 106 | 7 | 30 | 235 | 13 | 214 | 2.28e-30 | 115 |
| MS.gene23597.t1 | AT5G06510 | 34.222 | 225 | 106 | 7 | 30 | 235 | 13 | 214 | 2.28e-30 | 115 |
| MS.gene23597.t1 | AT5G06510 | 34.222 | 225 | 106 | 7 | 30 | 235 | 13 | 214 | 2.28e-30 | 115 |
| MS.gene23597.t1 | AT5G06510 | 34.222 | 225 | 106 | 7 | 30 | 235 | 13 | 214 | 2.28e-30 | 115 |
| MS.gene23597.t1 | AT2G34720 | 43.836 | 146 | 63 | 3 | 109 | 247 | 19 | 152 | 5.44e-30 | 111 |
| MS.gene23597.t1 | AT2G34720 | 43.836 | 146 | 63 | 3 | 109 | 247 | 19 | 152 | 5.44e-30 | 111 |
| MS.gene23597.t1 | AT1G72830 | 54.701 | 117 | 47 | 5 | 110 | 220 | 137 | 253 | 2.65e-29 | 114 |
| MS.gene23597.t1 | AT1G54160 | 65.000 | 80 | 27 | 1 | 138 | 216 | 166 | 245 | 4.00e-29 | 113 |
| MS.gene23597.t1 | AT5G06510 | 48.000 | 125 | 47 | 4 | 114 | 235 | 10 | 119 | 1.15e-28 | 108 |
| MS.gene23597.t1 | AT5G06510 | 48.000 | 125 | 47 | 4 | 114 | 235 | 10 | 119 | 1.15e-28 | 108 |
| MS.gene23597.t1 | AT3G14020 | 57.732 | 97 | 39 | 2 | 122 | 216 | 142 | 238 | 1.65e-28 | 111 |
| MS.gene23597.t1 | AT3G14020 | 57.732 | 97 | 39 | 2 | 122 | 216 | 142 | 238 | 1.65e-28 | 111 |
| MS.gene23597.t1 | AT5G06510 | 48.000 | 125 | 47 | 4 | 114 | 235 | 56 | 165 | 3.02e-28 | 108 |
| MS.gene23597.t1 | AT3G05690 | 32.222 | 270 | 130 | 10 | 9 | 249 | 33 | 278 | 7.51e-28 | 110 |
| MS.gene23597.t1 | AT3G05690 | 34.274 | 248 | 110 | 10 | 31 | 249 | 18 | 241 | 9.54e-28 | 108 |
| MS.gene23597.t1 | AT1G72830 | 54.023 | 87 | 38 | 1 | 136 | 220 | 141 | 227 | 1.94e-22 | 95.1 |
Find 67 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCCAATCATCAGTTTC+TGG | 0.147047 | 8.4:+60683908 | None:intergenic |
| CCAAATTGTGCATTTGAATA+AGG | 0.207731 | 8.4:+60682966 | None:intergenic |
| GGTCAAATCTTGAATGCTTA+TGG | 0.216756 | 8.4:-60682945 | MS.gene23597:CDS |
| CCTTATTCAAATGCACAATT+TGG | 0.274102 | 8.4:-60682966 | MS.gene23597:CDS |
| ACAAGTTCCGTCTGCGAATT+CGG | 0.283090 | 8.4:+60683087 | None:intergenic |
| CAGCCTTGGTGGCTTGAAAA+TGG | 0.313297 | 8.4:-60683836 | MS.gene23597:CDS |
| AAACAGGAGGGTGACTTCTT+TGG | 0.313426 | 8.4:-60680830 | MS.gene23597:CDS |
| GATTCTGCTGCTCTAGAAAA+AGG | 0.320183 | 8.4:-60681001 | MS.gene23597:CDS |
| AGGCTGATGATGAGAGTAAA+TGG | 0.326121 | 8.4:+60683853 | None:intergenic |
| TCTTCAGCTGATCAGATAAA+TGG | 0.327548 | 8.4:-60683803 | MS.gene23597:CDS |
| ACAGGGCCTGTTTGATGTTT+CGG | 0.328192 | 8.4:+60683145 | None:intergenic |
| TGTCACACATTCAGAGCCTT+TGG | 0.376234 | 8.4:-60683765 | MS.gene23597:CDS |
| CTGATCAGCTGAAGATGGTT+TGG | 0.384238 | 8.4:+60683811 | None:intergenic |
| GCATTCTAGCATGATGCATT+TGG | 0.399038 | 8.4:+60681624 | None:intergenic |
| TTGAGAAGGGCAAGGGGAAA+TGG | 0.400323 | 8.4:-60681061 | MS.gene23597:CDS |
| GAAAGTTATTAAAGTTAGAA+AGG | 0.407898 | 8.4:-60681498 | MS.gene23597:intron |
| TGAGCCTTGATTCTCATTGT+TGG | 0.412750 | 8.4:+60680952 | None:intergenic |
