Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23946.t1 | XP_024634855.1 | 73.3 | 790 | 31 | 2 | 1 | 610 | 1 | 790 | 0.00E+00 | 1081.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23946.t1 | Q9LIE5 | 30.1 | 279 | 187 | 3 | 152 | 428 | 384 | 656 | 7.0e-33 | 143.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23946.t1 | A0A151RX65 | 51.4 | 698 | 159 | 2 | 1 | 518 | 1 | 698 | 5.4e-188 | 667.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene23946.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23946.t1 | MTR_4g102720 | 51.974 | 152 | 40 | 1 | 1 | 152 | 1 | 119 | 2.92e-47 | 166 |
MS.gene23946.t1 | MTR_0402s0040 | 34.298 | 242 | 136 | 8 | 7 | 239 | 26 | 253 | 2.66e-34 | 137 |
MS.gene23946.t1 | MTR_7g074790 | 45.695 | 151 | 63 | 2 | 2 | 151 | 5 | 137 | 4.54e-34 | 129 |
MS.gene23946.t1 | MTR_7g061980 | 51.327 | 113 | 54 | 1 | 4 | 115 | 7 | 119 | 8.06e-33 | 122 |
MS.gene23946.t1 | MTR_5g039760 | 46.610 | 118 | 61 | 2 | 2 | 117 | 5 | 122 | 9.65e-28 | 110 |
MS.gene23946.t1 | MTR_5g015480 | 45.161 | 124 | 65 | 2 | 7 | 127 | 56 | 179 | 4.22e-21 | 93.6 |
MS.gene23946.t1 | MTR_2g070590 | 39.048 | 105 | 61 | 2 | 7 | 108 | 17 | 121 | 2.29e-17 | 79.0 |
MS.gene23946.t1 | MTR_2g099430 | 43.678 | 87 | 48 | 1 | 30 | 115 | 26 | 112 | 4.80e-16 | 75.1 |
MS.gene23946.t1 | MTR_6g017200 | 44.304 | 79 | 43 | 1 | 7 | 84 | 58 | 136 | 5.43e-16 | 75.9 |
MS.gene23946.t1 | MTR_1g057920 | 44.304 | 79 | 43 | 1 | 7 | 84 | 34 | 112 | 8.65e-15 | 71.6 |
MS.gene23946.t1 | MTR_7g113010 | 38.095 | 126 | 63 | 2 | 7 | 130 | 457 | 569 | 1.18e-13 | 74.3 |
MS.gene23946.t1 | MTR_0558s0020 | 30.636 | 173 | 92 | 7 | 3 | 152 | 35 | 202 | 5.98e-13 | 70.5 |
MS.gene23946.t1 | MTR_4g069880 | 46.875 | 64 | 34 | 0 | 2 | 65 | 5 | 68 | 6.15e-13 | 64.7 |
MS.gene23946.t1 | MTR_0337s0060 | 30.282 | 142 | 91 | 4 | 212 | 348 | 14 | 152 | 9.47e-13 | 68.9 |
MS.gene23946.t1 | MTR_1g083640 | 31.214 | 173 | 91 | 7 | 3 | 152 | 50 | 217 | 1.12e-12 | 69.3 |
MS.gene23946.t1 | MTR_4g067290 | 36.220 | 127 | 72 | 4 | 6 | 130 | 55 | 174 | 2.53e-12 | 67.4 |
MS.gene23946.t1 | MTR_4g067290 | 37.500 | 104 | 62 | 3 | 6 | 107 | 55 | 157 | 3.08e-12 | 67.0 |
MS.gene23946.t1 | MTR_4g067290 | 36.220 | 127 | 72 | 4 | 6 | 130 | 75 | 194 | 4.29e-12 | 67.0 |
MS.gene23946.t1 | MTR_6g022070 | 25.203 | 123 | 90 | 1 | 146 | 268 | 21 | 141 | 5.19e-12 | 67.8 |
MS.gene23946.t1 | MTR_2g014100 | 30.233 | 172 | 94 | 6 | 3 | 152 | 43 | 210 | 5.43e-12 | 66.6 |
MS.gene23946.t1 | MTR_4g067290 | 37.500 | 104 | 62 | 3 | 6 | 107 | 75 | 177 | 5.52e-12 | 66.6 |
MS.gene23946.t1 | MTR_4g067290 | 37.500 | 104 | 62 | 3 | 6 | 107 | 73 | 175 | 5.74e-12 | 66.6 |
MS.gene23946.t1 | MTR_4g067290 | 36.220 | 127 | 72 | 4 | 6 | 130 | 115 | 234 | 6.59e-12 | 67.0 |
MS.gene23946.t1 | MTR_4g040430 | 29.586 | 169 | 95 | 6 | 3 | 152 | 34 | 197 | 2.26e-11 | 63.9 |
MS.gene23946.t1 | MTR_6g051425 | 31.250 | 160 | 93 | 7 | 6 | 152 | 13 | 168 | 8.71e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23946.t1 | AT4G15090 | 26.790 | 377 | 236 | 5 | 149 | 515 | 372 | 718 | 4.39e-35 | 142 |
MS.gene23946.t1 | AT4G15090 | 27.152 | 151 | 107 | 3 | 4 | 152 | 48 | 197 | 1.35e-11 | 68.2 |
MS.gene23946.t1 | AT4G15090 | 26.790 | 377 | 236 | 5 | 149 | 515 | 372 | 718 | 4.39e-35 | 142 |
MS.gene23946.t1 | AT4G15090 | 27.152 | 151 | 107 | 3 | 4 | 152 | 48 | 197 | 1.35e-11 | 68.2 |
MS.gene23946.t1 | AT4G15090 | 26.790 | 377 | 236 | 5 | 149 | 515 | 372 | 718 | 4.39e-35 | 142 |
MS.gene23946.t1 | AT4G15090 | 27.152 | 151 | 107 | 3 | 4 | 152 | 48 | 197 | 1.35e-11 | 68.2 |
MS.gene23946.t1 | AT4G15090 | 26.790 | 377 | 236 | 5 | 149 | 515 | 372 | 718 | 4.39e-35 | 142 |
MS.gene23946.t1 | AT4G15090 | 27.152 | 151 | 107 | 3 | 4 | 152 | 48 | 197 | 1.35e-11 | 68.2 |
MS.gene23946.t1 | AT4G15090 | 26.790 | 377 | 236 | 5 | 149 | 515 | 372 | 718 | 4.39e-35 | 142 |
MS.gene23946.t1 | AT4G15090 | 27.152 | 151 | 107 | 3 | 4 | 152 | 48 | 197 | 1.35e-11 | 68.2 |
MS.gene23946.t1 | AT3G22170 | 29.897 | 291 | 182 | 5 | 152 | 432 | 384 | 662 | 9.71e-35 | 140 |
