AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23964

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23964.t1 MTR_1g069725 99.441 358 2 0 1 358 111 468 0.0 743
MS.gene23964.t1 MTR_7g074650 53.803 355 156 5 2 352 441 791 5.96e-128 386
MS.gene23964.t1 MTR_4g076020 47.486 358 165 6 2 352 87 428 3.87e-107 321
MS.gene23964.t1 MTR_7g027190 34.127 378 220 10 1 354 302 674 3.69e-59 202
MS.gene23964.t1 MTR_3g065980 33.952 377 213 9 1 352 174 539 1.32e-58 198
MS.gene23964.t1 MTR_4g102790 35.405 370 217 10 3 353 296 662 2.76e-55 192
MS.gene23964.t1 MTR_4g077760 32.979 376 210 11 2 352 196 554 5.26e-48 170
MS.gene23964.t1 MTR_2g082090 32.615 371 221 11 3 352 216 578 4.46e-47 168
MS.gene23964.t1 MTR_1g029420 32.000 375 220 12 2 352 228 591 4.54e-46 166
MS.gene23964.t1 MTR_3g072710 31.250 384 228 11 4 357 127 504 4.92e-45 161
MS.gene23964.t1 MTR_3g089055 31.635 373 224 11 2 352 201 564 4.35e-44 160
MS.gene23964.t1 MTR_3g089055 31.635 373 224 11 2 352 206 569 4.50e-44 160
MS.gene23964.t1 MTR_5g058860 31.842 380 231 9 1 354 121 498 1.25e-43 157
MS.gene23964.t1 MTR_4g133660 33.770 305 184 8 64 354 244 544 4.48e-42 154
MS.gene23964.t1 MTR_8g442410 32.368 380 217 12 1 352 157 524 6.77e-42 153
MS.gene23964.t1 MTR_1g096030 30.026 383 231 14 1 352 82 458 6.78e-41 149
MS.gene23964.t1 MTR_4g104020 30.667 375 231 12 3 354 153 521 1.25e-39 147
MS.gene23964.t1 MTR_3g056110 30.081 369 233 12 3 352 179 541 1.38e-39 147
MS.gene23964.t1 MTR_5g094450 30.376 372 232 12 3 352 165 531 2.69e-39 146
MS.gene23964.t1 MTR_2g097410 27.614 373 240 11 3 352 375 740 1.15e-38 146
MS.gene23964.t1 MTR_5g097480 29.620 368 236 10 3 352 181 543 3.03e-38 144
MS.gene23964.t1 MTR_7g062120 28.378 370 239 12 3 352 376 739 1.12e-36 140
MS.gene23964.t1 MTR_3g022830 26.139 417 241 10 1 355 27 438 1.66e-35 134
MS.gene23964.t1 MTR_4g064150 27.056 377 239 13 3 352 365 732 3.24e-35 136
MS.gene23964.t1 MTR_2g034280 28.075 374 243 10 1 352 205 574 3.29e-35 135
MS.gene23964.t1 MTR_4g064120 26.203 374 244 11 3 351 258 624 7.51e-35 135
MS.gene23964.t1 MTR_4g064180 25.401 374 247 10 3 351 258 624 1.35e-34 134
MS.gene23964.t1 MTR_4g076140 27.400 427 233 13 1 355 50 471 3.11e-34 131
MS.gene23964.t1 MTR_2g034260 28.191 376 242 11 1 352 212 583 6.50e-34 132
MS.gene23964.t1 MTR_4g064160 28.841 371 236 13 3 352 320 683 1.42e-33 131
MS.gene23964.t1 MTR_2g097310 28.726 369 241 11 1 352 274 637 2.65e-33 130
MS.gene23964.t1 MTR_4g064200 28.267 375 233 14 2 352 287 649 6.95e-33 129
MS.gene23964.t1 MTR_2g034250 26.525 377 248 11 1 352 212 584 1.12e-32 128
MS.gene23964.t1 MTR_7g109580 27.473 364 245 9 4 352 194 553 1.28e-32 128
