Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23828.t1 | XP_003629092.1 | 92.9 | 170 | 12 | 0 | 1 | 170 | 1 | 170 | 2.60E-85 | 325.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23828.t1 | Q8S9H7 | 52.1 | 48 | 23 | 0 | 103 | 150 | 132 | 179 | 9.8e-09 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23828.t1 | G7L8N4 | 92.9 | 170 | 12 | 0 | 1 | 170 | 1 | 170 | 1.9e-85 | 325.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23828.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23828.t1 | MTR_8g073050 | 90.625 | 224 | 20 | 1 | 1 | 224 | 1 | 223 | 1.76e-128 | 362 |
| MS.gene23828.t1 | MTR_6g043480 | 59.052 | 232 | 84 | 6 | 1 | 224 | 1 | 229 | 1.61e-72 | 220 |
| MS.gene23828.t1 | MTR_6g043490 | 60.086 | 233 | 80 | 6 | 1 | 224 | 1 | 229 | 1.31e-70 | 215 |
| MS.gene23828.t1 | MTR_8g072990 | 53.785 | 251 | 81 | 8 | 1 | 225 | 1 | 242 | 6.54e-65 | 201 |
| MS.gene23828.t1 | MTR_5g027570 | 40.580 | 69 | 41 | 0 | 98 | 166 | 87 | 155 | 5.11e-14 | 68.9 |
| MS.gene23828.t1 | MTR_8g063870 | 31.387 | 137 | 77 | 3 | 87 | 212 | 65 | 195 | 1.76e-12 | 65.5 |
| MS.gene23828.t1 | MTR_2g100930 | 37.895 | 95 | 49 | 2 | 56 | 150 | 72 | 156 | 2.17e-12 | 65.9 |
| MS.gene23828.t1 | MTR_6g092540 | 32.787 | 122 | 64 | 2 | 103 | 224 | 97 | 200 | 2.61e-12 | 65.1 |
| MS.gene23828.t1 | MTR_1g048660 | 41.333 | 75 | 40 | 1 | 104 | 174 | 13 | 87 | 4.09e-12 | 60.8 |
| MS.gene23828.t1 | MTR_4g111975 | 47.170 | 53 | 28 | 0 | 100 | 152 | 135 | 187 | 6.35e-12 | 63.9 |
| MS.gene23828.t1 | MTR_7g067080 | 28.244 | 131 | 82 | 4 | 28 | 150 | 61 | 187 | 6.59e-12 | 63.9 |
| MS.gene23828.t1 | MTR_8g101650 | 49.020 | 51 | 26 | 0 | 103 | 153 | 105 | 155 | 1.25e-11 | 63.2 |
| MS.gene23828.t1 | MTR_5g069710 | 33.333 | 102 | 51 | 2 | 57 | 150 | 87 | 179 | 1.37e-11 | 63.2 |
| MS.gene23828.t1 | MTR_5g081860 | 50.000 | 48 | 24 | 0 | 103 | 150 | 125 | 172 | 1.57e-11 | 62.8 |
| MS.gene23828.t1 | MTR_3g462790 | 50.000 | 48 | 24 | 0 | 103 | 150 | 147 | 194 | 1.60e-11 | 63.2 |
| MS.gene23828.t1 | MTR_4g100630 | 44.262 | 61 | 34 | 0 | 90 | 150 | 82 | 142 | 1.78e-11 | 62.8 |
| MS.gene23828.t1 | MTR_5g037080 | 47.917 | 48 | 25 | 0 | 103 | 150 | 102 | 149 | 4.88e-11 | 61.6 |
| MS.gene23828.t1 | MTR_4g107230 | 34.211 | 76 | 50 | 0 | 74 | 149 | 55 | 130 | 5.10e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23828.t1 | AT3G16350 | 49.153 | 59 | 29 | 1 | 93 | 150 | 126 | 184 | 2.51e-12 | 65.9 |
| MS.gene23828.t1 | AT5G05790 | 47.273 | 55 | 29 | 0 | 95 | 149 | 123 | 177 | 3.44e-12 | 64.7 |