MS.gene23946.t1 | AT3G22170 | 29.897 | 291 | 182 | 5 | 152 | 432 | 384 | 662 | 9.71e-35 | 140 |
MS.gene23946.t1 | AT4G38170 | 27.632 | 304 | 200 | 7 | 147 | 441 | 159 | 451 | 1.92e-29 | 123 |
MS.gene23946.t1 | AT4G38180 | 32.900 | 231 | 146 | 3 | 161 | 385 | 408 | 635 | 3.64e-29 | 123 |
MS.gene23946.t1 | AT4G38180 | 37.662 | 154 | 91 | 3 | 4 | 152 | 70 | 223 | 8.29e-19 | 91.3 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 320 | 588 | 2.01e-27 | 118 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 320 | 588 | 2.01e-27 | 118 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 263 | 531 | 2.68e-27 | 117 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 320 | 588 | 2.99e-27 | 117 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 320 | 588 | 2.99e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 26.807 | 332 | 217 | 5 | 161 | 488 | 321 | 630 | 3.13e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 33.333 | 117 | 72 | 4 | 11 | 125 | 1 | 113 | 8.90e-11 | 65.5 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 320 | 588 | 3.15e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 26.807 | 332 | 217 | 5 | 161 | 488 | 321 | 630 | 3.62e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 33.333 | 117 | 72 | 4 | 11 | 125 | 1 | 113 | 9.07e-11 | 65.5 |
MS.gene23946.t1 | AT1G76320 | 26.807 | 332 | 217 | 5 | 161 | 488 | 321 | 630 | 3.62e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 33.333 | 117 | 72 | 4 | 11 | 125 | 1 | 113 | 9.07e-11 | 65.5 |
MS.gene23946.t1 | AT4G19990 | 29.964 | 277 | 178 | 4 | 149 | 417 | 334 | 602 | 3.77e-27 | 117 |
MS.gene23946.t1 | AT1G76320 | 26.807 | 332 | 217 | 5 | 161 | 488 | 321 | 630 | 5.01e-27 | 116 |
MS.gene23946.t1 | AT5G18960 | 27.607 | 326 | 219 | 7 | 123 | 439 | 467 | 784 | 3.12e-26 | 114 |
MS.gene23946.t1 | AT5G18960 | 27.607 | 326 | 219 | 7 | 123 | 439 | 467 | 784 | 3.12e-26 | 114 |
MS.gene23946.t1 | AT1G80010 | 26.846 | 298 | 202 | 8 | 155 | 439 | 423 | 717 | 3.57e-26 | 114 |
MS.gene23946.t1 | AT3G06250 | 28.716 | 296 | 194 | 7 | 153 | 439 | 473 | 760 | 1.72e-24 | 108 |
MS.gene23946.t1 | AT3G06250 | 28.716 | 296 | 194 | 7 | 153 | 439 | 473 | 760 | 1.72e-24 | 108 |
MS.gene23946.t1 | AT3G06250 | 28.716 | 296 | 194 | 7 | 153 | 439 | 473 | 760 | 1.72e-24 | 108 |
MS.gene23946.t1 | AT2G27110 | 26.937 | 271 | 190 | 4 | 161 | 428 | 355 | 620 | 1.87e-24 | 109 |
MS.gene23946.t1 | AT2G27110 | 26.937 | 271 | 190 | 4 | 161 | 428 | 355 | 620 | 1.87e-24 | 109 |
MS.gene23946.t1 | AT2G27110 | 26.937 | 271 | 190 | 4 | 161 | 428 | 210 | 475 | 1.94e-24 | 108 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 287 | 571 | 4.18e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 4.50e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 4.50e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 287 | 571 | 4.55e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 4.88e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 4.88e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 4.88e-24 | 107 |
MS.gene23946.t1 | AT2G32250 | 23.793 | 290 | 214 | 2 | 161 | 448 | 328 | 612 | 7.31e-24 | 107 |
MS.gene23946.t1 | AT1G52520 | 25.172 | 290 | 200 | 5 | 165 | 439 | 408 | 695 | 2.14e-21 | 99.4 |
MS.gene23946.t1 | AT1G10240 | 27.111 | 225 | 146 | 5 | 169 | 385 | 394 | 608 | 2.52e-16 | 83.2 |
MS.gene23946.t1 | AT1G10240 | 27.111 | 225 | 146 | 5 | 169 | 385 | 394 | 608 | 2.52e-16 | 83.2 |
MS.gene23946.t1 | AT5G28530 | 24.255 | 235 | 167 | 5 | 168 | 399 | 347 | 573 | 1.29e-13 | 74.3 |
MS.gene23946.t1 | AT5G28530 | 28.659 | 164 | 108 | 5 | 5 | 162 | 53 | 213 | 5.37e-11 | 66.2 |
MS.gene23946.t1 | AT5G28530 | 24.255 | 235 | 167 | 5 | 168 | 399 | 410 | 636 | 1.48e-13 | 74.3 |
MS.gene23946.t1 | AT5G28530 | 28.659 | 164 | 108 | 5 | 5 | 162 | 53 | 213 | 5.20e-11 | 66.2 |
MS.gene23946.t1 | AT5G28530 | 24.681 | 235 | 162 | 6 | 168 | 399 | 347 | 569 | 4.97e-13 | 72.4 |
MS.gene23946.t1 | AT5G28530 | 28.659 | 164 | 108 | 5 | 5 | 162 | 53 | 213 | 5.58e-11 | 65.9 |
MS.gene23946.t1 | AT5G28530 | 24.681 | 235 | 162 | 6 | 168 | 399 | 410 | 632 | 6.55e-13 | 72.4 |
