AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24004

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24004.t1 MTR_8g042410 48.352 91 47 0 8 98 35 125 8.10e-22 89.0
MS.gene24004.t1 MTR_4g091490 43.333 90 50 1 10 98 12 101 1.22e-19 82.0
MS.gene24004.t1 MTR_7g076740 46.154 91 47 2 10 98 11 101 1.35e-19 81.3
MS.gene24004.t1 MTR_8g031360 45.652 92 48 2 9 98 11 102 4.33e-19 80.1
MS.gene24004.t1 MTR_3g052430 43.678 87 49 0 12 98 43 129 6.80e-19 80.5
MS.gene24004.t1 MTR_1g100653 46.667 90 47 1 10 98 11 100 9.67e-19 79.0
MS.gene24004.t1 MTR_3g461490 43.333 90 50 1 10 98 11 100 1.46e-18 79.0
MS.gene24004.t1 MTR_3g011610 43.678 87 49 0 12 98 39 125 1.87e-18 79.3
MS.gene24004.t1 MTR_1g043050 44.444 90 49 1 10 98 11 100 2.06e-18 77.4
MS.gene24004.t1 MTR_2g011660 42.222 90 51 1 10 98 12 101 3.58e-18 77.8
MS.gene24004.t1 MTR_1g043080 43.333 90 50 1 10 98 11 100 4.25e-18 76.6
MS.gene24004.t1 MTR_3g052450 41.379 87 51 0 12 98 42 128 8.86e-18 77.4
MS.gene24004.t1 MTR_1g076150 43.956 91 50 1 9 98 10 100 1.32e-17 75.5
MS.gene24004.t1 MTR_2g034790 41.758 91 52 1 9 98 10 100 1.39e-17 76.3
MS.gene24004.t1 MTR_2g089620 41.111 90 52 1 10 98 11 100 3.64e-17 75.1
MS.gene24004.t1 MTR_2g089420 43.678 87 49 0 12 98 13 99 4.66e-17 75.5
MS.gene24004.t1 MTR_2g064160 44.944 89 48 1 11 98 11 99 5.65e-17 74.3
MS.gene24004.t1 MTR_0140s0030 41.758 91 52 1 9 98 11 101 5.87e-17 74.7
MS.gene24004.t1 MTR_0489s0020 41.758 91 52 1 9 98 11 101 5.87e-17 74.7
MS.gene24004.t1 MTR_1g085040 43.678 87 49 0 12 98 14 100 6.93e-17 74.7
MS.gene24004.t1 MTR_4g057635 41.111 90 51 2 11 98 12 101 1.21e-16 73.6
MS.gene24004.t1 MTR_5g029840 40.659 91 53 1 9 98 10 100 1.25e-16 73.6
MS.gene24004.t1 MTR_2g067420 44.944 89 48 1 11 98 14 102 1.50e-16 73.6
MS.gene24004.t1 MTR_4g485530 47.126 87 46 0 12 98 14 100 1.57e-16 71.6
MS.gene24004.t1 MTR_1g017140 40.909 88 51 1 12 98 14 101 2.05e-16 73.2
MS.gene24004.t1 MTR_3g039990 39.560 91 54 1 9 98 11 101 3.13e-16 72.4
MS.gene24004.t1 MTR_8g020490 40.230 87 52 0 12 98 10 96 4.50e-16 71.2
MS.gene24004.t1 MTR_7g087130 39.560 91 54 1 9 98 10 100 4.55e-16 72.0
MS.gene24004.t1 MTR_5g014990 40.909 88 51 1 12 98 14 101 4.92e-16 71.6
MS.gene24004.t1 MTR_2g088170 43.333 90 50 1 10 98 28 117 4.96e-16 72.4
MS.gene24004.t1 MTR_0063s0090 41.111 90 52 1 10 98 11 100 5.89e-16 70.5
MS.gene24004.t1 MTR_7g111290 42.529 87 50 0 12 98 14 100 6.31e-16 72.0
MS.gene24004.t1 MTR_1g100667 41.379 87 51 0 12 98 15 101 6.63e-16 71.2
MS.gene24004.t1 MTR_1g085640 43.678 87 49 0 12 98 14 100 6.70e-16 72.0
MS.gene24004.t1 MTR_7g011170 40.659 91 53 1 9 98 10 100 7.77e-16 71.2
MS.gene24004.t1 MTR_2g099740 41.573 89 51 1 11 98 12 100 9.47e-16 71.6
MS.gene24004.t1 MTR_7g110830 42.529 87 50 0 12 98 14 100 9.81e-16 71.2
MS.gene24004.t1 MTR_6g012180 41.111 90 52 1 10 98 11 100 1.03e-15 70.9
MS.gene24004.t1 MTR_4g128670 40.909 88 51 1 12 98 14 101 1.18e-15 70.9
MS.gene24004.t1 MTR_6g055910 41.379 87 51 0 12 98 16 102 1.35e-15 70.5
MS.gene24004.t1 MTR_4g121460 39.560 91 54 1 9 98 10 100 1.62e-15 70.5
MS.gene24004.t1 MTR_2g095520 42.045 88 50 1 12 98 14 101 1.77e-15 70.5
MS.gene24004.t1 MTR_4g082290 41.758 91 52 1 9 98 10 100 1.78e-15 70.9
MS.gene24004.t1 MTR_3g103570 39.773 88 52 1 12 98 14 101 1.78e-15 70.5
MS.gene24004.t1 MTR_5g007370 38.889 90 54 1 10 98 11 100 1.85e-15 70.1
MS.gene24004.t1 MTR_4g100720 42.353 85 49 0 14 98 17 101 2.15e-15 68.2
MS.gene24004.t1 MTR_3g028740 43.182 88 48 2 12 98 24 110 2.49e-15 70.1
MS.gene24004.t1 MTR_6g012690 39.560 91 54 1 9 98 10 100 2.69e-15 70.1
MS.gene24004.t1 MTR_5g079670 43.678 87 49 0 12 98 13 99 3.14e-15 68.6