| MS.gene23828.t1 | AT5G05790 | 47.273 | 55 | 29 | 0 | 95 | 149 | 123 | 177 | 3.44e-12 | 64.7 |
| MS.gene23828.t1 | AT5G58900 | 52.083 | 48 | 23 | 0 | 103 | 150 | 141 | 188 | 4.63e-12 | 64.3 |
| MS.gene23828.t1 | AT1G49010 | 47.170 | 53 | 28 | 0 | 100 | 152 | 131 | 183 | 6.18e-12 | 64.3 |
| MS.gene23828.t1 | AT2G38090 | 52.083 | 48 | 23 | 0 | 103 | 150 | 141 | 188 | 8.53e-12 | 63.5 |
| MS.gene23828.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 100 | 152 | 115 | 167 | 1.83e-11 | 62.8 |
| MS.gene23828.t1 | AT1G19000 | 49.091 | 55 | 27 | 1 | 96 | 149 | 94 | 148 | 1.95e-11 | 62.8 |
| MS.gene23828.t1 | AT1G19000 | 49.091 | 55 | 27 | 1 | 96 | 149 | 94 | 148 | 1.95e-11 | 62.8 |
| MS.gene23828.t1 | AT5G61620 | 36.538 | 104 | 47 | 2 | 104 | 207 | 109 | 193 | 2.63e-11 | 62.4 |
| MS.gene23828.t1 | AT3G11280 | 51.064 | 47 | 23 | 0 | 103 | 149 | 127 | 173 | 2.87e-11 | 62.0 |
| MS.gene23828.t1 | AT3G11280 | 51.064 | 47 | 23 | 0 | 103 | 149 | 127 | 173 | 2.87e-11 | 62.0 |
| MS.gene23828.t1 | AT5G01200 | 43.077 | 65 | 30 | 1 | 86 | 150 | 136 | 193 | 3.24e-11 | 61.6 |
| MS.gene23828.t1 | AT5G56840 | 41.270 | 63 | 37 | 0 | 103 | 165 | 91 | 153 | 8.77e-11 | 60.1 |
Find 70 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCATCTGCTCCATATTA+TGG | 0.239375 | 8.4:+31290321 | MS.gene23828:CDS |
| GTTTAAGAACCGTTGCAATT+TGG | 0.286710 | 8.4:-31289450 | None:intergenic |
| CTGCTAGCTTCTCCATAATA+TGG | 0.297489 | 8.4:-31290333 | None:intergenic |
| TTTGAGAATTGGGATGTCTT+TGG | 0.303715 | 8.4:-31289484 | None:intergenic |
| AATTGGGATGTCTTTGGTTC+AGG | 0.316369 | 8.4:-31289478 | None:intergenic |
| GCCGAGCTCCATTTGAGAAT+TGG | 0.325628 | 8.4:-31289495 | None:intergenic |
| AGTTGATTTGGAGCTTCGTT+TGG | 0.335545 | 8.4:+31290428 | MS.gene23828:CDS |
| GGTGTTGATGGCGGTGAGTC+AGG | 0.341872 | 8.4:-31289250 | None:intergenic |
| TCTCAAATGGAGCTCGGCTC+AGG | 0.344453 | 8.4:+31289500 | MS.gene23828:CDS |
| CTGATGGGGCTGATTGAGTA+TGG | 0.344517 | 8.4:+31290123 | MS.gene23828:CDS |
| TGGATTTGATGGTGAAGATT+AGG | 0.352596 | 8.4:-31289328 | None:intergenic |
| GGATTTGATGGTGAAGATTA+GGG | 0.375321 | 8.4:-31289327 | None:intergenic |
| CCGAGCTCCATTTGAGAATT+GGG | 0.377504 | 8.4:-31289494 | None:intergenic |
| TGATGAGTTCCTGTTTCTCT+TGG | 0.391375 | 8.4:-31290304 | None:intergenic |
| CTCTTGGAAGCAGAGTTGTT+GGG | 0.392834 | 8.4:-31290288 | None:intergenic |
| GGCCAACCGGTAGCGATTTG+AGG | 0.396177 | 8.4:-31289406 | None:intergenic |
| TCTCTTGGAAGCAGAGTTGT+TGG | 0.416850 | 8.4:-31290289 | None:intergenic |