MS.gene23964.t1 MTR_2g026250 29.236 301 195 8 68 354 301 597 2.10e-32 127
MS.gene23964.t1 MTR_4g097080 26.933 375 244 12 1 352 135 502 2.44e-30 121
MS.gene23964.t1 MTR_2g097380 28.889 360 213 15 6 352 231 560 1.99e-29 119
MS.gene23964.t1 MTR_2g097350 27.100 369 247 11 1 352 276 639 3.28e-29 119
MS.gene23964.t1 MTR_2g097467 25.806 372 245 12 2 352 292 653 1.52e-28 117
MS.gene23964.t1 MTR_2g097390 27.642 369 245 11 1 352 277 640 1.57e-28 117
MS.gene23964.t1 MTR_5g015490 27.559 381 240 15 1 352 116 489 8.91e-28 114
MS.gene23964.t1 MTR_2g089100 24.427 393 252 10 1 352 54 442 7.53e-27 110
MS.gene23964.t1 MTR_2g097473 25.269 372 247 12 2 352 292 653 1.70e-26 111
MS.gene23964.t1 MTR_5g009080 32.292 192 123 3 3 189 60 249 2.23e-26 109
MS.gene23964.t1 MTR_5g009080 34.483 145 91 4 213 355 338 480 1.85e-15 77.8
MS.gene23964.t1 MTR_8g093070 26.347 334 222 10 32 352 173 495 8.19e-26 108
MS.gene23964.t1 MTR_2g097463 25.543 368 251 12 2 352 293 654 3.86e-25 107
MS.gene23964.t1 MTR_2g099110 24.339 378 255 10 2 352 77 450 1.32e-23 101
MS.gene23964.t1 MTR_4g026485 24.725 364 235 11 9 354 283 625 1.83e-23 102
MS.gene23964.t1 MTR_1g086970 24.927 341 233 11 32 352 140 477 2.40e-20 92.4
MS.gene23964.t1 MTR_7g057230 27.100 369 244 12 1 352 296 656 2.77e-20 92.8
MS.gene23964.t1 MTR_0092s0100 29.352 293 185 13 73 354 448 729 9.17e-20 91.3
MS.gene23964.t1 MTR_0092s0100 29.352 293 185 13 73 354 451 732 9.54e-20 91.3
MS.gene23964.t1 MTR_6g047750 25.269 372 251 10 1 352 297 661 8.12e-19 88.2
MS.gene23964.t1 MTR_4g095500 23.317 416 246 15 1 352 61 467 1.13e-17 84.3
MS.gene23964.t1 MTR_5g015950 23.022 417 248 17 1 352 37 445 8.25e-17 81.6
MS.gene23964.t1 MTR_3g053270 23.022 417 248 17 1 352 37 445 8.25e-17 81.6
MS.gene23964.t1 MTR_8g020840 23.773 387 244 12 3 352 175 547 5.16e-15 76.6
MS.gene23964.t1 MTR_8g077940 24.161 298 204 10 69 354 255 542 5.43e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23964.t1 AT3G54220 53.591 362 157 5 2 356 296 653 1.90e-129 385
MS.gene23964.t1 AT5G41920 47.671 365 174 7 1 355 45 402 1.40e-111 331
MS.gene23964.t1 AT1G14920 34.239 368 223 11 1 357 174 533 1.78e-56 192
MS.gene23964.t1 AT1G66350 34.722 360 216 9 1 352 157 505 8.69e-56 190
MS.gene23964.t1 AT2G01570 34.511 368 222 10 1 357 226 585 1.11e-55 191
MS.gene23964.t1 AT3G03450 33.884 363 222 11 3 352 187 544 3.21e-55 189
MS.gene23964.t1 AT5G17490 33.889 360 220 12 3 352 164 515 2.02e-51 179
MS.gene23964.t1 AT5G66770 33.423 371 217 13 2 352 223 583 9.16e-51 178
MS.gene23964.t1 AT1G63100 33.245 376 224 11 3 353 256 629 4.66e-50 177
MS.gene23964.t1 AT1G63100 33.245 376 224 11 3 353 281 654 8.28e-50 177
MS.gene23964.t1 AT3G50650 33.631 336 201 10 35 352 210 541 1.08e-44 161