| TCATCAGTTTCTGGTTTCCC+TGG | 0.428859 | 8.4:+60683917 | None:intergenic |
| TTCACAGGCAAATGGAAAAC+AGG | 0.431715 | 8.4:-60680846 | MS.gene23597:CDS |
| AAAAGCTGTGAAAGGATGCC+AGG | 0.439397 | 8.4:-60683935 | None:intergenic |
| ACTCTCATCATCAGCCTTGG+TGG | 0.446091 | 8.4:-60683847 | MS.gene23597:CDS |
| ATCAGTTACCATGATGGAAA+TGG | 0.459023 | 8.4:-60680887 | MS.gene23597:CDS |
| AATTCGCAGACGGAACTTGT+TGG | 0.463333 | 8.4:-60683084 | MS.gene23597:CDS |
| TGGTAAATGTGGTTGAGGAC+AGG | 0.464978 | 8.4:+60683127 | None:intergenic |
| GCAGCACATGCACAAAATGC+AGG | 0.482353 | 8.4:-60680918 | MS.gene23597:CDS |
| TTTATCTGATCAGCTGAAGA+TGG | 0.483259 | 8.4:+60683806 | None:intergenic |
| CTATGTCATTCACAGGCAAA+TGG | 0.486227 | 8.4:-60680854 | MS.gene23597:CDS |
| TTTACTCTCATCATCAGCCT+TGG | 0.487165 | 8.4:-60683850 | MS.gene23597:CDS |
| GGAAACCAGAAACTGATGAT+TGG | 0.490368 | 8.4:-60683913 | MS.gene23597:CDS |
| AACAATACTGGTGCAACATC+GGG | 0.490937 | 8.4:-60680977 | MS.gene23597:CDS |
| TCTCAAAGCATGTTGGTGAC+GGG | 0.492087 | 8.4:+60681078 | None:intergenic |
| TTCTCAAAGCATGTTGGTGA+CGG | 0.494518 | 8.4:+60681077 | None:intergenic |
| TGACGGGATTCATGAAGATA+TGG | 0.495855 | 8.4:+60681094 | None:intergenic |
| CCGTCTGCGAATTCGGATCA+AGG | 0.506499 | 8.4:+60683094 | None:intergenic |
| ATCCATGGTAAATGTGGTTG+AGG | 0.506757 | 8.4:+60683122 | None:intergenic |
| GGAACACCGAAACATCAAAC+AGG | 0.507642 | 8.4:-60683151 | MS.gene23597:CDS |
| TTCAACATCAGTTACCATGA+TGG | 0.518987 | 8.4:-60680893 | MS.gene23597:CDS |
| GGTAAATGTGGTTGAGGACA+GGG | 0.519708 | 8.4:+60683128 | None:intergenic |
| GTCAATGCAAAGCAGTATCA+TGG | 0.520607 | 8.4:-60681566 | MS.gene23597:CDS |
| GAGAATAAAGCAAAGTGAGC+AGG | 0.523124 | 8.4:-60683891 | MS.gene23597:CDS |
| TACAGCACTATGTCATTCAC+AGG | 0.523214 | 8.4:-60680861 | MS.gene23597:CDS |
| CTGTAAAGCCATTTCCATCA+TGG | 0.526707 | 8.4:+60680879 | None:intergenic |
| CAACAATACTGGTGCAACAT+CGG | 0.530920 | 8.4:-60680978 | MS.gene23597:CDS |
| TGCTTTGCATTGACATACAC+AGG | 0.531370 | 8.4:+60681575 | None:intergenic |
| ACGAAGACAGTCGCGCGCTA+AGG | 0.538100 | 8.4:-60681534 | MS.gene23597:CDS |
| TTGCCCTTCTCAAAGCATGT+TGG | 0.541677 | 8.4:+60681071 | None:intergenic |
| CGGATCAAGGTGCTTATCCA+TGG | 0.548060 | 8.4:+60683107 | None:intergenic |
| TGCTTATGGACAACAAGCTA+TGG | 0.551820 | 8.4:-60682931 | MS.gene23597:intron |
| TTTGCCGCTTAAAATGGAAG+AGG | 0.565386 | 8.4:-60681600 | MS.gene23597:CDS |
| ACATGCTTTGAGAAGGGCAA+GGG | 0.570857 | 8.4:-60681068 | MS.gene23597:CDS |
| GTCACCAACATGCTTTGAGA+AGG | 0.572667 | 8.4:-60681075 | MS.gene23597:CDS |
| CTTTCTTTAACTGATAACTC+AGG | 0.574168 | 8.4:-60683731 | MS.gene23597:CDS |
| GGTACCAACAATGAGAATCA+AGG | 0.578464 | 8.4:-60680956 | MS.gene23597:CDS |
| TTATCAGTTAAAGAAAGTGA+AGG | 0.586779 | 8.4:+60683737 | None:intergenic |
| CATGCTTTGAGAAGGGCAAG+GGG | 0.591440 | 8.4:-60681067 | MS.gene23597:CDS |
