AlfalfaGEDB | MS.gene23905

M. sativa cultivar XinJiangDaYe / MS.gene23905

KEGG: K14432
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23905.t1	XP_013457259.2	96.2	133	5	0	78	210	77	209	2.50E-58	235.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23905.t1	P42777	47.7	155	57	3	79	209	113	267	4.1e-17	89.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23905.t1	A0A072UZK7	94.5	110	6	0	78	187	77	186	1.8e-45	192.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23905.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23905.t1	MTR_4g094390	96.791	187	5	1	1	187	1	186	1.73e-132	370
MS.gene23905.t1	MTR_1g098590	40.500	200	67	4	36	197	43	228	1.67e-27	104
MS.gene23905.t1	MTR_1g098590	39.791	191	63	4	36	188	43	219	5.63e-24	95.1
MS.gene23905.t1	MTR_1g098590	38.462	195	68	4	36	192	43	223	3.01e-23	93.6
MS.gene23905.t1	MTR_3g010660	36.646	161	82	5	54	210	176	320	2.50e-17	79.0
MS.gene23905.t1	MTR_8g043960	29.856	278	99	11	1	206	54	307	2.62e-17	79.0
MS.gene23905.t1	MTR_7g088090	48.421	95	35	2	118	210	236	318	2.00e-15	73.9
MS.gene23905.t1	MTR_2g086390	30.165	242	104	8	1	187	35	266	1.13e-14	71.2
MS.gene23905.t1	MTR_3g101780	38.095	147	77	5	73	210	288	429	1.12e-13	69.3
MS.gene23905.t1	MTR_2g086390	34.211	152	61	3	78	191	120	270	1.48e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23905.t1	AT1G03970	42.408	191	102	4	27	209	77	267	9.47e-33	119
MS.gene23905.t1	AT5G44080	57.143	98	39	2	115	209	215	312	3.32e-25	100
MS.gene23905.t1	AT2G41070	32.365	241	106	8	1	210	46	260	3.14e-23	94.0
MS.gene23905.t1	AT2G41070	32.365	241	106	8	1	210	46	260	3.14e-23	94.0
MS.gene23905.t1	AT2G41070	32.365	241	106	8	1	210	46	260	3.14e-23	94.0
MS.gene23905.t1	AT2G41070	32.365	241	106	8	1	210	55	269	4.31e-23	94.0
MS.gene23905.t1	AT2G41070	31.050	219	99	7	1	188	46	243	2.77e-18	80.5
MS.gene23905.t1	AT3G56850	31.878	229	77	7	36	210	92	295	7.96e-18	80.1
MS.gene23905.t1	AT1G49720	45.161	93	50	1	99	190	279	371	1.35e-15	74.7
MS.gene23905.t1	AT1G49720	45.161	93	50	1	99	190	279	371	1.35e-15	74.7

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Find 38 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGGATATTGATGATGA+GGG	0.569465	4.4:-20299205	None:intergenic
AATGTTGTTGATGATGAAGA+TGG	0.522633	4.4:-20299079	None:intergenic
ACAACAACATTGACGATGTT+TGG	0.318773	4.4:+20299027	MS.gene23905:CDS
ACATCATCAAGAACATCATC+AGG	0.493627	4.4:+20298980	MS.gene23905:CDS
ACCACCACCGGCACCGCAAG+CGG	0.560420	4.4:-20299132	None:intergenic
ACGGACATCGTCGCTGAAGG+TGG	0.610001	4.4:+20299050	MS.gene23905:CDS
AGAATCGTGAGTCTGCTGCT+AGG	0.625043	4.4:+20299342	MS.gene23905:CDS
AGAATGCGAACCGTCGTCGA+CGG	0.586672	4.4:-20299237	None:intergenic
AGAGTTCCTCATTCCAATTA+CGG	0.439899	4.4:+20300972	MS.gene23905:CDS
AGTAACTTCATCACCACCAC+CGG	0.570376	4.4:-20299144	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAAAAATCATGGTCAT+TGG	-	chr4.4:20300608-20300627	None:intergenic	30.0%
AGAGGGAGAAATTTATAGAA+AGG	-	chr4.4:20299668-20299687	None:intergenic	30.0%
AGTTACTCTTGAAGATTTCT+TGG	+	chr4.4:20299160-20299179	MS.gene23905:CDS	30.0%
CTCTATGTACTAGTAGTTAT+TGG	-	chr4.4:20300312-20300331	None:intergenic	30.0%
GAAATTGTGGTGTAATTTAC+AGG	+	chr4.4:20299485-20299504	MS.gene23905:intron	30.0%
GTACATAACTTCATCTAAGT+AGG	+	chr4.4:20299993-20300012	MS.gene23905:intron	30.0%
TACAACCTTCTTCCAAAAAA+TGG	+	chr4.4:20300178-20300197	MS.gene23905:intron	30.0%
TACTCAAATTCAATTCACCA+AGG	-	chr4.4:20299725-20299744	None:intergenic	30.0%
AAAATCATGGTCATTGGTCA+TGG	-	chr4.4:20300602-20300621	None:intergenic	35.0%
AACTACTAGTACATAGAGCA+GGG	+	chr4.4:20300314-20300333	MS.gene23905:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	20298927	20301041	20298927	ID=MS.gene23905
chr4.4	mRNA	20298927	20301041	20298927	ID=MS.gene23905.t1;Parent=MS.gene23905
chr4.4	exon	20298927	20299382	20298927	ID=MS.gene23905.t1.exon1;Parent=MS.gene23905.t1
chr4.4	CDS	20298927	20299382	20298927	ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1
chr4.4	exon	20299507	20299578	20299507	ID=MS.gene23905.t1.exon2;Parent=MS.gene23905.t1
chr4.4	CDS	20299507	20299578	20299507	ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1
chr4.4	exon	20299868	20299897	20299868	ID=MS.gene23905.t1.exon3;Parent=MS.gene23905.t1
chr4.4	CDS	20299868	20299897	20299868	ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1
chr4.4	exon	20300967	20301041	20300967	ID=MS.gene23905.t1.exon4;Parent=MS.gene23905.t1
chr4.4	CDS	20300967	20301041	20300967	ID=cds.MS.gene23905.t1;Parent=MS.gene23905.t1

