AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23998


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23998.t1 MTR_7g074790 72.472 178 31 1 1 178 1 160 1.68e-83 260
MS.gene23998.t1 MTR_7g074790 81.081 74 13 1 490 563 157 229 7.10e-34 129
MS.gene23998.t1 MTR_5g039760 61.165 206 55 2 1 205 1 182 2.89e-81 253
MS.gene23998.t1 MTR_7g061980 66.387 119 40 0 1 119 1 119 2.87e-52 174
MS.gene23998.t1 MTR_0558s0020 33.582 268 155 6 3 250 32 296 1.21e-39 146
MS.gene23998.t1 MTR_6g051425 31.900 279 178 5 9 277 13 289 3.37e-38 144
MS.gene23998.t1 MTR_8g446020 31.600 250 145 6 3 250 31 256 3.67e-31 122
MS.gene23998.t1 MTR_0402s0040 41.989 181 100 4 10 187 26 204 8.54e-31 126
MS.gene23998.t1 MTR_6g090505 33.624 229 136 5 45 257 10 238 1.60e-28 117
MS.gene23998.t1 MTR_4g102720 34.911 169 76 2 7 175 4 138 1.43e-26 108
MS.gene23998.t1 MTR_3g058090 51.327 113 34 1 367 479 15 106 3.14e-26 103
MS.gene23998.t1 MTR_1g083640 27.984 243 152 6 3 225 47 286 6.62e-25 105
MS.gene23998.t1 MTR_1g070355 27.039 233 163 3 15 243 79 308 5.09e-23 103
MS.gene23998.t1 MTR_4g069880 58.824 68 28 0 1 68 1 68 4.09e-21 87.8
MS.gene23998.t1 MTR_4g035820 23.057 386 273 10 10 383 75 448 2.75e-18 89.0
MS.gene23998.t1 MTR_1g019850 33.566 143 82 4 3 141 63 196 1.32e-17 82.8
MS.gene23998.t1 MTR_5g015480 42.636 129 67 4 4 129 53 177 6.26e-17 81.3
MS.gene23998.t1 MTR_5g076070 25.328 229 166 3 13 238 56 282 9.59e-17 81.3
MS.gene23998.t1 MTR_0337s0040 27.751 209 128 4 11 217 37 224 1.94e-16 79.3
MS.gene23998.t1 MTR_2g099430 48.837 86 42 2 35 119 28 112 2.19e-16 75.9
MS.gene23998.t1 MTR_7g113010 41.732 127 58 5 10 134 457 569 1.93e-15 79.7
MS.gene23998.t1 MTR_7g446510 29.651 172 121 0 87 258 158 329 4.46e-15 77.0
MS.gene23998.t1 MTR_4g117620 70.588 51 13 2 512 562 29 77 1.82e-14 68.9
MS.gene23998.t1 MTR_1g013060 27.962 211 139 4 7 208 21 227 1.99e-14 73.2
MS.gene23998.t1 MTR_7g446520 26.872 227 151 3 14 240 92 303 2.41e-14 74.7
MS.gene23998.t1 MTR_2g014100 25.837 209 132 6 3 191 40 245 2.78e-14 73.2
MS.gene23998.t1 MTR_7g446480 29.651 172 121 0 87 258 143 314 5.54e-14 73.6
MS.gene23998.t1 MTR_2g070590 41.346 104 57 3 10 110 17 119 5.88e-13 66.2
MS.gene23998.t1 MTR_6g017200 45.783 83 43 2 10 91 58 139 6.92e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23998.t1 AT4G38180 35.561 374 234 5 6 375 69 439 1.31e-67 234
MS.gene23998.t1 AT4G15090 32.134 389 246 7 3 388 44 417 8.95e-61 215
MS.gene23998.t1 AT4G15090 32.134 389 246 7 3 388 44 417 8.95e-61 215
MS.gene23998.t1 AT4G15090 32.134 389 246 7 3 388 44 417 8.95e-61 215
MS.gene23998.t1 AT4G15090 32.134 389 246 7 3 388 44 417 8.95e-61 215
MS.gene23998.t1 AT4G15090 32.134 389 246 7 3 388 44 417 8.95e-61 215
MS.gene23998.t1 AT1G76320 31.806 371 235 8 14 379 1 358 7.39e-48 177
MS.gene23998.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.52e-47 177
MS.gene23998.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.52e-47 177
MS.gene23998.t1 AT1G76320 31.806 371 235 8 14 379 1 358 1.68e-47 177
MS.gene23998.t1 AT3G22170 29.787 376 227 6 3 364 63 415 7.17e-47 176
MS.gene23998.t1 AT3G22170 29.787 376 227 6 3 364 63 415 7.17e-47 176
MS.gene23998.t1 AT2G27110 30.978 368 226 6 9 376 48 387 9.80e-44 167
MS.gene23998.t1 AT2G27110 30.978 368 226 6 9 376 48 387 9.80e-44 167
MS.gene23998.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.25e-43 166
MS.gene23998.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.95e-11 65.5