MS.gene23946.t1 | AT5G28530 | 28.659 | 164 | 108 | 5 | 5 | 162 | 53 | 213 | 5.55e-11 | 66.2 |
MS.gene23946.t1 | AT5G28530 | 24.681 | 235 | 162 | 6 | 168 | 399 | 410 | 632 | 6.55e-13 | 72.4 |
MS.gene23946.t1 | AT5G28530 | 28.659 | 164 | 108 | 5 | 5 | 162 | 53 | 213 | 5.55e-11 | 66.2 |
MS.gene23946.t1 | AT3G59470 | 40.777 | 103 | 58 | 3 | 6 | 106 | 69 | 170 | 2.32e-11 | 65.1 |
MS.gene23946.t1 | AT3G59470 | 40.777 | 103 | 58 | 3 | 6 | 106 | 69 | 170 | 2.32e-11 | 65.1 |
MS.gene23946.t1 | AT3G59470 | 40.777 | 103 | 58 | 3 | 6 | 106 | 81 | 182 | 3.20e-11 | 64.7 |
Find 102 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 2.1:+1890789 | None:intergenic |
TCTGAACACCATACTTTATA+AGG | 0.212221 | 2.1:+1891351 | None:intergenic |
TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 2.1:-1892391 | MS.gene23946:CDS |
AAATTTGTCCCCGCTTTATT+AGG | 0.254015 | 2.1:-1890677 | MS.gene23946:CDS |
CCGAAAACCATATCTACTTT+TGG | 0.265147 | 2.1:+1892419 | None:intergenic |
TTAAGAAACTCAACAGCTTC+TGG | 0.265886 | 2.1:+1890630 | None:intergenic |
TATCTCTTTAATATTGTTAG+AGG | 0.283905 | 2.1:+1890530 | None:intergenic |
TATTGCCAAGAAAAGGAATA+TGG | 0.289005 | 2.1:-1890946 | MS.gene23946:CDS |
TACGGTGGTAAGGTTGGATT+TGG | 0.293440 | 2.1:-1892362 | MS.gene23946:CDS |
ATCTCCAGCACAATGTTATA+AGG | 0.298579 | 2.1:-1890700 | MS.gene23946:CDS |
CCTTGCTTCACAATTTGTTC+TGG | 0.300300 | 2.1:+1892211 | None:intergenic |
CATATAGGTGCACTTGTAAT+TGG | 0.302297 | 2.1:+1890139 | None:intergenic |
CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 2.1:-1890832 | MS.gene23946:CDS |
CTTTGCGCGTTTCTTTCTCT+TGG | 0.329292 | 2.1:+1890407 | None:intergenic |
ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 2.1:-1891272 | MS.gene23946:CDS |
CAATTACAAGTGCACCTATA+TGG | 0.342061 | 2.1:-1890138 | MS.gene23946:CDS |
ATGGTTCAGTTTCTTCTTGT+AGG | 0.346032 | 2.1:-1892307 | MS.gene23946:CDS |
TGTACAGTATAAAGGAGAAA+TGG | 0.347671 | 2.1:-1891307 | MS.gene23946:CDS |
TGTCGTAAATTTGAGAGCTT+TGG | 0.348811 | 2.1:-1890873 | MS.gene23946:CDS |
ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 2.1:-1891359 | MS.gene23946:CDS |
TGTTATTAGCTAACCATAGA+TGG | 0.362982 | 2.1:+1890094 | None:intergenic |
TAAGGAAGTTGCTGATGAAT+TGG | 0.363801 | 2.1:-1890610 | MS.gene23946:CDS |
TGCATACAATCAACCATCTA+TGG | 0.365263 | 2.1:-1890107 | MS.gene23946:intron |
GATGGAACATCTAGTCAATT+TGG | 0.365822 | 2.1:-1890003 | MS.gene23946:CDS |
TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 2.1:-1891271 | MS.gene23946:CDS |
ACGGTGGTAAGGTTGGATTT+GGG | 0.383690 | 2.1:-1892361 | MS.gene23946:CDS |
ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 2.1:-1890919 | MS.gene23946:CDS |
TTTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 2.1:+1892224 | None:intergenic |
TTGGAAGCCAAAAGTAGATA+TGG | 0.391013 | 2.1:-1892426 | MS.gene23946:CDS |
GCAAAGAATGTACAGTATAA+AGG | 0.392434 | 2.1:-1891315 | MS.gene23946:CDS |
TCGGTAGCTTTGAAGATGCT+TGG | 0.398691 | 2.1:-1892400 | MS.gene23946:CDS |
CGGTAGCTTTGAAGATGCTT+GGG | 0.400248 | 2.1:-1892399 | MS.gene23946:CDS |
GATACAAGATGAATGAAGAT+TGG | 0.401677 | 2.1:-1892445 | None:intergenic |
AGAAGCTGTTGAGTTTCTTA+AGG | 0.410867 | 2.1:-1890628 | MS.gene23946:CDS |
TATGCATTATTAAGCCATAT+AGG | 0.412953 | 2.1:+1890124 | None:intergenic |
GACTTTAAGAAATGCATGTA+TGG | 0.419899 | 2.1:-1891416 | MS.gene23946:CDS |
GTACAGTATAAAGGAGAAAT+GGG | 0.433816 | 2.1:-1891306 | MS.gene23946:CDS |
GTAAGGTTGGATTTGGGGTG+AGG | 0.435582 | 2.1:-1892355 | MS.gene23946:CDS |
GATGGTGCAACACAAGTAAA+GGG | 0.435850 | 2.1:-1890495 | MS.gene23946:CDS |
AGGTTGGGTAGAAACAAAAT+TGG | 0.447417 | 2.1:-1890430 | MS.gene23946:CDS |
AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 2.1:-1891382 | MS.gene23946:CDS |
GTTCAAAACGTTGGAAAGGT+TGG | 0.454209 | 2.1:-1890446 | MS.gene23946:CDS |
CTTATGTTATTGCCAAGAAA+AGG | 0.457771 | 2.1:-1890953 | MS.gene23946:CDS |
AGTAGAGCTTCACAAACTAT+TGG | 0.464878 | 2.1:-1890753 | MS.gene23946:CDS |
CTCTTTAAAATATAAGGCTC+TGG | 0.465021 | 2.1:+1890795 | None:intergenic |
AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 2.1:-1892287 | MS.gene23946:CDS |
TGATGGTGCAACACAAGTAA+AGG | 0.471729 | 2.1:-1890496 | MS.gene23946:CDS |
ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 2.1:-1892206 | MS.gene23946:CDS |
GAATACGAGTTCTTCAGTCT+TGG | 0.477905 | 2.1:+1891089 | None:intergenic |
CGGTGGTAAGGTTGGATTTG+GGG | 0.479970 | 2.1:-1892360 | MS.gene23946:CDS |
ATTTCCTTATAACATTGTGC+TGG | 0.482058 | 2.1:+1890696 | None:intergenic |
GAGATATCATGTACTAATGA+TGG | 0.484332 | 2.1:-1890513 | MS.gene23946:CDS |
TTCACAAATTCAAGAACCTA+TGG | 0.484743 | 2.1:-1890376 | MS.gene23946:intron |
ACATTGTAAATCACTAATGT+TGG | 0.488437 | 2.1:+1890180 | None:intergenic |
TTCAAAACGTTGGAAAGGTT+GGG | 0.489068 | 2.1:-1890445 | MS.gene23946:CDS |
ACACTTAGGAAATTTAATGA+AGG | 0.489904 | 2.1:-1891459 | MS.gene23946:intron |
TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 2.1:-1892380 | MS.gene23946:CDS |
TAGTCATGTTGCAGAAGACT+TGG | 0.491651 | 2.1:-1890727 | MS.gene23946:CDS |
CTTGTAATTGGCGATGCATA+TGG | 0.492051 | 2.1:+1890151 | None:intergenic |
GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 2.1:-1892177 | MS.gene23946:CDS |
CTGGAAAACTTACGGTGGTA+AGG | 0.495710 | 2.1:-1892372 | MS.gene23946:CDS |
CAGGCCTCCATTCAAGTCTC+TGG | 0.496457 | 2.1:+1889835 | None:intergenic |
GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 2.1:-1891386 | MS.gene23946:CDS |
GTAGAAGAACAAAGCTAAGC+AGG | 0.510637 | 2.1:-1890278 | MS.gene23946:intron |
CACTTAGGAAATTTAATGAA+GGG | 0.513608 | 2.1:-1891458 | MS.gene23946:intron |
TTCTTGAATTTGTGAAGCAG+TGG | 0.516062 | 2.1:+1890383 | None:intergenic |
ATTGCCAAGAAAAGGAATAT+GGG | 0.518068 | 2.1:-1890945 | MS.gene23946:CDS |
AGAAAAGGAATATGGGAGAA+TGG | 0.522592 | 2.1:-1890938 | MS.gene23946:CDS |
ATAAGTAGTGAACAAGTGAA+TGG | 0.530525 | 2.1:-1890555 | MS.gene23946:CDS |
TATGTTGTCTTCTCAACGAA+AGG | 0.532534 | 2.1:-1892099 | MS.gene23946:CDS |
AAAACTTACGGTGGTAAGGT+TGG | 0.535426 | 2.1:-1892368 | MS.gene23946:CDS |
CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 2.1:+1892034 | None:intergenic |
TGTGACGATCCTAATAAAGC+GGG | 0.542482 | 2.1:+1890668 | None:intergenic |
TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 2.1:-1892188 | MS.gene23946:CDS |
GATTTACTGAGTAAAGAAGC+AGG | 0.550187 | 2.1:-1892008 | MS.gene23946:CDS |
AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 2.1:-1891154 | MS.gene23946:CDS |
AAGGGGTTTAAGAACAAAGA+AGG | 0.557368 | 2.1:-1890477 | MS.gene23946:CDS |
GATGGTACCAGAGACTTGAA+TGG | 0.557463 | 2.1:-1889842 | MS.gene23946:CDS |
AAGAACAAAGAAGGTCCAAA+GGG | 0.561141 | 2.1:-1890468 | MS.gene23946:CDS |
TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 2.1:-1889860 | MS.gene23946:intron |
GAACACCATACTTTATAAGG+AGG | 0.576736 | 2.1:+1891354 | None:intergenic |
TAAGAACAAAGAAGGTCCAA+AGG | 0.577271 | 2.1:-1890469 | MS.gene23946:CDS |
AAGGGTTCAAAACGTTGGAA+AGG | 0.583511 | 2.1:-1890450 | MS.gene23946:CDS |
GTCCAAAGGGTTCAAAACGT+TGG | 0.588871 | 2.1:-1890455 | MS.gene23946:CDS |
CTTAGGAAATTTAATGAAGG+GGG | 0.589615 | 2.1:-1891456 | MS.gene23946:intron |
ACTTAGGAAATTTAATGAAG+GGG | 0.591209 | 2.1:-1891457 | MS.gene23946:intron |
TTTCTGGCAAATGTAACTCG+TGG | 0.594340 | 2.1:+1892129 | None:intergenic |
TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 2.1:-1890663 | MS.gene23946:CDS |
GCAAATGTAACTCGTGGTTG+TGG | 0.597490 | 2.1:+1892135 | None:intergenic |
AACACCATACTTTATAAGGA+GGG | 0.603443 | 2.1:+1891355 | None:intergenic |
CCAGAACAAATTGTGAAGCA+AGG | 0.610911 | 2.1:-1892211 | MS.gene23946:CDS |
CTGTGACGATCCTAATAAAG+CGG | 0.623114 | 2.1:+1890667 | None:intergenic |
ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 2.1:-1892053 | MS.gene23946:CDS |
ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 2.1:-1892040 | MS.gene23946:CDS |
CAAACAACTCATACTCACGT+TGG | 0.665525 | 2.1:+1891021 | None:intergenic |
AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 2.1:-1890997 | MS.gene23946:CDS |
ATGGTGCAACACAAGTAAAG+GGG | 0.679306 | 2.1:-1890494 | MS.gene23946:CDS |
AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 2.1:-1892192 | MS.gene23946:CDS |