MS.gene24004.t1 MTR_3g077110 42.529 87 50 0 12 98 14 100 3.55e-15 69.7
MS.gene24004.t1 MTR_5g088610 38.636 88 53 1 12 98 11 98 3.81e-15 69.7
MS.gene24004.t1 MTR_8g017440 41.573 89 51 1 11 98 12 100 4.06e-15 69.3
MS.gene24004.t1 MTR_1g110460 40.476 84 50 0 15 98 31 114 4.10e-15 69.3
MS.gene24004.t1 MTR_1g021230 39.080 87 53 0 12 98 59 145 4.11e-15 69.7
MS.gene24004.t1 MTR_2g097910 41.379 87 51 0 12 98 22 108 4.48e-15 69.3
MS.gene24004.t1 MTR_3g083540 40.659 91 53 1 9 98 39 129 4.57e-15 68.9
MS.gene24004.t1 MTR_8g017540 41.573 89 51 1 11 98 58 146 4.69e-15 69.7
MS.gene24004.t1 MTR_0008s0390 43.678 87 49 0 12 98 15 101 5.01e-15 68.6
MS.gene24004.t1 MTR_4g097570 40.000 90 52 2 11 98 12 101 5.25e-15 68.9
MS.gene24004.t1 MTR_6g090405 38.889 90 53 2 11 98 12 101 5.46e-15 68.6
MS.gene24004.t1 MTR_4g125520 41.111 90 52 1 10 98 11 100 6.42e-15 68.6
MS.gene24004.t1 MTR_4g105130 41.379 87 51 0 12 98 14 100 6.46e-15 68.9
MS.gene24004.t1 MTR_0251s0050 43.678 87 49 0 12 98 15 101 6.82e-15 68.2
MS.gene24004.t1 MTR_7g035075 40.230 87 52 0 12 98 16 102 7.18e-15 67.4
MS.gene24004.t1 MTR_7g010210 38.889 90 54 1 10 98 11 100 7.21e-15 68.6
MS.gene24004.t1 MTR_4g065017 40.230 87 52 0 12 98 19 105 9.21e-15 68.6
MS.gene24004.t1 MTR_8g095390 40.230 87 52 0 12 98 14 100 9.31e-15 68.2
MS.gene24004.t1 MTR_7g115650 38.462 91 55 1 9 98 10 100 9.49e-15 67.0
MS.gene24004.t1 MTR_4g105660 34.021 97 63 1 2 98 170 265 9.51e-15 68.6
MS.gene24004.t1 MTR_4g478180 41.111 90 52 1 10 98 12 101 1.02e-14 68.6
MS.gene24004.t1 MTR_1g045610 42.529 87 50 0 12 98 23 109 1.07e-14 67.8
MS.gene24004.t1 MTR_7g010210 38.889 90 54 1 10 98 11 100 1.24e-14 67.8
MS.gene24004.t1 MTR_4g102380 42.857 91 51 1 9 98 10 100 1.30e-14 67.4
MS.gene24004.t1 MTR_1g062940 41.379 87 51 0 12 98 8 94 1.40e-14 66.6
MS.gene24004.t1 MTR_1g112760 42.529 87 50 0 12 98 15 101 1.52e-14 67.0
MS.gene24004.t1 MTR_0008s0280 41.379 87 51 0 12 98 14 100 1.62e-14 66.6
MS.gene24004.t1 MTR_0247s0040 40.909 88 52 0 12 99 9 96 1.68e-14 65.9
MS.gene24004.t1 MTR_5g042030 38.710 93 56 1 7 98 3 95 1.72e-14 67.4
MS.gene24004.t1 MTR_3g074520 38.889 90 54 1 10 98 11 100 1.74e-14 67.8
MS.gene24004.t1 MTR_0008s0470 38.710 93 56 1 7 98 9 101 1.80e-14 67.4
MS.gene24004.t1 MTR_6g006030 40.230 87 52 0 12 98 16 102 1.92e-14 66.2
MS.gene24004.t1 MTR_2g089450 42.529 87 50 0 12 98 14 100 1.96e-14 67.0
MS.gene24004.t1 MTR_4g073420 42.529 87 50 0 12 98 14 100 2.05e-14 67.0
MS.gene24004.t1 MTR_8g017390 42.353 85 48 1 15 98 17 101 2.42e-14 67.8
MS.gene24004.t1 MTR_7g096930 39.560 91 54 1 9 98 10 100 2.48e-14 67.0
MS.gene24004.t1 MTR_8g017340 41.176 85 49 1 15 98 17 101 2.53e-14 67.4
MS.gene24004.t1 MTR_1g086510 37.778 90 55 1 10 98 20 109 2.68e-14 66.6
MS.gene24004.t1 MTR_8g027345 42.529 87 50 0 12 98 14 100 3.45e-14 66.6
MS.gene24004.t1 MTR_2g096380 42.529 87 50 0 12 98 8 94 4.37e-14 65.9
MS.gene24004.t1 MTR_7g102110 40.909 88 51 1 12 98 14 101 4.48e-14 66.2
MS.gene24004.t1 MTR_3g077650 36.364 88 55 1 11 98 180 266 4.54e-14 66.6
MS.gene24004.t1 MTR_1g086530 37.113 97 60 1 3 98 25 121 5.05e-14 65.9
MS.gene24004.t1 MTR_7g017260 37.113 97 58 2 8 101 22 118 5.35e-14 65.9
MS.gene24004.t1 MTR_7g117730 38.462 91 55 1 9 98 10 100 5.65e-14 65.9
MS.gene24004.t1 MTR_8g060940 40.909 88 52 0 12 99 9 96 6.14e-14 65.5
MS.gene24004.t1 MTR_7g450950 35.227 88 56 1 11 98 156 242 6.22e-14 66.2
MS.gene24004.t1 MTR_0193s0090 40.909 88 52 0 12 99 9 96 7.74e-14 64.7
MS.gene24004.t1 MTR_1g073170 41.379 87 51 0 12 98 22 108 7.84e-14 65.5
MS.gene24004.t1 MTR_3g065440 40.659 91 53 1 9 98 10 100 9.19e-14 65.5
MS.gene24004.t1 MTR_8g017350 40.000 85 50 1 15 98 17 101 1.15e-13 65.9
