AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23749

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23749.t1 MTR_7g446520 64.578 367 65 5 57 414 15 325 5.18e-151 449
MS.gene23749.t1 MTR_7g028855 71.088 294 53 4 1 293 1 263 1.39e-129 398
MS.gene23749.t1 MTR_7g446480 58.486 383 72 8 1 383 1 296 8.44e-127 385
MS.gene23749.t1 MTR_7g446510 86.624 157 21 0 227 383 155 311 3.35e-90 290
MS.gene23749.t1 MTR_7g446510 51.648 182 57 4 472 650 1 154 2.93e-43 160
MS.gene23749.t1 MTR_1g070355 39.655 232 138 1 152 383 76 305 3.92e-47 178
MS.gene23749.t1 MTR_5g076070 32.117 274 168 2 108 381 27 282 3.72e-42 156
MS.gene23749.t1 MTR_6g051425 32.061 262 158 4 158 400 25 285 3.49e-34 134
MS.gene23749.t1 MTR_6g022070 36.869 198 108 1 431 628 1 181 1.76e-31 126
MS.gene23749.t1 MTR_0645s0010 50.467 107 47 3 509 614 1 102 1.48e-25 102
MS.gene23749.t1 MTR_6g022080 26.163 172 127 0 141 312 76 247 1.24e-19 89.7
MS.gene23749.t1 MTR_8g467420 45.161 93 49 2 124 214 51 143 1.07e-18 84.7
MS.gene23749.t1 MTR_4g035820 28.707 317 187 10 81 383 19 310 1.24e-18 91.7
MS.gene23749.t1 MTR_0402s0040 34.270 178 105 4 154 326 30 200 3.90e-18 89.0
MS.gene23749.t1 MTR_3g450850 26.271 236 162 5 156 381 53 286 5.28e-16 81.3
MS.gene23749.t1 MTR_0558s0020 25.000 256 167 7 149 383 35 286 6.74e-15 77.0
MS.gene23749.t1 MTR_0060s0090 38.750 80 49 0 153 232 59 138 1.14e-13 70.1
MS.gene23749.t1 MTR_3g448650 36.842 114 63 1 112 225 53 157 1.24e-13 70.5
MS.gene23749.t1 MTR_6g053140 30.357 168 93 4 108 261 47 204 3.26e-13 70.1
MS.gene23749.t1 MTR_2g101460 30.464 151 102 1 124 271 26 176 7.66e-13 68.9
MS.gene23749.t1 MTR_1g008290 30.147 136 90 2 210 345 10 140 8.68e-13 67.0
MS.gene23749.t1 MTR_2g101460 30.464 151 102 1 124 271 16 166 1.65e-12 67.8
MS.gene23749.t1 MTR_2g098880 39.450 109 64 2 144 251 55 162 4.98e-12 67.4
MS.gene23749.t1 MTR_2g098880 39.450 109 64 2 144 251 67 174 6.40e-12 67.4
MS.gene23749.t1 MTR_3g080590 50.000 58 29 0 143 200 98 155 1.90e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23749.t1 AT4G38180 32.845 478 291 9 154 606 77 549 3.31e-73 257
MS.gene23749.t1 AT4G15090 29.412 476 308 8 154 606 55 525 2.55e-67 241
MS.gene23749.t1 AT4G15090 29.412 476 308 8 154 606 55 525 2.55e-67 241
MS.gene23749.t1 AT4G15090 29.412 476 308 8 154 606 55 525 2.55e-67 241
MS.gene23749.t1 AT4G15090 29.412 476 308 8 154 606 55 525 2.55e-67 241
MS.gene23749.t1 AT4G15090 29.412 476 308 8 154 606 55 525 2.55e-67 241
MS.gene23749.t1 AT3G22170 25.946 555 342 12 87 606 14 534 1.37e-52 198
MS.gene23749.t1 AT3G22170 25.946 555 342 12 87 606 14 534 1.37e-52 198
MS.gene23749.t1 AT3G06250 28.151 476 271 13 154 607 194 620 4.65e-48 184
MS.gene23749.t1 AT3G06250 28.151 476 271 13 154 607 194 620 4.65e-48 184
MS.gene23749.t1 AT3G06250 28.151 476 271 13 154 607 194 620 4.65e-48 184
MS.gene23749.t1 AT1G76320 27.254 477 308 9 154 606 1 462 5.50e-48 183
MS.gene23749.t1 AT1G76320 27.254 477 308 9 154 606 1 462 5.51e-48 183
MS.gene23749.t1 AT1G76320 27.254 477 308 9 154 606 1 462 5.51e-48 183
MS.gene23749.t1 AT1G76320 27.254 477 308 9 154 606 1 462 8.79e-48 182
MS.gene23749.t1 AT1G10240 26.639 488 307 13 156 606 54 527 4.08e-45 174
MS.gene23749.t1 AT1G10240 26.639 488 307 13 156 606 54 527 4.08e-45 174
MS.gene23749.t1 AT5G18960 26.778 478 278 14 154 607 215 644 1.29e-42 167
MS.gene23749.t1 AT5G18960 26.778 478 278 14 154 607 215 644 1.29e-42 167
MS.gene23749.t1 AT1G80010 27.515 487 303 14 154 605 99 570 3.37e-42 166
MS.gene23749.t1 AT1G52520 27.835 485 289 14 154 605 89 545 3.11e-41 162
MS.gene23749.t1 AT2G27110 26.255 518 317 16 120 607 13 495 1.31e-37 152
MS.gene23749.t1 AT2G27110 26.255 518 317 16 120 607 13 495 1.31e-37 152
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 26 473 4.57e-36 147
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 26 473 4.57e-36 147
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 26 473 4.73e-36 147
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 26 473 4.73e-36 147
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 26 473 5.28e-36 147
MS.gene23749.t1 AT4G19990 23.361 488 298 8 155 606 40 487 7.09e-36 146
MS.gene23749.t1 AT2G27110 28.383 303 193 7 326 607 51 350 2.30e-33 138
MS.gene23749.t1 AT5G28530 24.644 491 319 12 156 606 61 540 1.02e-32 136
MS.gene23749.t1 AT4G38170 26.885 305 192 6 327 607 18 315 2.16e-32 133
MS.gene23749.t1 AT5G28530 24.644 491 315 12 156 606 61 536 2.81e-32 134
MS.gene23749.t1 AT5G28530 24.644 491 315 12 156 606 61 536 2.81e-32 134
MS.gene23749.t1 AT4G19990 23.445 418 256 6 213 606 39 416 2.75e-31 131
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 6.32e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 6.32e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 144 427 6.91e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 7.42e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 7.42e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 7.42e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 144 427 7.77e-27 118
MS.gene23749.t1 AT2G32250 23.860 285 195 3 342 605 185 468 1.24e-26 117
MS.gene23749.t1 AT5G28530 23.043 460 302 11 156 606 61 477 4.10e-25 112
MS.gene23749.t1 AT5G28530 23.043 460 298 11 156 606 61 473 1.20e-24 110
MS.gene23749.t1 AT3G07500 40.777 103 57 3 154 255 37 136 3.46e-11 64.3

Find 197 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGCACTGGGCATCTTTC+TGG 0.006188 7.1:+46925776 MS.gene23749:CDS