Gene Sequence

>MS.gene23905

ATGGACGAAATTCTCAAGAACATTTTCCCTGCTGCAATTGAAGCTGCAAAACAACATCATCAAGAACATCATCAGGAAGAACAACAATCCAACAACAACAACAACAACATTGACGATGTTTGGACGGACATCGTCGCTGAAGGTGGTGCAAACCATCTTCATCATCAACAACATTATCATCATCCTTCTTCTGATGAAGGTTTTTCCGCTTGCGGTGCCGGTGGTGGTGATGAAGTTACTCTTGAAGATTTCTTGGTGAAAGCTGGTGCTGTTCCTTACCCTCATCATCAATATCCTTCTTCTTCTTCCGCCGTCGACGACGGTTCGCATTCTCTTCAAGTTGCTCTGGGAAAACGAAAGACTGTTGATGAAACGCTTGATAAAGCTGCTCTTCAGAAACAGAAAAGAATGATCAAGAATCGTGAGTCTGCTGCTAGGTCAAGAGAACGCAAACAGGTTTCTTTATCTCATTCTTTCCTTTCTTTGTTTTGTCATTTCTTTATAAAAAGTTTATTATAGTATATACATTGTTTAATCTTGAATTGTTGTTGAATGATTGAAATTGTGGTGTAATTTACAGGCTTATACTACTGAGCTCGAGAGTCTGGTTAAGCATTTGGAGATAGAAAATAAGCAGTTAGAAGAAGAACAGGTGCGGTTATATTGGTTATTGTTATTGTTATGCATTTCATTTATTAATGTGTTGTGTTTTTTGGTAAAATATTGTTATTGATACCACCTTTCTATAAATTTCTCCCTCTTTTATGGTTTTTTGACTATAAAAGTTTGAAACTTCCTTGGTGAATTGAATTTGAGTAACATCTTTTTGCTATAATAACTCTTTAATTTTCCTTACTAGTTGATTCTTTTTTGCTGTTCTTTTGTTTAACTTTTGTGCCTTAAATCTTATAATTTATTGTAATATTGTGTTATGAATGCAGGCTGAGAGGAAAAAGCTGAGGCTCAAACAAGTATGTATATCTGCTCAATTTTTTACCACTTAATCTGATCAATTTGAAATTGTCATGCATTTCTATTTATATATTTCAATTTTCTACAAGAACATGTACATAACTTCATCTAAGTAGGTAAATTCAACTTATAATATTTTAATAACTGTGGATTCAGCTGTACACAAAAGTTGAGGCTTGAGGTTAAAATGAAAAATGTTGTAAATTTGGATGTTATCAAATCAAATATGAAAAAAAGTGACCAGGTGCATGAGAGTGGACCATACTCATTATGTTTTTCTACAACCTTCTTCCAAAAAATGGTCTGGTGCATACAGTATACACAATAACTTTACTATACTACATATGTCTTAACTATACATGTGTCATCACAAATCGATCTAAAAATTGTCTTATCAATGTTAATATTTTCCAATAACTACTAGTACATAGAGCAGGGGGCATACATACAACTTGAGCATTGAACTTTCATTGAAGTACCATTGAAATATGTTCTGTACTTTCCAGAATGCCAAAATAAGTTCTTTGACGTGTACTGTACTCTATTTCACTTAAAACTTTACATTTAATTTCATTGTCATCTTAATTACTTCTGTTAATATGATTATTGTCTTAACCATAATTACTTCTGTTAATATGACAACATACTATTCTTCCTTCCTGCTTGAACTTTGAAAGCGTCCTCTATGAACTAAACAGCACCATGACCAATGACCATGATTTTTGTTGTTCAATATACAGGGCTTAGTATATTGCATTGTAGATCATTATTTTTGTTTGGAATATGCAAAGCTCACTTAAACCAAACAACTAAATTAGACTTGTTAATTGTATACCAAAAAAAAATAAAAAATAGACTTGTTGTTAATTAAGTTGGATCTGCAGTTTAATGATACCTTTGGAACTTTGGTGGGATGTGATATTTGCAATACTTCATCACCTAAATTTTAAGACAGTGTTGTTCACATGCACCGGTTTTTAGCTTTATACAAAAGATTTTCACATTTTGGCTATATATGAATCTAACCTCTTATTATTGTTCAATTTGTTTTTTGTTTTTATTTTGTAGCTCCAAGAGTTCCTCATTCCAATTACGGAGCAGCCAAGACCAAAACGGAAACTGCGGAGATCCAATTCATCTTAA

Protein sequence

>MS.gene23905.t1

MDEILKNIFPAAIEAAKQHHQEHHQEEQQSNNNNNNIDDVWTDIVAEGGANHLHHQQHYHHPSSDEGFSACGAGGGDEVTLEDFLVKAGAVPYPHHQYPSSSSAVDDGSHSLQVALGKRKTVDETLDKAALQKQKRMIKNRESAARSRERKQAYTTELESLVKHLEIENKQLEEEQAERKKLRLKQLQEFLIPITEQPRPKRKLRRSNSS