MS.gene23964.t1 AT1G55580 33.108 296 180 7 74 352 150 444 6.35e-43 154
MS.gene23964.t1 AT2G04890 30.663 362 233 10 3 352 57 412 2.04e-42 152
MS.gene23964.t1 AT5G48150 29.459 370 235 11 3 352 126 489 5.54e-38 142
MS.gene23964.t1 AT5G48150 29.459 370 235 11 3 352 126 489 5.54e-38 142
MS.gene23964.t1 AT5G48150 29.459 370 235 11 3 352 126 489 5.54e-38 142
MS.gene23964.t1 AT5G48150 29.459 370 235 11 3 352 126 489 5.54e-38 142
MS.gene23964.t1 AT1G50600 30.623 369 233 10 2 352 162 525 6.79e-38 142
MS.gene23964.t1 AT1G50600 30.376 372 230 11 2 352 233 596 1.32e-37 142
MS.gene23964.t1 AT1G50600 30.376 372 230 11 2 352 237 600 1.55e-37 142
MS.gene23964.t1 AT1G21450 31.099 373 229 11 1 352 227 592 2.89e-37 141
MS.gene23964.t1 AT1G07530 29.067 375 241 12 3 357 400 769 5.30e-37 142
MS.gene23964.t1 AT1G07520 26.738 374 249 9 3 353 158 529 1.44e-36 139
MS.gene23964.t1 AT1G07520 26.738 374 249 9 3 353 158 529 1.44e-36 139
MS.gene23964.t1 AT1G07520 26.738 374 249 9 3 353 323 694 8.70e-36 138
MS.gene23964.t1 AT1G07520 26.738 374 249 9 3 353 322 693 8.92e-36 138
MS.gene23964.t1 AT2G29065 27.968 379 237 11 3 352 256 627 1.36e-35 137
MS.gene23964.t1 AT4G08250 28.729 362 231 11 18 358 128 483 5.09e-34 131
MS.gene23964.t1 AT5G59450 25.858 379 242 13 2 352 230 597 6.05e-33 129
MS.gene23964.t1 AT2G29060 26.613 372 250 10 1 352 286 654 3.16e-32 127
MS.gene23964.t1 AT2G29060 26.613 372 250 10 1 352 323 691 3.81e-32 127
MS.gene23964.t1 AT4G17230 29.189 370 239 10 1 352 160 524 8.17e-32 125
MS.gene23964.t1 AT4G17230 29.189 370 239 10 1 352 160 524 8.17e-32 125
MS.gene23964.t1 AT3G46600 26.810 373 244 11 1 352 6 370 1.20e-31 123
MS.gene23964.t1 AT3G46600 26.810 373 244 11 1 352 182 546 1.55e-30 122
MS.gene23964.t1 AT3G46600 26.810 373 244 11 1 352 214 578 1.71e-30 122
MS.gene23964.t1 AT4G37650 25.773 388 245 14 1 352 148 528 1.95e-27 113
MS.gene23964.t1 AT5G52510 27.676 383 233 13 1 352 270 639 7.34e-26 109
MS.gene23964.t1 AT2G37650 24.054 370 257 11 1 352 337 700 4.21e-25 107
MS.gene23964.t1 AT2G37650 24.054 370 257 11 1 352 349 712 4.26e-25 107
MS.gene23964.t1 AT3G49950 25.393 382 249 13 1 352 32 407 7.19e-24 102
MS.gene23964.t1 AT1G50420 30.102 196 128 4 1 189 59 252 1.27e-21 96.3
MS.gene23964.t1 AT1G50420 33.793 145 92 4 213 355 339 481 2.59e-16 80.5
MS.gene23964.t1 AT2G45160 24.857 350 209 13 35 354 315 640 4.40e-20 92.0
MS.gene23964.t1 AT3G60630 26.797 306 195 10 68 354 328 623 7.31e-20 91.3
MS.gene23964.t1 AT4G00150 27.666 347 217 15 24 357 233 558 3.67e-19 89.4
MS.gene23964.t1 AT3G13840 24.868 378 236 14 3 352 152 509 4.87e-18 85.5
MS.gene23964.t1 AT4G36710 24.407 295 205 9 69 352 197 484 1.89e-15 77.8