AACAATGCCTTTACTGATTT+TGG 0.059598 7.1:+46922968 MS.gene23749:CDS
ATCCTTCTCCCACGTCTTTC+TGG 0.095830 7.1:-46925718 None:intergenic
ATCCTCCTCCCACGTCTTTC+TGG 0.104496 7.1:-46925922 None:intergenic
ATCCTTCTCCCACGTCTTTC+TGG 0.118623 7.1:-46925616 None:intergenic
GCAAGCAATGAACATCTTTC+TGG 0.145774 7.1:+46925878 MS.gene23749:CDS
AGGATGAATTTGAAGTGTTT+TGG 0.200076 7.1:+46924493 MS.gene23749:CDS
GACGTTTGAAATGTCTATTT+TGG 0.234421 7.1:+46924121 MS.gene23749:CDS
CACTCACAAACAGTTATATT+TGG 0.234686 7.1:+46924213 MS.gene23749:CDS
AATAAGAACTTGTCATATAA+TGG 0.247315 7.1:+46923909 MS.gene23749:CDS
CCCACGTCTTTCTGGCTATC+AGG 0.264446 7.1:-46925608 None:intergenic
TGTTCACTACAGACCCAAAA+AGG 0.266221 7.1:+46923750 MS.gene23749:CDS
TTCTTTGTTCTCATATGTTT+TGG 0.278033 7.1:-46924562 None:intergenic
CCATCTGTTACAACTGCTTT+TGG 0.282718 7.1:-46924318 None:intergenic
TGCATTTACACCCTGTTTAT+CGG 0.290641 7.1:+46923836 MS.gene23749:CDS
CCTGAAGTTCCAATTGTTAC+TGG 0.294336 7.1:+46925308 MS.gene23749:CDS
ATCCTTCTCCCACGTCTCTT+TGG 0.296957 7.1:-46925514 None:intergenic
GGGGACTTGGTGAGGGAAAA+TGG 0.297027 7.1:+46924516 MS.gene23749:CDS
CTTGTTGCGTTGGACGAAAA+AGG 0.298153 7.1:+46925102 MS.gene23749:CDS
ACTTAACATTCAGATAGTTT+AGG 0.298701 7.1:-46924050 None:intergenic
CTTAACATTCAGATAGTTTA+GGG 0.312093 7.1:-46924049 None:intergenic
TTGCAGGGAAGTGTCCAAAA+AGG 0.313369 7.1:+46925226 MS.gene23749:intron
AGTGATGATGGTGGTTGTTC+TGG 0.317361 7.1:+46923199 MS.gene23749:CDS
CATTAACTGCTGAAGGAATA+AGG 0.318241 7.1:+46923494 MS.gene23749:CDS
TGCTGAAGGAATAAGGAAAA+TGG 0.318497 7.1:+46923501 MS.gene23749:CDS
CCAGTAACAATTGGAACTTC+AGG 0.318979 7.1:-46925308 None:intergenic
TTCTATGAGGGAGGCGATAA+AGG 0.320499 7.1:+46924347 MS.gene23749:CDS
CAAGCACTGGGCATCTTTCT+GGG 0.343647 7.1:+46925777 MS.gene23749:CDS
TCCCATACAATCTAGAAAAC+TGG 0.352729 7.1:-46924286 None:intergenic
CGCAACAAGATCAAACATTC+TGG 0.354601 7.1:-46925088 None:intergenic
TGCTCCAAAGAAGAATAAAA+AGG 0.367722 7.1:+46925382 MS.gene23749:CDS
TGGCTAGCATGCTGAGACAT+TGG 0.368552 7.1:-46925800 None:intergenic
CCCACGTCTCTTTGGCTATC+GGG 0.373225 7.1:-46925506 None:intergenic
CATTGGTTGGAGTAGGTTCA+TGG 0.373380 7.1:-46923810 None:intergenic
AGATCAGATTATTTCTGCTT+TGG 0.376852 7.1:+46924159 MS.gene23749:CDS
CTGTTAGGAAGAGTGATATT+GGG 0.390006 7.1:+46923587 MS.gene23749:CDS
GGAAGTAGATTCTAAGTTGA+TGG 0.394286 7.1:+46925159 MS.gene23749:CDS
AAGAGTTATGTTAGGAAGAA+AGG 0.394307 7.1:+46924669 MS.gene23749:CDS
GTTGAGTTTCCAGTAACAAT+TGG 0.399158 7.1:-46925317 None:intergenic
GCTGTTAGGAAGAGTGATAT+TGG 0.399403 7.1:+46923586 MS.gene23749:CDS
TCCCACGTCTCTTTGGCTAT+CGG 0.401616 7.1:-46925507 None:intergenic
ATAAGAACTTGTCATATAAT+GGG 0.403187 7.1:+46923910 MS.gene23749:CDS
GGTACACCGGAACATGATTA+CGG 0.407134 7.1:+46922989 MS.gene23749:CDS
AGCATTTATCAAGGTTAGAT+AGG 0.409294 7.1:+46923677 MS.gene23749:CDS
GATTATAGTGCTGGTGATAA+AGG 0.421954 7.1:+46923223 MS.gene23749:CDS
TACCTGCGTGACGATTTCTT+TGG 0.423240 7.1:+46924600 MS.gene23749:CDS
TATAAGTACGGTAAGTGTAA+TGG 0.430620 7.1:+46923559 MS.gene23749:CDS
TGGCTAGCATGCTGAGACAT+GGG 0.432772 7.1:-46925902 None:intergenic
GGAGCACCTTTGCACTTCAC+TGG 0.435097 7.1:-46925365 None:intergenic
GGATGACATACAAAAGCTTC+GGG 0.435966 7.1:+46925271 MS.gene23749:CDS
CAGTAACAATTGGAACTTCA+GGG 0.439435 7.1:-46925307 None:intergenic
CATAGACGATGACGCATACT+TGG 0.440034 7.1:-46924378 None:intergenic
ATATTGACTGCTTGCAGCAC+AGG 0.440762 7.1:-46925972 None:intergenic
CAAGCAATGAACATCTTTCT+GGG 0.441558 7.1:+46925879 MS.gene23749:CDS
GAGAGAAGAAGCATTTATCA+AGG 0.445750 7.1:+46923668 MS.gene23749:CDS
TGGCTAGCATGCTGAGACAT+GGG 0.445822 7.1:-46926004 None:intergenic
GATATTGGGCGCAATGTTAA+CGG 0.446255 7.1:+46923601 MS.gene23749:CDS
AGACGTGGGAGGAGGATCAA+AGG 0.446373 7.1:+46925928 MS.gene23749:CDS
CGAGGCTGCTGAAATCTATA+CGG 0.448201 7.1:+46924821 MS.gene23749:CDS
CTGCGTGACGATTTCTTTGG+TGG 0.454197 7.1:+46924603 MS.gene23749:CDS
ATGTTGACTGCTTGCAGCAC+AGG 0.458698 7.1:-46926035 None:intergenic
AAGACATGTTCCGCAAGCAC+TGG 0.462453 7.1:+46925764 MS.gene23749:CDS
TTGATGGAGATTGCTCAATA+TGG 0.463390 7.1:+46925175 MS.gene23749:CDS
GGGATACATGGTGGCTCAGA+AGG 0.464555 7.1:+46923930 MS.gene23749:CDS
TAGTGAACACGGAGCCTAGC+TGG 0.466097 7.1:-46923736 None:intergenic
TGGATGACATACAAAAGCTT+CGG 0.466700 7.1:+46925270 MS.gene23749:CDS
TGGCTAGCATGCTGAGACAT+GGG 0.467113 7.1:-46925698 None:intergenic
GAAACATATCCGATCATTGT+TGG 0.469215 7.1:+46923037 MS.gene23749:CDS
TCTTGAATGTGGACTATTGT+GGG 0.469444 7.1:+46925137 MS.gene23749:CDS
CTGGCTAGCATGCTGAGACA+TGG 0.469752 7.1:-46925903 None:intergenic
TTGGCTATCGGGCTGAGACA+TGG 0.475904 7.1:-46925495 None:intergenic
GTAGATAAAGCACAGATTGA+TGG 0.478198 7.1:+46923871 MS.gene23749:CDS
TGATTACGGTTCTACGGATG+TGG 0.481654 7.1:+46923003 MS.gene23749:CDS
CAGCACAGGGGATGAAAACC+TGG 0.488423 7.1:-46924772 None:intergenic
TGTTCTGGTGATTATAGTGC+TGG 0.489646 7.1:+46923214 MS.gene23749:CDS
TTCTTGAATGTGGACTATTG+TGG 0.490201 7.1:+46925136 MS.gene23749:CDS
CGCAGATGAGTTGTCAGCAC+AGG 0.491267 7.1:-46924786 None:intergenic
AAACATATCCGATCATTGTT+GGG 0.491804 7.1:+46923038 MS.gene23749:CDS
GTAGAACCGTAATCATGTTC+CGG 0.492886 7.1:-46922995 None:intergenic
AAGGGTGGATATCCCGGTGT+TGG 0.494812 7.1:+46923949 MS.gene23749:CDS
AGACGTGGGAGAAGGATCAA+AGG 0.494945 7.1:+46925520 MS.gene23749:CDS
AGACGTGGGAGAAGGATCAA+AGG 0.494945 7.1:+46925724 MS.gene23749:CDS
TTGGCTAGCATGCTGAGACA+TGG 0.496323 7.1:-46926005 None:intergenic