| GTAAGATCAATGATCTCAAT+AGG | 0.418602 | 8.4:-31289220 | None:intergenic |
| ACTCTGCTTCCAAGAGAAAC+AGG | 0.420387 | 8.4:+31290295 | MS.gene23828:CDS |
| GCCAACCGGTAGCGATTTGA+GGG | 0.420964 | 8.4:-31289405 | None:intergenic |
| TAGTTTGGTGTTGGAGGTGA+TGG | 0.426613 | 8.4:-31289348 | None:intergenic |
| GTTGATTTGGAGCTTCGTTT+GGG | 0.430693 | 8.4:+31290429 | MS.gene23828:CDS |
| GTGGTACAAACAAGGTAGTT+TGG | 0.433356 | 8.4:-31289363 | None:intergenic |
| GGAGCAAAATTAAGAATTGT+TGG | 0.439969 | 8.4:-31289292 | None:intergenic |
| GCTGTGATACATGTCAGGTT+GGG | 0.447382 | 8.4:-31289428 | None:intergenic |
| GATAAAGATACAGGTGTTGA+TGG | 0.448047 | 8.4:-31289262 | None:intergenic |
| GTTGGAGGTGATGGATTTGA+TGG | 0.449743 | 8.4:-31289339 | None:intergenic |
| AAGATTAGGGTTGGTAGAAA+CGG | 0.455787 | 8.4:-31289314 | None:intergenic |
| GTCTCAAATCCTGGAGGTGG+TGG | 0.457263 | 8.4:-31289382 | None:intergenic |
| GGGCTGATTGAGTATGGAAA+AGG | 0.458465 | 8.4:+31290129 | MS.gene23828:CDS |
| GAGCTCGGCTCAGGGTTCCT+TGG | 0.459714 | 8.4:+31289509 | MS.gene23828:CDS |
| CATGTCAGGTTGGGGCCAAC+CGG | 0.463630 | 8.4:-31289419 | None:intergenic |
| GATGTCTTTGGTTCAGGTAA+CGG | 0.466372 | 8.4:-31289472 | None:intergenic |
| ATTTGAGGGGTCTCAAATCC+TGG | 0.485120 | 8.4:-31289391 | None:intergenic |
| TTGAGTATGGAAAAGGGAAA+TGG | 0.487269 | 8.4:+31290136 | MS.gene23828:CDS |
| GGCTGTGATACATGTCAGGT+TGG | 0.490510 | 8.4:-31289429 | None:intergenic |
| AGTGCTTGCTTCATAGTTGT+TGG | 0.490843 | 8.4:-31290367 | None:intergenic |
| AGATTAGGGTTGGTAGAAAC+GGG | 0.494754 | 8.4:-31289313 | None:intergenic |
| ACAAGGTAGTTTGGTGTTGG+AGG | 0.496753 | 8.4:-31289354 | None:intergenic |
| CCTAGTGCTTCTGCTGGTGA+TGG | 0.499343 | 8.4:+31290402 | MS.gene23828:CDS |
| CCACAACAAGTTAAAAGCTA+TGG | 0.499837 | 8.4:+31290195 | MS.gene23828:CDS |
| TGGTGATGGAGAAGTTGATT+TGG | 0.503382 | 8.4:+31290416 | MS.gene23828:CDS |
| AAGACATCCCAATTCTCAAA+TGG | 0.506263 | 8.4:+31289487 | MS.gene23828:CDS |
| GGTACATTAGATAAAGATAC+AGG | 0.517255 | 8.4:-31289271 | None:intergenic |
| CAAACAAGGTAGTTTGGTGT+TGG | 0.522907 | 8.4:-31289357 | None:intergenic |
| GGGGTCTCAAATCCTGGAGG+TGG | 0.526295 | 8.4:-31289385 | None:intergenic |
| CTCAAATGGAGCTCGGCTCA+GGG | 0.530252 | 8.4:+31289501 | MS.gene23828:CDS |
| CCCAATTCTCAAATGGAGCT+CGG | 0.531404 | 8.4:+31289494 | MS.gene23828:CDS |
| AGAAGCACTAGGCGGAGTCA+TGG | 0.531695 | 8.4:-31290391 | None:intergenic |
| ATTTGGCTGTGATACATGTC+AGG | 0.537702 | 8.4:-31289433 | None:intergenic |
| GAGACCCCTCAAATCGCTAC+CGG | 0.540565 | 8.4:+31289400 | MS.gene23828:CDS |