Find 63 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCTATAGCATGTAAATT+TGG 0.224828 1.3:-49288238 MS.gene23964:CDS
TAGCATTCATATCATTGATT+TGG 0.267686 1.3:-49288431 MS.gene23964:CDS
ATGATCCAAGTGAATCAAAA+AGG 0.269992 1.3:+49287996 None:intergenic
TTTGAGACTTCTTGAAGAAT+TGG 0.271799 1.3:-49288110 MS.gene23964:CDS
GTTGGACTTGTAGAACTTCT+AGG 0.281331 1.3:-49287676 MS.gene23964:CDS
ATGTTTCCATGTTACAAATT+AGG 0.299869 1.3:-49288204 MS.gene23964:CDS
TCACCAAATTTACATGCTAT+AGG 0.333976 1.3:+49288235 None:intergenic
CACCAAATTTACATGCTATA+GGG 0.337950 1.3:+49288236 None:intergenic
GTGAAGAAAAGTTTAGGCTT+TGG 0.358361 1.3:-49287874 MS.gene23964:CDS
GCCATTGAATTAGCACTCAT+TGG 0.370427 1.3:+49287812 None:intergenic
GTTTGTATACTGCTTCTTGT+TGG 0.371179 1.3:-49287694 MS.gene23964:CDS
ATGAGACACTTGCAGTTCAT+TGG 0.379453 1.3:-49288177 MS.gene23964:CDS
TATAGTCTTGCTCAAGTTGA+TGG 0.384763 1.3:-49287746 MS.gene23964:CDS
TGCATAGTGATGATTCTAAC+AGG 0.385974 1.3:-49287970 MS.gene23964:CDS
CATTCTTTGTATGATTCAAC+TGG 0.386760 1.3:-49288148 MS.gene23964:CDS
CTCAAGTTGATGGCATGTTA+AGG 0.419170 1.3:-49287736 MS.gene23964:CDS
AATGTGAAAATTTGATGAAA+GGG 0.441329 1.3:+49288497 None:intergenic
ATCAACAATATATTAGCAAT+TGG 0.455848 1.3:-49287914 MS.gene23964:CDS
GAAGTGGTGAAGAAAAGTTT+AGG 0.462022 1.3:-49287880 MS.gene23964:CDS
GCAATTTCAGTTGAAAATCA+TGG 0.462156 1.3:-49288712 MS.gene23964:CDS
ATGATTCAACTGGACCTGAT+TGG 0.462834 1.3:-49288138 MS.gene23964:CDS
AATGCTATTACAACGGTTCA+CGG 0.473963 1.3:+49288447 None:intergenic
CGGCCTTCAGTTCGAATGAC+CGG 0.476526 1.3:-49288346 MS.gene23964:CDS
ATGGAACTTCTTGTTGAGAC+GGG 0.483246 1.3:-49288310 MS.gene23964:CDS
GACCGGGATGGGAGCATCGA+TGG 0.487077 1.3:-49288329 MS.gene23964:CDS
ATATCATGCAAGGGCTTCAA+TGG 0.488838 1.3:-49288408 MS.gene23964:CDS
ATGGCATGTTAAGGCTTGGT+TGG 0.496635 1.3:-49287727 MS.gene23964:CDS
TCACGGCTTCGAGAATTGCT+TGG 0.498738 1.3:+49288464 None:intergenic
TCACATACTCGCGACTCGAA+TGG 0.516098 1.3:-49288374 MS.gene23964:CDS
TCCAATGAGTGCTAATTCAA+TGG 0.516236 1.3:-49287813 MS.gene23964:CDS
GTAGAACAAGATGTTAACAT+TGG 0.523714 1.3:-49288067 MS.gene23964:CDS
TGAACTGCAAGTGTCTCATT+AGG 0.524179 1.3:+49288181 None:intergenic
AACAATATATTAGCAATTGG+TGG 0.529310 1.3:-49287911 MS.gene23964:CDS
TCAGTTCGAATGACCGGGAT+GGG 0.530352 1.3:-49288340 MS.gene23964:CDS
GAACAAGATGTTAACATTGG+AGG 0.531900 1.3:-49288064 MS.gene23964:CDS
CATACTCGCGACTCGAATGG+AGG 0.534467 1.3:-49288371 MS.gene23964:CDS
ATCCCGGTCATTCGAACTGA+AGG 0.539893 1.3:+49288343 None:intergenic
ATTGATTTGGATATCATGCA+AGG 0.540452 1.3:-49288418 MS.gene23964:CDS
AGAGTGATGAATACATGGCT+TGG 0.543301 1.3:-49288586 MS.gene23964:CDS
TTCCATCGATGCTCCCATCC+CGG 0.545444 1.3:+49288327 None:intergenic