AGGGTGGATATCCCGGTGTT+GGG 0.498763 7.1:+46923950 MS.gene23749:CDS
GCAGTATGTATGCAACAAGC+AGG 0.502107 7.1:+46923639 MS.gene23749:CDS
TGTAGTTGTTGGTGAGGAAA+TGG 0.504666 7.1:+46923459 MS.gene23749:intron
TGGCTATCGGGCTGAGACAT+GGG 0.505485 7.1:-46925494 None:intergenic
CCTTTGCACTTCACTGGCAA+TGG 0.506348 7.1:-46925359 None:intergenic
TGCGTCATCGTCTATGTGCT+TGG 0.509132 7.1:+46924385 MS.gene23749:CDS
GACGTGGGAGGAGGATCAAA+GGG 0.511280 7.1:+46925929 MS.gene23749:CDS
ATATGAGAACAAAGAATTGT+GGG 0.511340 7.1:+46924569 MS.gene23749:CDS
AAGAATACTCAAGGGAATAC+AGG 0.512005 7.1:+46923142 MS.gene23749:CDS
AGTGGCAGAATATTCACAAA+AGG 0.514210 7.1:-46924091 None:intergenic
GCTCAGAAGGGTGGATATCC+CGG 0.515458 7.1:+46923943 MS.gene23749:CDS
ATAAATTCATTAACTGCTGA+AGG 0.519495 7.1:+46923487 MS.gene23749:CDS
CTGGCTAGCATGCTGAGACA+TGG 0.519805 7.1:-46925699 None:intergenic
TAACCCATGGATTGTTCTCA+AGG 0.524044 7.1:-46924539 None:intergenic
CCGATCATTGTTGGGAGTGG+TGG 0.525336 7.1:+46923046 MS.gene23749:CDS
GACGTGGGAGAAGGATCAAA+GGG 0.526228 7.1:+46925521 MS.gene23749:CDS
CGGTGTACCAAAATCAGTAA+AGG 0.530148 7.1:-46922975 None:intergenic
TGGCTATCAGGCTGAGACAT+GGG 0.531630 7.1:-46925596 None:intergenic
AGTTATATTTGGTGCTGCAT+TGG 0.533546 7.1:+46924224 MS.gene23749:CDS
GCATCTGAACAAGAATGCTA+TGG 0.538265 7.1:+46924407 MS.gene23749:CDS
AGCCAGAAAGACGTGGGAGG+AGG 0.544096 7.1:+46925920 MS.gene23749:CDS
CCACCACTCCCAACAATGAT+CGG 0.545431 7.1:-46923046 None:intergenic
CATATGAGAACAAAGAATTG+TGG 0.547508 7.1:+46924568 MS.gene23749:CDS
AGACATGTTCCGCAAGCACT+GGG 0.548223 7.1:+46925765 MS.gene23749:CDS
GGAACATGATTACGGTTCTA+CGG 0.552732 7.1:+46922997 MS.gene23749:CDS
TAGCTTGTATGCTGATGTGT+TGG 0.553668 7.1:+46925250 MS.gene23749:CDS
TTGTCATATAATGGGATACA+TGG 0.555297 7.1:+46923918 MS.gene23749:CDS
AGCCAAAGAGACGTGGGAGA+AGG 0.560631 7.1:+46925512 MS.gene23749:CDS
AGCCAGAAAGACGTGGGAGA+AGG 0.560631 7.1:+46925614 MS.gene23749:CDS
TGTAAATGCACAACATTGGT+TGG 0.560698 7.1:-46923823 None:intergenic
GAAGATTGGTTTCTTGAATG+TGG 0.561039 7.1:+46925126 MS.gene23749:CDS
CTGGCTATCAGGCTGAGACA+TGG 0.561329 7.1:-46925597 None:intergenic
CAGATGGTGACAGTTCTATG+AGG 0.561464 7.1:+46924334 MS.gene23749:CDS
TTCTTAGTGAACCCAACACC+GGG 0.562418 7.1:-46923961 None:intergenic
AGAAAGATGCCCAGTGCTTG+CGG 0.564632 7.1:-46925774 None:intergenic
GACGTGGGAGAAGGATCAAA+GGG 0.564696 7.1:+46925725 MS.gene23749:CDS
ATGGCCTTGAGAACAATCCA+TGG 0.565243 7.1:+46924535 MS.gene23749:CDS
AGCCAGAAAGACGTGGGAGA+AGG 0.570261 7.1:+46925716 MS.gene23749:CDS
AATGTTTGATCTTGTTGCGT+TGG 0.571747 7.1:+46925092 MS.gene23749:CDS
AACGTGGGAGAAGGATCAAA+GGG 0.572676 7.1:+46925827 MS.gene23749:CDS
TTGTTGGTGAGGAAATGGTA+AGG 0.572827 7.1:+46923464 MS.gene23749:CDS
TACATGGTGGCTCAGAAGGG+TGG 0.573659 7.1:+46923934 MS.gene23749:CDS
TATCCGATCATTGTTGGGAG+TGG 0.573961 7.1:+46923043 MS.gene23749:CDS
AGAAAGATGCTCAGTGCTTG+CGG 0.575791 7.1:-46925570 None:intergenic
GCAGATGAGTTGTCAGCACA+GGG 0.575960 7.1:-46924785 None:intergenic
GATGAAAGTGAAGGTGATGA+AGG 0.577534 7.1:+46923313 MS.gene23749:CDS
GCCTGATAGCCAGAAAGACG+TGG 0.578633 7.1:+46925607 MS.gene23749:CDS
AATTATACGAAGAATACTCA+AGG 0.584441 7.1:+46923133 MS.gene23749:CDS
CAGTATGTATGCAACAAGCA+GGG 0.584535 7.1:+46923640 MS.gene23749:CDS
AAACGTGGGAGAAGGATCAA+AGG 0.585400 7.1:+46925826 MS.gene23749:CDS
GCCCGATAGCCAAAGAGACG+TGG 0.586320 7.1:+46925505 MS.gene23749:CDS
TTATTTCTGCTTTGGCGATG+TGG 0.587488 7.1:+46924167 MS.gene23749:CDS
CCAAAAGCAGTTGTAACAGA+TGG 0.588696 7.1:+46924318 MS.gene23749:CDS
GATGAAGGTGAACGTGATGA+AGG 0.589312 7.1:+46923283 MS.gene23749:CDS
GGTGATAAAGGTGAAGATGA+TGG 0.589452 7.1:+46923235 MS.gene23749:CDS
GCATGCTAGCCAGAAAGACG+TGG 0.591586 7.1:+46925709 MS.gene23749:CDS
GCATGCTAGCCAGAAAGACG+TGG 0.591586 7.1:+46925913 MS.gene23749:CDS
ATGCGTGCTGTTATTAAGGA+TGG 0.593265 7.1:+46924012 MS.gene23749:CDS
TTTCTTAGTGAACCCAACAC+CGG 0.593472 7.1:-46923962 None:intergenic
GATGAAATTCAAGGTGATGA+AGG 0.597527 7.1:+46923268 MS.gene23749:CDS
GAATATTCTGCCACTGATGA+CGG 0.599778 7.1:+46924099 MS.gene23749:CDS
GAATATTCACAAAAGGAATG+TGG 0.603006 7.1:-46924084 None:intergenic
CTGGCAATGGATCACATATG+TGG 0.606941 7.1:-46925346 None:intergenic
AGTGAATGCGATGAAATTCA+AGG 0.609161 7.1:+46923259 MS.gene23749:CDS
GGAGACAATGAAAGTGATGA+TGG 0.609236 7.1:+46923187 MS.gene23749:intron
AAAGGAATGTGGATCAGTTG+AGG 0.611183 7.1:-46924073 None:intergenic
GGATACATGGTGGCTCAGAA+GGG 0.612576 7.1:+46923931 MS.gene23749:CDS
AACAATAGACACTTATACGT+GGG 0.612595 7.1:+46924257 MS.gene23749:CDS
AATCTGTGCTTTATCTACCT+CGG 0.613894 7.1:-46923866 None:intergenic
TCTGCGTTGTCTTGAACGCG+AGG 0.617404 7.1:+46924803 MS.gene23749:CDS
TTTGCTAGCATACTAAGACA+TGG 0.619682 7.1:-46926068 None:intergenic
GTAAGAAAATGTTCAAACTG+TGG 0.620533 7.1:+46925416 MS.gene23749:CDS
AGGGTGTAAATGCACAACAT+TGG 0.627835 7.1:-46923827 None:intergenic
GAAAGTGAAGGTGATGAAGG+TGG 0.632263 7.1:+46923316 MS.gene23749:CDS
TTTCAAACGTCCGTCATCAG+TGG 0.632560 7.1:-46924109 None:intergenic
AGTATGTATGCAACAAGCAG+GGG 0.634341 7.1:+46923641 MS.gene23749:CDS
TGCACAACATTGGTTGGAGT+AGG 0.634569 7.1:-46923817 None:intergenic
TGTTACTGGAAACTCAACAA+TGG 0.640006 7.1:+46925322 MS.gene23749:CDS
AGATGGTGACAGTTCTATGA+GGG 0.644268 7.1:+46924335 MS.gene23749:CDS
CCCGATAGCCAAAGAGACGT+GGG 0.644492 7.1:+46925506 MS.gene23749:CDS
CTCGTACAAAGTGTCCAGCT+AGG 0.644688 7.1:+46923722 MS.gene23749:CDS
TGGCCTTGAGAACAATCCAT+GGG 0.647038 7.1:+46924536 MS.gene23749:CDS
AGTGAAGGTGATGAAGGTGG+AGG 0.647603 7.1:+46923319 MS.gene23749:CDS