| TCACCAACATGCTTTGAGAA+GGG | 0.609839 | 8.4:-60681074 | MS.gene23597:CDS |
| TGATGAGAGTAAATGGAAGA+TGG | 0.612845 | 8.4:+60683860 | None:intergenic |
| CAGCACATGCACAAAATGCA+GGG | 0.616147 | 8.4:-60680917 | MS.gene23597:CDS |
| AAAGCTGTGAAAGGATGCCA+GGG | 0.629084 | 8.4:-60683934 | None:intergenic |
| AACATGCTTTGAGAAGGGCA+AGG | 0.629479 | 8.4:-60681069 | MS.gene23597:CDS |
| ACAGGCAAATGGAAAACAGG+AGG | 0.631076 | 8.4:-60680843 | MS.gene23597:CDS |
| GTCCTCAACCACATTTACCA+TGG | 0.640828 | 8.4:-60683124 | MS.gene23597:CDS |
| GAAAGTGAAGGAGAAACCAA+AGG | 0.644044 | 8.4:+60683749 | None:intergenic |
| CAGGCAAATGGAAAACAGGA+GGG | 0.651426 | 8.4:-60680842 | MS.gene23597:CDS |
| AGAAGGGCAAGGGGAAATGG+CGG | 0.651466 | 8.4:-60681058 | MS.gene23597:CDS |
| CCTTGATCCGAATTCGCAGA+CGG | 0.651496 | 8.4:-60683094 | MS.gene23597:CDS |
| GTGCTTATCCATGGTAAATG+TGG | 0.665524 | 8.4:+60683116 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAATTTAAATTTCTAT+CGG | + | chr8.4:60682192-60682211 | None:intergenic | 10.0% |
| !!! | TGTAATATGTATTTTTATTT+TGG | - | chr8.4:60682553-60682572 | MS.gene23597:intron | 10.0% |
| !! | ATAATATCTTAATTGTATCT+TGG | - | chr8.4:60683419-60683438 | MS.gene23597:intron | 15.0% |
| !! | TATAATCAATGATGAAAAAA+TGG | - | chr8.4:60683259-60683278 | MS.gene23597:intron | 15.0% |
| !!! | AATATTTGTAGTTAGTTTTT+CGG | - | chr8.4:60682644-60682663 | MS.gene23597:intron | 15.0% |
| !!! | TATTAAGTTGACATAATTTT+AGG | - | chr8.4:60681120-60681139 | MS.gene23597:intron | 15.0% |
| !!! | TTTCTTATTTAATGAAGATT+AGG | - | chr8.4:60683511-60683530 | MS.gene23597:intron | 15.0% |
| !!! | TTTTTTCATCATTGATTATA+AGG | + | chr8.4:60683259-60683278 | None:intergenic | 15.0% |
| !! | AAGAATATTAAAAGACTGAT+AGG | + | chr8.4:60682992-60683011 | None:intergenic | 20.0% |
| !! | CATATTCTTATACTATGAAT+CGG | + | chr8.4:60682352-60682371 | None:intergenic | 20.0% |
| !! | CATGAAAAAAAATGTCTTAT+TGG | - | chr8.4:60681520-60681539 | MS.gene23597:CDS | 20.0% |
| !! | CCTATAAAAATAAAAAGTCT+TGG | + | chr8.4:60682969-60682988 | None:intergenic | 20.0% |
| !! | GAAAGTTATTAAAGTTAGAA+AGG | - | chr8.4:60683218-60683237 | MS.gene23597:intron | 20.0% |
| !! | TTCTTAATATAAAACTCTTG+AGG | + | chr8.4:60683383-60683402 | None:intergenic | 20.0% |
| !! | TTGGAAAAATGTAATGTTAA+AGG | + | chr8.4:60681674-60681693 | None:intergenic | 20.0% |
| !!! | CCAAGACTTTTTATTTTTAT+AGG | - | chr8.4:60682966-60682985 | MS.gene23597:CDS | 20.0% |
| ! | AAAAAAAGGAAAAGAAAGAG+AGG | + | chr8.4:60682944-60682963 | None:intergenic | 25.0% |
| ! | AAAAAGTCTTGGACAAAAAA+AGG | + | chr8.4:60682958-60682977 | None:intergenic | 25.0% |
| ! | AAAATGTATCCGAGAAATAT+CGG | + | chr8.4:60682229-60682248 | None:intergenic | 25.0% |
| ! | AAACAAGAAAAAGTTTGAAG+AGG | + | chr8.4:60681027-60681046 | None:intergenic | 25.0% |