GGTACCAGAGACTTGAATGG+AGG | 0.689295 | 2.1:-1889839 | MS.gene23946:CDS |
GTGACGATCCTAATAAAGCG+GGG | 0.705450 | 2.1:+1890669 | None:intergenic |
GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 2.1:-1892377 | MS.gene23946:CDS |
TTACTGAGTAAAGAAGCAGG+AGG | 0.766829 | 2.1:-1892005 | MS.gene23946:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATATTAATAATACCAT+AGG | + | chr2.1:1891912-1891931 | None:intergenic | 10.0% |
!!! | TATTAAAAATTTTATGAGTA+AGG | - | chr2.1:1891059-1891078 | MS.gene23946:CDS | 10.0% |
!!! | AATTATTTTGGTTTTTATGT+AGG | - | chr2.1:1892238-1892257 | MS.gene23946:CDS | 15.0% |
!!! | ACTTGCATTTTTTAAATTAT+AGG | - | chr2.1:1892393-1892412 | MS.gene23946:CDS | 15.0% |
!!! | ATTATTTTGGTTTTTATGTA+GGG | - | chr2.1:1892239-1892258 | MS.gene23946:CDS | 15.0% |
!!! | GTTTAGTGTTTAAATTATTT+TGG | - | chr2.1:1892226-1892245 | MS.gene23946:CDS | 15.0% |
!! | AAAAAAAAGAGAAAGAAGTT+TGG | - | chr2.1:1890336-1890355 | MS.gene23946:intron | 20.0% |
!! | ACATGAAAAAAAGGAATATA+AGG | + | chr2.1:1891973-1891992 | None:intergenic | 20.0% |
!! | CATGAAAAAAAGGAATATAA+GGG | + | chr2.1:1891972-1891991 | None:intergenic | 20.0% |
!! | TATCTCTTTAATATTGTTAG+AGG | + | chr2.1:1891742-1891761 | None:intergenic | 20.0% |
!! | TTAAACACTAAACATAGTTA+AGG | + | chr2.1:1892219-1892238 | None:intergenic | 20.0% |
!!! | TTGATTGATTACAGTTATTT+TGG | - | chr2.1:1890490-1890509 | MS.gene23946:CDS | 20.0% |
! | ACACTTAGGAAATTTAATGA+AGG | - | chr2.1:1890810-1890829 | MS.gene23946:CDS | 25.0% |
! | ACATTGTAAATCACTAATGT+TGG | + | chr2.1:1892092-1892111 | None:intergenic | 25.0% |
! | ACTTAGGAAATTTAATGAAG+GGG | - | chr2.1:1890812-1890831 | MS.gene23946:CDS | 25.0% |
! | AGATTATACACACAGAAAAA+AGG | - | chr2.1:1889939-1889958 | MS.gene23946:intron | 25.0% |
! | CAAAATGGAATTAAACACTT+AGG | - | chr2.1:1890796-1890815 | MS.gene23946:CDS | 25.0% |
! | CACTTAGGAAATTTAATGAA+GGG | - | chr2.1:1890811-1890830 | MS.gene23946:CDS | 25.0% |
! | CTTAAAAGTCTTCATTCATA+TGG | - | chr2.1:1891437-1891456 | MS.gene23946:CDS | 25.0% |
! | TATGCATTATTAAGCCATAT+AGG | + | chr2.1:1892148-1892167 | None:intergenic | 25.0% |
! | TGGAATAAGTCAAAAATAGT+AGG | + | chr2.1:1891231-1891250 | None:intergenic | 25.0% |
! | TGTTCTTCTACATGAAAAAA+AGG | + | chr2.1:1891982-1892001 | None:intergenic | 25.0% |
!! | AAATTTTATGAGTAAGGACT+TGG | - | chr2.1:1891065-1891084 | MS.gene23946:CDS | 25.0% |
!!! | TAGTTTTACTAGCTTATTGA+TGG | - | chr2.1:1892295-1892314 | MS.gene23946:CDS | 25.0% |
AACACCATACTTTATAAGGA+GGG | + | chr2.1:1890917-1890936 | None:intergenic | 30.0% | |
AAGAACAATTTGAAGATGGT+TGG | - | chr2.1:1890887-1890906 | MS.gene23946:CDS | 30.0% | |
AAGATGTTGTAGAAGAAAAG+CGG | - | chr2.1:1891115-1891134 | MS.gene23946:CDS | 30.0% | |
AGGTTTCCAAAAATGTAATG+AGG | - | chr2.1:1892011-1892030 | MS.gene23946:CDS | 30.0% | |
ATAAGTAGTGAACAAGTGAA+TGG | - | chr2.1:1891714-1891733 | MS.gene23946:intron | 30.0% | |
ATGAAGAAGACTTTGACATT+AGG | - | chr2.1:1890997-1891016 | MS.gene23946:CDS | 30.0% | |
ATGGTGTTCAGAAAAATGAT+TGG | - | chr2.1:1890929-1890948 | MS.gene23946:CDS | 30.0% | |
ATTGCCAAGAAAAGGAATAT+GGG | - | chr2.1:1891324-1891343 | MS.gene23946:CDS | 30.0% | |
ATTTCCTTATAACATTGTGC+TGG | + | chr2.1:1891576-1891595 | None:intergenic | 30.0% | |
CTTAGGAAATTTAATGAAGG+GGG | - | chr2.1:1890813-1890832 | MS.gene23946:CDS | 30.0% | |
CTTATGTTATTGCCAAGAAA+AGG | - | chr2.1:1891316-1891335 | MS.gene23946:CDS | 30.0% | |
GAGATATCATGTACTAATGA+TGG | - | chr2.1:1891756-1891775 | MS.gene23946:intron | 30.0% | |
GATGAAGAACAATTTGAAGA+TGG | - | chr2.1:1890883-1890902 | MS.gene23946:CDS | 30.0% | |
GCAAAGAATGTACAGTATAA+AGG | - | chr2.1:1890954-1890973 | MS.gene23946:CDS | 30.0% | |
GTACAGTATAAAGGAGAAAT+GGG | - | chr2.1:1890963-1890982 | MS.gene23946:CDS | 30.0% | |
TACTGATCAAGACAAATCAA+TGG | - | chr2.1:1890711-1890730 | MS.gene23946:CDS | 30.0% | |
TATACACACAGAAAAAAGGA+TGG | - | chr2.1:1889943-1889962 | MS.gene23946:intron | 30.0% | |
TATTGCCAAGAAAAGGAATA+TGG | - | chr2.1:1891323-1891342 | MS.gene23946:CDS | 30.0% | |