TGGTGACAGTTCTATGAGGG+AGG 0.649015 7.1:+46924338 MS.gene23749:CDS
CAAATATAACTGTTTGTGAG+TGG 0.651904 7.1:-46924212 None:intergenic
TATGAGGGAGGCGATAAAGG+CGG 0.662119 7.1:+46924350 MS.gene23749:CDS
CACCAAAGAAATCGTCACGC+AGG 0.662756 7.1:-46924602 None:intergenic
ATTATACGAAGAATACTCAA+GGG 0.665058 7.1:+46923134 MS.gene23749:CDS
TGATGATGTAGTTGTTGGTG+AGG 0.665725 7.1:+46923453 MS.gene23749:intron
TCATATAATGGGATACATGG+TGG 0.669224 7.1:+46923921 MS.gene23749:CDS
CAAAGGGAGGCAAATCAAAG+AGG 0.670795 7.1:+46925741 MS.gene23749:CDS
CTTGAATGTGGACTATTGTG+GGG 0.678410 7.1:+46925138 MS.gene23749:CDS
GATGATGATGATGTGAGTCA+TGG 0.679569 7.1:+46923109 MS.gene23749:CDS
GGTGAACGTGATGAAGGTGA+AGG 0.680195 7.1:+46923289 MS.gene23749:CDS
CAAAGGGAGGAAAATCAAAG+AGG 0.680357 7.1:+46925537 MS.gene23749:CDS
TTAACGGTGAGATTGTAATG+AGG 0.680367 7.1:+46923617 MS.gene23749:CDS
CCTGATAGCCAGAAAGACGT+GGG 0.690821 7.1:+46925608 MS.gene23749:CDS
CCATTGCCAGTGAAGTGCAA+AGG 0.692298 7.1:+46925359 MS.gene23749:CDS
GCTAGCCAGAAAGACGTGGG+AGG 0.694454 7.1:+46925917 MS.gene23749:CDS
CATGCTAGCCAGAAAGACGT+GGG 0.697336 7.1:+46925710 MS.gene23749:CDS
CATGCTAGCCAGAAAGACGT+GGG 0.697336 7.1:+46925914 MS.gene23749:CDS
AGTGAAGGTCATGCTAGTGA+AGG 0.698593 7.1:+46923364 MS.gene23749:CDS
GGTGGAGGTGATGAAAGTGA+AGG 0.700815 7.1:+46923334 MS.gene23749:CDS
TGTTTATCGGAAAATATCCG+AGG 0.704996 7.1:+46923849 MS.gene23749:CDS
GTGGGAGAAGGATCAAAGGG+AGG 0.706029 7.1:+46925728 MS.gene23749:CDS
GACAATGAAAGTGATGATGG+TGG 0.706532 7.1:+46923190 MS.gene23749:intron
ATTGATGGTCTTCAGTCACA+CGG 0.708259 7.1:+46923886 MS.gene23749:CDS
GTGGGAGAAGGATCAAAGGG+AGG 0.709029 7.1:+46925524 MS.gene23749:CDS
GTGGGAGGAGGATCAAAGGG+AGG 0.710691 7.1:+46925932 MS.gene23749:CDS
AGTGAAGGTGATGAAAGTGA+AGG 0.717258 7.1:+46923349 MS.gene23749:CDS
AAACAATAGACACTTATACG+TGG 0.722689 7.1:+46924256 MS.gene23749:CDS
GGTGAAGGTGATGAAAGTGA+AGG 0.739796 7.1:+46923304 MS.gene23749:CDS
ACTTTGTACGAGTGATACGT+CGG 0.754568 7.1:-46923711 None:intergenic
CAGATGAGTTGTCAGCACAG+GGG 0.773409 7.1:-46924784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTTTTATTATAAGTA+CGG + chr7.1:46923547-46923566 MS.gene23749:CDS 15.0%
!! AAATCAAAAAGAGTTATGTT+AGG + chr7.1:46924661-46924680 MS.gene23749:CDS 20.0%
!! AATAAGAACTTGTCATATAA+TGG + chr7.1:46923909-46923928 MS.gene23749:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG + chr7.1:46923910-46923929 MS.gene23749:CDS 20.0%
!! CTTCAACACAAAAAAAATAT+GGG - chr7.1:46925047-46925066 None:intergenic 20.0%
! AATTATACGAAGAATACTCA+AGG + chr7.1:46923133-46923152 MS.gene23749:CDS 25.0%
! ACTTAACATTCAGATAGTTT+AGG - chr7.1:46924053-46924072 None:intergenic 25.0%
! ATAAATTCATTAACTGCTGA+AGG + chr7.1:46923487-46923506 MS.gene23749:CDS 25.0%
! ATATGAGAACAAAGAATTGT+GGG + chr7.1:46924569-46924588 MS.gene23749:CDS 25.0%
! ATTATACGAAGAATACTCAA+GGG + chr7.1:46923134-46923153 MS.gene23749:CDS 25.0%
! CCTTCAACACAAAAAAAATA+TGG - chr7.1:46925048-46925067 None:intergenic 25.0%
! CTTAACATTCAGATAGTTTA+GGG - chr7.1:46924052-46924071 None:intergenic 25.0%
!! AGCAATGTACTCTAATTTTA+CGG + chr7.1:46924470-46924489 MS.gene23749:CDS 25.0%
!! GAACATTTTCTTACAAACTT+TGG - chr7.1:46925410-46925429 None:intergenic 25.0%
!! TTCTTTGTTCTCATATGTTT+TGG - chr7.1:46924565-46924584 None:intergenic 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG + chr7.1:46924122-46924141 MS.gene23749:CDS 25.0%
!!! CCATATTTTTTTTGTGTTGA+AGG + chr7.1:46925045-46925064 MS.gene23749:intron 25.0%
!!! GTGTTTACAAATTTTTTGCA+GGG + chr7.1:46925211-46925230 MS.gene23749:intron 25.0%
!!! TGTGTTTACAAATTTTTTGC+AGG + chr7.1:46925210-46925229 MS.gene23749:intron 25.0%
AAACAATAGACACTTATACG+TGG + chr7.1:46924256-46924275 MS.gene23749:CDS 30.0%
AAACATATCCGATCATTGTT+GGG + chr7.1:46923038-46923057 MS.gene23749:CDS 30.0%
AACAATAGACACTTATACGT+GGG + chr7.1:46924257-46924276 MS.gene23749:CDS 30.0%
AAGAGTTATGTTAGGAAGAA+AGG + chr7.1:46924669-46924688 MS.gene23749:CDS 30.0%
ACAAAAAAAATATGGGAGCA+TGG - chr7.1:46925040-46925059 None:intergenic 30.0%
AGCATTTATCAAGGTTAGAT+AGG + chr7.1:46923677-46923696 MS.gene23749:CDS 30.0%
CAAATATAACTGTTTGTGAG+TGG - chr7.1:46924215-46924234 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG + chr7.1:46924213-46924232 MS.gene23749:CDS 30.0%
CATATGAGAACAAAGAATTG+TGG + chr7.1:46924568-46924587 MS.gene23749:CDS 30.0%
GAAGTTGACAAAATATCTTG+AGG + chr7.1:46924934-46924953 MS.gene23749:intron 30.0%
GAATATTCACAAAAGGAATG+TGG - chr7.1:46924087-46924106 None:intergenic 30.0%
GTAAGAAAATGTTCAAACTG+TGG + chr7.1:46925416-46925435 MS.gene23749:CDS 30.0%
TATAAGTACGGTAAGTGTAA+TGG + chr7.1:46923559-46923578 MS.gene23749:CDS 30.0%
TGCTCCAAAGAAGAATAAAA+AGG + chr7.1:46925382-46925401 MS.gene23749:CDS 30.0%
TTGACAAAATATCTTGAGGA+GGG + chr7.1:46924938-46924957 MS.gene23749:intron 30.0%
! AAAAATGCGTGCTGTTATTA+AGG + chr7.1:46924008-46924027 MS.gene23749:CDS 30.0%
! AATGTACTCTAATTTTACGG+AGG + chr7.1:46924473-46924492 MS.gene23749:CDS 30.0%
! ACAACATATCTACCCTTTTT+GGG - chr7.1:46923766-46923785 None:intergenic 30.0%
! ACCAGTTTTCTAGATTGTAT+GGG + chr7.1:46924285-46924304 MS.gene23749:CDS 30.0%
! TTGTCATATAATGGGATACA+TGG + chr7.1:46923918-46923937 MS.gene23749:CDS 30.0%
!! AGATCAGATTATTTCTGCTT+TGG + chr7.1:46924159-46924178 MS.gene23749:CDS 30.0%
!! AGGATGAATTTGAAGTGTTT+TGG + chr7.1:46924493-46924512 MS.gene23749:CDS 30.0%
!! ATGAATTTGAAGTGTTTTGG+GGG + chr7.1:46924496-46924515 MS.gene23749:CDS 30.0%