| ! | ATAAGCAATCATAGTAAACA+TGG | + | chr8.4:60681310-60681329 | None:intergenic | 25.0% |
| ! | ATAATCAAGGGAAACTTATT+TGG | - | chr8.4:60681248-60681267 | MS.gene23597:intron | 25.0% |
| ! | ATATTCATTTATTCCTTGCA+AGG | - | chr8.4:60682018-60682037 | MS.gene23597:intron | 25.0% |
| ! | ATGAACAATCACAGTAAATA+AGG | + | chr8.4:60681230-60681249 | None:intergenic | 25.0% |
| ! | ATTTGTTTACTTCTTGTGTT+TGG | - | chr8.4:60681922-60681941 | MS.gene23597:intron | 25.0% |
| ! | GGTAAAAAGATTGAATCAAA+TGG | - | chr8.4:60683907-60683926 | MS.gene23597:CDS | 25.0% |
| ! | TACACATTCACATTGTTTAT+TGG | + | chr8.4:60682488-60682507 | None:intergenic | 25.0% |
| ! | TATCATATTTGTGTATCTGT+TGG | - | chr8.4:60683310-60683329 | MS.gene23597:intron | 25.0% |
| ! | TATGATCAATTCTACACAAA+TGG | + | chr8.4:60683573-60683592 | None:intergenic | 25.0% |
| ! | TGAACAATCACAGTAAATAA+GGG | + | chr8.4:60681229-60681248 | None:intergenic | 25.0% |
| ! | TTAAGATGAAAAAGTCCAAT+TGG | + | chr8.4:60681178-60681197 | None:intergenic | 25.0% |
| ! | TTATCAGTTAAAGAAAGTGA+AGG | + | chr8.4:60680982-60681001 | None:intergenic | 25.0% |
| !! | ATAAGAATATGTGCTGATAT+AGG | - | chr8.4:60682361-60682380 | MS.gene23597:intron | 25.0% |
| !! | CTTACCTTCTTTTTATTCAT+TGG | - | chr8.4:60681892-60681911 | MS.gene23597:intron | 25.0% |
| !! | TTCTAAAAGATTAAGCAGTT+TGG | - | chr8.4:60683349-60683368 | MS.gene23597:intron | 25.0% |
| !!! | AAATATAGAAAGCATTCCTA+AGG | + | chr8.4:60683470-60683489 | None:intergenic | 25.0% |
| !!! | AATATAGAAAGCATTCCTAA+GGG | + | chr8.4:60683469-60683488 | None:intergenic | 25.0% |
| !!! | CGGATATTTCTAAAGTATAT+TGG | + | chr8.4:60682172-60682191 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTAATCTATAGAC+TGG | - | chr8.4:60681867-60681886 | MS.gene23597:intron | 25.0% |
| !!! | GCTTAATCTTTTAGAAAAGT+TGG | + | chr8.4:60683345-60683364 | None:intergenic | 25.0% |
| AAAGATGAATCTTGTGCAAA+AGG | + | chr8.4:60682849-60682868 | None:intergenic | 30.0% | |
| AACAATCACAGTAAATAAGG+GGG | + | chr8.4:60681227-60681246 | None:intergenic | 30.0% | |
| AAGATTAAGCAGTTTGGAAA+AGG | - | chr8.4:60683355-60683374 | MS.gene23597:intron | 30.0% | |
| ACGATTACAATGTACTAACA+TGG | + | chr8.4:60682767-60682786 | None:intergenic | 30.0% | |
| ACTATGATTGCTTATAATCC+AGG | - | chr8.4:60681315-60681334 | MS.gene23597:intron | 30.0% | |
| ACTGTGATTGTTCATAATCA+AGG | - | chr8.4:60681235-60681254 | MS.gene23597:intron | 30.0% | |
| AGATACAAGTAACTTCTTGA+AGG | - | chr8.4:60681350-60681369 | MS.gene23597:intron | 30.0% | |
| ATATTACACACAAAGAAACC+CGG | + | chr8.4:60682541-60682560 | None:intergenic | 30.0% | |
| ATCATGATGTGTACATATCT+TGG | + | chr8.4:60681693-60681712 | None:intergenic | 30.0% | |
| ATGGAGATCAAAAGTTCAAT+TGG | + | chr8.4:60681291-60681310 | None:intergenic | 30.0% | |
| ATTGTATCTTGGATCAATCT+AGG | - | chr8.4:60683430-60683449 | MS.gene23597:intron | 30.0% | |