MS.gene23998.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.25e-43 166
MS.gene23998.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.95e-11 65.5
MS.gene23998.t1 AT3G06250 29.551 379 212 9 9 380 189 519 1.25e-43 166
MS.gene23998.t1 AT3G06250 38.462 104 48 3 9 110 27 116 7.95e-11 65.5
MS.gene23998.t1 AT5G18960 28.232 379 220 10 9 380 210 543 1.60e-37 148
MS.gene23998.t1 AT5G18960 39.423 104 47 3 9 110 42 131 1.70e-11 67.8
MS.gene23998.t1 AT5G18960 28.232 379 220 10 9 380 210 543 1.60e-37 148
MS.gene23998.t1 AT5G18960 39.423 104 47 3 9 110 42 131 1.70e-11 67.8
MS.gene23998.t1 AT2G27110 36.364 209 131 1 168 376 36 242 7.50e-36 143
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.07e-35 142
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.07e-35 142
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.11e-35 142
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 38 371 1.12e-35 142
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.16e-35 142
MS.gene23998.t1 AT4G19990 25.806 372 221 6 13 367 24 357 1.16e-35 142
MS.gene23998.t1 AT1G10240 27.174 368 254 7 10 367 48 411 1.45e-34 139
MS.gene23998.t1 AT1G10240 27.174 368 254 7 10 367 48 411 1.45e-34 139
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 4.02e-33 135
MS.gene23998.t1 AT1G52520 25.729 377 253 10 10 379 85 441 4.15e-33 134
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.40e-33 134
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.40e-33 134
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.98e-33 134
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.98e-33 134
MS.gene23998.t1 AT2G32250 26.536 358 217 6 11 366 39 352 6.98e-33 134
MS.gene23998.t1 AT1G80010 25.272 368 259 6 10 368 95 455 5.16e-32 131
MS.gene23998.t1 AT2G32250 26.197 355 216 6 14 366 1 311 6.35e-32 131
MS.gene23998.t1 AT2G32250 26.197 355 216 6 14 366 1 311 7.05e-32 131
MS.gene23998.t1 AT4G19990 25.595 336 196 5 48 367 3 300 1.20e-31 130
MS.gene23998.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.54e-30 126
MS.gene23998.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.54e-30 126
MS.gene23998.t1 AT5G28530 24.850 334 233 4 8 325 53 384 2.85e-30 126
MS.gene23998.t1 AT4G38170 32.000 175 114 2 190 363 24 194 2.23e-24 107
MS.gene23998.t1 AT5G28530 21.447 387 230 9 8 388 53 371 2.07e-17 86.3
MS.gene23998.t1 AT5G28530 21.447 387 230 9 8 388 53 371 2.20e-17 86.3

Find 91 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAATTCCATCATTTAAA+TGG 0.223041 1.3:-48903758 MS.gene23998:CDS
TGGAAGAGGCTGAACAATTT+TGG 0.228865 1.3:-48904517 MS.gene23998:CDS
ATTACACTTTCACGTCAAAA+TGG 0.279218 1.3:-48904311 MS.gene23998:CDS
TGGAATGAAATTTGATACTA+TGG 0.288067 1.3:-48904537 MS.gene23998:CDS
TGATGATGTTACAAATATTC+AGG 0.293363 1.3:-48902179 MS.gene23998:CDS
AACAAATTACAAACGTGTTC+TGG 0.334571 1.3:-48903941 MS.gene23998:CDS
ATGGCTGATGACTCTGGATT+AGG 0.348989 1.3:-48904170 MS.gene23998:CDS
AAATGATCGTACCTCTATAA+TGG 0.360454 1.3:+48903805 None:intergenic
GCATGTTTCTTGAATCCCTT+TGG 0.367868 1.3:+48902619 None:intergenic
GGAATTAAACATCTTGGAAA+TGG 0.370237 1.3:-48903591 MS.gene23998:CDS
TGACATCTTCAAATGTTGAT+TGG 0.374678 1.3:-48904571 MS.gene23998:CDS
CAGAATGGAATTAAACATCT+TGG 0.376869 1.3:-48903597 MS.gene23998:CDS
CTAGTTTGAGCATGTTTACT+TGG 0.384506 1.3:+48902529 None:intergenic
TGGCTGATGACTCTGGATTA+GGG 0.390441 1.3:-48904169 MS.gene23998:CDS
TCAAATTTCATTCCAAGTCT+TGG 0.395389 1.3:+48904545 None:intergenic
TTATGTCGCTTAGTTCCCTT+TGG 0.401911 1.3:+48902592 None:intergenic
