Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23905.t1 | XP_013457259.2 | 96.2 | 133 | 5 | 0 | 78 | 210 | 77 | 209 | 2.50E-58 | 235.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23905.t1 | P42777 | 47.7 | 155 | 57 | 3 | 79 | 209 | 113 | 267 | 4.1e-17 | 89.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23905.t1 | A0A072UZK7 | 94.5 | 110 | 6 | 0 | 78 | 187 | 77 | 186 | 1.8e-45 | 192.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene23905.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23905.t1 | MTR_4g094390 | 96.791 | 187 | 5 | 1 | 1 | 187 | 1 | 186 | 1.73e-132 | 370 |
MS.gene23905.t1 | MTR_1g098590 | 40.500 | 200 | 67 | 4 | 36 | 197 | 43 | 228 | 1.67e-27 | 104 |
MS.gene23905.t1 | MTR_1g098590 | 39.791 | 191 | 63 | 4 | 36 | 188 | 43 | 219 | 5.63e-24 | 95.1 |
MS.gene23905.t1 | MTR_1g098590 | 38.462 | 195 | 68 | 4 | 36 | 192 | 43 | 223 | 3.01e-23 | 93.6 |
MS.gene23905.t1 | MTR_3g010660 | 36.646 | 161 | 82 | 5 | 54 | 210 | 176 | 320 | 2.50e-17 | 79.0 |
MS.gene23905.t1 | MTR_8g043960 | 29.856 | 278 | 99 | 11 | 1 | 206 | 54 | 307 | 2.62e-17 | 79.0 |
MS.gene23905.t1 | MTR_7g088090 | 48.421 | 95 | 35 | 2 | 118 | 210 | 236 | 318 | 2.00e-15 | 73.9 |
MS.gene23905.t1 | MTR_2g086390 | 30.165 | 242 | 104 | 8 | 1 | 187 | 35 | 266 | 1.13e-14 | 71.2 |
MS.gene23905.t1 | MTR_3g101780 | 38.095 | 147 | 77 | 5 | 73 | 210 | 288 | 429 | 1.12e-13 | 69.3 |
MS.gene23905.t1 | MTR_2g086390 | 34.211 | 152 | 61 | 3 | 78 | 191 | 120 | 270 | 1.48e-13 | 68.2 |
MS.gene23905.t1 | MTR_5g088230 | 30.151 | 199 | 87 | 6 | 36 | 210 | 92 | 262 | 1.56e-13 | 67.8 |
MS.gene23905.t1 | MTR_5g088230 | 30.151 | 199 | 87 | 6 | 36 | 210 | 97 | 267 | 1.73e-13 | 67.8 |
MS.gene23905.t1 | MTR_7g104480 | 37.903 | 124 | 65 | 2 | 72 | 189 | 286 | 403 | 5.92e-13 | 67.0 |
MS.gene23905.t1 | MTR_4g085910 | 58.333 | 60 | 23 | 1 | 119 | 178 | 291 | 348 | 1.48e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23905.t1 | AT1G03970 | 42.408 | 191 | 102 | 4 | 27 | 209 | 77 | 267 | 9.47e-33 | 119 |
MS.gene23905.t1 | AT5G44080 | 57.143 | 98 | 39 | 2 | 115 | 209 | 215 | 312 | 3.32e-25 | 100 |
MS.gene23905.t1 | AT2G41070 | 32.365 | 241 | 106 | 8 | 1 | 210 | 46 | 260 | 3.14e-23 | 94.0 |
MS.gene23905.t1 | AT2G41070 | 32.365 | 241 | 106 | 8 | 1 | 210 | 46 | 260 | 3.14e-23 | 94.0 |
MS.gene23905.t1 | AT2G41070 | 32.365 | 241 | 106 | 8 | 1 | 210 | 46 | 260 | 3.14e-23 | 94.0 |
MS.gene23905.t1 | AT2G41070 | 32.365 | 241 | 106 | 8 | 1 | 210 | 55 | 269 | 4.31e-23 | 94.0 |
MS.gene23905.t1 | AT2G41070 | 31.050 | 219 | 99 | 7 | 1 | 188 | 46 | 243 | 2.77e-18 | 80.5 |