AACATGTATTCACCAGCTCA+TGG 0.559958 1.3:-49287770 MS.gene23964:CDS
TGATATGAATGCTATTACAA+CGG 0.565293 1.3:+49288440 None:intergenic
AACAAGATGTTAACATTGGA+GGG 0.567098 1.3:-49288063 MS.gene23964:CDS
CACTTGTAGAGAAGAATGAA+TGG 0.567099 1.3:+49288534 None:intergenic
AAATGTGAAAATTTGATGAA+AGG 0.571299 1.3:+49288496 None:intergenic
GATGGAACTTCTTGTTGAGA+CGG 0.571703 1.3:-49288311 MS.gene23964:CDS
ATTAGGCCTAATTTGTAACA+TGG 0.571929 1.3:+49288198 None:intergenic
AATGCAATGAACCAACAAAA+CGG 0.577957 1.3:+49288029 None:intergenic
GGCCTTCAGTTCGAATGACC+GGG 0.584830 1.3:-49288345 MS.gene23964:CDS
AACAGGAACATTGTTGAACA+TGG 0.588599 1.3:-49287953 MS.gene23964:CDS
TTCAGTTGAAAATCATGGTG+AGG 0.588959 1.3:-49288707 MS.gene23964:CDS
ATGTGAAAATTTGATGAAAG+GGG 0.589901 1.3:+49288498 None:intergenic
TTGATTTGGATATCATGCAA+GGG 0.592147 1.3:-49288417 MS.gene23964:CDS
TTCAGTTCGAATGACCGGGA+TGG 0.594862 1.3:-49288341 MS.gene23964:CDS
GTTGATGGCATGTTAAGGCT+TGG 0.599004 1.3:-49287731 MS.gene23964:CDS
TTAGTAGAGTGATGAATACA+TGG 0.620787 1.3:-49288591 MS.gene23964:CDS
ATGGTTCTATGATCAATCAA+AGG 0.621623 1.3:+49288553 None:intergenic
ATACTCGCGACTCGAATGGA+GGG 0.625698 1.3:-49288370 MS.gene23964:CDS
GCAAGACTATAACCATGAGC+TGG 0.626630 1.3:+49287758 None:intergenic
ATTGGTGGACCTAAGAGAAG+TGG 0.635188 1.3:-49287896 MS.gene23964:CDS
CCTTCTAATGGAATGTGCAG+TGG 0.643323 1.3:-49288734 None:intergenic
TGGAACTTCTTGTTGAGACG+GGG 0.658302 1.3:-49288309 MS.gene23964:CDS
TCGCGACTCGAATGGAGGGT+CGG 0.673281 1.3:-49288366 MS.gene23964:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGAAAATTTGATGAA+AGG + chr1.3:49287907-49287926 None:intergenic 20.0%
!! AATGTGAAAATTTGATGAAA+GGG + chr1.3:49287906-49287925 None:intergenic 20.0%
!! ATCAACAATATATTAGCAAT+TGG - chr1.3:49288486-49288505 MS.gene23964:CDS 20.0%
! AACAATATATTAGCAATTGG+TGG - chr1.3:49288489-49288508 MS.gene23964:CDS 25.0%
! ATGTGAAAATTTGATGAAAG+GGG + chr1.3:49287905-49287924 None:intergenic 25.0%
! ATGTTTCCATGTTACAAATT+AGG - chr1.3:49288196-49288215 MS.gene23964:CDS 25.0%
! TGATATGAATGCTATTACAA+CGG + chr1.3:49287963-49287982 None:intergenic 25.0%
!! TAGCATTCATATCATTGATT+TGG - chr1.3:49287969-49287988 MS.gene23964:CDS 25.0%
!! TCTACCAAAGTTATGATTTT+TGG + chr1.3:49288318-49288337 None:intergenic 25.0%
AACAAGATGTTAACATTGGA+GGG - chr1.3:49288337-49288356 MS.gene23964:CDS 30.0%
AATGCAATGAACCAACAAAA+CGG + chr1.3:49288374-49288393 None:intergenic 30.0%
ATGATCCAAGTGAATCAAAA+AGG + chr1.3:49288407-49288426 None:intergenic 30.0%
CACCAAATTTACATGCTATA+GGG + chr1.3:49288167-49288186 None:intergenic 30.0%
CATTCTTTGTATGATTCAAC+TGG - chr1.3:49288252-49288271 MS.gene23964:CDS 30.0%
GCAATTTCAGTTGAAAATCA+TGG - chr1.3:49287688-49287707 MS.gene23964:CDS 30.0%