CCCTAGACATTGCTTGACTT+TGG 0.402723 1.3:+48903676 None:intergenic
TCAAACAACCATTTAAATGA+TGG 0.407895 1.3:+48903750 None:intergenic
TGGTCAGTGAAGATCGTCTT+TGG 0.409022 1.3:+48903696 None:intergenic
TATACCTGTGAATTTCTTTG+AGG 0.409803 1.3:+48902496 None:intergenic
TATAAAATTAACAACTCAAA+TGG 0.424095 1.3:-48902396 MS.gene23998:CDS
CTTCTTAAAATATACTTCTC+AGG 0.433030 1.3:+48902910 None:intergenic
GTATTTCCAACAGCAATTGT+TGG 0.433256 1.3:-48904006 MS.gene23998:CDS
TGTCTAGAAATCGAATGTTC+AGG 0.434178 1.3:-48902816 MS.gene23998:CDS
ATCTTGCACAATGCCATAAC+GGG 0.434412 1.3:+48902873 None:intergenic
ATGTAGGTTTGTTTGTTGTA+AGG 0.436082 1.3:-48904417 MS.gene23998:CDS
ACAAGCAAATGAGATTGATA+TGG 0.437582 1.3:-48904189 MS.gene23998:CDS
TTAACAACTCAAATGGTTGA+TGG 0.439086 1.3:-48902389 MS.gene23998:CDS
CCGTTCTAGACTCGGCTCTC+CGG 0.443682 1.3:+48904348 None:intergenic
TCTGGTTTCAACCATTATAG+AGG 0.443875 1.3:-48903816 MS.gene23998:CDS
ATTGATATGGCTGATGACTC+TGG 0.443968 1.3:-48904176 MS.gene23998:CDS
ACCTGTGAATTTCTTTGAGG+TGG 0.445591 1.3:+48902499 None:intergenic
AAAGGAGGTTCTTTGCTAAG+AGG 0.453456 1.3:-48903561 MS.gene23998:CDS
CATAAACCATGGTGAGTCTC+AGG 0.455966 1.3:+48903636 None:intergenic
ATTCGATTTCTAGACAACTT+AGG 0.457251 1.3:+48902823 None:intergenic
ACATGTCCTCACGTGCTAGC+GGG 0.469336 1.3:+48902333 None:intergenic
CCTGTGAATTTCTTTGAGGT+GGG 0.471695 1.3:+48902500 None:intergenic
AATCTTGCACAATGCCATAA+CGG 0.484556 1.3:+48902872 None:intergenic
GTTTGAGCATGTTTACTTGG+AGG 0.485005 1.3:+48902532 None:intergenic
AGGTTTGTTTGTTGTAAGGA+AGG 0.486878 1.3:-48904413 MS.gene23998:CDS
TGTCGCTTAGTTCCCTTTGG+AGG 0.489630 1.3:+48902595 None:intergenic
TGGACAAGAGAAGCCCGTTA+TGG 0.496786 1.3:-48902886 MS.gene23998:CDS
GTTGATTGGAAGCCAAGACT+TGG 0.497681 1.3:-48904557 MS.gene23998:CDS
CTTGGAAATGGAATGAAGAA+AGG 0.500755 1.3:-48903579 MS.gene23998:CDS
CATGTCCTCACGTGCTAGCG+GGG 0.504056 1.3:+48902334 None:intergenic
CTGGTCATCCATGAGTTTGA+AGG 0.505313 1.3:-48904284 MS.gene23998:CDS
CTTCTTTCATGCATATCAGA+TGG 0.507819 1.3:-48903973 MS.gene23998:CDS
TGAGAAAGCTTGGTTTGACT+TGG 0.510934 1.3:-48903496 MS.gene23998:intron
TAGTTACACAACTATGATGA+TGG 0.512138 1.3:-48902306 MS.gene23998:intron
ACCAAAGTCAAGCAATGTCT+AGG 0.513361 1.3:-48903677 MS.gene23998:CDS
GATTCTCCAACAATTGCTGT+TGG 0.523496 1.3:+48904000 None:intergenic
GAAATTTGATACTATGGAAG+AGG 0.525500 1.3:-48904531 MS.gene23998:CDS
TTCACGTCAAAATGGAAAGC+TGG 0.527122 1.3:-48904303 MS.gene23998:CDS
TTCTGATGCTATACAACCAA+AGG 0.531212 1.3:-48902635 MS.gene23998:CDS
AGCATGGTGTATGGCGACGC+TGG 0.534307 1.3:-48904041 MS.gene23998:CDS
CAACTTATGAGCACACATGC+AGG 0.537532 1.3:-48904131 MS.gene23998:CDS
AAGAAACATGCTCCTCCAAA+GGG 0.539093 1.3:-48902607 MS.gene23998:CDS
TAAGCAATCCGTTCTAGACT+CGG 0.542410 1.3:+48904340 None:intergenic
CAAGAAACATGCTCCTCCAA+AGG 0.544628 1.3:-48902608 MS.gene23998:CDS
ACAAAAGCTATAGAAAATGA+TGG 0.546145 1.3:-48902679 MS.gene23998:CDS
CATCTGATATGCATGAAAGA+AGG 0.546601 1.3:+48903974 None:intergenic
CTGTGAATTTCTTTGAGGTG+GGG 0.560693 1.3:+48902501 None:intergenic
CTCACCATGGTTTATGCACA+TGG 0.561626 1.3:-48903629 MS.gene23998:CDS
AAGTGGTCTATTGGCATCGT+TGG 0.563557 1.3:+48903848 None:intergenic
CCGGAGAGCCGAGTCTAGAA+CGG 0.566334 1.3:-48904348 MS.gene23998:CDS
CGAAATGTTCAAGAAAGCAA+TGG 0.571716 1.3:-48902710 MS.gene23998:CDS
CCCACCTCAAAGAAATTCAC+AGG 0.578108 1.3:-48902500 MS.gene23998:intron
TTCTATGTGATCGAAGCATG+TGG 0.582014 1.3:+48904225 None:intergenic
GCAGGGCATAGAGCTAATGT+TGG 0.592621 1.3:-48904113 MS.gene23998:CDS
