AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23987

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23987.t1 MTR_4g094632 60.645 155 58 1 1 155 1 152 2.00e-60 184
MS.gene23987.t1 MTR_4g094638 65.823 158 51 1 1 155 1 158 1.15e-58 180
MS.gene23987.t1 MTR_8g079502 39.157 166 88 3 1 155 1 164 1.06e-28 104
MS.gene23987.t1 MTR_8g046350 37.654 162 90 3 1 155 1 158 1.41e-26 98.6
MS.gene23987.t1 MTR_1g047550 35.976 164 96 2 1 155 1 164 2.49e-26 98.2
MS.gene23987.t1 MTR_8g051580 37.805 164 93 2 1 155 1 164 1.54e-25 96.3
MS.gene23987.t1 MTR_1g054265 38.235 170 84 5 1 155 1 164 1.71e-25 95.9
MS.gene23987.t1 MTR_1g063160 36.585 164 95 2 1 155 1 164 4.90e-25 95.1
MS.gene23987.t1 MTR_4g131030 34.615 182 91 5 1 155 1 181 8.21e-24 92.8
MS.gene23987.t1 MTR_3g080940 36.306 157 82 4 1 141 8 162 4.46e-23 90.5
MS.gene23987.t1 MTR_1g108580 36.424 151 82 3 2 138 9 159 1.18e-21 87.4
MS.gene23987.t1 MTR_3g030770 33.775 151 86 3 2 138 9 159 2.26e-19 81.3
MS.gene23987.t1 MTR_1g108510 33.775 151 86 3 2 138 9 159 4.38e-19 80.5
MS.gene23987.t1 MTR_2g093190 34.437 151 85 3 2 138 9 159 5.75e-19 80.5
MS.gene23987.t1 MTR_1g106070 31.138 167 101 4 2 154 9 175 1.50e-18 78.2
MS.gene23987.t1 MTR_2g105290 31.325 166 102 4 1 155 11 175 3.05e-18 77.4
MS.gene23987.t1 MTR_3g052920 31.953 169 97 3 2 154 9 175 4.11e-18 78.2
MS.gene23987.t1 MTR_7g075870 31.852 135 89 1 1 135 1 132 7.64e-18 77.0
MS.gene23987.t1 MTR_7g028448 32.576 132 79 3 17 142 27 154 1.09e-17 75.5
MS.gene23987.t1 MTR_4g036915 32.576 132 79 3 17 142 27 154 1.09e-17 75.5
MS.gene23987.t1 MTR_5g045560 36.522 115 67 2 1 113 8 118 4.74e-17 75.5
MS.gene23987.t1 MTR_5g066180 31.690 142 78 3 1 135 1 130 1.05e-16 74.3
MS.gene23987.t1 MTR_3g052870 37.143 105 64 1 2 104 9 113 1.05e-16 74.3
MS.gene23987.t1 MTR_7g075870 32.353 136 88 2 1 135 1 133 1.07e-16 73.9
MS.gene23987.t1 MTR_8g043650 29.940 167 103 3 2 154 9 175 1.14e-16 74.3
MS.gene23987.t1 MTR_2g009890 37.037 108 64 2 1 108 1 104 1.43e-16 74.7
MS.gene23987.t1 MTR_1g105920 37.143 105 64 1 2 104 9 113 2.47e-16 73.6
MS.gene23987.t1 MTR_5g053390 36.207 116 65 1 2 117 9 115 2.53e-16 73.6
MS.gene23987.t1 MTR_1g105910 37.143 105 64 1 2 104 9 113 3.90e-16 72.8
MS.gene23987.t1 MTR_1g012570 28.144 167 106 3 2 154 9 175 6.10e-16 72.4
MS.gene23987.t1 MTR_4g109830 31.724 145 88 3 1 144 1 135 7.43e-16 72.0
MS.gene23987.t1 MTR_5g032520 32.624 141 80 3 1 135 1 132 1.20e-15 71.6
MS.gene23987.t1 MTR_3g452380 29.630 135 92 1 1 135 16 147 1.25e-15 71.6