MS.gene23905.t1 | AT3G56850 | 31.878 | 229 | 77 | 7 | 36 | 210 | 92 | 295 | 7.96e-18 | 80.1 |
MS.gene23905.t1 | AT1G49720 | 45.161 | 93 | 50 | 1 | 99 | 190 | 279 | 371 | 1.35e-15 | 74.7 |
MS.gene23905.t1 | AT1G49720 | 45.161 | 93 | 50 | 1 | 99 | 190 | 279 | 371 | 1.35e-15 | 74.7 |
MS.gene23905.t1 | AT1G45249 | 46.809 | 94 | 48 | 1 | 117 | 210 | 323 | 414 | 5.80e-15 | 73.2 |
MS.gene23905.t1 | AT1G45249 | 46.809 | 94 | 48 | 1 | 117 | 210 | 338 | 429 | 6.99e-15 | 72.8 |
MS.gene23905.t1 | AT1G45249 | 46.809 | 94 | 48 | 1 | 117 | 210 | 338 | 429 | 6.99e-15 | 72.8 |
MS.gene23905.t1 | AT1G49720 | 40.404 | 99 | 58 | 1 | 99 | 196 | 279 | 377 | 1.65e-14 | 71.6 |
MS.gene23905.t1 | AT2G36270 | 46.237 | 93 | 45 | 1 | 117 | 209 | 342 | 429 | 1.85e-14 | 71.6 |
MS.gene23905.t1 | AT2G36270 | 46.237 | 93 | 45 | 1 | 117 | 209 | 342 | 429 | 1.85e-14 | 71.6 |
MS.gene23905.t1 | AT3G19290 | 41.758 | 91 | 53 | 0 | 99 | 189 | 320 | 410 | 3.95e-14 | 70.9 |
MS.gene23905.t1 | AT3G19290 | 41.758 | 91 | 53 | 0 | 99 | 189 | 320 | 410 | 3.95e-14 | 70.9 |
MS.gene23905.t1 | AT2G36270 | 50.000 | 72 | 36 | 0 | 117 | 188 | 342 | 413 | 4.87e-14 | 70.5 |
MS.gene23905.t1 | AT3G19290 | 45.000 | 80 | 44 | 0 | 99 | 178 | 320 | 399 | 2.10e-13 | 68.6 |
MS.gene23905.t1 | AT4G34000 | 40.000 | 100 | 55 | 2 | 103 | 197 | 345 | 444 | 2.15e-13 | 68.6 |
MS.gene23905.t1 | AT3G19290 | 45.000 | 80 | 44 | 0 | 99 | 178 | 320 | 399 | 2.29e-13 | 68.6 |
MS.gene23905.t1 | AT4G34000 | 43.820 | 89 | 50 | 0 | 103 | 191 | 345 | 433 | 6.20e-13 | 67.4 |
MS.gene23905.t1 | AT4G34000 | 43.820 | 89 | 50 | 0 | 103 | 191 | 345 | 433 | 6.20e-13 | 67.4 |
MS.gene23905.t1 | AT4G34000 | 43.820 | 89 | 50 | 0 | 103 | 191 | 345 | 433 | 6.20e-13 | 67.4 |
MS.gene23905.t1 | AT4G35900 | 39.474 | 114 | 64 | 4 | 70 | 180 | 153 | 264 | 2.18e-12 | 65.1 |
MS.gene23905.t1 | AT1G45249 | 41.905 | 105 | 48 | 2 | 117 | 210 | 323 | 425 | 4.70e-12 | 64.7 |
MS.gene23905.t1 | AT2G17770 | 53.030 | 66 | 30 | 1 | 115 | 180 | 110 | 174 | 1.68e-11 | 61.2 |
Find 38 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCTTGGCTGCTCCGTAAT+TGG | 0.232529 | 4.4:-20300985 | None:intergenic |
AGTTACTCTTGAAGATTTCT+TGG | 0.260165 | 4.4:+20299160 | MS.gene23905:CDS |
ACAACAACATTGACGATGTT+TGG | 0.318773 | 4.4:+20299027 | MS.gene23905:CDS |
CGAGAGTCTGGTTAAGCATT+TGG | 0.319992 | 4.4:+20299524 | MS.gene23905:CDS |
TCACAATGTTTAAGATGAAT+TGG | 0.320013 | 4.4:-20301028 | None:intergenic |
GATCTCCGCAGTTTCCGTTT+TGG | 0.329576 | 4.4:-20301006 | None:intergenic |