AACTTATGAGCACACATGCA+GGG 0.596381 1.3:-48904130 MS.gene23998:CDS
CCAAAGTCAAGCAATGTCTA+GGG 0.598556 1.3:-48903676 MS.gene23998:CDS
TCTGATGCTATACAACCAAA+GGG 0.598723 1.3:-48902634 MS.gene23998:CDS
TGTTTCTAAGTTCATTAGAG+CGG 0.599783 1.3:-48902788 MS.gene23998:CDS
GCATCAGAACTCACAAATGA+CGG 0.601171 1.3:+48902649 None:intergenic
ACGGCGATGTATCGTCATGT+AGG 0.604688 1.3:-48904433 MS.gene23998:CDS
AACATGTCCTCACGTGCTAG+CGG 0.607345 1.3:+48902332 None:intergenic
TGACTCTGGATTAGGGCAGA+AGG 0.608129 1.3:-48904162 MS.gene23998:CDS
TTTGTTGTAAGGAAGGACTA+CGG 0.614427 1.3:-48904406 MS.gene23998:CDS
GGCATCGTTGGTACAATATG+TGG 0.617702 1.3:+48903860 None:intergenic
ACATGGCACTTGTTGCAGAA+TGG 0.627403 1.3:-48903612 MS.gene23998:CDS
ATGTCCTCACGTGCTAGCGG+GGG 0.629467 1.3:+48902335 None:intergenic
GGAAATGGAATGAAGAAAGG+AGG 0.638695 1.3:-48903576 MS.gene23998:CDS
TGATATGCATGAAAGAAGGA+CGG 0.649185 1.3:+48903978 None:intergenic
CACTATTATCAAGAAGCATG+AGG 0.669252 1.3:+48902737 None:intergenic
TCTATGTGATCGAAGCATGT+GGG 0.671774 1.3:+48904226 None:intergenic
ATATTTGTAACATCATCAAG+AGG 0.673556 1.3:+48902184 None:intergenic
GGGCTCATAAGTTGGAGGCG+CGG 0.683549 1.3:+48902355 None:intergenic
TAATGTTGGATATACAGAAG+TGG 0.683641 1.3:-48904099 MS.gene23998:CDS
TTTACAAACAAGAACAAACA+CGG 0.696353 1.3:-48904452 MS.gene23998:CDS
GTGATGCCTGAGACTCACCA+TGG 0.716138 1.3:-48903642 MS.gene23998:CDS
AGTGCCATGTGCATAAACCA+TGG 0.773388 1.3:+48903625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAATTAATATCC+AGG + chr1.3:48904490-48904509 None:intergenic 10.0%
!!! TTATTTCTTATTATTAATGT+AGG - chr1.3:48904531-48904550 MS.gene23998:CDS 10.0%
!! ATAATCTTCACAATAATAAT+TGG - chr1.3:48903276-48903295 MS.gene23998:intron 15.0%
!! TATAAAATTAACAACTCAAA+TGG - chr1.3:48904344-48904363 MS.gene23998:CDS 15.0%
!! TTATGCCATTAAAAAAAAAT+GGG - chr1.3:48903310-48903329 MS.gene23998:intron 15.0%
!! TTTATGCCATTAAAAAAAAA+TGG - chr1.3:48903309-48903328 MS.gene23998:intron 15.0%
!!! TAGTTTTACATAATCATTTT+AGG - chr1.3:48904320-48904339 MS.gene23998:CDS 15.0%
!!! AATTTCATATCATTTTCATG+AGG - chr1.3:48904458-48904477 MS.gene23998:CDS 20.0%
! ACAAAAGCTATAGAAAATGA+TGG - chr1.3:48904061-48904080 MS.gene23998:CDS 25.0%
! AGACAATTCCATCATTTAAA+TGG - chr1.3:48902982-48903001 MS.gene23998:intron 25.0%
! ATATTTGTAACATCATCAAG+AGG + chr1.3:48904559-48904578 None:intergenic 25.0%
! CAAAATGTTTGAAGAATTGT+AGG + chr1.3:48903442-48903461 None:intergenic 25.0%
! CTTCTTAAAATATACTTCTC+AGG + chr1.3:48903833-48903852 None:intergenic 25.0%
! GAGAAAAAATATGCATATGA+AGG - chr1.3:48902363-48902382 MS.gene23998:CDS 25.0%
! GTTTGAATTGAATGATGTTA+AGG - chr1.3:48903802-48903821 MS.gene23998:CDS 25.0%
! TACAAAAAGAAAAAGAAGCA+TGG - chr1.3:48902683-48902702 MS.gene23998:CDS 25.0%
! TCAAACAACCATTTAAATGA+TGG + chr1.3:48902993-48903012 None:intergenic 25.0%
! TGGAATGAAATTTGATACTA+TGG - chr1.3:48902203-48902222 MS.gene23998:intron 25.0%
! TGTAAGATGTATGATACATT+TGG - chr1.3:48903752-48903771 MS.gene23998:CDS 25.0%
! TTTACAAACAAGAACAAACA+CGG - chr1.3:48902288-48902307 MS.gene23998:intron 25.0%
!! CAAAAATGATTTTGGATTAC+GGG - chr1.3:48902829-48902848 MS.gene23998:CDS 25.0%
!! GCAAAAATGATTTTGGATTA+CGG - chr1.3:48902828-48902847 MS.gene23998:CDS 25.0%
!! TGATGATGTTACAAATATTC+AGG - chr1.3:48904561-48904580 MS.gene23998:CDS 25.0%
!!! AGAAGTATATTTTAAGAAGG+TGG - chr1.3:48903834-48903853 MS.gene23998:CDS 25.0%
!!! CTGAGAAGTATATTTTAAGA+AGG - chr1.3:48903831-48903850 MS.gene23998:CDS 25.0%