| CACAAGATTCATCTTTATGA+TGG | - | chr8.4:60682853-60682872 | MS.gene23597:intron | 30.0% | |
| CCAAATTGTGCATTTGAATA+AGG | + | chr8.4:60681753-60681772 | None:intergenic | 30.0% | |
| CCTTATTCAAATGCACAATT+TGG | - | chr8.4:60681750-60681769 | MS.gene23597:intron | 30.0% | |
| CTATGATTGCTTATAATCCA+GGG | - | chr8.4:60681316-60681335 | MS.gene23597:intron | 30.0% | |
| CTGTGATTGTTCATAATCAA+GGG | - | chr8.4:60681236-60681255 | MS.gene23597:intron | 30.0% | |
| CTTGCCAATGAATAAAAAGA+AGG | + | chr8.4:60681899-60681918 | None:intergenic | 30.0% | |
| CTTTCTTTAACTGATAACTC+AGG | - | chr8.4:60680985-60681004 | MS.gene23597:CDS | 30.0% | |
| GAACAATCACAGTAAATAAG+GGG | + | chr8.4:60681228-60681247 | None:intergenic | 30.0% | |
| GTATCTTTAACTGTATGTCT+TGG | - | chr8.4:60682803-60682822 | MS.gene23597:intron | 30.0% | |
| TATCTGTACTCTTATGTATC+CGG | - | chr8.4:60682519-60682538 | MS.gene23597:intron | 30.0% | |
| TCTAGATTTGTCAAACCAAT+TGG | - | chr8.4:60681160-60681179 | MS.gene23597:intron | 30.0% | |
| TTATAATCCAGGGAAACTTA+TGG | - | chr8.4:60681326-60681345 | MS.gene23597:intron | 30.0% | |
| TTGTATCTTGGATCAATCTA+GGG | - | chr8.4:60683431-60683450 | MS.gene23597:intron | 30.0% | |
| ! | AAAAATGTCTTATTGGTCTC+AGG | - | chr8.4:60681527-60681546 | MS.gene23597:CDS | 30.0% |
| ! | AATATGTGCTGATATAGGTA+GGG | - | chr8.4:60682366-60682385 | MS.gene23597:intron | 30.0% |
| ! | ATTTTAGGCCATTTGCAATT+TGG | - | chr8.4:60681135-60681154 | MS.gene23597:intron | 30.0% |
| ! | TGATGAACTTTTGTCATATG+TGG | - | chr8.4:60681709-60681728 | MS.gene23597:intron | 30.0% |
| !! | TTTCTTCAGTTGGTAAGAAA+GGG | + | chr8.4:60682254-60682273 | None:intergenic | 30.0% |
| ATACATCCACCGATATTTCT+CGG | - | chr8.4:60682217-60682236 | MS.gene23597:intron | 35.0% | |
| ATCTGTACTCTTATGTATCC+GGG | - | chr8.4:60682520-60682539 | MS.gene23597:intron | 35.0% | |
| ATCTTGTGCAAAAGGTAATG+AGG | + | chr8.4:60682841-60682860 | None:intergenic | 35.0% | |
| ATTCTCCAATCATCAGTTTC+TGG | + | chr8.4:60680811-60680830 | None:intergenic | 35.0% | |
| CTAGAAAAAGGCAACAATAC+TGG | - | chr8.4:60683727-60683746 | MS.gene23597:intron | 35.0% | |
| GCATGTTCTTAATTGTGTGT+AGG | - | chr8.4:60682607-60682626 | MS.gene23597:intron | 35.0% | |
| GGTCAAATCTTGAATGCTTA+TGG | - | chr8.4:60681771-60681790 | MS.gene23597:intron | 35.0% | |
| TAATATGTGATGTCCTTGCA+AGG | + | chr8.4:60682034-60682053 | None:intergenic | 35.0% | |
| TCTAGATGCCAAATTGCAAA+TGG | + | chr8.4:60681146-60681165 | None:intergenic | 35.0% | |
| TCTTCAGCTGATCAGATAAA+TGG | - | chr8.4:60680913-60680932 | MS.gene23597:CDS | 35.0% | |
| TCTTGTGCAAAAGGTAATGA+GGG | + | chr8.4:60682840-60682859 | None:intergenic | 35.0% | |
| TGATGAGAGTAAATGGAAGA+TGG | + | chr8.4:60680859-60680878 | None:intergenic | 35.0% | |
| TTCAACATCAGTTACCATGA+TGG | - | chr8.4:60683823-60683842 | MS.gene23597:CDS | 35.0% | |