| TTGTTTGTACCACCACCTCC+AGG | 0.546643 | 8.4:+31289373 | MS.gene23828:CDS |
| GGCTGATTGAGTATGGAAAA+GGG | 0.548425 | 8.4:+31290130 | MS.gene23828:CDS |
| ACTCCGCCTAGTGCTTCTGC+TGG | 0.556890 | 8.4:+31290396 | MS.gene23828:CDS |
| CCATCACCAGCAGAAGCACT+AGG | 0.558115 | 8.4:-31290402 | None:intergenic |
| AAACCATGCACAAATGTGGC+TGG | 0.559050 | 8.4:-31290240 | None:intergenic |
| CTGTGATACATGTCAGGTTG+GGG | 0.560230 | 8.4:-31289427 | None:intergenic |
| GTGTTGATGGCGGTGAGTCA+GGG | 0.562040 | 8.4:-31289249 | None:intergenic |
| TTGATGGTGAAGATTAGGGT+TGG | 0.562857 | 8.4:-31289323 | None:intergenic |
| CCTAAAACCATGCACAAATG+TGG | 0.569308 | 8.4:-31290244 | None:intergenic |
| CTACCAGCCACATTTGTGCA+TGG | 0.576832 | 8.4:+31290237 | MS.gene23828:CDS |
| CCCCTCAAATCGCTACCGGT+TGG | 0.595096 | 8.4:+31289404 | MS.gene23828:CDS |
| TCATGCTCTAATTGACTCCA+AGG | 0.607425 | 8.4:-31289526 | None:intergenic |
| TGGAGGTGGTGGTACAAACA+AGG | 0.619969 | 8.4:-31289371 | None:intergenic |
| CATGCACAAATGTGGCTGGT+AGG | 0.633937 | 8.4:-31290236 | None:intergenic |
| AAAGATACAGGTGTTGATGG+CGG | 0.678925 | 8.4:-31289259 | None:intergenic |
| GTATCACAGCCAAATTGCAA+CGG | 0.684681 | 8.4:+31289441 | MS.gene23828:CDS |
| CCAACCGGTAGCGATTTGAG+GGG | 0.703939 | 8.4:-31289404 | None:intergenic |
| TGAGGGGTCTCAAATCCTGG+AGG | 0.731817 | 8.4:-31289388 | None:intergenic |
| TCACCAGCAGAAGCACTAGG+CGG | 0.753286 | 8.4:-31290399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAGTCATTAAATT+TGG | - | chr8.4:31289893-31289912 | None:intergenic | 10.0% |
| !! | ATATCAATAGTAAAATTTAA+CGG | - | chr8.4:31290039-31290058 | None:intergenic | 10.0% |
| !! | TATCAATAGTAAAATTTAAC+GGG | - | chr8.4:31290038-31290057 | None:intergenic | 15.0% |
| !! | AAATTGCGATAAAAATTTAG+AGG | + | chr8.4:31289624-31289643 | MS.gene23828:intron | 20.0% |
| !! | ATAATCTATGAAAGAGTAAT+TGG | - | chr8.4:31289982-31290001 | None:intergenic | 20.0% |
| !!! | TATTTTAGCTTATTTCTGAT+GGG | + | chr8.4:31290108-31290127 | MS.gene23828:intron | 20.0% |
| !!! | TTATTTTAGCTTATTTCTGA+TGG | + | chr8.4:31290107-31290126 | MS.gene23828:intron | 20.0% |
| ! | TGTCAGAAAAATAATAGCTA+CGG | - | chr8.4:31289694-31289713 | None:intergenic | 25.0% |
| ! | TTGAAATAGCCACAAATATT+TGG | + | chr8.4:31289812-31289831 | MS.gene23828:intron | 25.0% |
| ! | TTTCTTTCTCCAAATATTTG+TGG | - | chr8.4:31289824-31289843 | None:intergenic | 25.0% |
| !!! | ATTTTAGCTTATTTCTGATG+GGG | + | chr8.4:31290109-31290128 | MS.gene23828:intron | 25.0% |