AAAAAAAGCAAGTGGTCTAT+TGG + chr1.3:48902904-48902923 None:intergenic 30.0%
AAACCAGAAAAAAAAGCAAG+TGG + chr1.3:48902912-48902931 None:intergenic 30.0%
AAATGATCGTACCTCTATAA+TGG + chr1.3:48902938-48902957 None:intergenic 30.0%
AACAAATTACAAACGTGTTC+TGG - chr1.3:48902799-48902818 MS.gene23998:CDS 30.0%
AATACTAATCCAAATGGGAA+AGG - chr1.3:48903553-48903572 MS.gene23998:CDS 30.0%
AATTGTAGGATACCCAAATT+CGG + chr1.3:48903428-48903447 None:intergenic 30.0%
ACAAGCAAATGAGATTGATA+TGG - chr1.3:48902551-48902570 MS.gene23998:CDS 30.0%
ATCACTAAGGAAAATCATGA+AGG - chr1.3:48903680-48903699 MS.gene23998:CDS 30.0%
ATGCATATGAAGGAAAAATC+CGG - chr1.3:48902373-48902392 MS.gene23998:CDS 30.0%
ATTACACTTTCACGTCAAAA+TGG - chr1.3:48902429-48902448 MS.gene23998:intron 30.0%
CAGAATGGAATTAAACATCT+TGG - chr1.3:48903143-48903162 MS.gene23998:intron 30.0%
CATCTTACAACTACAAGTAA+TGG + chr1.3:48903741-48903760 None:intergenic 30.0%
GAAATTTGATACTATGGAAG+AGG - chr1.3:48902209-48902228 MS.gene23998:intron 30.0%
GGAATTAAACATCTTGGAAA+TGG - chr1.3:48903149-48903168 MS.gene23998:intron 30.0%
TAATGTTGGATATACAGAAG+TGG - chr1.3:48902641-48902660 MS.gene23998:CDS 30.0%
TAGTTACACAACTATGATGA+TGG - chr1.3:48904434-48904453 MS.gene23998:CDS 30.0%
TATACCTGTGAATTTCTTTG+AGG + chr1.3:48904247-48904266 None:intergenic 30.0%
TCAAATTTCATTCCAAGTCT+TGG + chr1.3:48902198-48902217 None:intergenic 30.0%
TCACCAATACTAATCCAAAT+GGG - chr1.3:48903548-48903567 MS.gene23998:CDS 30.0%
TGACATCTTCAAATGTTGAT+TGG - chr1.3:48902169-48902188 MS.gene23998:CDS 30.0%
TTAACAACTCAAATGGTTGA+TGG - chr1.3:48904351-48904370 MS.gene23998:CDS 30.0%
TTCACCAATACTAATCCAAA+TGG - chr1.3:48903547-48903566 MS.gene23998:CDS 30.0%
TTGTGAATATGTCATCACTA+AGG - chr1.3:48903667-48903686 MS.gene23998:CDS 30.0%
! ATTCGATTTCTAGACAACTT+AGG + chr1.3:48903920-48903939 None:intergenic 30.0%
! ATTTTGGATTACGGGTATTT+TGG - chr1.3:48902837-48902856 MS.gene23998:CDS 30.0%
! GTGTGATGCAAAAATGATTT+TGG - chr1.3:48902821-48902840 MS.gene23998:CDS 30.0%
! TATGTTTTCCTTCAAACTCA+TGG + chr1.3:48902467-48902486 None:intergenic 30.0%
! TGTTTCTAAGTTCATTAGAG+CGG - chr1.3:48903952-48903971 MS.gene23998:CDS 30.0%
!! ATGTAGGTTTGTTTGTTGTA+AGG - chr1.3:48902323-48902342 MS.gene23998:CDS 30.0%
!! TATAGAGGTACGATCATTTT+TGG - chr1.3:48902939-48902958 MS.gene23998:intron 30.0%
!! TTTCCCATTTGGATTAGTAT+TGG + chr1.3:48903554-48903573 None:intergenic 30.0%
!!! TGCAGCCCATTTTTTTTTAA+TGG + chr1.3:48903318-48903337 None:intergenic 30.0%
!!! TTTTGGTGATGTTGTTTCAT+TGG - chr1.3:48902854-48902873 MS.gene23998:CDS 30.0%
AATCTTGCACAATGCCATAA+CGG + chr1.3:48903871-48903890 None:intergenic 35.0%
AGGAAAATCATGAAGGATCT+TGG - chr1.3:48903687-48903706 MS.gene23998:CDS 35.0%
CATCTGATATGCATGAAAGA+AGG + chr1.3:48902769-48902788 None:intergenic 35.0%
CGAAATGTTCAAGAAAGCAA+TGG - chr1.3:48904030-48904049 MS.gene23998:CDS 35.0%
CTAGTTTGAGCATGTTTACT+TGG + chr1.3:48904214-48904233 None:intergenic 35.0%
CTTCTTTCATGCATATCAGA+TGG - chr1.3:48902767-48902786 MS.gene23998:CDS 35.0%
CTTGGAAATGGAATGAAGAA+AGG - chr1.3:48903161-48903180 MS.gene23998:intron 35.0%
GTATTTCCAACAGCAATTGT+TGG - chr1.3:48902734-48902753 MS.gene23998:CDS 35.0%
TCTGATGCTATACAACCAAA+GGG - chr1.3:48904106-48904125 MS.gene23998:CDS 35.0%
TGATATGCATGAAAGAAGGA+CGG + chr1.3:48902765-48902784 None:intergenic 35.0%
TGTCTAGAAATCGAATGTTC+AGG - chr1.3:48903924-48903943 MS.gene23998:CDS 35.0%
TTCTGATGCTATACAACCAA+AGG - chr1.3:48904105-48904124 MS.gene23998:CDS 35.0%