| TTTATCTGATCAGCTGAAGA+TGG | + | chr8.4:60680913-60680932 | None:intergenic | 35.0% | |
| ! | ATCAGTTACCATGATGGAAA+TGG | - | chr8.4:60683829-60683848 | MS.gene23597:CDS | 35.0% |
| ! | CTTTTGTCATATGTGGTTAC+AGG | - | chr8.4:60681716-60681735 | MS.gene23597:intron | 35.0% |
| ! | GAATATGTGCTGATATAGGT+AGG | - | chr8.4:60682365-60682384 | MS.gene23597:intron | 35.0% |
| ! | TTCCTTTTGCATACACTTCT+TGG | - | chr8.4:60681068-60681087 | MS.gene23597:CDS | 35.0% |
| !! | AATGCTTTTGCCGCTTAAAA+TGG | - | chr8.4:60683110-60683129 | MS.gene23597:CDS | 35.0% |
| !! | ATGACAGTTGTTTCTTCAGT+TGG | + | chr8.4:60682264-60682283 | None:intergenic | 35.0% |
| !! | GTTTCTTCAGTTGGTAAGAA+AGG | + | chr8.4:60682255-60682274 | None:intergenic | 35.0% |
| AACAATACTGGTGCAACATC+GGG | - | chr8.4:60683739-60683758 | MS.gene23597:CDS | 40.0% | |
| ACTTGAGTCCTAACAGCTAT+TGG | - | chr8.4:60683041-60683060 | MS.gene23597:intron | 40.0% | |
| AGCCTATCATGCACAGATAT+AGG | + | chr8.4:60681972-60681991 | None:intergenic | 40.0% | |
| ATCCATGGTAAATGTGGTTG+AGG | + | chr8.4:60681597-60681616 | None:intergenic | 40.0% | |
| ATCTGTGCATGATAGGCTTA+TGG | - | chr8.4:60681974-60681993 | MS.gene23597:intron | 40.0% | |
| ATGTATCCGAGAAATATCGG+TGG | + | chr8.4:60682226-60682245 | None:intergenic | 40.0% | |
| CAACAATACTGGTGCAACAT+CGG | - | chr8.4:60683738-60683757 | MS.gene23597:CDS | 40.0% | |
| CACCTATATCTGTGCATGAT+AGG | - | chr8.4:60681967-60681986 | MS.gene23597:intron | 40.0% | |
| CTATGTCATTCACAGGCAAA+TGG | - | chr8.4:60683862-60683881 | MS.gene23597:CDS | 40.0% | |
| CTGTAAAGCCATTTCCATCA+TGG | + | chr8.4:60683840-60683859 | None:intergenic | 40.0% | |
| GAAAGTGAAGGAGAAACCAA+AGG | + | chr8.4:60680970-60680989 | None:intergenic | 40.0% | |
| GAAGACATCCTTTCTCTCTA+TGG | - | chr8.4:60682892-60682911 | MS.gene23597:intron | 40.0% | |
| GAGAATAAAGCAAAGTGAGC+AGG | - | chr8.4:60680825-60680844 | MS.gene23597:CDS | 40.0% | |
| GCAAAAGTCCATAGAGAGAA+AGG | + | chr8.4:60682903-60682922 | None:intergenic | 40.0% | |
| GCATAATGCCAATAGCTGTT+AGG | + | chr8.4:60683052-60683071 | None:intergenic | 40.0% | |
| GCATTCTAGCATGATGCATT+TGG | + | chr8.4:60683095-60683114 | None:intergenic | 40.0% | |
| GGAAACCAGAAACTGATGAT+TGG | - | chr8.4:60680803-60680822 | MS.gene23597:CDS | 40.0% | |
| GGGTAACTTAACTATCCCTT+AGG | - | chr8.4:60683451-60683470 | MS.gene23597:intron | 40.0% | |
| GGTACCAACAATGAGAATCA+AGG | - | chr8.4:60683760-60683779 | MS.gene23597:CDS | 40.0% | |
| GTATCTTCCATAAGTTTCCC+TGG | + | chr8.4:60681336-60681355 | None:intergenic | 40.0% | |
| GTCAATGCAAAGCAGTATCA+TGG | - | chr8.4:60683150-60683169 | MS.gene23597:CDS | 40.0% | |
| GTGCTTATCCATGGTAAATG+TGG | + | chr8.4:60681603-60681622 | None:intergenic | 40.0% | |
| TACAGCACTATGTCATTCAC+AGG | - | chr8.4:60683855-60683874 | MS.gene23597:CDS | 40.0% | |
| TGACGGGATTCATGAAGATA+TGG | + | chr8.4:60683625-60683644 | None:intergenic | 40.0% | |