MS.gene23987.t1 MTR_8g033220 32.877 146 90 2 1 143 1 141 1.45e-15 71.2
MS.gene23987.t1 MTR_8g033220 32.877 146 90 2 1 143 1 141 1.97e-15 70.9
MS.gene23987.t1 MTR_8g086290 31.126 151 86 4 2 138 12 158 1.99e-15 70.1
MS.gene23987.t1 MTR_3g113030 36.364 110 59 2 1 99 1 110 2.82e-15 70.5
MS.gene23987.t1 MTR_1g075600 30.935 139 87 3 2 131 9 147 4.00e-15 70.1
MS.gene23987.t1 MTR_3g030780 33.333 105 68 1 2 104 9 113 7.06e-15 67.4
MS.gene23987.t1 MTR_5g032150 31.915 141 81 3 1 135 1 132 7.07e-15 69.3
MS.gene23987.t1 MTR_1g038300 31.915 141 86 3 1 135 1 137 8.90e-15 69.3
MS.gene23987.t1 MTR_5g066960 50.000 60 30 0 1 60 1 60 1.17e-14 64.7
MS.gene23987.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 1.46e-14 68.9
MS.gene23987.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 1.47e-14 68.6
MS.gene23987.t1 MTR_0121s0100 35.714 98 61 1 2 97 9 106 1.54e-14 66.6
MS.gene23987.t1 MTR_0003s0590 52.542 59 28 0 1 59 1 59 1.55e-14 68.9
MS.gene23987.t1 MTR_2g030740 35.238 105 66 1 2 104 9 113 2.69e-14 68.2
MS.gene23987.t1 MTR_1g077360 40.278 72 43 0 2 73 9 80 3.20e-14 67.8
MS.gene23987.t1 MTR_8g033270 33.333 138 72 3 1 118 1 138 4.02e-14 67.8
MS.gene23987.t1 MTR_3g088615 44.615 65 36 0 1 65 1 65 5.58e-14 66.2
MS.gene23987.t1 MTR_7g016630 31.387 137 84 4 1 136 1 128 6.72e-14 67.4
MS.gene23987.t1 MTR_2g085250 43.478 69 39 0 2 70 9 77 6.99e-14 67.0
MS.gene23987.t1 MTR_2g085280 43.478 69 39 0 2 70 9 77 7.07e-14 67.0
MS.gene23987.t1 MTR_1g053070 31.250 144 95 2 1 143 1 141 7.11e-14 67.0
MS.gene23987.t1 MTR_1g029670 32.727 110 63 2 1 99 1 110 8.07e-14 65.9
MS.gene23987.t1 MTR_4g093970 33.600 125 73 2 1 117 27 149 8.79e-14 66.6
MS.gene23987.t1 MTR_3g005530 32.090 134 70 4 1 113 1 134 1.05e-13 66.2
MS.gene23987.t1 MTR_5g046790 31.159 138 88 2 1 137 1 132 1.07e-13 65.9
MS.gene23987.t1 MTR_0121s0080 35.238 105 66 1 2 104 9 113 1.72e-13 65.9
MS.gene23987.t1 MTR_5g055100 36.842 95 58 1 2 94 9 103 1.89e-13 65.9
MS.gene23987.t1 MTR_5g021270 32.000 150 85 6 1 146 1 137 2.10e-13 65.5
MS.gene23987.t1 MTR_5g021270 32.857 140 80 5 1 136 1 130 2.18e-13 65.5
MS.gene23987.t1 MTR_4g102530 31.169 154 93 3 1 149 1 146 2.70e-13 64.7
MS.gene23987.t1 MTR_6g464720 45.902 61 33 0 1 61 1 61 3.35e-13 65.1
MS.gene23987.t1 MTR_4g127140 30.114 176 101 4 1 155 11 185 7.00e-13 63.5
MS.gene23987.t1 MTR_3g102570 40.244 82 48 1 1 81 1 82 8.16e-13 64.7
MS.gene23987.t1 MTR_4g093030 48.333 60 31 0 1 60 1 60 1.51e-12 62.0
MS.gene23987.t1 MTR_7g016600 45.902 61 33 0 1 61 1 61 1.60e-12 63.5
MS.gene23987.t1 MTR_1g101970 33.654 104 60 1 1 104 1 95 2.18e-12 62.0