! AGAAAAAGAAGCATGGTGTA+TGG - chr1.3:48902690-48902709 MS.gene23998:CDS 35.0%
! AGTTTGTCTGAAACCGAATT+TGG - chr1.3:48903412-48903431 MS.gene23998:intron 35.0%
! ATGGCATTGTGCAAGATTTT+AGG - chr1.3:48903873-48903892 MS.gene23998:CDS 35.0%
! CACTATTATCAAGAAGCATG+AGG + chr1.3:48904006-48904025 None:intergenic 35.0%
! GTTTGTCTGAAACCGAATTT+GGG - chr1.3:48903413-48903432 MS.gene23998:intron 35.0%
! TCTGGTTTCAACCATTATAG+AGG - chr1.3:48902924-48902943 MS.gene23998:intron 35.0%
! TGGCATTGTGCAAGATTTTA+GGG - chr1.3:48903874-48903893 MS.gene23998:CDS 35.0%
! TTTGTTGTAAGGAAGGACTA+CGG - chr1.3:48902334-48902353 MS.gene23998:CDS 35.0%
!! AAGCAGATTTTGAGAAAGCT+TGG - chr1.3:48903234-48903253 MS.gene23998:intron 35.0%
!! AGGTTTGTTTGTTGTAAGGA+AGG - chr1.3:48902327-48902346 MS.gene23998:CDS 35.0%
!! TCTCTCGTTTTAGTAGATCA+TGG + chr1.3:48902491-48902510 None:intergenic 35.0%
!!! AGACCACTTGCTTTTTTTTC+TGG - chr1.3:48902906-48902925 MS.gene23998:CDS 35.0%
!!! GAACAATTTTGGCTTGCTTA+CGG - chr1.3:48902234-48902253 MS.gene23998:intron 35.0%
AAAGGAGGTTCTTTGCTAAG+AGG - chr1.3:48903179-48903198 MS.gene23998:intron 40.0%
AACTTATGAGCACACATGCA+GGG - chr1.3:48902610-48902629 MS.gene23998:CDS 40.0%
AAGAAACATGCTCCTCCAAA+GGG - chr1.3:48904133-48904152 MS.gene23998:CDS 40.0%
ACCAAAGTCAAGCAATGTCT+AGG - chr1.3:48903063-48903082 MS.gene23998:intron 40.0%
ATCTTGCACAATGCCATAAC+GGG + chr1.3:48903870-48903889 None:intergenic 40.0%
ATTGATATGGCTGATGACTC+TGG - chr1.3:48902564-48902583 MS.gene23998:CDS 40.0%
CCAAAGTCAAGCAATGTCTA+GGG - chr1.3:48903064-48903083 MS.gene23998:intron 40.0%
GAGTCAGATTCATGTCTAGT+TGG + chr1.3:48903644-48903663 None:intergenic 40.0%
GATTCTCCAACAATTGCTGT+TGG + chr1.3:48902743-48902762 None:intergenic 40.0%
GCATCAGAACTCACAAATGA+CGG + chr1.3:48904094-48904113 None:intergenic 40.0%
GCATGTTTCTTGAATCCCTT+TGG + chr1.3:48904124-48904143 None:intergenic 40.0%
GGAAATGGAATGAAGAAAGG+AGG - chr1.3:48903164-48903183 MS.gene23998:intron 40.0%
GTGTGTATACCTTTCCCATT+TGG + chr1.3:48903565-48903584 None:intergenic 40.0%
GTTTGAGCATGTTTACTTGG+AGG + chr1.3:48904211-48904230 None:intergenic 40.0%
TAACCTTGCAAGCTTATGTG+AGG + chr1.3:48903516-48903535 None:intergenic 40.0%
TCTATGTGATCGAAGCATGT+GGG + chr1.3:48902517-48902536 None:intergenic 40.0%
TTCACGTCAAAATGGAAAGC+TGG - chr1.3:48902437-48902456 MS.gene23998:intron 40.0%
TTCTATGTGATCGAAGCATG+TGG + chr1.3:48902518-48902537 None:intergenic 40.0%
! ACCTGTGAATTTCTTTGAGG+TGG + chr1.3:48904244-48904263 None:intergenic 40.0%
! ATGGGCTGCATGTTATATGA+AGG - chr1.3:48903328-48903347 MS.gene23998:intron 40.0%
! ATTTTCATGAGGAACTGTCC+TGG - chr1.3:48904469-48904488 MS.gene23998:CDS 40.0%
! GGCATTGTGCAAGATTTTAG+GGG - chr1.3:48903875-48903894 MS.gene23998:CDS 40.0%
! TAAGCAATCCGTTCTAGACT+CGG + chr1.3:48902403-48902422 None:intergenic 40.0%
! TGAGAAAGCTTGGTTTGACT+TGG - chr1.3:48903244-48903263 MS.gene23998:intron 40.0%
! TGGAAGAGGCTGAACAATTT+TGG - chr1.3:48902223-48902242 MS.gene23998:intron 40.0%
! TTATGTCGCTTAGTTCCCTT+TGG + chr1.3:48904151-48904170 None:intergenic 40.0%
!! ATGAAGGAAGCATTGACACT+TGG - chr1.3:48903344-48903363 MS.gene23998:intron 40.0%
!! CCTGTGAATTTCTTTGAGGT+GGG + chr1.3:48904243-48904262 None:intergenic 40.0%
!! CTGTGAATTTCTTTGAGGTG+GGG + chr1.3:48904242-48904261 None:intergenic 40.0%
!! TGTGCAAGATTTTAGGGGAA+AGG - chr1.3:48903880-48903899 MS.gene23998:CDS 40.0%
AAGTGGTCTATTGGCATCGT+TGG + chr1.3:48902895-48902914 None:intergenic 45.0%
AGTCCTCACATAAGCTTGCA+AGG - chr1.3:48903510-48903529 MS.gene23998:CDS 45.0%