!! GACGTTTGAAATGTCTATTT+TGG + chr7.1:46924121-46924140 MS.gene23749:CDS 30.0%
!! GATGAATTTGAAGTGTTTTG+GGG + chr7.1:46924495-46924514 MS.gene23749:CDS 30.0%
!! GGATGAATTTGAAGTGTTTT+GGG + chr7.1:46924494-46924513 MS.gene23749:CDS 30.0%
!! TTGTAGCTGATTTTAAATCC+AGG + chr7.1:46924754-46924773 MS.gene23749:CDS 30.0%
!!! AACAATGCCTTTACTGATTT+TGG + chr7.1:46922968-46922987 MS.gene23749:CDS 30.0%
!!! AAGAATTCAGCTTTTTTGGA+AGG + chr7.1:46924438-46924457 MS.gene23749:CDS 30.0%
!!! CAGCACAGGTTTTTTTATTT+GGG - chr7.1:46925961-46925980 None:intergenic 30.0%
!!! GTTGTGTCTATTTTTGAAGA+GGG + chr7.1:46923781-46923800 MS.gene23749:CDS 30.0%
!!! TGTCAAGAATTCAGCTTTTT+TGG + chr7.1:46924434-46924453 MS.gene23749:CDS 30.0%
!!! TGTTGTGTCTATTTTTGAAG+AGG + chr7.1:46923780-46923799 MS.gene23749:CDS 30.0%
AAGAATACTCAAGGGAATAC+AGG + chr7.1:46923142-46923161 MS.gene23749:CDS 35.0%
AATCTGTGCTTTATCTACCT+CGG - chr7.1:46923869-46923888 None:intergenic 35.0%
AATGTTTGATCTTGTTGCGT+TGG + chr7.1:46925092-46925111 MS.gene23749:CDS 35.0%
AGTGAAGGTGATGAAAGTTA+AGG + chr7.1:46923379-46923398 MS.gene23749:intron 35.0%
AGTGAATGCGATGAAATTCA+AGG + chr7.1:46923259-46923278 MS.gene23749:CDS 35.0%
AGTGGCAGAATATTCACAAA+AGG - chr7.1:46924094-46924113 None:intergenic 35.0%
CAAGCAATGAACATCTTTCT+GGG + chr7.1:46925675-46925694 MS.gene23749:CDS 35.0%
CAGGAAATTTGAATCTTGAG+GGG + chr7.1:46925012-46925031 MS.gene23749:intron 35.0%
CAGTAACAATTGGAACTTCA+GGG - chr7.1:46925310-46925329 None:intergenic 35.0%
CATTAACTGCTGAAGGAATA+AGG + chr7.1:46923494-46923513 MS.gene23749:CDS 35.0%
CTGTTAGGAAGAGTGATATT+GGG + chr7.1:46923587-46923606 MS.gene23749:CDS 35.0%
GAAACATATCCGATCATTGT+TGG + chr7.1:46923037-46923056 MS.gene23749:CDS 35.0%
GATGAAATTCAAGGTGATGA+AGG + chr7.1:46923268-46923287 MS.gene23749:CDS 35.0%
GATGAGTGATATGATGAAAC+TGG + chr7.1:46923166-46923185 MS.gene23749:intron 35.0%
GCAGGAAATTTGAATCTTGA+GGG + chr7.1:46925011-46925030 MS.gene23749:intron 35.0%
GTAGATAAAGCACAGATTGA+TGG + chr7.1:46923871-46923890 MS.gene23749:CDS 35.0%
GTGAAGGAAAAAGAAGTGAA+TGG + chr7.1:46924896-46924915 MS.gene23749:intron 35.0%
GTTGACAAAATATCTTGAGG+AGG + chr7.1:46924937-46924956 MS.gene23749:intron 35.0%
GTTGAGTTTCCAGTAACAAT+TGG - chr7.1:46925320-46925339 None:intergenic 35.0%
TCCCATACAATCTAGAAAAC+TGG - chr7.1:46924289-46924308 None:intergenic 35.0%
TGCAGGAAATTTGAATCTTG+AGG + chr7.1:46925010-46925029 MS.gene23749:intron 35.0%
TGCATTTACACCCTGTTTAT+CGG + chr7.1:46923836-46923855 MS.gene23749:CDS 35.0%
TGCTGAAGGAATAAGGAAAA+TGG + chr7.1:46923501-46923520 MS.gene23749:CDS 35.0%
TGGATGACATACAAAAGCTT+CGG + chr7.1:46925270-46925289 MS.gene23749:CDS 35.0%
TGTAAATGCACAACATTGGT+TGG - chr7.1:46923826-46923845 None:intergenic 35.0%
TGTTACTGGAAACTCAACAA+TGG + chr7.1:46925322-46925341 MS.gene23749:CDS 35.0%
TGTTTATCGGAAAATATCCG+AGG + chr7.1:46923849-46923868 MS.gene23749:CDS 35.0%
TTAACGGTGAGATTGTAATG+AGG + chr7.1:46923617-46923636 MS.gene23749:CDS 35.0%
TTGATGGAGATTGCTCAATA+TGG + chr7.1:46925175-46925194 MS.gene23749:CDS 35.0%
! CACAACATATCTACCCTTTT+TGG - chr7.1:46923767-46923786 None:intergenic 35.0%
! CACCAGTTTTCTAGATTGTA+TGG + chr7.1:46924284-46924303 MS.gene23749:CDS 35.0%
! CGGATATTTTCCGATAAACA+GGG - chr7.1:46923849-46923868 None:intergenic 35.0%
! GAAGATGATGATGTAGTTGT+TGG + chr7.1:46923448-46923467 MS.gene23749:intron 35.0%
! GGAAGTAGATTCTAAGTTGA+TGG + chr7.1:46925159-46925178 MS.gene23749:CDS 35.0%
! GGTGCCTTTTTATTCTTCTT+TGG - chr7.1:46925389-46925408 None:intergenic 35.0%
! TCATATAATGGGATACATGG+TGG + chr7.1:46923921-46923940 MS.gene23749:CDS 35.0%
! TCGGATATTTTCCGATAAAC+AGG - chr7.1:46923850-46923869 None:intergenic 35.0%
! TCTTGAATGTGGACTATTGT+GGG + chr7.1:46925137-46925156 MS.gene23749:CDS 35.0%
! TTCTTGAATGTGGACTATTG+TGG + chr7.1:46925136-46925155 MS.gene23749:CDS 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG + chr7.1:46924129-46924148 MS.gene23749:CDS 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG + chr7.1:46924224-46924243 MS.gene23749:CDS 35.0%
!! ATTTCTGCACAATTTTGACG+AGG + chr7.1:46924704-46924723 MS.gene23749:CDS 35.0%
!! GAAGATTGGTTTCTTGAATG+TGG + chr7.1:46925126-46925145 MS.gene23749:CDS 35.0%
!! GAGAGAAGAAGCATTTATCA+AGG + chr7.1:46923668-46923687 MS.gene23749:CDS 35.0%
!! GATTATAGTGCTGGTGATAA+AGG + chr7.1:46923223-46923242 MS.gene23749:CDS 35.0%
!! TGAATTTGAAGTGTTTTGGG+GGG + chr7.1:46924497-46924516 MS.gene23749:CDS 35.0%
!!! AGTGTAATGGTTTTGCTGTT+AGG + chr7.1:46923572-46923591 MS.gene23749:CDS 35.0%
!!! CTTTACTGATTTTGGTACAC+CGG + chr7.1:46922976-46922995 MS.gene23749:CDS 35.0%
!!! GCAGCACAGGTTTTTTTATT+TGG - chr7.1:46925962-46925981 None:intergenic 35.0%
!!! TCATATGTTTTGGTAACCCA+TGG - chr7.1:46924555-46924574 None:intergenic 35.0%
AAAAAGACGTTCAGTGTCTG+CGG - chr7.1:46925471-46925490 None:intergenic 40.0%
AAAGGAATGTGGATCAGTTG+AGG - chr7.1:46924076-46924095 None:intergenic 40.0%
ACTTTGTACGAGTGATACGT+CGG - chr7.1:46923714-46923733 None:intergenic 40.0%
AGATGGTGACAGTTCTATGA+GGG + chr7.1:46924335-46924354 MS.gene23749:CDS 40.0%
AGGGTGTAAATGCACAACAT+TGG - chr7.1:46923830-46923849 None:intergenic 40.0%
AGTATGTATGCAACAAGCAG+GGG + chr7.1:46923641-46923660 MS.gene23749:CDS 40.0%
AGTGAAGGTGATGAAAGTGA+AGG + chr7.1:46923349-46923368 MS.gene23749:CDS 40.0%
AGTTAAGGTGATGAAAGCGA+AGG + chr7.1:46923394-46923413 MS.gene23749:intron 40.0%
CAAAGGGAGGAAAATCAAAG+AGG + chr7.1:46925537-46925556 MS.gene23749:CDS 40.0%