| TGAGCCTTGATTCTCATTGT+TGG | + | chr8.4:60683767-60683786 | None:intergenic | 40.0% | |
| TGCTTATGGACAACAAGCTA+TGG | - | chr8.4:60681785-60681804 | MS.gene23597:intron | 40.0% | |
| TTCACAGGCAAATGGAAAAC+AGG | - | chr8.4:60683870-60683889 | MS.gene23597:CDS | 40.0% | |
| TTTACTCTCATCATCAGCCT+TGG | - | chr8.4:60680866-60680885 | MS.gene23597:CDS | 40.0% | |
| ! | AATGTCTTATTGGTCTCAGG+TGG | - | chr8.4:60681530-60681549 | MS.gene23597:CDS | 40.0% |
| ! | AGCCAAGAAGTGTATGCAAA+AGG | + | chr8.4:60681073-60681092 | None:intergenic | 40.0% |
| ! | AGGCTGATGATGAGAGTAAA+TGG | + | chr8.4:60680866-60680885 | None:intergenic | 40.0% |
| ! | ATGTCTTATTGGTCTCAGGT+GGG | - | chr8.4:60681531-60681550 | MS.gene23597:CDS | 40.0% |
| ! | GGTTCCTCTTCCATTTTAAG+CGG | + | chr8.4:60683123-60683142 | None:intergenic | 40.0% |
| ! | TGCTTTGCATTGACATACAC+AGG | + | chr8.4:60683144-60683163 | None:intergenic | 40.0% |
| ! | TTCTCAAAGCATGTTGGTGA+CGG | + | chr8.4:60683642-60683661 | None:intergenic | 40.0% |
| ! | TTTGCCGCTTAAAATGGAAG+AGG | - | chr8.4:60683116-60683135 | MS.gene23597:CDS | 40.0% |
| !! | ACTTCTTGTGTTTGGTGTCT+AGG | - | chr8.4:60681930-60681949 | MS.gene23597:intron | 40.0% |
| !! | GATTCTGCTGCTCTAGAAAA+AGG | - | chr8.4:60683715-60683734 | MS.gene23597:intron | 40.0% |
| !! | TCACCAACATGCTTTGAGAA+GGG | - | chr8.4:60683642-60683661 | MS.gene23597:intron | 40.0% |
| !! | TTTGATGTTTCGGTGTTCCT+TGG | + | chr8.4:60681564-60681583 | None:intergenic | 40.0% |
| AAACAGGAGGGTGACTTCTT+TGG | - | chr8.4:60683886-60683905 | MS.gene23597:CDS | 45.0% | |
| AATTCGCAGACGGAACTTGT+TGG | - | chr8.4:60681632-60681651 | MS.gene23597:CDS | 45.0% | |
| ACAAGTTCCGTCTGCGAATT+CGG | + | chr8.4:60681632-60681651 | None:intergenic | 45.0% | |
| ACAGGCAAATGGAAAACAGG+AGG | - | chr8.4:60683873-60683892 | MS.gene23597:CDS | 45.0% | |
| ACAGGGCCTGTTTGATGTTT+CGG | + | chr8.4:60681574-60681593 | None:intergenic | 45.0% | |
| CAGCACATGCACAAAATGCA+GGG | - | chr8.4:60683799-60683818 | MS.gene23597:CDS | 45.0% | |
| CAGGCAAATGGAAAACAGGA+GGG | - | chr8.4:60683874-60683893 | MS.gene23597:CDS | 45.0% | |
| CTGATCAGCTGAAGATGGTT+TGG | + | chr8.4:60680908-60680927 | None:intergenic | 45.0% | |
| GGAACACCGAAACATCAAAC+AGG | - | chr8.4:60681565-60681584 | MS.gene23597:CDS | 45.0% | |
| GGTAAATGTGGTTGAGGACA+GGG | + | chr8.4:60681591-60681610 | None:intergenic | 45.0% | |
| GTCCTCAACCACATTTACCA+TGG | - | chr8.4:60681592-60681611 | MS.gene23597:CDS | 45.0% | |
| TGGTAAATGTGGTTGAGGAC+AGG | + | chr8.4:60681592-60681611 | None:intergenic | 45.0% | |
| TGTCACACATTCAGAGCCTT+TGG | - | chr8.4:60680951-60680970 | MS.gene23597:CDS | 45.0% | |
| TTGCCCTTCTCAAAGCATGT+TGG | + | chr8.4:60683648-60683667 | None:intergenic | 45.0% | |
| ! | TGTCTTATTGGTCTCAGGTG+GGG | - | chr8.4:60681532-60681551 | MS.gene23597:CDS | 45.0% |