MS.gene24004.t1 MTR_4g063100 40.000 90 54 0 9 98 6 95 1.26e-13 64.7
MS.gene24004.t1 MTR_5g079120 38.636 88 54 0 12 99 63 150 1.30e-13 65.1
MS.gene24004.t1 MTR_5g078140 40.659 91 53 1 9 98 10 100 1.33e-13 65.1
MS.gene24004.t1 MTR_6g009430 40.449 89 52 1 11 98 12 100 1.39e-13 65.1
MS.gene24004.t1 MTR_3g101290 36.364 88 55 1 11 98 36 122 1.57e-13 63.9
MS.gene24004.t1 MTR_5g010020 38.202 89 54 1 11 98 12 100 1.60e-13 65.1
MS.gene24004.t1 MTR_3g097450 41.379 87 51 0 12 98 14 100 1.75e-13 64.7
MS.gene24004.t1 MTR_8g017500 39.326 89 53 1 11 98 12 100 1.80e-13 65.1
MS.gene24004.t1 MTR_5g078800 39.773 88 53 0 12 99 9 96 1.82e-13 64.3
MS.gene24004.t1 MTR_4g097570 39.560 91 52 3 11 98 12 102 1.83e-13 64.7
MS.gene24004.t1 MTR_0001s0360 39.773 88 53 0 12 99 9 96 1.90e-13 64.3
MS.gene24004.t1 MTR_7g061550 33.333 90 58 1 12 99 7 96 2.26e-13 64.7
MS.gene24004.t1 MTR_5g078950 40.659 91 53 1 10 99 6 96 2.32e-13 63.9
MS.gene24004.t1 MTR_0197s0010 41.860 86 50 0 14 99 5 90 2.32e-13 63.5
MS.gene24004.t1 MTR_5g070020 39.326 89 51 2 11 98 121 207 2.35e-13 64.7
MS.gene24004.t1 MTR_5g010650 37.500 88 54 1 11 98 109 195 2.45e-13 64.7
MS.gene24004.t1 MTR_8g098860 38.202 89 54 1 11 98 12 100 2.48e-13 64.3
MS.gene24004.t1 MTR_4g082230 40.230 87 52 0 12 98 14 100 2.76e-13 64.7
MS.gene24004.t1 MTR_5g078860 39.773 88 53 0 12 99 9 96 2.86e-13 64.3
MS.gene24004.t1 MTR_5g078910 39.773 88 53 0 12 99 9 96 2.92e-13 64.3
MS.gene24004.t1 MTR_5g488170 35.227 88 56 1 12 98 14 101 3.19e-13 63.5
MS.gene24004.t1 MTR_6g015455 35.227 88 56 1 11 98 4 90 3.60e-13 64.3
MS.gene24004.t1 MTR_5g079220 34.000 100 65 1 1 99 11 110 3.76e-13 63.5
MS.gene24004.t1 MTR_1g083630 39.080 87 53 0 12 98 14 100 4.45e-13 63.9
MS.gene24004.t1 MTR_5g088080 35.227 88 56 1 12 98 14 101 4.72e-13 63.2
MS.gene24004.t1 MTR_5g088150 35.227 88 56 1 12 98 14 101 4.72e-13 63.2
MS.gene24004.t1 MTR_5g488210 35.227 88 56 1 12 98 14 101 4.72e-13 63.2
MS.gene24004.t1 MTR_5g062790 36.364 88 55 1 12 98 11 98 4.78e-13 63.5
MS.gene24004.t1 MTR_7g111290 52.632 57 27 0 42 98 2 58 4.81e-13 63.5
MS.gene24004.t1 MTR_5g079290 38.636 88 54 0 12 99 19 106 5.31e-13 63.2
MS.gene24004.t1 MTR_7g035350 39.326 89 51 2 11 98 224 310 5.61e-13 63.5
MS.gene24004.t1 MTR_3g463400 38.202 89 52 2 11 98 132 218 6.19e-13 63.5
MS.gene24004.t1 MTR_5g088640 35.227 88 56 1 12 98 14 101 6.32e-13 63.2
MS.gene24004.t1 MTR_5g078930 37.500 88 55 0 12 99 11 98 1.19e-12 61.6
MS.gene24004.t1 MTR_5g049190 37.363 91 56 1 11 101 18 107 1.24e-12 62.0
MS.gene24004.t1 MTR_4g019370 34.091 88 57 1 11 98 37 123 1.62e-12 62.4
MS.gene24004.t1 MTR_5g082910 32.955 88 58 1 11 98 18 104 2.65e-12 61.2
MS.gene24004.t1 MTR_7g109320 41.758 91 52 1 9 98 10 100 3.63e-12 61.2
MS.gene24004.t1 MTR_5g038910 33.333 84 55 1 15 98 29 111 8.61e-12 60.5
MS.gene24004.t1 MTR_6g055910 50.909 55 27 0 44 98 19 73 8.64e-12 59.7
MS.gene24004.t1 MTR_8g468380 33.333 84 55 1 15 98 25 107 1.11e-11 60.1
MS.gene24004.t1 MTR_5g038910 33.333 84 55 1 15 98 29 111 1.59e-11 59.7
MS.gene24004.t1 MTR_8g006470 37.500 88 54 1 12 98 12 99 1.68e-11 59.3
MS.gene24004.t1 MTR_7g451170 34.783 92 51 2 11 98 190 276 2.21e-11 59.3
MS.gene24004.t1 MTR_5g016510 34.091 88 57 1 11 98 4 90 3.33e-11 58.5
MS.gene24004.t1 MTR_3g110028 26.812 138 50 2 12 98 33 170 6.27e-11 57.8
MS.gene24004.t1 MTR_7g061330 34.091 88 57 1 11 98 112 198 6.40e-11 57.8
MS.gene24004.t1 MTR_7g461410 34.091 88 57 1 11 98 112 198 6.40e-11 57.8
MS.gene24004.t1 MTR_1g017000 36.667 90 55 2 11 98 12 101 7.01e-11 57.4
MS.gene24004.t1 MTR_1g026870 30.682 88 60 1 11 98 84 170 7.44e-11 57.8