CAGTATGTATGCAACAAGCA+GGG + chr7.1:46923640-46923659 MS.gene23749:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG + chr7.1:46924318-46924337 MS.gene23749:CDS 40.0%
CCAGTAACAATTGGAACTTC+AGG - chr7.1:46925311-46925330 None:intergenic 40.0%
CCTGAAGTTCCAATTGTTAC+TGG + chr7.1:46925308-46925327 MS.gene23749:CDS 40.0%
CGCAACAAGATCAAACATTC+TGG - chr7.1:46925091-46925110 None:intergenic 40.0%
CGGTGTACCAAAATCAGTAA+AGG - chr7.1:46922978-46922997 None:intergenic 40.0%
GAATATTCTGCCACTGATGA+CGG + chr7.1:46924099-46924118 MS.gene23749:CDS 40.0%
GATATTGGGCGCAATGTTAA+CGG + chr7.1:46923601-46923620 MS.gene23749:CDS 40.0%
GATGAAAGTGAAGGTGATGA+AGG + chr7.1:46923313-46923332 MS.gene23749:CDS 40.0%
GCAAGCAATGAACATCTTTC+TGG + chr7.1:46925674-46925693 MS.gene23749:CDS 40.0%
GCATCTGAACAAGAATGCTA+TGG + chr7.1:46924407-46924426 MS.gene23749:CDS 40.0%
GCTGTTAGGAAGAGTGATAT+TGG + chr7.1:46923586-46923605 MS.gene23749:CDS 40.0%
GGAACATGATTACGGTTCTA+CGG + chr7.1:46922997-46923016 MS.gene23749:CDS 40.0%
GGAGACAATGAAAGTGATGA+TGG + chr7.1:46923187-46923206 MS.gene23749:intron 40.0%
GGATGACATACAAAAGCTTC+GGG + chr7.1:46925271-46925290 MS.gene23749:CDS 40.0%
GGTGATAAAGGTGAAGATGA+TGG + chr7.1:46923235-46923254 MS.gene23749:CDS 40.0%
GTAGAACCGTAATCATGTTC+CGG - chr7.1:46922998-46923017 None:intergenic 40.0%
GTTCACTACAGACCCAAAAA+GGG + chr7.1:46923751-46923770 MS.gene23749:CDS 40.0%
TGTTCACTACAGACCCAAAA+AGG + chr7.1:46923750-46923769 MS.gene23749:CDS 40.0%
TGTTCTGGTGATTATAGTGC+TGG + chr7.1:46923214-46923233 MS.gene23749:CDS 40.0%
TTTCTTAGTGAACCCAACAC+CGG - chr7.1:46923965-46923984 None:intergenic 40.0%
! AGCATACAAGCTACCCTTTT+TGG - chr7.1:46925243-46925262 None:intergenic 40.0%
! ATGCGTGCTGTTATTAAGGA+TGG + chr7.1:46924012-46924031 MS.gene23749:CDS 40.0%
! ATTGATGGTCTTCAGTCACA+CGG + chr7.1:46923886-46923905 MS.gene23749:CDS 40.0%
! CCATCTGTTACAACTGCTTT+TGG - chr7.1:46924321-46924340 None:intergenic 40.0%
! CTTGAATGTGGACTATTGTG+GGG + chr7.1:46925138-46925157 MS.gene23749:CDS 40.0%
! GATGATGATGATGTGAGTCA+TGG + chr7.1:46923109-46923128 MS.gene23749:CDS 40.0%
! TAACCCATGGATTGTTCTCA+AGG - chr7.1:46924542-46924561 None:intergenic 40.0%
! TAGCTTGTATGCTGATGTGT+TGG + chr7.1:46925250-46925269 MS.gene23749:CDS 40.0%
! TGATGATGTAGTTGTTGGTG+AGG + chr7.1:46923453-46923472 MS.gene23749:intron 40.0%
! TGTAGTTGTTGGTGAGGAAA+TGG + chr7.1:46923459-46923478 MS.gene23749:intron 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG + chr7.1:46923464-46923483 MS.gene23749:CDS 40.0%
!! AATTTTGACGAGGCAATGAG+AGG + chr7.1:46924714-46924733 MS.gene23749:CDS 40.0%
!! GACAATGAAAGTGATGATGG+TGG + chr7.1:46923190-46923209 MS.gene23749:intron 40.0%
!! TTATTTCTGCTTTGGCGATG+TGG + chr7.1:46924167-46924186 MS.gene23749:CDS 40.0%
!! TTTTGGGTCTGTAGTGAACA+CGG - chr7.1:46923750-46923769 None:intergenic 40.0%
!!! TTGCAGCACAGGTCTTTTTT+TGG - chr7.1:46926027-46926046 None:intergenic 40.0%
AAACGTGGGAGAAGGATCAA+AGG + chr7.1:46925826-46925845 MS.gene23749:CDS 45.0%
AACGTGGGAGAAGGATCAAA+GGG + chr7.1:46925827-46925846 MS.gene23749:CDS 45.0%
AGAAAGATGCTCAGTGCTTG+CGG - chr7.1:46925573-46925592 None:intergenic 45.0%
AGTGAAGGTCATGCTAGTGA+AGG + chr7.1:46923364-46923383 MS.gene23749:CDS 45.0%
CAAAGGGAGGCAAATCAAAG+AGG + chr7.1:46925741-46925760 MS.gene23749:CDS 45.0%
CAGATGGTGACAGTTCTATG+AGG + chr7.1:46924334-46924353 MS.gene23749:CDS 45.0%
CATAGACGATGACGCATACT+TGG - chr7.1:46924381-46924400 None:intergenic 45.0%
CATGCTAGCCAGAAAAACGT+GGG + chr7.1:46925812-46925831 MS.gene23749:CDS 45.0%
CGAGGCTGCTGAAATCTATA+CGG + chr7.1:46924821-46924840 MS.gene23749:CDS 45.0%
CTGGCAATGGATCACATATG+TGG - chr7.1:46925349-46925368 None:intergenic 45.0%
CTTGTTGCGTTGGACGAAAA+AGG + chr7.1:46925102-46925121 MS.gene23749:CDS 45.0%
GAAAGTGAAGGTGATGAAGG+TGG + chr7.1:46923316-46923335 MS.gene23749:CDS 45.0%
GATGAAGGTGAACGTGATGA+AGG + chr7.1:46923283-46923302 MS.gene23749:CDS 45.0%
GCAGTATGTATGCAACAAGC+AGG + chr7.1:46923639-46923658 MS.gene23749:CDS 45.0%
GGTACACCGGAACATGATTA+CGG + chr7.1:46922989-46923008 MS.gene23749:CDS 45.0%
GGTGAAGGTGATGAAAGTGA+AGG + chr7.1:46923304-46923323 MS.gene23749:CDS 45.0%
TACCTGCGTGACGATTTCTT+TGG + chr7.1:46924600-46924619 MS.gene23749:CDS 45.0%
TATCCGATCATTGTTGGGAG+TGG + chr7.1:46923043-46923062 MS.gene23749:CDS 45.0%
TGATTACGGTTCTACGGATG+TGG + chr7.1:46923003-46923022 MS.gene23749:CDS 45.0%
TGGACGAAAAAGGCGAAGAT+TGG + chr7.1:46925112-46925131 MS.gene23749:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG + chr7.1:46924347-46924366 MS.gene23749:CDS 45.0%
TTCTTAGTGAACCCAACACC+GGG - chr7.1:46923964-46923983 None:intergenic 45.0%
TTTCAAACGTCCGTCATCAG+TGG - chr7.1:46924112-46924131 None:intergenic 45.0%
! AAGTGTTGCACTGAGTGTGA+AGG + chr7.1:46924880-46924899 MS.gene23749:intron 45.0%
! AGTGTCTGCGGAACATTTTC+TGG - chr7.1:46925459-46925478 None:intergenic 45.0%
! ATATTGACTGCTTGCAGCAC+AGG - chr7.1:46925975-46925994 None:intergenic 45.0%
! ATCCTTCTCCCACGTTTTTC+TGG - chr7.1:46925823-46925842 None:intergenic 45.0%
! ATGGCCTTGAGAACAATCCA+TGG + chr7.1:46924535-46924554 MS.gene23749:CDS 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG - chr7.1:46923813-46923832 None:intergenic 45.0%
! TGCACAACATTGGTTGGAGT+AGG - chr7.1:46923820-46923839 None:intergenic 45.0%
! TGGCCTTGAGAACAATCCAT+GGG + chr7.1:46924536-46924555 MS.gene23749:CDS 45.0%
!! AGTGATGATGGTGGTTGTTC+TGG + chr7.1:46923199-46923218 MS.gene23749:CDS 45.0%
!! TGCAGGGAAGTGTCCAAAAA+GGG + chr7.1:46925227-46925246 MS.gene23749:intron 45.0%