MS.gene23987.t1 MTR_6g015975 40.789 76 44 1 1 75 1 76 3.45e-12 62.4
MS.gene23987.t1 MTR_8g087860 24.342 152 112 1 1 152 17 165 3.60e-12 62.4
MS.gene23987.t1 MTR_2g461710 42.373 59 34 0 1 59 1 59 4.46e-12 58.2
MS.gene23987.t1 MTR_5g046870 44.262 61 34 0 1 61 1 61 5.23e-12 59.3
MS.gene23987.t1 MTR_8g097090 45.902 61 33 0 1 61 1 61 5.62e-12 61.6
MS.gene23987.t1 MTR_3g084980 45.902 61 33 0 1 61 1 61 6.03e-12 61.6
MS.gene23987.t1 MTR_6g081890 49.383 81 30 1 63 143 80 149 6.64e-12 60.5
MS.gene23987.t1 MTR_8g066260 42.623 61 35 0 1 61 1 61 8.61e-12 61.2
MS.gene23987.t1 MTR_1g105905 31.959 97 64 1 11 105 1 97 1.16e-11 60.8
MS.gene23987.t1 MTR_3g109930 30.769 143 85 4 15 144 15 156 1.17e-11 60.1
MS.gene23987.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 1.18e-11 61.6
MS.gene23987.t1 MTR_4g109810 44.262 61 34 0 1 61 1 61 1.51e-11 60.5
MS.gene23987.t1 MTR_7g075850 31.707 123 77 2 1 122 1 117 1.99e-11 60.5
MS.gene23987.t1 MTR_8g022970 31.847 157 90 4 3 144 19 173 2.11e-11 59.3
MS.gene23987.t1 MTR_2g017865 44.262 61 34 0 1 61 16 76 3.81e-11 59.7
MS.gene23987.t1 MTR_3g067875 47.273 55 29 0 11 65 1 55 3.89e-11 55.8
MS.gene23987.t1 MTR_4g036050 33.913 115 68 4 1 113 1 109 4.82e-11 58.2
MS.gene23987.t1 MTR_4g036050 33.913 115 68 4 1 113 1 109 5.09e-11 58.5
MS.gene23987.t1 MTR_4g036050 33.913 115 68 4 1 113 1 109 5.42e-11 58.5
MS.gene23987.t1 MTR_4g036050 33.913 115 68 4 1 113 1 109 6.09e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23987.t1 AT2G34440 34.884 172 93 4 1 153 1 172 1.34e-25 96.3
MS.gene23987.t1 AT3G66656 55.224 67 30 0 1 67 1 67 4.13e-21 84.7
MS.gene23987.t1 AT3G57230 35.556 135 83 2 1 135 1 131 1.79e-20 82.4
MS.gene23987.t1 AT2G45660 33.333 135 87 1 1 135 1 132 5.86e-20 81.3
MS.gene23987.t1 AT3G57230 36.296 135 82 2 1 135 1 131 9.66e-20 82.8
MS.gene23987.t1 AT3G57230 36.296 135 82 2 1 135 1 131 9.66e-20 82.8
MS.gene23987.t1 AT2G45660 33.333 135 87 1 1 135 1 132 1.85e-19 81.3
MS.gene23987.t1 AT2G24840 33.544 158 86 4 1 141 62 217 4.30e-19 81.3
MS.gene23987.t1 AT1G47760 35.374 147 75 5 1 141 1 133 2.75e-18 77.8
MS.gene23987.t1 AT1G28460 47.826 69 36 0 2 70 8 76 3.83e-18 77.0
MS.gene23987.t1 AT1G29962 46.377 69 37 0 2 70 8 76 5.77e-18 76.6
MS.gene23987.t1 AT3G54340 30.556 144 76 3 1 135 1 129 3.80e-16 72.8
MS.gene23987.t1 AT2G45650 32.639 144 90 1 1 144 1 137 4.00e-16 73.2
MS.gene23987.t1 AT1G65360 36.449 107 66 2 1 106 6 111 6.35e-16 72.4
MS.gene23987.t1 AT4G37940 46.377 69 37 0 1 69 1 69 9.41e-16 72.0