TCTGAACACCATACTTTATA+AGG | + | chr2.1:1890921-1890940 | None:intergenic | 30.0% | |
TGAAGAAGACTTTGACATTA+GGG | - | chr2.1:1890998-1891017 | MS.gene23946:CDS | 30.0% | |
TGATCAGTAAAAACTGTTTG+AGG | + | chr2.1:1890700-1890719 | None:intergenic | 30.0% | |
TGTACAGTATAAAGGAGAAA+TGG | - | chr2.1:1890962-1890981 | MS.gene23946:CDS | 30.0% | |
TGTTATTAGCTAACCATAGA+TGG | + | chr2.1:1892178-1892197 | None:intergenic | 30.0% | |
TTCACAAATTCAAGAACCTA+TGG | - | chr2.1:1891893-1891912 | MS.gene23946:intron | 30.0% | |
TTTCCAAAAATGTAATGAGG+CGG | - | chr2.1:1892014-1892033 | MS.gene23946:CDS | 30.0% | |
! | CCAAAAGTAGATATGGTTTT+CGG | - | chr2.1:1889850-1889869 | MS.gene23946:CDS | 30.0% |
! | GACTTTAAGAAATGCATGTA+TGG | - | chr2.1:1890853-1890872 | MS.gene23946:CDS | 30.0% |
! | TGTATTCTTTTCCAAATCGA+AGG | + | chr2.1:1891364-1891383 | None:intergenic | 30.0% |
!! | AGCCTTATATTTTAAAGAGG+TGG | - | chr2.1:1891478-1891497 | MS.gene23946:intron | 30.0% |
!! | CAGAGCCTTATATTTTAAAG+AGG | - | chr2.1:1891475-1891494 | MS.gene23946:intron | 30.0% |
!! | CTCTTTAAAATATAAGGCTC+TGG | + | chr2.1:1891477-1891496 | None:intergenic | 30.0% |
!! | GTCCACCTCTTTAAAATATA+AGG | + | chr2.1:1891483-1891502 | None:intergenic | 30.0% |
!!! | GACAACATATGAGTTTTTTC+TGG | + | chr2.1:1890159-1890178 | None:intergenic | 30.0% |
!!! | TCTTCAGTCTTGGAATTTTT+TGG | + | chr2.1:1891173-1891192 | None:intergenic | 30.0% |
AAGAACAAAGAAGGTCCAAA+GGG | - | chr2.1:1891801-1891820 | MS.gene23946:intron | 35.0% | |
AAGGGGTTTAAGAACAAAGA+AGG | - | chr2.1:1891792-1891811 | MS.gene23946:intron | 35.0% | |
AAGGTTAGGACTTAAGAATG+TGG | - | chr2.1:1890077-1890096 | MS.gene23946:intron | 35.0% | |
ACAAATTGTGAAGCAAGGTT+AGG | - | chr2.1:1890063-1890082 | MS.gene23946:intron | 35.0% | |
ACATCCCTCCTTATAAAGTA+TGG | - | chr2.1:1890910-1890929 | MS.gene23946:CDS | 35.0% | |
AGAAAAGGAATATGGGAGAA+TGG | - | chr2.1:1891331-1891350 | MS.gene23946:CDS | 35.0% | |
AGAAAGAAGTTTGGTACAAG+GGG | - | chr2.1:1890345-1890364 | MS.gene23946:intron | 35.0% | |
AGAAGCTGTTGAGTTTCTTA+AGG | - | chr2.1:1891641-1891660 | MS.gene23946:intron | 35.0% | |
AGAGAAAGAAGTTTGGTACA+AGG | - | chr2.1:1890343-1890362 | MS.gene23946:intron | 35.0% | |
AGGTTGGGTAGAAACAAAAT+TGG | - | chr2.1:1891839-1891858 | MS.gene23946:intron | 35.0% | |
AGTAGAGCTTCACAAACTAT+TGG | - | chr2.1:1891516-1891535 | MS.gene23946:intron | 35.0% | |
ATCTCCAGCACAATGTTATA+AGG | - | chr2.1:1891569-1891588 | MS.gene23946:intron | 35.0% | |
ATGGTTCAGTTTCTTCTTGT+AGG | - | chr2.1:1889962-1889981 | MS.gene23946:intron | 35.0% | |
CAATATCTAGCTGATAAGCA+TGG | + | chr2.1:1890429-1890448 | None:intergenic | 35.0% | |
CAATTACAAGTGCACCTATA+TGG | - | chr2.1:1892131-1892150 | MS.gene23946:CDS | 35.0% | |
CATATAGGTGCACTTGTAAT+TGG | + | chr2.1:1892133-1892152 | None:intergenic | 35.0% | |
GAACACCATACTTTATAAGG+AGG | + | chr2.1:1890918-1890937 | None:intergenic | 35.0% | |
GAATGTGGATGGAAAATTGA+TGG | - | chr2.1:1890092-1890111 | MS.gene23946:intron | 35.0% | |
GAGAAAGAAGTTTGGTACAA+GGG | - | chr2.1:1890344-1890363 | MS.gene23946:intron | 35.0% | |
GATGGAACATCTAGTCAATT+TGG | - | chr2.1:1892266-1892285 | MS.gene23946:CDS | 35.0% | |
GATTTACTGAGTAAAGAAGC+AGG | - | chr2.1:1890261-1890280 | MS.gene23946:CDS | 35.0% | |
TAAGAACAAAGAAGGTCCAA+AGG | - | chr2.1:1891800-1891819 | MS.gene23946:intron | 35.0% | |
TAAGGAAGTTGCTGATGAAT+TGG | - | chr2.1:1891659-1891678 | MS.gene23946:intron | 35.0% | |
TATGTTGTCTTCTCAACGAA+AGG | - | chr2.1:1890170-1890189 | MS.gene23946:CDS | 35.0% | |
TGATAAGCATGGTAGAAAGT+TGG | + | chr2.1:1890418-1890437 | None:intergenic | 35.0% | |
TGCATACAATCAACCATCTA+TGG | - | chr2.1:1892162-1892181 | MS.gene23946:CDS | 35.0% | |
TGTCGTAAATTTGAGAGCTT+TGG | - | chr2.1:1891396-1891415 | MS.gene23946:CDS | 35.0% | |
TTAAGAAACTCAACAGCTTC+TGG | + | chr2.1:1891642-1891661 | None:intergenic | 35.0% | |
TTAGGACTTAAGAATGTGGA+TGG | - | chr2.1:1890081-1890100 | MS.gene23946:intron | 35.0% | |
TTATAGGAGCAACTTGATGA+TGG | - | chr2.1:1892409-1892428 | MS.gene23946:CDS | 35.0% | |
TTCAAAACGTTGGAAAGGTT+GGG | - | chr2.1:1891824-1891843 | MS.gene23946:intron | 35.0% | |