| !! | AACATGCTTTGAGAAGGGCA+AGG | - | chr8.4:60683647-60683666 | MS.gene23597:intron | 45.0% |
| !! | ACATGCTTTGAGAAGGGCAA+GGG | - | chr8.4:60683648-60683667 | MS.gene23597:intron | 45.0% |
| !! | GTCACCAACATGCTTTGAGA+AGG | - | chr8.4:60683641-60683660 | MS.gene23597:intron | 45.0% |
| !! | TCATCAGTTTCTGGTTTCCC+TGG | + | chr8.4:60680802-60680821 | None:intergenic | 45.0% |
| !! | TCTCAAAGCATGTTGGTGAC+GGG | + | chr8.4:60683641-60683660 | None:intergenic | 45.0% |
| ACTCTCATCATCAGCCTTGG+TGG | - | chr8.4:60680869-60680888 | MS.gene23597:CDS | 50.0% | |
| CCTTGATCCGAATTCGCAGA+CGG | - | chr8.4:60681622-60681641 | MS.gene23597:CDS | 50.0% | |
| GCAGCACATGCACAAAATGC+AGG | - | chr8.4:60683798-60683817 | MS.gene23597:CDS | 50.0% | |
| TTGAGAAGGGCAAGGGGAAA+TGG | - | chr8.4:60683655-60683674 | MS.gene23597:intron | 50.0% | |
| ! | CAGCCTTGGTGGCTTGAAAA+TGG | - | chr8.4:60680880-60680899 | MS.gene23597:CDS | 50.0% |
| ! | CGGATCAAGGTGCTTATCCA+TGG | + | chr8.4:60681612-60681631 | None:intergenic | 50.0% |
| !! | CATGCTTTGAGAAGGGCAAG+GGG | - | chr8.4:60683649-60683668 | MS.gene23597:intron | 50.0% |
| !! | GAGCCATTTTCAAGCCACCA+AGG | + | chr8.4:60680886-60680905 | None:intergenic | 50.0% |
| AGAAGGGCAAGGGGAAATGG+CGG | - | chr8.4:60683658-60683677 | MS.gene23597:intron | 55.0% | |
| CCGTCTGCGAATTCGGATCA+AGG | + | chr8.4:60681625-60681644 | None:intergenic | 55.0% | |
| ACGAAGACAGTCGCGCGCTA+AGG | - | chr8.4:60683182-60683201 | MS.gene23597:intron | 60.0% | |
| CTCAGGTGGGGACGTTGCCA+AGG | - | chr8.4:60681544-60681563 | MS.gene23597:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60680796 | 60683942 | 60680796 | ID=MS.gene23597 |
| chr8.4 | mRNA | 60680796 | 60683942 | 60680796 | ID=MS.gene23597.t1;Parent=MS.gene23597 |
| chr8.4 | exon | 60683730 | 60683942 | 60683730 | ID=MS.gene23597.t1.exon1;Parent=MS.gene23597.t1 |
| chr8.4 | CDS | 60683730 | 60683942 | 60683730 | ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1 |
| chr8.4 | exon | 60683074 | 60683172 | 60683074 | ID=MS.gene23597.t1.exon2;Parent=MS.gene23597.t1 |
| chr8.4 | CDS | 60683074 | 60683172 | 60683074 | ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1 |
| chr8.4 | exon | 60682932 | 60683000 | 60682932 | ID=MS.gene23597.t1.exon3;Parent=MS.gene23597.t1 |
| chr8.4 | CDS | 60682932 | 60683000 | 60682932 | ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1 |
| chr8.4 | exon | 60681499 | 60681663 | 60681499 | ID=MS.gene23597.t1.exon4;Parent=MS.gene23597.t1 |
| chr8.4 | CDS | 60681499 | 60681663 | 60681499 | ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1 |
| chr8.4 | exon | 60680796 | 60681116 | 60680796 | ID=MS.gene23597.t1.exon5;Parent=MS.gene23597.t1 |
| chr8.4 | CDS | 60680796 | 60681116 | 60680796 | ID=cds.MS.gene23597.t1;Parent=MS.gene23597.t1 |
| Gene Sequence |
| Protein sequence |