MS.gene24004.t1 MTR_2g033170 38.095 84 52 0 15 98 29 112 7.79e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24004.t1 AT5G55020 44.828 87 48 0 12 98 28 114 3.30e-20 84.3
MS.gene24004.t1 AT3G11440 44.828 87 48 0 12 98 43 129 3.69e-20 84.0
MS.gene24004.t1 AT3G11440 44.828 87 48 0 12 98 43 129 7.63e-20 83.2
MS.gene24004.t1 AT3G11440 44.828 87 48 0 12 98 43 129 7.63e-20 83.2
MS.gene24004.t1 AT3G11440 44.828 87 48 0 12 98 43 129 7.63e-20 83.2
MS.gene24004.t1 AT3G61250 45.055 91 49 1 9 98 10 100 1.25e-19 81.6
MS.gene24004.t1 AT5G56110 44.944 89 48 1 11 98 12 100 5.33e-19 80.1
MS.gene24004.t1 AT5G06100 44.828 87 48 0 12 98 34 120 8.00e-19 80.5
MS.gene24004.t1 AT5G06100 44.828 87 48 0 12 98 34 120 1.02e-18 80.1
MS.gene24004.t1 AT5G06100 44.828 87 48 0 12 98 34 120 1.02e-18 80.1
MS.gene24004.t1 AT5G06100 44.828 87 48 0 12 98 34 120 1.02e-18 80.1
MS.gene24004.t1 AT5G06100 44.828 87 48 0 12 98 34 120 1.02e-18 80.1
MS.gene24004.t1 AT2G26960 43.678 87 49 0 12 98 22 108 1.33e-18 79.7
MS.gene24004.t1 AT2G32460 42.222 90 51 1 10 98 5 94 1.35e-18 79.7
MS.gene24004.t1 AT2G32460 42.222 90 51 1 10 98 17 106 1.43e-18 79.7
MS.gene24004.t1 AT4G21440 42.222 90 51 1 10 98 11 100 3.95e-18 77.8
MS.gene24004.t1 AT2G47460 42.857 91 51 1 9 98 10 100 2.47e-17 75.9
MS.gene24004.t1 AT1G22640 45.977 87 47 0 12 98 14 100 4.17e-17 74.3
MS.gene24004.t1 AT4G26930 41.379 87 51 0 12 98 21 107 4.35e-17 75.1
MS.gene24004.t1 AT5G26660 43.678 87 49 0 12 98 14 100 6.06e-17 74.7
MS.gene24004.t1 AT3G46130 45.977 87 47 0 12 98 11 97 9.21e-17 73.2
MS.gene24004.t1 AT5G59780 45.977 87 47 0 12 98 10 96 9.46e-17 72.8
MS.gene24004.t1 AT3G47600 39.560 91 54 1 9 98 10 100 1.13e-16 73.9
MS.gene24004.t1 AT5G15310 41.758 91 52 1 9 98 10 100 1.30e-16 73.6
MS.gene24004.t1 AT4G17785 40.000 90 53 1 10 98 12 101 1.34e-16 73.6
MS.gene24004.t1 AT4G01680 43.678 87 49 0 12 98 14 100 1.76e-16 73.2
MS.gene24004.t1 AT4G17785 40.000 90 53 1 10 98 12 101 1.93e-16 73.2
MS.gene24004.t1 AT5G10280 41.111 90 52 1 10 98 11 100 2.02e-16 73.2
MS.gene24004.t1 AT1G18570 40.659 91 53 1 9 98 11 101 2.10e-16 73.2
MS.gene24004.t1 AT5G15310 41.758 91 52 1 9 98 10 100 2.76e-16 71.6
MS.gene24004.t1 AT5G35550 42.353 85 49 0 14 98 18 102 2.77e-16 72.0
MS.gene24004.t1 AT1G16490 43.820 89 49 1 11 98 14 102 2.89e-16 72.0
MS.gene24004.t1 AT3G13540 41.758 91 52 1 9 98 21 111 3.21e-16 71.6
MS.gene24004.t1 AT3G13890 41.573 89 51 1 11 98 12 100 3.25e-16 72.8
MS.gene24004.t1 AT4G01680 43.678 87 49 0 12 98 14 100 3.68e-16 71.2
MS.gene24004.t1 AT5G49330 41.758 91 52 1 9 98 10 100 3.91e-16 72.4
MS.gene24004.t1 AT5G62470 39.560 91 54 1 9 98 10 100 4.02e-16 72.4
MS.gene24004.t1 AT5G52600 41.573 89 51 1 11 98 12 100 4.97e-16 70.5
MS.gene24004.t1 AT1G74080 38.710 93 56 1 7 98 8 100 5.29e-16 72.0
MS.gene24004.t1 AT5G14750 41.379 87 51 0 12 98 18 104 5.83e-16 70.1
MS.gene24004.t1 AT4G05100 40.000 90 53 1 10 98 12 101 5.95e-16 71.6
MS.gene24004.t1 AT5G15310 41.758 91 52 1 9 98 10 100 6.14e-16 71.6
MS.gene24004.t1 AT3G23250 41.758 91 52 1 9 98 10 100 7.03e-16 71.2
MS.gene24004.t1 AT1G25340 40.230 87 52 0 12 98 20 106 7.73e-16 71.2
MS.gene24004.t1 AT2G31180 41.758 91 52 1 9 98 10 100 7.85e-16 70.5
MS.gene24004.t1 AT3G01140 42.222 90 51 1 10 98 54 143 7.90e-16 71.6
MS.gene24004.t1 AT4G37780 40.909 88 51 1 12 98 14 101 7.98e-16 71.2
MS.gene24004.t1 AT4G34990 43.678 87 49 0 12 98 14 100 8.70e-16 70.9
MS.gene24004.t1 AT3G27920 41.667 84 49 0 15 98 19 102 9.52e-16 70.1
MS.gene24004.t1 AT3G01140 42.222 90 51 1 10 98 11 100 1.06e-15 71.2
MS.gene24004.t1 AT1G74430 43.678 87 49 0 12 98 14 100 1.15e-15 70.5
MS.gene24004.t1 AT3G48920 41.379 87 51 0 12 98 20 106 1.16e-15 70.5