!! TTGCAGGGAAGTGTCCAAAA+AGG + chr7.1:46925226-46925245 MS.gene23749:intron 45.0%
AAGACATGTTCCGCAAGCAC+TGG + chr7.1:46925560-46925579 MS.gene23749:CDS 50.0%
AGAAAGATGCCCAGTGCTTG+CGG - chr7.1:46925777-46925796 None:intergenic 50.0%
AGACATGTTCCGCAAGCACT+GGG + chr7.1:46925561-46925580 MS.gene23749:CDS 50.0%
AGACGTGGGAGAAGGATCAA+AGG + chr7.1:46925520-46925539 MS.gene23749:CDS 50.0%
AGCCAGAAAAACGTGGGAGA+AGG + chr7.1:46925818-46925837 MS.gene23749:CDS 50.0%
AGTGAAGGTGATGAAGGTGG+AGG + chr7.1:46923319-46923338 MS.gene23749:CDS 50.0%
ATCCTTCTCCCACGTCTCTT+TGG - chr7.1:46925517-46925536 None:intergenic 50.0%
ATCCTTCTCCCACGTCTTTC+TGG - chr7.1:46925619-46925638 None:intergenic 50.0%
CACCAAAGAAATCGTCACGC+AGG - chr7.1:46924605-46924624 None:intergenic 50.0%
CAGATGAGTTGTCAGCACAG+GGG - chr7.1:46924787-46924806 None:intergenic 50.0%
CAGCAATTCAGTGTTCGTGC+AGG + chr7.1:46924993-46925012 MS.gene23749:intron 50.0%
CATGCTAGCCAGAAAGACGT+GGG + chr7.1:46925710-46925729 MS.gene23749:CDS 50.0%
CCACCACTCCCAACAATGAT+CGG - chr7.1:46923049-46923068 None:intergenic 50.0%
CCATTGCCAGTGAAGTGCAA+AGG + chr7.1:46925359-46925378 MS.gene23749:CDS 50.0%
CCTGATAGCCAGAAAGACGT+GGG + chr7.1:46925608-46925627 MS.gene23749:CDS 50.0%
CCTTTGCACTTCACTGGCAA+TGG - chr7.1:46925362-46925381 None:intergenic 50.0%
CTGCGTGACGATTTCTTTGG+TGG + chr7.1:46924603-46924622 MS.gene23749:CDS 50.0%
GACGTGGGAGAAGGATCAAA+GGG + chr7.1:46925521-46925540 MS.gene23749:CDS 50.0%
GCAGATGAGTTGTCAGCACA+GGG - chr7.1:46924788-46924807 None:intergenic 50.0%
GCATGCTAGCCAGAAAAACG+TGG + chr7.1:46925811-46925830 MS.gene23749:CDS 50.0%
GGATACATGGTGGCTCAGAA+GGG + chr7.1:46923931-46923950 MS.gene23749:CDS 50.0%
GGTGAACGTGATGAAGGTGA+AGG + chr7.1:46923289-46923308 MS.gene23749:CDS 50.0%
GGTGATGAAAGCGAAGGTCA+TGG + chr7.1:46923400-46923419 MS.gene23749:intron 50.0%
GGTGGAGGTGATGAAAGTGA+AGG + chr7.1:46923334-46923353 MS.gene23749:CDS 50.0%
TATGAGGGAGGCGATAAAGG+CGG + chr7.1:46924350-46924369 MS.gene23749:CDS 50.0%
TCCCACGTCTCTTTGGCTAT+CGG - chr7.1:46925510-46925529 None:intergenic 50.0%
TGCGTCATCGTCTATGTGCT+TGG + chr7.1:46924385-46924404 MS.gene23749:CDS 50.0%
TGGCTAGCATGCTGAGACAT+GGG - chr7.1:46925701-46925720 None:intergenic 50.0%
TGGCTAGCATGCTGAGACAT+TGG - chr7.1:46925701-46925720 None:intergenic 50.0%
TGGCTATCAGGCTGAGACAT+GGG - chr7.1:46925599-46925618 None:intergenic 50.0%
TGGTGACAGTTCTATGAGGG+AGG + chr7.1:46924338-46924357 MS.gene23749:CDS 50.0%
TTGGCTAGCATGCTGAGACA+TGG - chr7.1:46926008-46926027 None:intergenic 50.0%
! AGCGAAGGTCATGGTAGTGA+AGG + chr7.1:46923409-46923428 MS.gene23749:intron 50.0%
! ATGTTGACTGCTTGCAGCAC+AGG - chr7.1:46926038-46926057 None:intergenic 50.0%
! CTCGTACAAAGTGTCCAGCT+AGG + chr7.1:46923722-46923741 MS.gene23749:CDS 50.0%
!! CAAGCACTGGGCATCTTTCT+GGG + chr7.1:46925777-46925796 MS.gene23749:CDS 50.0%
!!! TGAAGTGTTTTGGGGGGACT+TGG + chr7.1:46924503-46924522 MS.gene23749:CDS 50.0%
AAGGGTGGATATCCCGGTGT+TGG + chr7.1:46923949-46923968 MS.gene23749:CDS 55.0%
AGACGTGGGAGGAGGATCAA+AGG + chr7.1:46925928-46925947 MS.gene23749:CDS 55.0%
AGCCAAAGAGACGTGGGAGA+AGG + chr7.1:46925512-46925531 MS.gene23749:CDS 55.0%
AGCCAGAAAGACGTGGGAGA+AGG + chr7.1:46925614-46925633 MS.gene23749:CDS 55.0%
AGGGTGGATATCCCGGTGTT+GGG + chr7.1:46923950-46923969 MS.gene23749:CDS 55.0%
ATCCTCCTCCCACGTCTTTC+TGG - chr7.1:46925925-46925944 None:intergenic 55.0%
CAGCACAGGGGATGAAAACC+TGG - chr7.1:46924775-46924794 None:intergenic 55.0%
CCCACGTCTCTTTGGCTATC+GGG - chr7.1:46925509-46925528 None:intergenic 55.0%
CCCGATAGCCAAAGAGACGT+GGG + chr7.1:46925506-46925525 MS.gene23749:CDS 55.0%
CCGATCATTGTTGGGAGTGG+TGG + chr7.1:46923046-46923065 MS.gene23749:CDS 55.0%
CGCAGATGAGTTGTCAGCAC+AGG - chr7.1:46924789-46924808 None:intergenic 55.0%
CTGGCTAGCATGCTGAGACA+TGG - chr7.1:46925702-46925721 None:intergenic 55.0%
CTGGCTATCAGGCTGAGACA+TGG - chr7.1:46925600-46925619 None:intergenic 55.0%
GACGTGGGAGGAGGATCAAA+GGG + chr7.1:46925929-46925948 MS.gene23749:CDS 55.0%
GCATGCTAGCCAGAAAGACG+TGG + chr7.1:46925709-46925728 MS.gene23749:CDS 55.0%
GCCTGATAGCCAGAAAGACG+TGG + chr7.1:46925607-46925626 MS.gene23749:CDS 55.0%
GCTCAGAAGGGTGGATATCC+CGG + chr7.1:46923943-46923962 MS.gene23749:CDS 55.0%
GGGATACATGGTGGCTCAGA+AGG + chr7.1:46923930-46923949 MS.gene23749:CDS 55.0%
GTGGGAGAAGGATCAAAGGG+AGG + chr7.1:46925524-46925543 MS.gene23749:CDS 55.0%
TACATGGTGGCTCAGAAGGG+TGG + chr7.1:46923934-46923953 MS.gene23749:CDS 55.0%
TAGTGAACACGGAGCCTAGC+TGG - chr7.1:46923739-46923758 None:intergenic 55.0%
TCTGCGTTGTCTTGAACGCG+AGG + chr7.1:46924803-46924822 MS.gene23749:CDS 55.0%
TGGCTATCGGGCTGAGACAT+GGG - chr7.1:46925497-46925516 None:intergenic 55.0%
TTGGCTATCGGGCTGAGACA+TGG - chr7.1:46925498-46925517 None:intergenic 55.0%
! GGAGCACCTTTGCACTTCAC+TGG - chr7.1:46925368-46925387 None:intergenic 55.0%
!! CCCACGTCTTTCTGGCTATC+AGG - chr7.1:46925611-46925630 None:intergenic 55.0%
!! GCAAGCACTGGGCATCTTTC+TGG + chr7.1:46925776-46925795 MS.gene23749:CDS 55.0%
!! GGGGACTTGGTGAGGGAAAA+TGG + chr7.1:46924516-46924535 MS.gene23749:CDS 55.0%
!!! GTTTTGGGGGGACTTGGTGA+GGG + chr7.1:46924509-46924528 MS.gene23749:CDS 55.0%
!!! TGTTTTGGGGGGACTTGGTG+AGG + chr7.1:46924508-46924527 MS.gene23749:CDS 55.0%
AGCCAGAAAGACGTGGGAGG+AGG + chr7.1:46925920-46925939 MS.gene23749:CDS 60.0%
GCCCGATAGCCAAAGAGACG+TGG + chr7.1:46925505-46925524 MS.gene23749:CDS 60.0%
GCTAGCCAGAAAGACGTGGG+AGG + chr7.1:46925713-46925732 MS.gene23749:CDS 60.0%
GTGGGAGGAGGATCAAAGGG+AGG + chr7.1:46925932-46925951 MS.gene23749:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 46922956 46926078 46922956 ID=MS.gene23749
chr7.1 mRNA 46922956 46926078 46922956 ID=MS.gene23749.t1;Parent=MS.gene23749
chr7.1 exon 46922956 46923163 46922956 ID=MS.gene23749.t1.exon1;Parent=MS.gene23749.t1
chr7.1 CDS 46922956 46923163 46922956 ID=cds.MS.gene23749.t1;Parent=MS.gene23749.t1
chr7.1 exon 46923191 46923385 46923191 ID=MS.gene23749.t1.exon2;Parent=MS.gene23749.t1
chr7.1 CDS 46923191 46923385 46923191 ID=cds.MS.gene23749.t1;Parent=MS.gene23749.t1
chr7.1 exon 46923464 46924881 46923464 ID=MS.gene23749.t1.exon3;Parent=MS.gene23749.t1
chr7.1 CDS 46923464 46924881 46923464 ID=cds.MS.gene23749.t1;Parent=MS.gene23749.t1
chr7.1 exon 46925067 46925196 46925067 ID=MS.gene23749.t1.exon4;Parent=MS.gene23749.t1
chr7.1 CDS 46925067 46925196 46925067 ID=cds.MS.gene23749.t1;Parent=MS.gene23749.t1
chr7.1 exon 46925237 46926078 46925237 ID=MS.gene23749.t1.exon5;Parent=MS.gene23749.t1
chr7.1 CDS 46925237 46926078 46925237 ID=cds.MS.gene23749.t1;Parent=MS.gene23749.t1
Gene Sequence

>MS.gene23749

ATGGAAAACAACAACAATGCCTTTACTGATTTTGGTACACCGGAACATGATTACGGTTCTACGGATGTGGATTTGAGTGACGAAACATATCCGATCATTGTTGGGAGTGGTGGTAAATCTACTGAGAATGTTGAACAGAATGTAGATGATGATGATGATGATGATGTGAGTCATGGTAATTATACGAAGAATACTCAAGGGAATACAGGTGATGAGTGATATGATGAAACTGGAGACAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGAATGCGATGAAATTCAAGGTGATGAAGGTGAACGTGATGAAGGTGAAGGTGATGAAAGTGAAGGTGATGAAGGTGGAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGCTAGTGAAGGTGATGAAAGTTAAGGTGATGAAAGCGAAGGTCATGGTAGTGAAGGTGATAACAATTTAGCTGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAAGGAAAATGGAATTTGCGAGTGTTGATGAAGCTTACGATTTTTATTATAAGTACGGTAAGTGTAATGGTTTTGCTGTTAGGAAGAGTGATATTGGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCACCGACGTATCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTGTGTCTATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGTTGTGCATTTACACCCTGTTTATCGGAAAATATCCGAGGTAGATAAAGCACAGATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCCGGTGTTGGGTTCACTAAGAAAGATCTGTACAATTACTTTGACAAAAAAATGCGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCCCTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATGACGGACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCGATGTGGTTGCATTTGACACAACGTACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATCGATGAAACAATAGACACTTATACGTGGGTGTTCACCAGTTTTCTAGATTGTATGGGAAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGACAGTTCTATGAGGGAGGCGATAAAGGCGGTTTTACCAAGTATGCGTCATCGTCTATGTGCTTGGCATCTGAACAAGAATGCTATGGACAATGTCAAGAATTCAGCTTTTTTGGAAGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGGATGAATTTGAAGTGTTTTGGGGGGACTTGGTGAGGGAAAATGGCCTTGAGAACAATCCATGGGTTACCAAAACATATGAGAACAAAGAATTGTGGGAAACTGCATACCTGCGTGACGATTTCTTTGGTGGTATAAGAACTACGTCTCAATGTGAGTCTGTTAATAAAATCAAAAAGAGTTATGTTAGGAAGAAAGGAAACATCTTTGAATTTCTGCACAATTTTGACGAGGCAATGAGAGGCTACAGAAATAACGAACTTGTAGCTGATTTTAAATCCAGGTTTTCATCCCCTGTGCTGACAACTCATCTGCGTTGTCTTGAACGCGAGGCTGCTGAAATCTATACGGCAGAGATCTTTCAAGAAGTGAAAGAAGAGATTATGAAAGTGTTGCACTGAGTGTGAAGGAAAAAGAAGTGAATGGTAACTTGAGAAAAATGAAGTTGACAAAATATCTTGAGGAGGGTGTTTATGAAATTCTATACGATGAGTCGATCTCAGCAATTCAGTGTTCGTGCAGGAAATTTGAATCTTGAGGGGTTCCATGCTCCCATATTTTTTTTGTGTTGAAGGAAGAACGTGCTGAACACATTCCAGAATGTTTGATCTTGTTGCGTTGGACGAAAAAGGCGAAGATTGGTTTCTTGAATGTGGACTATTGTGGGGAAGTAGATTCTAAGTTGATGGAGATTGCTCAATATGGTGCATTATGTAATGTGTTTACAAATTTTTTGCAGGGAAGTGTCCAAAAAGGGTAGCTTGTATGCTGATGTGTTGGATGACATACAAAAGCTTCGGGAAAAGTACGTGAGCCCTGAAGTTCCAATTGTTACTGGAAACTCAACAATGGACCACATATGTGATCCATTGCCAGTGAAGTGCAAAGGTGCTCCAAAGAAGAATAAAAAGGCACCAAAGTTTGTAAGAAAATGTTCAAACTGTGGCAGCAAGCAACATGATGCCAGAAAATGTTCCGCAGACACTGAACGTCTTTTTGTGCCCATGTCTCAGCCCGATAGCCAAAGAGACGTGGGAGAAGGATCAAAGGGAGGAAAATCAAAGAGGAAGACATGTTCCGCAAGCACTGAGCATCTTTCTGTGCCCATGTCTCAGCCTGATAGCCAGAAAGACGTGGGAGAAGGATCACAGAGAGTGAAATCAAAGATAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGTGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGAAGGATCAAAGGGAGGCAAATCAAAGAGGAAGACATGTTCCGCAAGCACTGGGCATCTTTCTGGGCCAATGTCTCAGCATGCTAGCCAGAAAAACGTGGGAGAAGGATCAAAGGGAGTGAAATCAAAGAAAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGGGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGGAGGATCAAAGGGAGGACACCCAAATAAAAAAACCTGTGCTGCAAGCAGTCAATATATTTCTGCGCCCATGTCTCAGCATGCTAGCCAAAAAAAGACCTGTGCTGCAAGCAGTCAACATATTTCTGCGTCCATGTCTTAG
Protein sequence

>MS.gene23749.t1

MENNNNAFTDFGTPEHDYGSTDVDLSDETYPIIVGSGGKSTENVEQNVDDDDDDDVSHGNYTKNTQGNTDNESDDGGCSGDYSAGDKGEDDGSECDEIQGDEGERDEGEGDESEGDEGGGDESEGDESEGHASEVVGEEMVRINSLTAEGIRKMEFASVDEAYDFYYKYGKCNGFAVRKSDIGRNVNGEIVMRQYVCNKQGFREKKHLSRLDRQRDHRRITRTKCPARLRVHYRPKKGRYVVSIFEEGHNHEPTPTNVVHLHPVYRKISEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGVGFTKKDLYNYFDKKMRAVIKDGDVSAALNYLNVKSSTDPHSFCEYSATDDGRLKCLFWADGTSRSDYFCFGDVVAFDTTYNHSQTVIFGAALVIDETIDTYTWVFTSFLDCMGKKLPKAVVTDGDSSMREAIKAVLPSMRHRLCAWHLNKNAMDNVKNSAFLEGFKKAMYSNFTEDEFEVFWGDLVRENGLENNPWVTKTYENKELWETAYLRDDFFGGIRTTSQCESVNKIKKSYVRKKGNIFEFLHNFDEAMRGYRNNELVADFKSRFSSPVLTTHLRCLEREAAEIYTAEIFQEVKEEIMKEERAEHIPECLILLRWTKKAKIGFLNVDYCGEVDSKLMEIAQYVSKKGSLYADVLDDIQKLREKYVSPEVPIVTGNSTMDHICDPLPVKCKGAPKKNKKAPKFVRKCSNCGSKQHDARKCSADTERLFVPMSQPDSQRDVGEGSKGGKSKRKTCSASTEHLSVPMSQPDSQKDVGEGSQRVKSKIKNCSASNEHLSVPMSQHASQKDVGEGSKGGKSKRKTCSASTGHLSGPMSQHASQKNVGEGSKGVKSKKKNCSASNEHLSGPMSQHASQKDVGGGSKGGHPNKKTCAASSQYISAPMSQHASQKKTCAASSQHISASMS