GCATTCTCTTCAAGTTGCTC+TGG | 0.330483 | 4.4:+20299253 | MS.gene23905:CDS |
CATCATCCTTCTTCTGATGA+AGG | 0.402693 | 4.4:+20299104 | MS.gene23905:CDS |
TAAGCAGTTAGAAGAAGAAC+AGG | 0.427848 | 4.4:+20299557 | MS.gene23905:CDS |
TACTACTGAGCTCGAGAGTC+TGG | 0.437471 | 4.4:+20299512 | MS.gene23905:CDS |
CATTCTCTTCAAGTTGCTCT+GGG | 0.438517 | 4.4:+20299254 | MS.gene23905:CDS |
AGAGTTCCTCATTCCAATTA+CGG | 0.439899 | 4.4:+20300972 | MS.gene23905:CDS |
TCCGCTTGCGGTGCCGGTGG+TGG | 0.444416 | 4.4:+20299131 | MS.gene23905:CDS |
GAAGATTTCTTGGTGAAAGC+TGG | 0.461983 | 4.4:+20299170 | MS.gene23905:CDS |
GGATATTGATGATGAGGGTA+AGG | 0.482476 | 4.4:-20299200 | None:intergenic |
TAATTGGAATGAGGAACTCT+TGG | 0.483829 | 4.4:-20300969 | None:intergenic |
TTTGCAGCTTCAATTGCAGC+AGG | 0.488695 | 4.4:-20298954 | None:intergenic |
ACATCATCAAGAACATCATC+AGG | 0.493627 | 4.4:+20298980 | MS.gene23905:CDS |
GAAGAAGGATATTGATGATG+AGG | 0.495238 | 4.4:-20299206 | None:intergenic |
TAGGTCAAGAGAACGCAAAC+AGG | 0.503030 | 4.4:+20299361 | MS.gene23905:CDS |
TCTTCTTCCGCCGTCGACGA+CGG | 0.504781 | 4.4:+20299227 | MS.gene23905:CDS |
AATGTTGTTGATGATGAAGA+TGG | 0.522633 | 4.4:-20299079 | None:intergenic |
CGGAGCAGCCAAGACCAAAA+CGG | 0.551589 | 4.4:+20300992 | MS.gene23905:CDS |
GTTCTTGAGAATTTCGTCCA+TGG | 0.557554 | 4.4:-20298925 | None:intergenic |
ACCACCACCGGCACCGCAAG+CGG | 0.560420 | 4.4:-20299132 | None:intergenic |
AAGAAGGATATTGATGATGA+GGG | 0.569465 | 4.4:-20299205 | None:intergenic |
AGTAACTTCATCACCACCAC+CGG | 0.570376 | 4.4:-20299144 | None:intergenic |
CAACATTGACGATGTTTGGA+CGG | 0.572596 | 4.4:+20299031 | MS.gene23905:CDS |
TGGACGGACATCGTCGCTGA+AGG | 0.582794 | 4.4:+20299047 | MS.gene23905:CDS |
AGAATGCGAACCGTCGTCGA+CGG | 0.586672 | 4.4:-20299237 | None:intergenic |
TCGACGGCGGAAGAAGAAGA+AGG | 0.601454 | 4.4:-20299221 | None:intergenic |
ATGCGAACCGTCGTCGACGG+CGG | 0.608033 | 4.4:-20299234 | None:intergenic |
GCTGCTCCGTAATTGGAATG+AGG | 0.608548 | 4.4:-20300978 | None:intergenic |
ACGGACATCGTCGCTGAAGG+TGG | 0.610001 | 4.4:+20299050 | MS.gene23905:CDS |
AGAATCGTGAGTCTGCTGCT+AGG | 0.625043 | 4.4:+20299342 | MS.gene23905:CDS |
TTGCAGCTTCAATTGCAGCA+GGG | 0.635761 | 4.4:-20298953 | None:intergenic |
CAAGACCAAAACGGAAACTG+CGG | 0.643716 | 4.4:+20301001 | MS.gene23905:CDS |
TGTTATGAATGCAGGCTGAG+AGG | 0.701918 | 4.4:+20299854 | MS.gene23905:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAATAAATTATAAGATTTA+AGG | - | chr4.4:20299827-20299846 | None:intergenic | 10.0% |
!!! | GTCTATTTTTTATTTTTTTT+TGG | - | chr4.4:20300736-20300755 | None:intergenic | 10.0% |