TTCCAAAAATGTAATGAGGC+GGG | - | chr2.1:1892015-1892034 | MS.gene23946:CDS | 35.0% | |
TTCTTGAATTTGTGAAGCAG+TGG | + | chr2.1:1891889-1891908 | None:intergenic | 35.0% | |
TTGGAAGCCAAAAGTAGATA+TGG | - | chr2.1:1889843-1889862 | MS.gene23946:CDS | 35.0% | |
TTTATTAGGATCGTCACAGA+AGG | - | chr2.1:1891606-1891625 | MS.gene23946:intron | 35.0% | |
! | AAATTTGTCCCCGCTTTATT+AGG | - | chr2.1:1891592-1891611 | MS.gene23946:intron | 35.0% |
! | ATCAGATCACCAATGTGTTT+TGG | - | chr2.1:1890452-1890471 | MS.gene23946:CDS | 35.0% |
! | CCGAAAACCATATCTACTTT+TGG | + | chr2.1:1889853-1889872 | None:intergenic | 35.0% |
! | TCAGATCACCAATGTGTTTT+GGG | - | chr2.1:1890453-1890472 | MS.gene23946:CDS | 35.0% |
! | TTCTCCCATATTCCTTTTCT+TGG | + | chr2.1:1891331-1891350 | None:intergenic | 35.0% |
!!! | ATTGATGGTGCATGATTTTG+TGG | - | chr2.1:1890107-1890126 | MS.gene23946:intron | 35.0% |
AAAACTTACGGTGGTAAGGT+TGG | - | chr2.1:1889901-1889920 | MS.gene23946:intron | 40.0% | |
AAGGGTTCAAAACGTTGGAA+AGG | - | chr2.1:1891819-1891838 | MS.gene23946:intron | 40.0% | |
ACATAAACCATGGTAAGCTC+CGG | + | chr2.1:1890761-1890780 | None:intergenic | 40.0% | |
AGCATGCTTTGTGAAAAGCA+TGG | - | chr2.1:1891272-1891291 | MS.gene23946:CDS | 40.0% | |
ATGGTGCAACACAAGTAAAG+GGG | - | chr2.1:1891775-1891794 | MS.gene23946:intron | 40.0% | |
CAAAAATTACAGCTCCTCGA+TGG | + | chr2.1:1890594-1890613 | None:intergenic | 40.0% | |
CAAACAACTCATACTCACGT+TGG | + | chr2.1:1891251-1891270 | None:intergenic | 40.0% | |
CCAGAACAAATTGTGAAGCA+AGG | - | chr2.1:1890058-1890077 | MS.gene23946:intron | 40.0% | |
CTGTGACGATCCTAATAAAG+CGG | + | chr2.1:1891605-1891624 | None:intergenic | 40.0% | |
CTTACCATGGTTTATGTACG+TGG | - | chr2.1:1890764-1890783 | MS.gene23946:CDS | 40.0% | |
CTTGTAATTGGCGATGCATA+TGG | + | chr2.1:1892121-1892140 | None:intergenic | 40.0% | |
GAATACGAGTTCTTCAGTCT+TGG | + | chr2.1:1891183-1891202 | None:intergenic | 40.0% | |
GATGGTGCAACACAAGTAAA+GGG | - | chr2.1:1891774-1891793 | MS.gene23946:intron | 40.0% | |
GTAGAAGAACAAAGCTAAGC+AGG | - | chr2.1:1891991-1892010 | MS.gene23946:intron | 40.0% | |
GTTCAAAACGTTGGAAAGGT+TGG | - | chr2.1:1891823-1891842 | MS.gene23946:intron | 40.0% | |
TAGTCATGTTGCAGAAGACT+TGG | - | chr2.1:1891542-1891561 | MS.gene23946:intron | 40.0% | |
TGTGACGATCCTAATAAAGC+GGG | + | chr2.1:1891604-1891623 | None:intergenic | 40.0% | |
TTACTGAGTAAAGAAGCAGG+AGG | - | chr2.1:1890264-1890283 | MS.gene23946:CDS | 40.0% | |
TTTGTTCTGGTCTCTAGTCT+TGG | + | chr2.1:1890048-1890067 | None:intergenic | 40.0% | |
! | AGGTTTGTTTGCTGCAAAGA+AGG | - | chr2.1:1889982-1890001 | MS.gene23946:CDS | 40.0% |
! | ATCCCGCCTCATTACATTTT+TGG | + | chr2.1:1892020-1892039 | None:intergenic | 40.0% |
! | ATTGAACTAGCTGATAGTGC+CGG | - | chr2.1:1890216-1890235 | MS.gene23946:CDS | 40.0% |
! | CATCGAGGAGCTGTAATTTT+TGG | - | chr2.1:1890592-1890611 | MS.gene23946:CDS | 40.0% |
! | CCTTGCTTCACAATTTGTTC+TGG | + | chr2.1:1890061-1890080 | None:intergenic | 40.0% |
! | CGATTTCCTTTGTTGTACAC+CGG | + | chr2.1:1890238-1890257 | None:intergenic | 40.0% |
! | GTTTTATGATCTCGCTTGTC+TGG | + | chr2.1:1890018-1890037 | None:intergenic | 40.0% |
! | GTTTTTATGTAGGGAGACGA+TGG | - | chr2.1:1892248-1892267 | MS.gene23946:CDS | 40.0% |
! | TGATGGTGCAACACAAGTAA+AGG | - | chr2.1:1891773-1891792 | MS.gene23946:intron | 40.0% |
! | TTTCTGGCAAATGTAACTCG+TGG | + | chr2.1:1890143-1890162 | None:intergenic | 40.0% |
!! | TGGGAGTTCTGGAAAACTTA+CGG | - | chr2.1:1889889-1889908 | MS.gene23946:intron | 40.0% |
!! | TTCCAACGTTTTGAACCCTT+TGG | + | chr2.1:1891819-1891838 | None:intergenic | 40.0% |
AAACTGCTGAGTCATACGAG+TGG | - | chr2.1:1890635-1890654 | MS.gene23946:CDS | 45.0% | |
AAATTACAGCTCCTCGATGG+TGG | + | chr2.1:1890591-1890610 | None:intergenic | 45.0% | |
AAGAAGTTTGGTACAAGGGG+AGG | - | chr2.1:1890348-1890367 | MS.gene23946:intron | 45.0% | |
AATCCCGAGATGATTGCTAG+TGG | + | chr2.1:1890565-1890584 | None:intergenic | 45.0% | |
ACGGTGGTAAGGTTGGATTT+GGG | - | chr2.1:1889908-1889927 | MS.gene23946:intron | 45.0% | |