AGTGCCATGTGCATAAACCA+TGG + chr1.3:48903118-48903137 None:intergenic 45.0%
ATGGCTGATGACTCTGGATT+AGG - chr1.3:48902570-48902589 MS.gene23998:CDS 45.0%
CAACTTATGAGCACACATGC+AGG - chr1.3:48902609-48902628 MS.gene23998:CDS 45.0%
CAAGAAACATGCTCCTCCAA+AGG - chr1.3:48904132-48904151 MS.gene23998:CDS 45.0%
CATAAACCATGGTGAGTCTC+AGG + chr1.3:48903107-48903126 None:intergenic 45.0%
CCCACCTCAAAGAAATTCAC+AGG - chr1.3:48904240-48904259 MS.gene23998:CDS 45.0%
CCCTAGACATTGCTTGACTT+TGG + chr1.3:48903067-48903086 None:intergenic 45.0%
CTCACCATGGTTTATGCACA+TGG - chr1.3:48903111-48903130 MS.gene23998:intron 45.0%
CTGGTCATCCATGAGTTTGA+AGG - chr1.3:48902456-48902475 MS.gene23998:intron 45.0%
GGCATCGTTGGTACAATATG+TGG + chr1.3:48902883-48902902 None:intergenic 45.0%
GTTGATTGGAAGCCAAGACT+TGG - chr1.3:48902183-48902202 MS.gene23998:CDS 45.0%
TGGCTGATGACTCTGGATTA+GGG - chr1.3:48902571-48902590 MS.gene23998:CDS 45.0%
TGGTCAGTGAAGATCGTCTT+TGG + chr1.3:48903047-48903066 None:intergenic 45.0%
! ACATGGCACTTGTTGCAGAA+TGG - chr1.3:48903128-48903147 MS.gene23998:intron 45.0%
! CTTGCTTACGGTTTTCGTGA+GGG - chr1.3:48902246-48902265 MS.gene23998:intron 45.0%
! TTTTCTTAGGCTGACGCTCA+AGG + chr1.3:48904180-48904199 None:intergenic 45.0%
!! GCAAGATTTTAGGGGAAAGG+AGG - chr1.3:48903883-48903902 MS.gene23998:CDS 45.0%
!!! GGAGGAGCACTTCTTTTCTT+AGG + chr1.3:48904193-48904212 None:intergenic 45.0%
AACATGTCCTCACGTGCTAG+CGG + chr1.3:48904411-48904430 None:intergenic 50.0%
ACGGCGATGTATCGTCATGT+AGG - chr1.3:48902307-48902326 MS.gene23998:CDS 50.0%
GCAGGGCATAGAGCTAATGT+TGG - chr1.3:48902627-48902646 MS.gene23998:CDS 50.0%
TGGACAAGAGAAGCCCGTTA+TGG - chr1.3:48903854-48903873 MS.gene23998:CDS 50.0%
! GCTTGCTTACGGTTTTCGTG+AGG - chr1.3:48902245-48902264 MS.gene23998:intron 50.0%
! TACGGTTTTCGTGAGGGCTT+CGG - chr1.3:48902252-48902271 MS.gene23998:intron 50.0%
! TGACTCTGGATTAGGGCAGA+AGG - chr1.3:48902578-48902597 MS.gene23998:CDS 50.0%
! TGTCGCTTAGTTCCCTTTGG+AGG + chr1.3:48904148-48904167 None:intergenic 50.0%
ACATGTCCTCACGTGCTAGC+GGG + chr1.3:48904410-48904429 None:intergenic 55.0%
GTGATGCCTGAGACTCACCA+TGG - chr1.3:48903098-48903117 MS.gene23998:intron 55.0%
AGCATGGTGTATGGCGACGC+TGG - chr1.3:48902699-48902718 MS.gene23998:CDS 60.0%
ATGTCCTCACGTGCTAGCGG+GGG + chr1.3:48904408-48904427 None:intergenic 60.0%
CATGTCCTCACGTGCTAGCG+GGG + chr1.3:48904409-48904428 None:intergenic 60.0%
CCGGAGAGCCGAGTCTAGAA+CGG - chr1.3:48902392-48902411 MS.gene23998:CDS 60.0%
GCTAGCGGGGGCTCATAAGT+TGG + chr1.3:48904396-48904415 None:intergenic 60.0%
! AGCGGGGGCTCATAAGTTGG+AGG + chr1.3:48904393-48904412 None:intergenic 60.0%
! CCGTTCTAGACTCGGCTCTC+CGG + chr1.3:48902395-48902414 None:intergenic 60.0%
! GGGCTCATAAGTTGGAGGCG+CGG + chr1.3:48904388-48904407 None:intergenic 60.0%
TGAGCCCCCGCTAGCACGTG+AGG - chr1.3:48904401-48904420 MS.gene23998:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 48902168 48904594 48902168 ID=MS.gene23998
chr1.3 mRNA 48902168 48904594 48902168 ID=MS.gene23998.t1;Parent=MS.gene23998
chr1.3 exon 48903497 48904594 48903497 ID=MS.gene23998.t1.exon1;Parent=MS.gene23998.t1
chr1.3 CDS 48903497 48904594 48903497 ID=cds.MS.gene23998.t1;Parent=MS.gene23998.t1
chr1.3 exon 48902501 48902938 48902501 ID=MS.gene23998.t1.exon2;Parent=MS.gene23998.t1
chr1.3 CDS 48902501 48902938 48902501 ID=cds.MS.gene23998.t1;Parent=MS.gene23998.t1
chr1.3 exon 48902307 48902420 48902307 ID=MS.gene23998.t1.exon3;Parent=MS.gene23998.t1