!!! | TTATAATATTTTAATAACTG+TGG | + | chr4.4:20300026-20300045 | MS.gene23905:intron | 10.0% |
!! | AATGAAAAATGTTGTAAATT+TGG | + | chr4.4:20300085-20300104 | MS.gene23905:intron | 15.0% |
!! | ACAAATTGAACAATAATAAG+AGG | - | chr4.4:20300927-20300946 | None:intergenic | 20.0% |
!! | ATATTGAACAACAAAAATCA+TGG | - | chr4.4:20300615-20300634 | None:intergenic | 20.0% |
!! | CATATTAACAGAAGTAATTA+TGG | - | chr4.4:20300481-20300500 | None:intergenic | 20.0% |
!!! | ATTTTTGTTGTTCAATATAC+AGG | + | chr4.4:20300617-20300636 | MS.gene23905:intron | 20.0% |
!!! | TACAAAAGATTTTCACATTT+TGG | + | chr4.4:20300885-20300904 | MS.gene23905:intron | 20.0% |
!!! | TATTAATGTGTTGTGTTTTT+TGG | + | chr4.4:20299620-20299639 | MS.gene23905:intron | 20.0% |
!!! | TGTAGATCATTATTTTTGTT+TGG | + | chr4.4:20300656-20300675 | MS.gene23905:intron | 20.0% |
!!! | TTTTGTATAAAGCTAAAAAC+CGG | - | chr4.4:20300872-20300891 | None:intergenic | 20.0% |
!!! | TTTTTGTTGTTCAATATACA+GGG | + | chr4.4:20300618-20300637 | MS.gene23905:intron | 20.0% |
! | AAATATGAAAAAAAGTGACC+AGG | + | chr4.4:20300121-20300140 | MS.gene23905:intron | 25.0% |
! | AAGTACAGAACATATTTCAA+TGG | - | chr4.4:20300380-20300399 | None:intergenic | 25.0% |
! | ACAACACTGTCTTAAAATTT+AGG | - | chr4.4:20300840-20300859 | None:intergenic | 25.0% |
! | ACAAGTCTAATTTAGTTGTT+TGG | - | chr4.4:20300703-20300722 | None:intergenic | 25.0% |
! | AGAAATGACAAAACAAAGAA+AGG | - | chr4.4:20299406-20299425 | None:intergenic | 25.0% |
! | AGTCAAAAAACCATAAAAGA+GGG | - | chr4.4:20299685-20299704 | None:intergenic | 25.0% |
! | CAAAAAAGAATCAACTAGTA+AGG | - | chr4.4:20299780-20299799 | None:intergenic | 25.0% |
! | GTAGAAAAACATAATGAGTA+TGG | - | chr4.4:20300161-20300180 | None:intergenic | 25.0% |
! | TAATATTGTGTTATGAATGC+AGG | + | chr4.4:20299846-20299865 | MS.gene23905:intron | 25.0% |
! | TAGTCAAAAAACCATAAAAG+AGG | - | chr4.4:20299686-20299705 | None:intergenic | 25.0% |
! | TTCAAATTGATCAGATTAAG+TGG | - | chr4.4:20299926-20299945 | None:intergenic | 25.0% |
! | TTGTTGAATGATTGAAATTG+TGG | + | chr4.4:20299472-20299491 | MS.gene23905:intron | 25.0% |
!! | ATAAAAGTTTGAAACTTCCT+TGG | + | chr4.4:20299705-20299724 | MS.gene23905:intron | 25.0% |
!! | ATAAATTTCTCCCTCTTTTA+TGG | + | chr4.4:20299672-20299691 | MS.gene23905:intron | 25.0% |
!!! | AGACTTGTTGTTAATTAAGT+TGG | + | chr4.4:20300752-20300771 | MS.gene23905:intron | 25.0% |
ACAACAAAAATCATGGTCAT+TGG | - | chr4.4:20300608-20300627 | None:intergenic | 30.0% | |
AGAGGGAGAAATTTATAGAA+AGG | - | chr4.4:20299668-20299687 | None:intergenic | 30.0% | |