MS.gene23987.t1 AT4G37940 46.377 69 37 0 1 69 1 69 1.14e-15 71.2
MS.gene23987.t1 AT2G22540 47.826 69 36 0 1 69 1 69 1.60e-15 71.2
MS.gene23987.t1 AT2G22540 47.826 69 36 0 1 69 1 69 1.60e-15 71.2
MS.gene23987.t1 AT4G37940 46.377 69 37 0 1 69 1 69 1.68e-15 70.1
MS.gene23987.t1 AT4G24540 32.624 141 80 3 1 135 1 132 4.18e-15 70.1
MS.gene23987.t1 AT4G22950 30.464 151 97 2 1 149 1 145 5.43e-15 68.6
MS.gene23987.t1 AT4G22950 30.464 151 97 2 1 149 1 145 1.05e-14 68.9
MS.gene23987.t1 AT4G22950 30.464 151 97 2 1 149 1 145 1.05e-14 68.9
MS.gene23987.t1 AT5G10140 47.458 59 31 0 1 59 1 59 2.03e-14 67.0
MS.gene23987.t1 AT5G10140 47.458 59 31 0 1 59 1 59 2.38e-14 67.4
MS.gene23987.t1 AT1G01530 33.962 106 70 0 1 106 6 111 2.44e-14 68.2
MS.gene23987.t1 AT5G20240 45.455 66 36 0 1 66 1 66 2.74e-14 66.2
MS.gene23987.t1 AT5G10140 47.458 59 31 0 1 59 1 59 2.83e-14 67.0
MS.gene23987.t1 AT2G14210 49.180 61 31 0 1 61 1 61 3.44e-14 67.8
MS.gene23987.t1 AT5G10140 47.458 59 31 0 1 59 1 59 3.56e-14 67.0
MS.gene23987.t1 AT3G57390 39.759 83 50 0 1 83 1 83 3.70e-14 67.4
MS.gene23987.t1 AT4G09960 28.000 150 105 1 1 150 2 148 4.02e-14 67.4
MS.gene23987.t1 AT4G09960 28.000 150 105 1 1 150 1 147 4.05e-14 67.4
MS.gene23987.t1 AT2G14210 49.180 61 31 0 1 61 1 61 4.06e-14 67.4
MS.gene23987.t1 AT5G65070 44.068 59 33 0 1 59 1 59 4.70e-14 65.9
MS.gene23987.t1 AT4G09960 28.000 150 105 1 1 150 11 157 4.94e-14 67.4
MS.gene23987.t1 AT4G09960 28.000 150 105 1 1 150 27 173 5.24e-14 67.4
MS.gene23987.t1 AT5G20240 45.455 66 36 0 1 66 1 66 5.24e-14 67.0
MS.gene23987.t1 AT3G57390 39.759 83 50 0 1 83 1 83 5.35e-14 67.4
MS.gene23987.t1 AT3G04100 45.455 66 36 0 2 67 14 79 5.38e-14 66.6
MS.gene23987.t1 AT1G28450 42.029 69 40 0 2 70 8 76 5.82e-14 66.2
MS.gene23987.t1 AT5G51860 31.579 152 95 4 1 152 1 143 5.89e-14 66.6
MS.gene23987.t1 AT5G51860 31.579 152 95 4 1 152 1 143 6.80e-14 66.2
MS.gene23987.t1 AT5G13790 49.153 59 30 0 1 59 1 59 6.87e-14 67.4
MS.gene23987.t1 AT5G13790 49.153 59 30 0 1 59 1 59 6.96e-14 67.4
MS.gene23987.t1 AT5G65070 44.068 59 33 0 1 59 1 59 7.87e-14 66.2
MS.gene23987.t1 AT5G60440 32.370 173 94 5 2 154 7 176 8.10e-14 67.4
MS.gene23987.t1 AT4G09960 32.031 128 67 3 1 108 1 128 9.20e-14 66.2
MS.gene23987.t1 AT4G09960 27.815 151 106 1 1 151 96 243 1.01e-13 67.4
MS.gene23987.t1 AT5G60910 30.345 145 90 3 1 144 1 135 1.03e-13 66.6
MS.gene23987.t1 AT2G42830 27.632 152 107 1 1 152 16 164 1.20e-13 66.6
MS.gene23987.t1 AT2G42830 27.632 152 107 1 1 152 16 164 1.28e-13 66.2
MS.gene23987.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.61e-13 64.7
MS.gene23987.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.95e-13 65.5
MS.gene23987.t1 AT5G65070 44.068 59 33 0 1 59 1 59 2.06e-13 65.5
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 2.09e-13 64.3
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 2.09e-13 64.3
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 2.09e-13 64.3
MS.gene23987.t1 AT5G51870 42.029 69 40 0 1 69 24 92 2.26e-13 65.1
MS.gene23987.t1 AT5G51870 42.029 69 40 0 1 69 1 69 2.56e-13 65.1
MS.gene23987.t1 AT5G62165 44.444 63 35 0 1 63 1 63 2.65e-13 63.9
MS.gene23987.t1 AT5G62165 44.444 63 35 0 1 63 1 63 2.65e-13 63.9
MS.gene23987.t1 AT5G62165 44.444 63 35 0 1 63 1 63 2.65e-13 63.9
MS.gene23987.t1 AT5G62165 44.444 63 35 0 1 63 1 63 2.65e-13 63.9
MS.gene23987.t1 AT5G62165 44.444 63 35 0 1 63 1 63 2.65e-13 63.9
MS.gene23987.t1 AT5G65070 44.068 59 33 0 1 59 1 59 2.66e-13 65.1
MS.gene23987.t1 AT5G51870 42.029 69 40 0 1 69 11 79 3.91e-13 64.7
MS.gene23987.t1 AT5G65070 44.068 59 33 0 1 59 1 59 3.94e-13 64.7
MS.gene23987.t1 AT5G62165 39.189 74 45 0 1 74 1 74 4.54e-13 62.0
MS.gene23987.t1 AT4G11880 47.541 61 32 0 1 61 1 61 5.29e-13 63.5
MS.gene23987.t1 AT4G11880 47.541 61 32 0 1 61 1 61 5.29e-13 63.5
MS.gene23987.t1 AT5G23260 50.847 59 29 0 1 59 1 59 5.65e-13 64.7
MS.gene23987.t1 AT5G23260 50.847 59 29 0 1 59 17 75 5.92e-13 64.7
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 6.09e-13 63.9
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 6.09e-13 63.9
MS.gene23987.t1 AT5G23260 50.847 59 29 0 1 59 17 75 6.27e-13 64.7
MS.gene23987.t1 AT5G23260 50.847 59 29 0 1 59 1 59 6.35e-13 64.3
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 6.40e-13 63.9
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 6.40e-13 63.9
MS.gene23987.t1 AT5G62165 39.726 73 44 0 1 73 1 73 6.40e-13 63.9
MS.gene23987.t1 AT4G37435 49.123 57 29 0 1 57 1 57 6.81e-13 63.5
MS.gene23987.t1 AT5G65050 44.068 59 33 0 1 59 1 59 6.90e-13 63.2
MS.gene23987.t1 AT3G58780 26.797 153 100 2 1 152 16 157 7.65e-13 64.3
MS.gene23987.t1 AT3G58780 27.451 153 106 2 1 152 16 164 8.23e-13 64.3
MS.gene23987.t1 AT3G58780 27.451 153 106 2 1 152 22 170 9.28e-13 64.3
MS.gene23987.t1 AT3G30260 40.278 72 42 1 1 71 1 72 1.01e-12 63.9
MS.gene23987.t1 AT4G11880 47.541 61 32 0 1 61 1 61 1.30e-12 63.2
MS.gene23987.t1 AT4G11880 47.541 61 32 0 1 61 1 61 1.30e-12 63.2
MS.gene23987.t1 AT3G61120 40.845 71 42 0 1 71 1 71 1.69e-12 63.2
MS.gene23987.t1 AT1G26310 36.559 93 56 2 1 92 1 91 1.92e-12 63.2
MS.gene23987.t1 AT4G36590 48.387 62 32 0 2 63 7 68 1.95e-12 63.2
MS.gene23987.t1 AT3G58780 28.889 135 93 1 1 135 16 147 2.16e-12 63.5
MS.gene23987.t1 AT3G02310 45.902 61 33 0 1 61 1 61 2.26e-12 62.4
MS.gene23987.t1 AT2G03710 46.774 62 32 1 1 61 1 62 2.31e-12 62.0
MS.gene23987.t1 AT5G65050 44.068 59 33 0 1 59 1 59 2.76e-12 62.0
MS.gene23987.t1 AT5G65050 44.068 59 33 0 1 59 1 59 2.79e-12 62.0
MS.gene23987.t1 AT5G65060 42.373 59 34 0 1 59 1 59 2.87e-12 62.0
MS.gene23987.t1 AT3G58780 46.774 62 33 0 1 62 16 77 2.90e-12 62.8
MS.gene23987.t1 AT2G22540 50.909 55 27 0 1 55 1 55 3.04e-12 62.4
MS.gene23987.t1 AT5G65050 44.068 59 33 0 1 59 1 59 3.07e-12 61.6
MS.gene23987.t1 AT1G71692 39.474 76 45 1 1 75 1 76 3.70e-12 62.0
MS.gene23987.t1 AT1G69120 36.667 90 54 2 1 89 1 88 3.76e-12 62.4
MS.gene23987.t1 AT5G15800 45.902 61 33 0 1 61 1 61 4.59e-12 62.0
MS.gene23987.t1 AT1G69120 36.667 90 54 2 1 89 1 88 5.42e-12 62.0
MS.gene23987.t1 AT5G65060 42.373 59 34 0 1 59 1 59 5.94e-12 60.8
MS.gene23987.t1 AT5G65060 42.373 59 34 0 1 59 1 59 6.00e-12 61.2
MS.gene23987.t1 AT3G02310 45.902 61 33 0 1 61 1 61 6.35e-12 61.6
MS.gene23987.t1 AT5G15800 45.902 61 33 0 1 61 1 61 6.83e-12 62.0
MS.gene23987.t1 AT2G22630 45.902 61 33 0 1 61 1 61 8.45e-12 61.2
MS.gene23987.t1 AT2G22630 45.902 61 33 0 1 61 1 61 8.45e-12 61.2
MS.gene23987.t1 AT1G24260 45.902 61 33 0 1 61 1 61 8.60e-12 61.6
MS.gene23987.t1 AT1G24260 45.902 61 33 0 1 61 1 61 8.94e-12 61.2
MS.gene23987.t1 AT1G24260 45.902 61 33 0 1 61 1 61 9.39e-12 61.2
MS.gene23987.t1 AT2G03710 31.293 147 87 5 1 139 1 141 9.99e-12 61.2
MS.gene23987.t1 AT2G03710 31.293 147 87 5 1 139 1 141 1.05e-11 61.2
MS.gene23987.t1 AT2G03060 51.923 52 25 0 1 52 1 52 1.31e-11 61.6
MS.gene23987.t1 AT2G03060 51.923 52 25 0 1 52 1 52 1.33e-11 61.6
MS.gene23987.t1 AT2G03060 51.923 52 25 0 1 52 1 52 1.33e-11 61.6
MS.gene23987.t1 AT2G03060 51.923 52 25 0 1 52 1 52 1.33e-11 61.6
MS.gene23987.t1 AT1G72350 42.857 70 38 1 2 71 43 110 2.43e-11 60.1
MS.gene23987.t1 AT2G26320 39.130 69 40 1 1 67 17 85 3.78e-11 57.0
MS.gene23987.t1 AT1G22130 50.980 51 25 0 1 51 1 51 5.35e-11 59.7
MS.gene23987.t1 AT4G18960 33.333 132 58 4 2 108 18 144 5.72e-11 59.3

Find 26 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTACTCGACAAAGAACTTA+TGG 0.280024 1.3:-48993077 MS.gene23987:CDS
GCTGGTAACCCATTTGCTTT+CGG 0.351171 1.3:-48993199 MS.gene23987:CDS
AATGCTAGAGTTGGTATAGT+TGG 0.376951 1.3:-48993232 MS.gene23987:CDS