chr1.3 CDS 48902307 48902420 48902307 ID=cds.MS.gene23998.t1;Parent=MS.gene23998.t1
chr1.3 exon 48902168 48902209 48902168 ID=MS.gene23998.t1.exon4;Parent=MS.gene23998.t1
chr1.3 CDS 48902168 48902209 48902168 ID=cds.MS.gene23998.t1;Parent=MS.gene23998.t1
Gene Sequence

>MS.gene23998

ATGACATCTTCAAATGTTGATTGGAAGCCAAGACTTGGAATGAAATTTGATACTATGGAAGAGGCTGAACAATTTTGGCTTGCTTACGGTTTTCGTGAGGGCTTCGGAGTTAGAATACGTTTTACAAACAAGAACAAACACGGCGATGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGACTACGGAAGAAAGAGAAAAAATATGCATATGAAGGAAAAATCCGGAGAGCCGAGTCTAGAACGGATTGCTTAGCAAGAATTACACTTTCACGTCAAAATGGAAAGCTGGTCATCCATGAGTTTGAAGGAAAACATAACCATGATCTACTAAAACGAGAGACAACCCACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCAAATGAGATTGATATGGCTGATGACTCTGGATTAGGGCAGAAGGCAACTTATCAACTTATGAGCACACATGCAGGGCATAGAGCTAATGTTGGATATACAGAAGTGGATGTAAGAAACTACATCACTACAAAAAGAAAAAGAAGCATGGTGTATGGCGACGCTGGATATCTTTCACAGTATTTCCAACAGCAATTGTTGGAGAATCCGTCCTTCTTTCATGCATATCAGATGGATATAGATGAACAAATTACAAACGTGTTCTGGTGTGATGCAAAAATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTGGACACCACATATTGTACCAACGATGCCAATAGACCACTTGCTTTTTTTTCTGGTTTCAACCATTATAGAGGTACGATCATTTTTGGTGCAGCTCTAATGTATGATGAGACAATTCCATCATTTAAATGGTTGTTTGAAACATTCTTACAAGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAAGTCAAGCAATGTCTAGGGCAATTGAAGAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCACTTGTTGCAGAATGGAATTAAACATCTTGGAAATGGAATGAAGAAAGGAGGTTCTTTGCTAAGAGGTTTCAGTAAGTGCATGTATGATATTGACATTGAAGCAGATTTTGAGAAAGCTTGGTTTGACTTGGTAAATGAATATAATCTTCACAATAATAATTGGATCAAGTCAGTTTATGCCATTAAAAAAAAATGGGCTGCATGTTATATGAAGGAAGCATTGACACTTGGCATGCGAAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTCAAAGTTTGTCTGAAACCGAATTTGGGTATCCTACAATTCTTCAAACATTTTGAAAGAATTGTTGAAGAGAAGAGAGAAAAAGAATTGAGTTGTGATTATGAGTCCTCACATAAGCTTGCAAGGTTAATGTATGAAACTTCACCAATACTAATCCAAATGGGAAAGGTATACACACACACTGTATTTGAGTTGTTTCAATATGAGTTTCAGTTATTCTTAACTTTATCTGTACCAACTAGACATGAATCTGACTCTCTTTGTGAATATGTCATCACTAAGGAAAATCATGAAGGATCTTGGAGAGTATCATTTAATCGTGTTTCAACTTCCATTACTTGTAGTTGTAAGATGTATGATACATTTGGCATACTTTGTTCACATGCATTAAAAGTGTTTGAATTGAATGATGTTAAGGCAATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGAAGCCCGTTATGGCATTGTGCAAGATTTTAGGGGAAAGGAGGTTGAACAAGATCCTAAGTTGTCTAGAAATCGAATGTTCAGGCAAGTTGTTTCTAAGTTCATTAGAGCGGCAACTGTAGCATCGTATAGTGAAGATTGCCTCATGCTTCTTGATAATAGTGTAGACGAAATGTTCAAGAAAGCAATGGAATGTCGCACAAAAGCTATAGAAAATGATGGTGATCATCCGTCATTTGTGAGTTCTGATGCTATACAACCAAAGGGATTCAAGAAACATGCTCCTCCAAAGGGAACTAAGCGACATAAAAGTTTCCTTGAGCGTCAGCCTAAGAAAAGAAGTGCTCCTCCAAGTAAACATGCTCAAACTAGTCGCGCCCCACCTCAAAGAAATTCACAGGTATATAAGTCATTATGTAGATTACTTGTTTTAGTTTTACATGTACTTGCACTTATTTTAGTTTTACATAATCATTTTAGGTTATAAAATTAACAACTCAAATGGTTGATGGAGTATCTTGTTCCGCGCCTCCAACTTATGAGCCCCCGCTAGCACGTGAGGACATGTTTGTTAGTTACACAACTATGATGATGGTAATTTCATATCATTTTCATGAGGAACTGTCCTGGATATTAATTATTATTTTTATCACACAGTCATGATACTAATTATTTCTTATTATTAATGTAGGCACCTCTTGATGATGTTACAAATATTCAGGCATTACTTTGA

Protein sequence

>MS.gene23998.t1

MTSSNVDWKPRLGMKFDTMEEAEQFWLAYGFREGFGVRIRFTNKNKHGDVSSCRFVCCKEGLRKKEKKYAYEGKIRRAESRTDCLARITLSRQNGKLVIHEFEGKHNHDLLKRETTHMLRSHRKITEVQANEIDMADDSGLGQKATYQLMSTHAGHRANVGYTEVDVRNYITTKRKRSMVYGDAGYLSQYFQQQLLENPSFFHAYQMDIDEQITNVFWCDAKMILDYGYFGDVVSLDTTYCTNDANRPLAFFSGFNHYRGTIIFGAALMYDETIPSFKWLFETFLQAHNNKKPKTIFTDQSQAMSRAIEEVMPETHHGLCTWHLLQNGIKHLGNGMKKGGSLLRGFSKCMYDIDIEADFEKAWFDLAIPEKYILRRWTREARYGIVQDFRGKEVEQDPKLSRNRMFRQVVSKFIRAATVASYSEDCLMLLDNSVDEMFKKAMECRTKAIENDGDHPSFVSSDAIQPKGFKKHAPPKGTKRHKSFLERQPKKRSAPPSKHAQTSRAPPQRNSQVIKLTTQMVDGVSCSAPPTYEPPLAREDMFVSYTTMMMAPLDDVTNIQALL