AGTTACTCTTGAAGATTTCT+TGG | + | chr4.4:20299160-20299179 | MS.gene23905:CDS | 30.0% | |
CTCTATGTACTAGTAGTTAT+TGG | - | chr4.4:20300312-20300331 | None:intergenic | 30.0% | |
GAAATTGTGGTGTAATTTAC+AGG | + | chr4.4:20299485-20299504 | MS.gene23905:intron | 30.0% | |
GTACATAACTTCATCTAAGT+AGG | + | chr4.4:20299993-20300012 | MS.gene23905:intron | 30.0% | |
TACAACCTTCTTCCAAAAAA+TGG | + | chr4.4:20300178-20300197 | MS.gene23905:intron | 30.0% | |
TACTCAAATTCAATTCACCA+AGG | - | chr4.4:20299725-20299744 | None:intergenic | 30.0% | |
! | AATGTTGTTGTTGTTGTTGT+TGG | - | chr4.4:20299018-20299037 | None:intergenic | 30.0% |
! | ACACGTCAAAGAACTTATTT+TGG | - | chr4.4:20300412-20300431 | None:intergenic | 30.0% |
!! | AAGAAGGATATTGATGATGA+GGG | - | chr4.4:20299208-20299227 | None:intergenic | 30.0% |
!! | AATGTTGTTGATGATGAAGA+TGG | - | chr4.4:20299082-20299101 | None:intergenic | 30.0% |
!! | TAATGATACCTTTGGAACTT+TGG | + | chr4.4:20300785-20300804 | MS.gene23905:intron | 30.0% |
!!! | AAGAACTTATTTTGGCATTC+TGG | - | chr4.4:20300404-20300423 | None:intergenic | 30.0% |
AAAATCATGGTCATTGGTCA+TGG | - | chr4.4:20300602-20300621 | None:intergenic | 35.0% | |
AACTACTAGTACATAGAGCA+GGG | + | chr4.4:20300314-20300333 | MS.gene23905:intron | 35.0% | |
ACAACAACATTGACGATGTT+TGG | + | chr4.4:20299027-20299046 | MS.gene23905:CDS | 35.0% | |
ACATCATCAAGAACATCATC+AGG | + | chr4.4:20298980-20298999 | MS.gene23905:CDS | 35.0% | |
AGAGTTCCTCATTCCAATTA+CGG | + | chr4.4:20300972-20300991 | MS.gene23905:CDS | 35.0% | |
CTGCAGTTTAATGATACCTT+TGG | + | chr4.4:20300777-20300796 | MS.gene23905:intron | 35.0% | |
GAAAAACCTTCATCAGAAGA+AGG | - | chr4.4:20299113-20299132 | None:intergenic | 35.0% | |
GGGAGAAATTTATAGAAAGG+TGG | - | chr4.4:20299665-20299684 | None:intergenic | 35.0% | |
TAACTACTAGTACATAGAGC+AGG | + | chr4.4:20300313-20300332 | MS.gene23905:intron | 35.0% | |
TAAGCAGTTAGAAGAAGAAC+AGG | + | chr4.4:20299557-20299576 | MS.gene23905:CDS | 35.0% | |
TAATTGGAATGAGGAACTCT+TGG | - | chr4.4:20300972-20300991 | None:intergenic | 35.0% | |
!! | GAAGAAGGATATTGATGATG+AGG | - | chr4.4:20299209-20299228 | None:intergenic | 35.0% |
AAGAACAGGTGCGGTTATAT+TGG | + | chr4.4:20299571-20299590 | MS.gene23905:intron | 40.0% | |
ACTACTAGTACATAGAGCAG+GGG | + | chr4.4:20300315-20300334 | MS.gene23905:intron | 40.0% | |
AGTTAGAAGAAGAACAGGTG+CGG | + | chr4.4:20299562-20299581 | MS.gene23905:intron | 40.0% | |
CAACATTGACGATGTTTGGA+CGG | + | chr4.4:20299031-20299050 | MS.gene23905:CDS | 40.0% | |
CATCATCCTTCTTCTGATGA+AGG | + | chr4.4:20299104-20299123 | MS.gene23905:CDS | 40.0% | |
CCTTCTTCCAAAAAATGGTC+TGG | + | chr4.4:20300183-20300202 | MS.gene23905:intron | 40.0% | |
CTTTCAAAGTTCAAGCAGGA+AGG | - | chr4.4:20300556-20300575 | None:intergenic | 40.0% | |
GAAGATTTCTTGGTGAAAGC+TGG | + | chr4.4:20299170-20299189 | MS.gene23905:CDS | 40.0% | |
TACACAAAAGTTGAGGCTTG+AGG | + | chr4.4:20300058-20300077 | MS.gene23905:intron | 40.0% | |
TCAGCTGTACACAAAAGTTG+AGG | + | chr4.4:20300051-20300070 | MS.gene23905:intron | 40.0% | |
!! | CATTCTCTTCAAGTTGCTCT+GGG | + | chr4.4:20299254-20299273 | MS.gene23905:CDS | 40.0% |
!! | GATACCTTTGGAACTTTGGT+GGG | + | chr4.4:20300789-20300808 | MS.gene23905:intron | 40.0% |
!! | GGATATTGATGATGAGGGTA+AGG | - | chr4.4:20299203-20299222 | None:intergenic | 40.0% |
!! | TGATACCTTTGGAACTTTGG+TGG | + | chr4.4:20300788-20300807 | MS.gene23905:intron | 40.0% |
!! | TGGTGCTGTTTAGTTCATAG+AGG | - | chr4.4:20300582-20300601 | None:intergenic | 40.0% |
!!! | CCAGACCATTTTTTGGAAGA+AGG | - | chr4.4:20300186-20300205 | None:intergenic | 40.0% |
!!! | GTATGCACCAGACCATTTTT+TGG | - | chr4.4:20300193-20300212 | None:intergenic | 40.0% |
ACATCCCACCAAAGTTCCAA+AGG | - | chr4.4:20300796-20300815 | None:intergenic | 45.0% | |
AGTAACTTCATCACCACCAC+CGG | - | chr4.4:20299147-20299166 | None:intergenic | 45.0% | |
CAAGACCAAAACGGAAACTG+CGG | + | chr4.4:20301001-20301020 | MS.gene23905:CDS | 45.0% | |
CGAGAGTCTGGTTAAGCATT+TGG | + | chr4.4:20299524-20299543 | MS.gene23905:CDS | 45.0% | |
CTACTAGTACATAGAGCAGG+GGG | + | chr4.4:20300316-20300335 | MS.gene23905:intron | 45.0% | |
GACGCTTTCAAAGTTCAAGC+AGG | - | chr4.4:20300560-20300579 | None:intergenic | 45.0% | |
TAGGTCAAGAGAACGCAAAC+AGG | + | chr4.4:20299361-20299380 | MS.gene23905:CDS | 45.0% | |
TGTTATGAATGCAGGCTGAG+AGG | + | chr4.4:20299854-20299873 | MS.gene23905:intron | 45.0% | |
TTGCAGCTTCAATTGCAGCA+GGG | - | chr4.4:20298956-20298975 | None:intergenic | 45.0% | |
TTTGCAGCTTCAATTGCAGC+AGG | - | chr4.4:20298957-20298976 | None:intergenic | 45.0% | |
! | ACAGTGTTGTTCACATGCAC+CGG | + | chr4.4:20300850-20300869 | MS.gene23905:intron | 45.0% |
! | GATGAAGGTTTTTCCGCTTG+CGG | + | chr4.4:20299119-20299138 | MS.gene23905:CDS | 45.0% |
!! | GCATTCTCTTCAAGTTGCTC+TGG | + | chr4.4:20299253-20299272 | MS.gene23905:CDS | 45.0% |
AGAATCGTGAGTCTGCTGCT+AGG | + | chr4.4:20299342-20299361 | MS.gene23905:CDS | 50.0% | |
AGGCTGAGAGGAAAAAGCTG+AGG | + | chr4.4:20299866-20299885 | MS.gene23905:intron | 50.0% | |
GCTGCTCCGTAATTGGAATG+AGG | - | chr4.4:20300981-20301000 | None:intergenic | 50.0% | |
TACTACTGAGCTCGAGAGTC+TGG | + | chr4.4:20299512-20299531 | MS.gene23905:CDS | 50.0% | |
! | GATCTCCGCAGTTTCCGTTT+TGG | - | chr4.4:20301009-20301028 | None:intergenic | 50.0% |
!! | CGCAGTTTCCGTTTTGGTCT+TGG | - | chr4.4:20301003-20301022 | None:intergenic | 50.0% |
AGAATGCGAACCGTCGTCGA+CGG | - | chr4.4:20299240-20299259 | None:intergenic | 55.0% | |
AGTGACCAGGTGCATGAGAG+TGG | + | chr4.4:20300134-20300153 | MS.gene23905:intron | 55.0% | |
ATGGTCCACTCTCATGCACC+TGG | - | chr4.4:20300142-20300161 | None:intergenic | 55.0% | |
CGGAGCAGCCAAGACCAAAA+CGG | + | chr4.4:20300992-20301011 | MS.gene23905:CDS | 55.0% | |
GGTCTTGGCTGCTCCGTAAT+TGG | - | chr4.4:20300988-20301007 | None:intergenic | 55.0% | |
TCGACGGCGGAAGAAGAAGA+AGG | - | chr4.4:20299224-20299243 | None:intergenic | 55.0% | |
ACGGACATCGTCGCTGAAGG+TGG | + | chr4.4:20299050-20299069 | MS.gene23905:CDS | 60.0% | |
TCTTCTTCCGCCGTCGACGA+CGG | + | chr4.4:20299227-20299246 | MS.gene23905:CDS | 60.0% | |
TGGACGGACATCGTCGCTGA+AGG | + | chr4.4:20299047-20299066 | MS.gene23905:CDS | 60.0% | |
! | GGTTTTTCCGCTTGCGGTGC+CGG | + | chr4.4:20299125-20299144 | MS.gene23905:CDS | 60.0% |
ATGCGAACCGTCGTCGACGG+CGG | - | chr4.4:20299237-20299256 | None:intergenic | 65.0% | |
!! | TTTTCCGCTTGCGGTGCCGG+TGG | + | chr4.4:20299128-20299147 | MS.gene23905:CDS | 65.0% |
ACCACCACCGGCACCGCAAG+CGG | - | chr4.4:20299135-20299154 | None:intergenic | 70.0% | |
!! | TCCGCTTGCGGTGCCGGTGG+TGG | + | chr4.4:20299131-20299150 | MS.gene23905:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 20298927 | 20301041 | 20298927 | ID=MS.gene23905 |
chr4.4 | mRNA | 20298927 | 20301041 | 20298927 | ID=MS.gene23905.t1;Parent=MS.gene23905 |
chr4.4 | exon | 20298927 | 20299382 | 20298927 | ID=MS.gene23905.t1.exon1;Parent=MS.gene23905.t1 |
chr4.4 | CDS | 20298927 | 20299382 | 20298927 | ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1 |
chr4.4 | exon | 20299507 | 20299578 | 20299507 | ID=MS.gene23905.t1.exon2;Parent=MS.gene23905.t1 |
chr4.4 | CDS | 20299507 | 20299578 | 20299507 | ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1 |
chr4.4 | exon | 20299868 | 20299897 | 20299868 | ID=MS.gene23905.t1.exon3;Parent=MS.gene23905.t1 |
chr4.4 | CDS | 20299868 | 20299897 | 20299868 | ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1 |
chr4.4 | exon | 20300967 | 20301041 | 20300967 | ID=MS.gene23905.t1.exon4;Parent=MS.gene23905.t1 |
chr4.4 | CDS | 20300967 | 20301041 | 20300967 | ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1 |
Gene Sequence |
Protein sequence |