| AAATAACTGCGGATTTAATG+AGG | - | chr8.4:31289741-31289760 | None:intergenic | 30.0% | |
| AGAGAAAGTTGAAATAACTG+CGG | - | chr8.4:31289752-31289771 | None:intergenic | 30.0% | |
| GGAGCAAAATTAAGAATTGT+TGG | - | chr8.4:31289295-31289314 | None:intergenic | 30.0% | |
| GGTACATTAGATAAAGATAC+AGG | - | chr8.4:31289274-31289293 | None:intergenic | 30.0% | |
| GTAAGATCAATGATCTCAAT+AGG | - | chr8.4:31289223-31289242 | None:intergenic | 30.0% | |
| TATAAAGTAATGTGCAAGCA+TGG | + | chr8.4:31289999-31290018 | MS.gene23828:intron | 30.0% | |
| AAGACATCCCAATTCTCAAA+TGG | + | chr8.4:31289487-31289506 | MS.gene23828:CDS | 35.0% | |
| CCACAACAAGTTAAAAGCTA+TGG | + | chr8.4:31290195-31290214 | MS.gene23828:CDS | 35.0% | |
| GTTTAAGAACCGTTGCAATT+TGG | - | chr8.4:31289453-31289472 | None:intergenic | 35.0% | |
| TCATCATCTGCTCCATATTA+TGG | + | chr8.4:31290321-31290340 | MS.gene23828:CDS | 35.0% | |
| TTGAGTATGGAAAAGGGAAA+TGG | + | chr8.4:31290136-31290155 | MS.gene23828:CDS | 35.0% | |
| TTTGAGAATTGGGATGTCTT+TGG | - | chr8.4:31289487-31289506 | None:intergenic | 35.0% | |
| !! | AAGATTAGGGTTGGTAGAAA+CGG | - | chr8.4:31289317-31289336 | None:intergenic | 35.0% |
| !! | GATAAAGATACAGGTGTTGA+TGG | - | chr8.4:31289265-31289284 | None:intergenic | 35.0% |
| !! | GGATTTGATGGTGAAGATTA+GGG | - | chr8.4:31289330-31289349 | None:intergenic | 35.0% |
| !! | TGGATTTGATGGTGAAGATT+AGG | - | chr8.4:31289331-31289350 | None:intergenic | 35.0% |
| !!! | CCATAGCTTTTAACTTGTTG+TGG | - | chr8.4:31290198-31290217 | None:intergenic | 35.0% |
| !!! | TTGTGCATGGTTTTAGGAAA+AGG | + | chr8.4:31290250-31290269 | MS.gene23828:CDS | 35.0% |
| AGTGCTTGCTTCATAGTTGT+TGG | - | chr8.4:31290370-31290389 | None:intergenic | 40.0% | |
| ATTTGGCTGTGATACATGTC+AGG | - | chr8.4:31289436-31289455 | None:intergenic | 40.0% | |
| CCTAAAACCATGCACAAATG+TGG | - | chr8.4:31290247-31290266 | None:intergenic | 40.0% | |
| GGCTGATTGAGTATGGAAAA+GGG | + | chr8.4:31290130-31290149 | MS.gene23828:CDS | 40.0% | |
| GTATCACAGCCAAATTGCAA+CGG | + | chr8.4:31289441-31289460 | MS.gene23828:CDS | 40.0% | |
| GTGGTACAAACAAGGTAGTT+TGG | - | chr8.4:31289366-31289385 | None:intergenic | 40.0% | |
| ! | AATTGGGATGTCTTTGGTTC+AGG | - | chr8.4:31289481-31289500 | None:intergenic | 40.0% |
| ! | CCACATTTGTGCATGGTTTT+AGG | + | chr8.4:31290244-31290263 | MS.gene23828:CDS | 40.0% |
| ! | CTGCTAGCTTCTCCATAATA+TGG | - | chr8.4:31290336-31290355 | None:intergenic | 40.0% |
| ! | GATGTCTTTGGTTCAGGTAA+CGG | - | chr8.4:31289475-31289494 | None:intergenic | 40.0% |