ACGTGGCACTTGATGCAAAA+TGG | - | chr2.1:1890781-1890800 | MS.gene23946:CDS | 45.0% | |
AGACCACTAGCAATCATCTC+GGG | - | chr2.1:1890559-1890578 | MS.gene23946:CDS | 45.0% | |
AGCAGGAGGTAGAACTAACT+TGG | - | chr2.1:1890278-1890297 | MS.gene23946:intron | 45.0% | |
AGCATCTGCCCAAAACACAT+TGG | + | chr2.1:1890464-1890483 | None:intergenic | 45.0% | |
AGTGCCACGTACATAAACCA+TGG | + | chr2.1:1890771-1890790 | None:intergenic | 45.0% | |
ATGGCAAGTGACCTTCGATT+TGG | - | chr2.1:1891350-1891369 | MS.gene23946:CDS | 45.0% | |
CAGACCACTAGCAATCATCT+CGG | - | chr2.1:1890558-1890577 | MS.gene23946:CDS | 45.0% | |
CATAAACCATGGTAAGCTCC+GGG | + | chr2.1:1890760-1890779 | None:intergenic | 45.0% | |
CTGGAAAACTTACGGTGGTA+AGG | - | chr2.1:1889897-1889916 | MS.gene23946:intron | 45.0% | |
CTTTGCGCGTTTCTTTCTCT+TGG | + | chr2.1:1891865-1891884 | None:intergenic | 45.0% | |
GATGGTACCAGAGACTTGAA+TGG | - | chr2.1:1892427-1892446 | MS.gene23946:CDS | 45.0% | |
GCAAATGTAACTCGTGGTTG+TGG | + | chr2.1:1890137-1890156 | None:intergenic | 45.0% | |
GCAGGAGGTAGAACTAACTT+GGG | - | chr2.1:1890279-1890298 | MS.gene23946:intron | 45.0% | |
GTCCAAAGGGTTCAAAACGT+TGG | - | chr2.1:1891814-1891833 | MS.gene23946:intron | 45.0% | |
GTGACGATCCTAATAAAGCG+GGG | + | chr2.1:1891603-1891622 | None:intergenic | 45.0% | |
TACGGTGGTAAGGTTGGATT+TGG | - | chr2.1:1889907-1889926 | MS.gene23946:intron | 45.0% | |
TTGAAGATGCTTGGGAGTTC+TGG | - | chr2.1:1889878-1889897 | MS.gene23946:intron | 45.0% | |
! | GATGGTGCATGATTTTGTGG+AGG | - | chr2.1:1890110-1890129 | MS.gene23946:CDS | 45.0% |
!! | AATGGCAAAAGCATTAGCCG+AGG | - | chr2.1:1890729-1890748 | MS.gene23946:CDS | 45.0% |
!! | ATAGTGCCGGTGTACAACAA+AGG | - | chr2.1:1890229-1890248 | MS.gene23946:CDS | 45.0% |
!! | ATGTGTTTTGGGCAGATGCT+AGG | - | chr2.1:1890464-1890483 | MS.gene23946:CDS | 45.0% |
!! | CGGTAGCTTTGAAGATGCTT+GGG | - | chr2.1:1889870-1889889 | MS.gene23946:intron | 45.0% |
!! | GAGTTCTGGAAAACTTACGG+TGG | - | chr2.1:1889892-1889911 | MS.gene23946:intron | 45.0% |
!! | TCGGTAGCTTTGAAGATGCT+TGG | - | chr2.1:1889869-1889888 | MS.gene23946:intron | 45.0% |
CGGTGGTAAGGTTGGATTTG+GGG | - | chr2.1:1889909-1889928 | MS.gene23946:intron | 50.0% | |
GGTACCAGAGACTTGAATGG+AGG | - | chr2.1:1892430-1892449 | MS.gene23946:CDS | 50.0% | |
TCGGGATTTAACCACCATCG+AGG | - | chr2.1:1890577-1890596 | MS.gene23946:CDS | 50.0% | |
! | GTAAGGTTGGATTTGGGGTG+AGG | - | chr2.1:1889914-1889933 | MS.gene23946:intron | 50.0% |
AGTTTGGTACAAGGGGAGGC+TGG | - | chr2.1:1890352-1890371 | MS.gene23946:intron | 55.0% | |
CAGGCCTCCATTCAAGTCTC+TGG | + | chr2.1:1892437-1892456 | None:intergenic | 55.0% | |
GCATTAGCCGAGGTTATGCC+CGG | - | chr2.1:1890739-1890758 | MS.gene23946:CDS | 55.0% | |
GTAAGCTCCGGGCATAACCT+CGG | + | chr2.1:1890749-1890768 | None:intergenic | 55.0% | |
GTTATGCCCGGAGCTTACCA+TGG | - | chr2.1:1890751-1890770 | MS.gene23946:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 1889832 | 1892459 | 1889832 | ID=MS.gene23946 |
chr2.1 | mRNA | 1889832 | 1892459 | 1889832 | ID=MS.gene23946.t1;Parent=MS.gene23946 |
chr2.1 | exon | 1892006 | 1892459 | 1892006 | ID=MS.gene23946.t1.exon1;Parent=MS.gene23946.t1 |
chr2.1 | CDS | 1892006 | 1892459 | 1892006 | ID=cds.MS.gene23946.t1;Parent=MS.gene23946.t1 |
chr2.1 | exon | 1890377 | 1891473 | 1890377 | ID=MS.gene23946.t1.exon2;Parent=MS.gene23946.t1 |
chr2.1 | CDS | 1890377 | 1891473 | 1890377 | ID=cds.MS.gene23946.t1;Parent=MS.gene23946.t1 |
chr2.1 | exon | 1890108 | 1890296 | 1890108 | ID=MS.gene23946.t1.exon3;Parent=MS.gene23946.t1 |
chr2.1 | CDS | 1890108 | 1890296 | 1890108 | ID=cds.MS.gene23946.t1;Parent=MS.gene23946.t1 |
chr2.1 | exon | 1889975 | 1890031 | 1889975 | ID=MS.gene23946.t1.exon4;Parent=MS.gene23946.t1 |
chr2.1 | CDS | 1889975 | 1890031 | 1889975 | ID=cds.MS.gene23946.t1;Parent=MS.gene23946.t1 |
chr2.1 | exon | 1889832 | 1889876 | 1889832 | ID=MS.gene23946.t1.exon5;Parent=MS.gene23946.t1 |
chr2.1 | CDS | 1889832 | 1889876 | 1889832 | ID=cds.MS.gene23946.t1;Parent=MS.gene23946.t1 |
Gene Sequence |
Protein sequence |