GAGGGAGAACCGAAAGCAAA+TGG 0.413374 1.3:+48993190 None:intergenic
TCAAGATCATCATAGGCAAT+AGG 0.426879 1.3:+48993004 None:intergenic
ATCAAAATCAAGATCATCAT+AGG 0.431840 1.3:+48992997 None:intergenic
GTACTCGACAAAGAACTTAT+GGG 0.458988 1.3:-48993076 MS.gene23987:CDS
ATCACATAGGTTTCTTTGCA+AGG 0.474087 1.3:+48992903 None:intergenic
AAAGCAAATGGGTTACCAGC+AGG 0.484877 1.3:+48993202 None:intergenic
ATTCTTTGTAATGCTAGAGT+TGG 0.486006 1.3:-48993241 MS.gene23987:CDS
ATAGTTGGATTTACCCCTGC+TGG 0.488873 1.3:-48993217 MS.gene23987:CDS
ATTCTTTCTCTTAGAAAATG+TGG 0.500833 1.3:+48993294 None:intergenic
ATCGGCCACAACTTGAAAAG+AGG 0.537552 1.3:+48993171 None:intergenic
AGGGAGAACCGAAAGCAAAT+GGG 0.546270 1.3:+48993191 None:intergenic
AAGCAAATGGGTTACCAGCA+GGG 0.566084 1.3:+48993203 None:intergenic
TGTTTCACGAAGGTGCTCAT+CGG 0.573884 1.3:+48993153 None:intergenic
AGCAAATGGGTTACCAGCAG+GGG 0.580138 1.3:+48993204 None:intergenic
TCGGCCACAACTTGAAAAGA+GGG 0.604417 1.3:+48993172 None:intergenic
TTGTTGAGAACAAAGATGCA+AGG 0.612227 1.3:-48993321 MS.gene23987:CDS
GACGAAAGAGCTGAAGAAGG+TGG 0.629958 1.3:-48993050 MS.gene23987:CDS
GAGCACCTTCGTGAAACACA+AGG 0.665525 1.3:-48993148 MS.gene23987:CDS
TGTGACGAAAGAGCTGAAGA+AGG 0.666095 1.3:-48993053 MS.gene23987:CDS
TTCGTTGGAAGAGCTTCGTG+CGG 0.675452 1.3:-48992954 MS.gene23987:CDS
ATTCACCTTGTGTTTCACGA+AGG 0.675664 1.3:+48993143 None:intergenic
AAGGTGGAGACAATTGACAA+AGG 0.699124 1.3:-48993034 MS.gene23987:CDS
AAACACAAGGTGAATCATCG+AGG 0.729840 1.3:-48993135 MS.gene23987:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATTTTCATTTTCTGA+AGG + chr1.3:48993156-48993175 None:intergenic 20.0%
! ATCAAAATCAAGATCATCAT+AGG + chr1.3:48993259-48993278 None:intergenic 25.0%
! ATTCTTTCTCTTAGAAAATG+TGG + chr1.3:48992962-48992981 None:intergenic 25.0%
!! TATGATGATCTTGATTTTGA+TGG - chr1.3:48993258-48993277 MS.gene23987:CDS 25.0%
!!! ACATTTTCTAAGAGAAAGAA+TGG - chr1.3:48992961-48992980 MS.gene23987:CDS 25.0%
!!! ATGATGATCTTGATTTTGAT+GGG - chr1.3:48993259-48993278 MS.gene23987:CDS 25.0%
ATTCTTTGTAATGCTAGAGT+TGG - chr1.3:48993012-48993031 MS.gene23987:CDS 30.0%
AGTACTCGACAAAGAACTTA+TGG - chr1.3:48993176-48993195 MS.gene23987:CDS 35.0%
GTACTCGACAAAGAACTTAT+GGG - chr1.3:48993177-48993196 MS.gene23987:CDS 35.0%
TAAAAAAGTGAAGGCTTCGT+TGG - chr1.3:48993284-48993303 MS.gene23987:CDS 35.0%
TCAAGATCATCATAGGCAAT+AGG + chr1.3:48993252-48993271 None:intergenic 35.0%
TTGTTGAGAACAAAGATGCA+AGG - chr1.3:48992932-48992951 MS.gene23987:CDS 35.0%
!! AATGCTAGAGTTGGTATAGT+TGG - chr1.3:48993021-48993040 MS.gene23987:CDS 35.0%