GGAACCAAAAATCATAACTT+TGG - chr1.3:49288311-49288330 MS.gene23964:CDS 30.0%
GTAGAACAAGATGTTAACAT+TGG - chr1.3:49288333-49288352 MS.gene23964:CDS 30.0%
TACCCTATAGCATGTAAATT+TGG - chr1.3:49288162-49288181 MS.gene23964:CDS 30.0%
TCACCAAATTTACATGCTAT+AGG + chr1.3:49288168-49288187 None:intergenic 30.0%
TGATCCAAGTGAATCAAAAA+GGG + chr1.3:49288406-49288425 None:intergenic 30.0%
TTAGTAGAGTGATGAATACA+TGG - chr1.3:49287809-49287828 MS.gene23964:CDS 30.0%
! ATCTTTCGAATTTTGCAAGA+AGG - chr1.3:49288118-49288137 MS.gene23964:CDS 30.0%
! ATGGTTCTATGATCAATCAA+AGG + chr1.3:49287850-49287869 None:intergenic 30.0%
! ATTAGGCCTAATTTGTAACA+TGG + chr1.3:49288205-49288224 None:intergenic 30.0%
! TTTGAGACTTCTTGAAGAAT+TGG - chr1.3:49288290-49288309 MS.gene23964:CDS 30.0%
!! ATTGATTTGGATATCATGCA+AGG - chr1.3:49287982-49288001 MS.gene23964:CDS 30.0%
!! TTGATTTGGATATCATGCAA+GGG - chr1.3:49287983-49288002 MS.gene23964:CDS 30.0%
AACAGGAACATTGTTGAACA+TGG - chr1.3:49288447-49288466 MS.gene23964:CDS 35.0%
AATGCTATTACAACGGTTCA+CGG + chr1.3:49287956-49287975 None:intergenic 35.0%
CACTTGTAGAGAAGAATGAA+TGG + chr1.3:49287869-49287888 None:intergenic 35.0%
GAACAAGATGTTAACATTGG+AGG - chr1.3:49288336-49288355 MS.gene23964:CDS 35.0%
GAAGTGGTGAAGAAAAGTTT+AGG - chr1.3:49288520-49288539 MS.gene23964:CDS 35.0%
GTGAAGAAAAGTTTAGGCTT+TGG - chr1.3:49288526-49288545 MS.gene23964:CDS 35.0%
GTTTGTATACTGCTTCTTGT+TGG - chr1.3:49288706-49288725 MS.gene23964:CDS 35.0%
TCCAATGAGTGCTAATTCAA+TGG - chr1.3:49288587-49288606 MS.gene23964:CDS 35.0%
TGCATAGTGATGATTCTAAC+AGG - chr1.3:49288430-49288449 MS.gene23964:CDS 35.0%
TTCAGTTGAAAATCATGGTG+AGG - chr1.3:49287693-49287712 MS.gene23964:CDS 35.0%
! AGTCTCAAAGTTTTCCAATC+AGG + chr1.3:49288279-49288298 None:intergenic 35.0%
! TTTTCTTCACCACTTCTCTT+AGG + chr1.3:49288516-49288535 None:intergenic 35.0%
!! TAACATTGGAGGGTCATTTT+TGG - chr1.3:49288347-49288366 MS.gene23964:CDS 35.0%
!! TATAGTCTTGCTCAAGTTGA+TGG - chr1.3:49288654-49288673 MS.gene23964:CDS 35.0%
!! TCAGCACATGAAGTTTTGTA+AGG + chr1.3:49287757-49287776 None:intergenic 35.0%
!! TCATTTTTGGACCGTTTTGT+TGG - chr1.3:49288360-49288379 MS.gene23964:CDS 35.0%
!!! TGCAAGAAATAGTTTTGAGC+AGG - chr1.3:49288563-49288582 MS.gene23964:CDS 35.0%
AACATGTATTCACCAGCTCA+TGG - chr1.3:49288630-49288649 MS.gene23964:CDS 40.0%
AGAGTGATGAATACATGGCT+TGG - chr1.3:49287814-49287833 MS.gene23964:CDS 40.0%
ATATCATGCAAGGGCTTCAA+TGG - chr1.3:49287992-49288011 MS.gene23964:CDS 40.0%
ATGAGACACTTGCAGTTCAT+TGG - chr1.3:49288223-49288242 MS.gene23964:CDS 40.0%
ATGATTCAACTGGACCTGAT+TGG - chr1.3:49288262-49288281 MS.gene23964:CDS 40.0%
ATGGAACTTCTTGTTGAGAC+GGG - chr1.3:49288090-49288109 MS.gene23964:CDS 40.0%