| ! | TCATGCTCTAATTGACTCCA+AGG | - | chr8.4:31289529-31289548 | None:intergenic | 40.0% |
| ! | TGATGAGTTCCTGTTTCTCT+TGG | - | chr8.4:31290307-31290326 | None:intergenic | 40.0% |
| !! | AAAGATACAGGTGTTGATGG+CGG | - | chr8.4:31289262-31289281 | None:intergenic | 40.0% |
| !! | AGATTAGGGTTGGTAGAAAC+GGG | - | chr8.4:31289316-31289335 | None:intergenic | 40.0% |
| !! | AGTTGATTTGGAGCTTCGTT+TGG | + | chr8.4:31290428-31290447 | MS.gene23828:CDS | 40.0% |
| !! | CAAACAAGGTAGTTTGGTGT+TGG | - | chr8.4:31289360-31289379 | None:intergenic | 40.0% |
| !! | GTTGATTTGGAGCTTCGTTT+GGG | + | chr8.4:31290429-31290448 | MS.gene23828:CDS | 40.0% |
| !! | TGGTGATGGAGAAGTTGATT+TGG | + | chr8.4:31290416-31290435 | MS.gene23828:CDS | 40.0% |
| !! | TTGATGGTGAAGATTAGGGT+TGG | - | chr8.4:31289326-31289345 | None:intergenic | 40.0% |
| AAACCATGCACAAATGTGGC+TGG | - | chr8.4:31290243-31290262 | None:intergenic | 45.0% | |
| ACTCTGCTTCCAAGAGAAAC+AGG | + | chr8.4:31290295-31290314 | MS.gene23828:CDS | 45.0% | |
| ATTTGAGGGGTCTCAAATCC+TGG | - | chr8.4:31289394-31289413 | None:intergenic | 45.0% | |
| CCCAATTCTCAAATGGAGCT+CGG | + | chr8.4:31289494-31289513 | MS.gene23828:CDS | 45.0% | |
| CCGAGCTCCATTTGAGAATT+GGG | - | chr8.4:31289497-31289516 | None:intergenic | 45.0% | |
| CTCTTGGAAGCAGAGTTGTT+GGG | - | chr8.4:31290291-31290310 | None:intergenic | 45.0% | |
| GCTGTGATACATGTCAGGTT+GGG | - | chr8.4:31289431-31289450 | None:intergenic | 45.0% | |
| GGGCTGATTGAGTATGGAAA+AGG | + | chr8.4:31290129-31290148 | MS.gene23828:CDS | 45.0% | |
| TCTCTTGGAAGCAGAGTTGT+TGG | - | chr8.4:31290292-31290311 | None:intergenic | 45.0% | |
| ! | CTGTGATACATGTCAGGTTG+GGG | - | chr8.4:31289430-31289449 | None:intergenic | 45.0% |
| !! | ACAAGGTAGTTTGGTGTTGG+AGG | - | chr8.4:31289357-31289376 | None:intergenic | 45.0% |
| !! | GTTGGAGGTGATGGATTTGA+TGG | - | chr8.4:31289342-31289361 | None:intergenic | 45.0% |
| !! | TAGTTTGGTGTTGGAGGTGA+TGG | - | chr8.4:31289351-31289370 | None:intergenic | 45.0% |
| !! | AAAAAATTAATCATTAAATT+TGG | - | chr8.4:31289652-31289671 | None:intergenic | 5.0% |
| CATGCACAAATGTGGCTGGT+AGG | - | chr8.4:31290239-31290258 | None:intergenic | 50.0% | |
| CTACCAGCCACATTTGTGCA+TGG | + | chr8.4:31290237-31290256 | MS.gene23828:CDS | 50.0% | |
| CTGATGGGGCTGATTGAGTA+TGG | + | chr8.4:31290123-31290142 | MS.gene23828:CDS | 50.0% | |
| GCCGAGCTCCATTTGAGAAT+TGG | - | chr8.4:31289498-31289517 | None:intergenic | 50.0% | |
| GGCTGTGATACATGTCAGGT+TGG | - | chr8.4:31289432-31289451 | None:intergenic | 50.0% | |