MS.gene24004.t1 AT3G12820 42.697 89 50 1 11 98 14 102 1.21e-15 70.1
MS.gene24004.t1 AT4G22680 42.857 91 51 1 9 98 10 100 1.43e-15 70.1
MS.gene24004.t1 AT1G08810 39.560 91 54 1 9 98 10 100 1.52e-15 70.1
MS.gene24004.t1 AT3G62610 39.560 91 54 1 9 98 10 100 1.53e-15 70.9
MS.gene24004.t1 AT5G12870 42.529 87 50 0 12 98 20 106 1.85e-15 70.1
MS.gene24004.t1 AT5G16770 40.000 90 53 1 10 98 11 100 1.96e-15 70.5
MS.gene24004.t1 AT5G16770 40.000 90 53 1 10 98 11 100 1.96e-15 70.5
MS.gene24004.t1 AT1G57560 41.379 87 51 0 12 98 14 100 2.13e-15 69.7
MS.gene24004.t1 AT1G74650 40.230 87 52 0 12 98 14 100 2.17e-15 70.1
MS.gene24004.t1 AT3G28910 40.000 90 53 1 10 98 11 100 2.21e-15 70.1
MS.gene24004.t1 AT5G40330 40.230 87 52 0 12 98 14 100 2.46e-15 68.9
MS.gene24004.t1 AT5G16770 40.000 90 53 1 10 98 11 100 2.93e-15 70.1
MS.gene24004.t1 AT5G16770 40.000 90 53 1 10 98 11 100 2.93e-15 70.1
MS.gene24004.t1 AT5G62470 39.560 91 53 2 9 98 10 99 3.01e-15 70.1
MS.gene24004.t1 AT1G57560 41.667 84 49 0 15 98 17 100 3.57e-15 69.7
MS.gene24004.t1 AT5G65230 41.111 90 52 1 10 98 11 100 3.66e-15 69.3
MS.gene24004.t1 AT3G27785 41.304 92 51 2 11 101 188 277 3.88e-15 69.7
MS.gene24004.t1 AT4G28110 38.889 90 54 1 10 98 11 100 4.10e-15 68.9
MS.gene24004.t1 AT1G56160 42.697 89 50 1 11 98 14 102 4.11e-15 69.3
MS.gene24004.t1 AT1G09540 42.529 87 50 0 12 98 14 100 4.36e-15 69.7
MS.gene24004.t1 AT3G01530 40.476 84 50 0 15 98 30 113 4.79e-15 67.8
MS.gene24004.t1 AT3G24310 42.529 87 50 0 12 98 20 106 4.80e-15 68.9
MS.gene24004.t1 AT5G65790 39.773 88 52 1 12 98 14 101 4.93e-15 69.3
MS.gene24004.t1 AT1G79180 42.697 89 50 1 11 98 14 102 4.96e-15 68.9
MS.gene24004.t1 AT4G25560 41.667 84 49 0 15 98 15 98 5.85e-15 68.6
MS.gene24004.t1 AT5G61420 36.667 90 56 1 10 98 11 100 5.93e-15 69.3
MS.gene24004.t1 AT5G07690 36.667 90 56 1 10 98 11 100 7.06e-15 68.9
MS.gene24004.t1 AT3G49690 40.909 88 51 1 12 98 14 101 7.36e-15 68.6
MS.gene24004.t1 AT1G34670 40.000 90 53 1 10 98 11 100 9.13e-15 68.6
MS.gene24004.t1 AT5G23000 40.000 90 52 2 11 98 12 101 9.13e-15 68.6
MS.gene24004.t1 AT2G16720 42.529 87 50 0 12 98 14 100 9.94e-15 67.8
MS.gene24004.t1 AT5G54230 40.230 87 52 0 12 98 14 100 1.04e-14 68.2
MS.gene24004.t1 AT3G02940 41.111 90 52 1 10 98 11 100 1.14e-14 68.2
MS.gene24004.t1 AT3G27810 39.080 87 53 0 12 98 22 108 1.32e-14 67.0
MS.gene24004.t1 AT3G02940 41.111 90 52 1 10 98 11 100 1.38e-14 68.2
MS.gene24004.t1 AT3G02940 41.111 90 52 1 10 98 11 100 1.38e-14 68.2
MS.gene24004.t1 AT1G35515 41.379 87 51 0 12 98 14 100 1.44e-14 66.6
MS.gene24004.t1 AT3G30210 41.379 87 51 0 12 98 29 115 1.45e-14 67.4
MS.gene24004.t1 AT5G07700 36.667 90 56 1 10 98 11 100 1.57e-14 67.8
MS.gene24004.t1 AT5G07700 36.667 90 56 1 10 98 11 100 1.57e-14 67.8
MS.gene24004.t1 AT5G52260 44.048 84 47 0 15 98 17 100 1.61e-14 67.4
MS.gene24004.t1 AT5G26660 58.182 55 23 0 44 98 15 69 1.75e-14 67.8
MS.gene24004.t1 AT2G26950 35.632 87 56 0 12 98 18 104 2.12e-14 67.8
MS.gene24004.t1 AT1G06180 39.560 91 54 1 9 98 10 100 2.20e-14 66.6
MS.gene24004.t1 AT3G12720 39.326 89 53 1 11 98 22 110 2.30e-14 67.4
MS.gene24004.t1 AT4G09460 41.379 87 51 0 12 98 14 100 2.34e-14 66.6
MS.gene24004.t1 AT3G28470 40.230 87 52 0 12 98 14 100 2.34e-14 67.4
MS.gene24004.t1 AT2G47190 39.080 87 53 0 12 98 22 108 2.39e-14 67.0
MS.gene24004.t1 AT4G38620 42.529 87 50 0 12 98 14 100 2.42e-14 67.0
MS.gene24004.t1 AT1G68320 39.286 84 51 0 15 98 24 107 2.55e-14 67.0
MS.gene24004.t1 AT4G13480 41.379 87 51 0 12 98 8 94 2.71e-14 66.6
MS.gene24004.t1 AT4G12350 41.304 92 54 0 7 98 9 100 3.67e-14 66.6
MS.gene24004.t1 AT1G18710 38.043 92 56 1 8 98 9 100 4.14e-14 66.2
MS.gene24004.t1 AT3G08500 41.379 87 51 0 12 98 32 118 4.46e-14 66.6
MS.gene24004.t1 AT5G40350 39.080 87 53 0 12 98 19 105 4.98e-14 65.5
MS.gene24004.t1 AT5G14340 40.659 91 53 1 9 98 22 112 6.27e-14 65.9
MS.gene24004.t1 AT4G01680 40.404 99 47 2 12 98 14 112 6.67e-14 66.2
MS.gene24004.t1 AT5G16600 41.758 91 52 1 9 98 10 100 1.03e-13 65.5
MS.gene24004.t1 AT5G58850 35.227 88 56 1 11 98 104 190 1.14e-13 65.9
MS.gene24004.t1 AT1G66230 39.560 91 54 1 9 98 10 100 1.19e-13 65.1
MS.gene24004.t1 AT5G40360 39.560 91 46 2 12 98 158 243 1.40e-13 65.5
MS.gene24004.t1 AT3G13890 37.755 98 51 2 11 98 12 109 1.53e-13 65.1
MS.gene24004.t1 AT1G63910 38.202 89 54 1 11 98 12 100 1.91e-13 65.1
MS.gene24004.t1 AT5G11510 35.870 92 50 2 11 98 80 166 2.25e-13 65.1
MS.gene24004.t1 AT5G11510 35.870 92 50 2 11 98 80 166 2.25e-13 65.1
MS.gene24004.t1 AT5G11510 35.870 92 50 2 11 98 80 166 2.25e-13 65.1
MS.gene24004.t1 AT5G11510 35.870 92 50 2 11 98 80 166 2.29e-13 65.1
MS.gene24004.t1 AT5G11510 35.870 92 50 2 11 98 80 166 2.49e-13 64.7
MS.gene24004.t1 AT5G60890 40.000 90 53 1 10 98 11 100 2.63e-13 64.3
MS.gene24004.t1 AT4G18770 36.364 88 55 1 11 98 216 302 4.05e-13 64.3
MS.gene24004.t1 AT5G57620 38.636 88 53 1 12 98 14 101 4.35e-13 63.9
MS.gene24004.t1 AT4G32730 35.227 88 56 1 11 98 86 172 4.41e-13 64.3
MS.gene24004.t1 AT4G32730 35.227 88 56 1 11 98 86 172 4.41e-13 64.3
MS.gene24004.t1 AT4G32730 35.227 88 56 1 11 98 86 172 4.41e-13 64.3
MS.gene24004.t1 AT4G32730 35.227 88 56 1 11 98 86 172 4.41e-13 64.3
MS.gene24004.t1 AT1G48000 36.264 91 57 1 9 98 30 120 4.94e-13 63.2
MS.gene24004.t1 AT1G25340 37.931 87 49 1 12 98 20 101 5.92e-13 63.2
MS.gene24004.t1 AT4G32730 35.227 88 56 1 11 98 86 172 6.47e-13 63.5
MS.gene24004.t1 AT2G36890 38.889 90 53 2 11 98 53 142 6.92e-13 63.2
MS.gene24004.t1 AT1G25340 37.931 87 49 1 12 98 20 101 7.02e-13 63.2
MS.gene24004.t1 AT1G66370 38.636 88 54 0 12 99 10 97 1.11e-12 62.0
MS.gene24004.t1 AT2G36890 38.462 91 54 2 10 98 11 101 2.43e-12 61.6
MS.gene24004.t1 AT3G60460 37.500 88 54 1 12 98 13 100 3.06e-12 61.2
MS.gene24004.t1 AT5G11050 35.227 88 56 1 11 98 104 190 3.19e-12 61.6
MS.gene24004.t1 AT5G02320 34.091 88 57 1 11 98 126 212 3.44e-12 61.6
MS.gene24004.t1 AT5G02320 34.091 88 57 1 11 98 126 212 3.44e-12 61.6
MS.gene24004.t1 AT2G02820 33.333 84 55 1 15 98 33 115 4.77e-12 61.2
MS.gene24004.t1 AT2G02820 33.333 84 55 1 15 98 33 115 5.16e-12 60.8
MS.gene24004.t1 AT5G02320 34.091 88 57 1 11 98 66 152 5.69e-12 60.8
MS.gene24004.t1 AT3G53200 38.095 84 52 0 15 98 14 97 9.13e-12 59.7
MS.gene24004.t1 AT3G09230 35.227 88 56 1 11 98 54 140 9.14e-12 60.5
MS.gene24004.t1 AT3G55730 36.364 88 55 1 11 98 55 141 1.23e-11 60.1
MS.gene24004.t1 AT2G02820 33.333 84 55 1 15 98 33 115 1.25e-11 59.7
MS.gene24004.t1 AT4G33450 36.905 84 52 1 15 98 22 104 1.43e-11 59.3
MS.gene24004.t1 AT3G06490 39.560 91 54 1 9 98 17 107 1.58e-11 59.3
MS.gene24004.t1 AT3G09370 35.227 88 56 1 11 98 142 228 2.07e-11 59.3
MS.gene24004.t1 AT3G09370 35.227 88 56 1 11 98 134 220 2.28e-11 59.3
MS.gene24004.t1 AT5G35550 50.909 55 27 0 44 98 51 105 2.42e-11 58.5
MS.gene24004.t1 AT3G09370 35.227 88 56 1 11 98 129 215 2.60e-11 58.9
MS.gene24004.t1 AT2G37630 31.111 90 60 1 12 99 4 93 3.03e-11 58.9
MS.gene24004.t1 AT5G67300 35.227 88 56 1 11 98 5 91 3.88e-11 58.2
MS.gene24004.t1 AT2G23290 35.227 88 56 1 11 98 12 98 4.25e-11 58.2
MS.gene24004.t1 AT2G39880 36.364 88 55 1 11 98 49 135 5.82e-11 58.2
MS.gene24004.t1 AT5G62320 38.298 94 51 1 12 98 15 108 7.35e-11 57.0
MS.gene24004.t1 AT3G46130 49.123 57 29 0 42 98 9 65 9.07e-11 56.6

Find 32 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAAGAGCGTGGACTTTAC+AGG 0.289074 1.3:-48835838 MS.gene24004:CDS
TGTTTCCTCGTTGGCATCAA+AGG 0.399980 1.3:+48835671 None:intergenic
CTTTCAAAACTATGGATTGA+AGG 0.407960 1.3:+48835376 None:intergenic
CACATTCTCCAGTACGTTGT+AGG 0.434585 1.3:+48835742 None:intergenic
ATGCAGCTTCCAGGCCGATC+AGG 0.435645 1.3:-48835497 MS.gene24004:intron
AAGGGCCCTGTCTTCAAACC+TGG 0.463397 1.3:+48835690 None:intergenic
CTCCGCCCAGGTTTGAAGAC+AGG 0.466135 1.3:-48835696 MS.gene24004:CDS
GTTTCCTCGTTGGCATCAAA+GGG 0.474169 1.3:+48835672 None:intergenic
AACGTACTGGAGAATGTGGC+TGG 0.489443 1.3:-48835737 MS.gene24004:CDS
TCTAACCTGCAAAACAAACA+TGG 0.504844 1.3:+48835872 None:intergenic
TGGATTGAAGGGTGCTCTTG+TGG 0.515096 1.3:+48835388 None:intergenic
TGTAAACAACACGCAGCTCT+AGG 0.516136 1.3:-48835642 MS.gene24004:CDS
CAGGAGGACAATCTGTTGAA+AGG 0.523173 1.3:-48835819 MS.gene24004:CDS
ATGGAATCACCTGATCGGCC+TGG 0.525449 1.3:+48835488 None:intergenic
TTTCAAAACTATGGATTGAA+GGG 0.526238 1.3:+48835377 None:intergenic
ACAGATCAGTGTTTCCTCGT+TGG 0.528620 1.3:+48835662 None:intergenic
ACGCAGCTCTAGGAAATCGC+TGG 0.560123 1.3:-48835632 MS.gene24004:CDS
AGGGCCCTGTCTTCAAACCT+GGG 0.564909 1.3:+48835691 None:intergenic
CGTACTGGAGAATGTGGCTG+GGG 0.566669 1.3:-48835735 MS.gene24004:CDS
GAATTGGAAATTCCTTCAGT+GGG 0.567145 1.3:-48835772 MS.gene24004:CDS
GATACGAGCCTACAACGTAC+TGG 0.574378 1.3:-48835750 MS.gene24004:CDS
AGAATTGGAAATTCCTTCAG+TGG 0.574514 1.3:-48835773 MS.gene24004:CDS
TCCGCCCAGGTTTGAAGACA+GGG 0.592883 1.3:-48835695 MS.gene24004:CDS
ACGTACTGGAGAATGTGGCT+GGG 0.595637 1.3:-48835736 MS.gene24004:CDS
CTAACCTGCAAAACAAACAT+GGG 0.600822 1.3:+48835873 None:intergenic
GTAGGCTCGTATCCCACTGA+AGG 0.606878 1.3:+48835760 None:intergenic
TGGCACGATTATCTCCGCCC+AGG 0.613914 1.3:-48835708 MS.gene24004:CDS
CTACAACGTACTGGAGAATG+TGG 0.614153 1.3:-48835741 MS.gene24004:CDS
GCCCTGTCTTCAAACCTGGG+CGG 0.681570 1.3:+48835694 None:intergenic
AAGAGCGTGGACTTTACAGG+AGG 0.683958 1.3:-48835835 MS.gene24004:CDS
GTACTGGAGAATGTGGCTGG+GGG 0.718923 1.3:-48835734 MS.gene24004:CDS
AGGGCCCTTTGATGCCAACG+AGG 0.728345 1.3:-48835676 MS.gene24004:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATTATTGGAATACA+TGG - chr1.3:48835789-48835808 MS.gene24004:CDS 15.0%
!!! TGTATTCCAATAATTTTTAA+TGG + chr1.3:48835789-48835808 None:intergenic 15.0%
!! ATCAAAATAAACACAATTAC+TGG + chr1.3:48835738-48835757 None:intergenic 20.0%
!! GTGATTCCATTAAAAATTAT+TGG - chr1.3:48835780-48835799 MS.gene24004:CDS 20.0%
! TTGGAATACATGGAAAAAAA+AGG - chr1.3:48835799-48835818 MS.gene24004:CDS 25.0%
!! GTTTTGTAGAGAAAAACAAA+GGG - chr1.3:48835458-48835477 MS.gene24004:intron 25.0%
!!! CAATTACTGGTGTTTTTAAA+TGG + chr1.3:48835725-48835744 None:intergenic 25.0%
AGAAAAACAAAGGGAAGAAT+TGG - chr1.3:48835467-48835486 MS.gene24004:intron 30.0%
CTGGATAGAAATAGCAAAAA+TGG - chr1.3:48835642-48835661 MS.gene24004:CDS 30.0%
! ATGGAAAAAAAAGGTGTAAG+CGG - chr1.3:48835808-48835827 MS.gene24004:CDS 30.0%
! TTTTAATGGAATCACCTGAT+CGG + chr1.3:48835775-48835794 None:intergenic 30.0%
!! GGTTTTGTAGAGAAAAACAA+AGG - chr1.3:48835457-48835476 MS.gene24004:intron 30.0%
AGAATTGGAAATTCCTTCAG+TGG - chr1.3:48835482-48835501 MS.gene24004:intron 35.0%
GAATTGGAAATTCCTTCAGT+GGG - chr1.3:48835483-48835502 MS.gene24004:intron 35.0%
TGCATATCAGAAGGATACAA+CGG + chr1.3:48835843-48835862 None:intergenic 35.0%
! GTTTTGCAGGTTAGAGTTTT+GGG - chr1.3:48835391-48835410 MS.gene24004:CDS 35.0%
! TGGAAAAAAAAGGTGTAAGC+GGG - chr1.3:48835809-48835828 MS.gene24004:CDS 35.0%
! TGTTTTGCAGGTTAGAGTTT+TGG - chr1.3:48835390-48835409 MS.gene24004:CDS 35.0%
!! TTTTGGGAATTAAAAGAGCG+TGG - chr1.3:48835407-48835426 MS.gene24004:intron 35.0%
!!! TATTTTGATATGCAGCTTCC+AGG - chr1.3:48835749-48835768 MS.gene24004:CDS 35.0%
! TAAAAGAGCGTGGACTTTAC+AGG - chr1.3:48835417-48835436 MS.gene24004:intron 40.0%
ACAGATCAGTGTTTCCTCGT+TGG + chr1.3:48835596-48835615 None:intergenic 45.0%
CACATTCTCCAGTACGTTGT+AGG + chr1.3:48835516-48835535 None:intergenic 45.0%
CAGGAGGACAATCTGTTGAA+AGG - chr1.3:48835436-48835455 MS.gene24004:intron 45.0%
CTACAACGTACTGGAGAATG+TGG - chr1.3:48835514-48835533 MS.gene24004:intron 45.0%
GTTTCCTCGTTGGCATCAAA+GGG + chr1.3:48835586-48835605 None:intergenic 45.0%
TGTAAACAACACGCAGCTCT+AGG - chr1.3:48835613-48835632 MS.gene24004:intron 45.0%
TGTTTCCTCGTTGGCATCAA+AGG + chr1.3:48835587-48835606 None:intergenic 45.0%
AACGTACTGGAGAATGTGGC+TGG - chr1.3:48835518-48835537 MS.gene24004:intron 50.0%
ACGTACTGGAGAATGTGGCT+GGG - chr1.3:48835519-48835538 MS.gene24004:intron 50.0%
GATACGAGCCTACAACGTAC+TGG - chr1.3:48835505-48835524 MS.gene24004:intron 50.0%
TGTGGCTGCTGCATATCAGA+AGG + chr1.3:48835852-48835871 None:intergenic 50.0%
! AAGAGCGTGGACTTTACAGG+AGG - chr1.3:48835420-48835439 MS.gene24004:intron 50.0%
!! TGGATTGAAGGGTGCTCTTG+TGG + chr1.3:48835870-48835889 None:intergenic 50.0%
AAGGGCCCTGTCTTCAAACC+TGG + chr1.3:48835568-48835587 None:intergenic 55.0%
AGGGCCCTGTCTTCAAACCT+GGG + chr1.3:48835567-48835586 None:intergenic 55.0%
ATGGAATCACCTGATCGGCC+TGG + chr1.3:48835770-48835789 None:intergenic 55.0%
CGTACTGGAGAATGTGGCTG+GGG - chr1.3:48835520-48835539 MS.gene24004:intron 55.0%
GTACTGGAGAATGTGGCTGG+GGG - chr1.3:48835521-48835540 MS.gene24004:intron 55.0%
GTAGGCTCGTATCCCACTGA+AGG + chr1.3:48835498-48835517 None:intergenic 55.0%
TCCGCCCAGGTTTGAAGACA+GGG - chr1.3:48835560-48835579 MS.gene24004:intron 55.0%
!! ACGCAGCTCTAGGAAATCGC+TGG - chr1.3:48835623-48835642 MS.gene24004:CDS 55.0%
AGGGCCCTTTGATGCCAACG+AGG - chr1.3:48835579-48835598 MS.gene24004:intron 60.0%
ATGCAGCTTCCAGGCCGATC+AGG - chr1.3:48835758-48835777 MS.gene24004:CDS 60.0%
CTCCGCCCAGGTTTGAAGAC+AGG - chr1.3:48835559-48835578 MS.gene24004:intron 60.0%
GCCCTGTCTTCAAACCTGGG+CGG + chr1.3:48835564-48835583 None:intergenic 60.0%
TGGCACGATTATCTCCGCCC+AGG - chr1.3:48835547-48835566 MS.gene24004:intron 60.0%
! GAGAATGTGGCTGGGGGCGT+TGG - chr1.3:48835527-48835546 MS.gene24004:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 48835385 48835892 48835385 ID=MS.gene24004
chr1.3 mRNA 48835385 48835892 48835385 ID=MS.gene24004.t1;Parent=MS.gene24004
chr1.3 exon 48835614 48835892 48835614 ID=MS.gene24004.t1.exon1;Parent=MS.gene24004.t1
chr1.3 CDS 48835614 48835892 48835614 ID=cds.MS.gene24004.t1;Parent=MS.gene24004.t1
chr1.3 exon 48835498 48835513 48835498 ID=MS.gene24004.t1.exon2;Parent=MS.gene24004.t1
chr1.3 CDS 48835498 48835513 48835498 ID=cds.MS.gene24004.t1;Parent=MS.gene24004.t1
chr1.3 exon 48835385 48835413 48835385 ID=MS.gene24004.t1.exon3;Parent=MS.gene24004.t1
chr1.3 CDS 48835385 48835413 48835385 ID=cds.MS.gene24004.t1;Parent=MS.gene24004.t1
Gene Sequence

>MS.gene24004

ATGTTTGTTTTGCAGGTTAGAGTTTTGGGAATTAAAAGAGCGTGGACTTTACAGGAGGACAATCTGTTGAAAGGTTTTGTAGAGAAAAACAAAGGGAAGAATTGGAAATTCCTTCAGTGGGATACGAGCCTACAACGTACTGGAGAATGTGGCTGGGGGCGTTGGCACGATTATCTCCGCCCAGGTTTGAAGACAGGGCCCTTTGATGCCAACGAGGAAACACTGATCTGTAAACAACACGCAGCTCTAGGAAATCGCTGGATAGAAATAGCAAAAATGGTAAGCATTTTTAATGAGTTTCTAATGAGTTTGATGAGTTTCTAATGACTAGTGCATGCCATTTAAAAACACCAGTAATTGTGTTTATTTTGATATGCAGCTTCCAGGCCGATCAGGTGATTCCATTAAAAATTATTGGAATACATGGAAAAAAAAGGTGTAAGCGGGATAATGTTCCGTTGTATCCTTCTGATATGCAGCAGCCACAAGAGCACCCTTCAATCCATAG
Protein sequence

>MS.gene24004.t1

MFVLQVRVLGIKRAWTLQEDNLLKGFVEKNKGKNWKFLQWDTSLQRTGECGWGRWHDYLRPGLKTGPFDANEETLICKQHAALGNRWIEIAKMLPGRSAATRAPFNP