!! TGATGGGCTTAAAAAAGTGA+AGG - chr1.3:48993275-48993294 MS.gene23987:CDS 35.0%
AAACACAAGGTGAATCATCG+AGG - chr1.3:48993118-48993137 MS.gene23987:CDS 40.0%
AAGGTGGAGACAATTGACAA+AGG - chr1.3:48993219-48993238 MS.gene23987:CDS 40.0%
ATTCACCTTGTGTTTCACGA+AGG + chr1.3:48993113-48993132 None:intergenic 40.0%
!!! TTCTCCCTCTTTTCAAGTTG+TGG - chr1.3:48993077-48993096 MS.gene23987:CDS 40.0%
AGGGAGAACCGAAAGCAAAT+GGG + chr1.3:48993065-48993084 None:intergenic 45.0%
ATAGTTGGATTTACCCCTGC+TGG - chr1.3:48993036-48993055 MS.gene23987:CDS 45.0%
ATCGGCCACAACTTGAAAAG+AGG + chr1.3:48993085-48993104 None:intergenic 45.0%
GCTGGTAACCCATTTGCTTT+CGG - chr1.3:48993054-48993073 MS.gene23987:CDS 45.0%
TCGGCCACAACTTGAAAAGA+GGG + chr1.3:48993084-48993103 None:intergenic 45.0%
TGTGACGAAAGAGCTGAAGA+AGG - chr1.3:48993200-48993219 MS.gene23987:CDS 45.0%
!! AAAGCAAATGGGTTACCAGC+AGG + chr1.3:48993054-48993073 None:intergenic 45.0%
!! AAGCAAATGGGTTACCAGCA+GGG + chr1.3:48993053-48993072 None:intergenic 45.0%
!! TGTTTCACGAAGGTGCTCAT+CGG + chr1.3:48993103-48993122 None:intergenic 45.0%
GACGAAAGAGCTGAAGAAGG+TGG - chr1.3:48993203-48993222 MS.gene23987:CDS 50.0%
GAGCACCTTCGTGAAACACA+AGG - chr1.3:48993105-48993124 MS.gene23987:CDS 50.0%
GAGGGAGAACCGAAAGCAAA+TGG + chr1.3:48993066-48993085 None:intergenic 50.0%
TTCGTTGGAAGAGCTTCGTG+CGG - chr1.3:48993299-48993318 MS.gene23987:CDS 50.0%
!! AGCAAATGGGTTACCAGCAG+GGG + chr1.3:48993052-48993071 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 48992904 48993371 48992904 ID=MS.gene23987
chr1.3 mRNA 48992904 48993371 48992904 ID=MS.gene23987.t1;Parent=MS.gene23987
chr1.3 exon 48992904 48993371 48992904 ID=MS.gene23987.t1.exon1;Parent=MS.gene23987.t1
chr1.3 CDS 48992904 48993371 48992904 ID=cds.MS.gene23987.t1;Parent=MS.gene23987.t1
Gene Sequence

>MS.gene23987

ATGGGTCGTAAAAAAATAGCTATTGAATTTGTTGAGAACAAAGATGCAAGGTATGCCACATTTTCTAAGAGAAAGAATGGTCTTTTTAAGAAAGCAAATGAGTTGTTAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCTGCTGGTAACCCATTTGCTTTCGGTTCTCCCTCTTTTCAAGTTGTGGCCGATGAGCACCTTCGTGAAACACAAGGTGAATCATCGAGGCAAAATGTCGAGCCTTCAGAAAATGAAAATATCAAAGTACTCGACAAAGAACTTATGGGTGTGACGAAAGAGCTGAAGAAGGTGGAGACAATTGACAAAGGTAATCTGCCTATTGCCTATGATGATCTTGATTTTGATGGGCTTAAAAAAGTGAAGGCTTCGTTGGAAGAGCTTCGTGCGGATATTGATGCAGCATCAGCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA
Protein sequence

>MS.gene23987.t1

MGRKKIAIEFVENKDARYATFSKRKNGLFKKANELLILCNARVGIVGFTPAGNPFAFGSPSFQVVADEHLRETQGESSRQNVEPSENENIKVLDKELMGVTKELKKVETIDKGNLPIAYDDLDFDGLKKVKASLEELRADIDAASALLLLAKKPM