| TTGTTTGTACCACCACCTCC+AGG | + | chr8.4:31289373-31289392 | MS.gene23828:CDS | 50.0% | |
| ! | TGGAGGTGGTGGTACAAACA+AGG | - | chr8.4:31289374-31289393 | None:intergenic | 50.0% |
| CCAACCGGTAGCGATTTGAG+GGG | - | chr8.4:31289407-31289426 | None:intergenic | 55.0% | |
| CCTAGTGCTTCTGCTGGTGA+TGG | + | chr8.4:31290402-31290421 | MS.gene23828:CDS | 55.0% | |
| CTCAAATGGAGCTCGGCTCA+GGG | + | chr8.4:31289501-31289520 | MS.gene23828:CDS | 55.0% | |
| GAGACCCCTCAAATCGCTAC+CGG | + | chr8.4:31289400-31289419 | MS.gene23828:CDS | 55.0% | |
| GCCAACCGGTAGCGATTTGA+GGG | - | chr8.4:31289408-31289427 | None:intergenic | 55.0% | |
| GTCTCAAATCCTGGAGGTGG+TGG | - | chr8.4:31289385-31289404 | None:intergenic | 55.0% | |
| TCTCAAATGGAGCTCGGCTC+AGG | + | chr8.4:31289500-31289519 | MS.gene23828:CDS | 55.0% | |
| TGAGGGGTCTCAAATCCTGG+AGG | - | chr8.4:31289391-31289410 | None:intergenic | 55.0% | |
| !! | AGAAGCACTAGGCGGAGTCA+TGG | - | chr8.4:31290394-31290413 | None:intergenic | 55.0% |
| !! | CCATCACCAGCAGAAGCACT+AGG | - | chr8.4:31290405-31290424 | None:intergenic | 55.0% |
| !! | GTGTTGATGGCGGTGAGTCA+GGG | - | chr8.4:31289252-31289271 | None:intergenic | 55.0% |
| !! | TCACCAGCAGAAGCACTAGG+CGG | - | chr8.4:31290402-31290421 | None:intergenic | 55.0% |
| ACTCCGCCTAGTGCTTCTGC+TGG | + | chr8.4:31290396-31290415 | MS.gene23828:CDS | 60.0% | |
| CCCCTCAAATCGCTACCGGT+TGG | + | chr8.4:31289404-31289423 | MS.gene23828:CDS | 60.0% | |
| GGCCAACCGGTAGCGATTTG+AGG | - | chr8.4:31289409-31289428 | None:intergenic | 60.0% | |
| GGGGTCTCAAATCCTGGAGG+TGG | - | chr8.4:31289388-31289407 | None:intergenic | 60.0% | |
| !! | CATGTCAGGTTGGGGCCAAC+CGG | - | chr8.4:31289422-31289441 | None:intergenic | 60.0% |
| !! | GGTGTTGATGGCGGTGAGTC+AGG | - | chr8.4:31289253-31289272 | None:intergenic | 60.0% |
| GAGCTCGGCTCAGGGTTCCT+TGG | + | chr8.4:31289509-31289528 | MS.gene23828:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 31289217 | 31290461 | 31289217 | ID=MS.gene23828 |
| chr8.4 | mRNA | 31289217 | 31290461 | 31289217 | ID=MS.gene23828.t1;Parent=MS.gene23828 |
| chr8.4 | exon | 31289217 | 31289548 | 31289217 | ID=MS.gene23828.t1.exon1;Parent=MS.gene23828.t1 |
| chr8.4 | CDS | 31289217 | 31289548 | 31289217 | ID=cds.MS.gene23828.t1;Parent=MS.gene23828.t1 |
| chr8.4 | exon | 31290116 | 31290461 | 31290116 | ID=MS.gene23828.t1.exon2;Parent=MS.gene23828.t1 |
| chr8.4 | CDS | 31290116 | 31290461 | 31290116 | ID=cds.MS.gene23828.t1;Parent=MS.gene23828.t1 |
| Gene Sequence |
| Protein sequence |