GATGGAACTTCTTGTTGAGA+CGG - chr1.3:49288089-49288108 MS.gene23964:CDS 40.0%
GCCATTGAATTAGCACTCAT+TGG + chr1.3:49288591-49288610 None:intergenic 40.0%
GCGAGTATGTGAAAAAAAGC+AGG + chr1.3:49288018-49288037 None:intergenic 40.0%
GTTGGACTTGTAGAACTTCT+AGG - chr1.3:49288724-49288743 MS.gene23964:CDS 40.0%
TCCAAGTGAATCAAAAAGGG+TGG + chr1.3:49288403-49288422 None:intergenic 40.0%
TGAACTGCAAGTGTCTCATT+AGG + chr1.3:49288222-49288241 None:intergenic 40.0%
! TCGAATTTTGCAAGAAGGCT+CGG - chr1.3:49288123-49288142 MS.gene23964:CDS 40.0%
!! CTCAAGTTGATGGCATGTTA+AGG - chr1.3:49288664-49288683 MS.gene23964:CDS 40.0%
!! TCCACCCTTTTTGATTCACT+TGG - chr1.3:49288399-49288418 MS.gene23964:CDS 40.0%
GCAAGACTATAACCATGAGC+TGG + chr1.3:49288645-49288664 None:intergenic 45.0%
TGGAACTTCTTGTTGAGACG+GGG - chr1.3:49288091-49288110 MS.gene23964:CDS 45.0%
! ATGGCATGTTAAGGCTTGGT+TGG - chr1.3:49288673-49288692 MS.gene23964:CDS 45.0%
! ATTGGTGGACCTAAGAGAAG+TGG - chr1.3:49288504-49288523 MS.gene23964:CDS 45.0%
!! GTTGATGGCATGTTAAGGCT+TGG - chr1.3:49288669-49288688 MS.gene23964:CDS 45.0%
ATACTCGCGACTCGAATGGA+GGG - chr1.3:49288030-49288049 MS.gene23964:CDS 50.0%
ATCCCGGTCATTCGAACTGA+AGG + chr1.3:49288060-49288079 None:intergenic 50.0%
TCACATACTCGCGACTCGAA+TGG - chr1.3:49288026-49288045 MS.gene23964:CDS 50.0%
TCACGGCTTCGAGAATTGCT+TGG + chr1.3:49287939-49287958 None:intergenic 50.0%
TCAGTTCGAATGACCGGGAT+GGG - chr1.3:49288060-49288079 MS.gene23964:CDS 50.0%
TTCAGTTCGAATGACCGGGA+TGG - chr1.3:49288059-49288078 MS.gene23964:CDS 50.0%
CATACTCGCGACTCGAATGG+AGG - chr1.3:49288029-49288048 MS.gene23964:CDS 55.0%
CGGCCTTCAGTTCGAATGAC+CGG - chr1.3:49288054-49288073 MS.gene23964:CDS 55.0%
GGCCTTCAGTTCGAATGACC+GGG - chr1.3:49288055-49288074 MS.gene23964:CDS 55.0%
TTCCATCGATGCTCCCATCC+CGG + chr1.3:49288076-49288095 None:intergenic 55.0%
TCGCGACTCGAATGGAGGGT+CGG - chr1.3:49288034-49288053 MS.gene23964:CDS 60.0%
!! GACCGGGATGGGAGCATCGA+TGG - chr1.3:49288071-49288090 MS.gene23964:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 49287673 49288749 49287673 ID=MS.gene23964
chr1.3 mRNA 49287673 49288749 49287673 ID=MS.gene23964.t1;Parent=MS.gene23964
chr1.3 exon 49287673 49288749 49287673 ID=MS.gene23964.t1.exon1;Parent=MS.gene23964.t1
chr1.3 CDS 49287673 49288749 49287673 ID=cds.MS.gene23964.t1;Parent=MS.gene23964.t1
Gene Sequence

>MS.gene23964

ATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACTTCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTGTTGGACTTGTAGAACTTCTAGGTAG
Protein sequence

>MS.gene23964.t1

MECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELVARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASCWTCRTSR