Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24044.t1 | XP_013468354.1 | 89 | 602 | 56 | 2 | 1 | 598 | 1 | 596 | 1.90E-295 | 1024.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24044.t1 | F4KCE9 | 24.2 | 615 | 392 | 18 | 18 | 596 | 11 | 587 | 2.5e-17 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24044.t1 | A0A072VLC9 | 89.0 | 602 | 56 | 2 | 1 | 598 | 1 | 596 | 1.4e-295 | 1024.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24044.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24044.t1 | MTR_1g069020 | 90.365 | 602 | 48 | 2 | 1 | 598 | 1 | 596 | 0.0 | 1080 |
| MS.gene24044.t1 | MTR_1g069015 | 68.195 | 349 | 105 | 2 | 242 | 584 | 131 | 479 | 1.01e-149 | 442 |
| MS.gene24044.t1 | MTR_1g069015 | 59.312 | 349 | 134 | 2 | 1 | 344 | 1 | 346 | 7.60e-133 | 399 |
| MS.gene24044.t1 | MTR_7g039520 | 36.364 | 143 | 73 | 6 | 1 | 134 | 1 | 134 | 1.32e-14 | 76.3 |
| MS.gene24044.t1 | MTR_5g040080 | 36.364 | 143 | 73 | 6 | 1 | 134 | 1 | 134 | 1.65e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24044.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 1.59e-21 | 99.4 |
| MS.gene24044.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 1.63e-21 | 99.4 |
| MS.gene24044.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 2.17e-21 | 99.0 |
| MS.gene24044.t1 | AT1G58210 | 39.130 | 92 | 52 | 1 | 24 | 115 | 64 | 151 | 6.03e-15 | 76.3 |
Find 147 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGAATCAGTACCGGTTTC+TGG | 0.134199 | 1.3:+48296349 | None:intergenic |
| TTACCATCAGATAATATTTC+TGG | 0.175942 | 1.3:+48295431 | None:intergenic |
| TTACCATCAAATGATATTTC+TGG | 0.188236 | 1.3:+48295844 | None:intergenic |
| AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1.3:+48296111 | None:intergenic |
| CAGTAGCAGGTTGCTTCTTC+TGG | 0.230387 | 1.3:+48295113 | None:intergenic |
| CATATGCAGGCTGCTTCTTC+TGG | 0.231464 | 1.3:+48295558 | None:intergenic |
| CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1.3:+48296123 | None:intergenic |
| TAATTAACTGGCTTCAATAT+TGG | 0.249332 | 1.3:-48293668 | MS.gene24044:CDS |
| TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1.3:-48294473 | MS.gene24044:CDS |
| GCAATATATGGGTAATTAAC+TGG | 0.273688 | 1.3:-48293680 | MS.gene24044:CDS |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1.3:+48295085 | None:intergenic |
| AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1.3:+48295868 | None:intergenic |
| ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1.3:+48294724 | None:intergenic |
| TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1.3:-48296335 | MS.gene24044:CDS |
| GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1.3:+48295856 | None:intergenic |
| AAATTCTGTTCCTACGTCTT+TGG | 0.304145 | 1.3:-48295711 | MS.gene24044:CDS |
| TCACATACCATGTTATAAAT+AGG | 0.311211 | 1.3:+48294438 | None:intergenic |
| ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1.3:+48295663 | None:intergenic |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1.3:-48294339 | MS.gene24044:CDS |
| TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1.3:+48294464 | None:intergenic |
| AGATTCGTTGATACATTATC+AGG | 0.360747 | 1.3:+48295455 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1.3:+48295518 | None:intergenic |
| CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1.3:-48295847 | MS.gene24044:intron |
| GGAAGAGTAAACACAATGTC+TGG | 0.368000 | 1.3:-48294983 | MS.gene24044:CDS |
| GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1.3:+48295073 | None:intergenic |
| TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1.3:+48296086 | None:intergenic |
| GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1.3:-48295489 | MS.gene24044:CDS |
| CCAGAAACCGGTACTGATTC+GGG | 0.383266 | 1.3:-48296349 | MS.gene24044:CDS |
| AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1.3:+48294296 | None:intergenic |
| ACCAGAAACCGGTACTGATT+CGG | 0.393560 | 1.3:-48296350 | MS.gene24044:CDS |
| ACATATCCCGTTCATCTTTG+AGG | 0.399307 | 1.3:+48295218 | None:intergenic |
| AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1.3:-48296574 | MS.gene24044:CDS |
| GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1.3:-48296048 | MS.gene24044:CDS |
| AGGATTTAACATTATGCATC+CGG | 0.417454 | 1.3:+48295137 | None:intergenic |
| ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1.3:+48296112 | None:intergenic |
| TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1.3:-48295272 | MS.gene24044:CDS |
| ATTCAGGGAAGAAGCGCTTC+GGG | 0.439330 | 1.3:-48296689 | MS.gene24044:intron |
| AAAGTCCATTCCTACTTCTT+CGG | 0.439348 | 1.3:-48296151 | MS.gene24044:CDS |
| TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1.3:-48294293 | MS.gene24044:CDS |
| GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1.3:-48295059 | MS.gene24044:CDS |
| GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1.3:-48295245 | MS.gene24044:CDS |
| GATTCAGGGAAGAAGCGCTT+CGG | 0.444377 | 1.3:-48296690 | MS.gene24044:intron |
| CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1.3:-48295112 | MS.gene24044:CDS |
| AGTGAGGTCAACGATGTTCA+TGG | 0.449119 | 1.3:-48295629 | MS.gene24044:CDS |
| GGCACTCCTCAAAGATGAAC+GGG | 0.449784 | 1.3:-48295224 | MS.gene24044:CDS |
| AACACCCGTTCAATCACAAA+AGG | 0.455345 | 1.3:-48295005 | MS.gene24044:CDS |
| GTCAATGTTGTTCATGGTAG+TGG | 0.459300 | 1.3:-48295178 | MS.gene24044:CDS |
| CAGAAGAAGCAGCCTGCATA+TGG | 0.461694 | 1.3:-48295557 | MS.gene24044:CDS |
| GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1.3:+48296087 | None:intergenic |
| CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1.3:+48295253 | None:intergenic |
| GGTAGGGTCAATGTTGTTCA+TGG | 0.469284 | 1.3:-48295184 | MS.gene24044:CDS |
| TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1.3:+48296093 | None:intergenic |
| ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1.3:+48295919 | None:intergenic |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1.3:-48295504 | MS.gene24044:CDS |
| GAACGGTTACATTATACGAT+TGG | 0.482529 | 1.3:-48297200 | MS.gene24044:CDS |
| TGTCACAAATCTCCGGCGCT+TGG | 0.483535 | 1.3:-48293643 | MS.gene24044:CDS |
| CTCGATGTAGGATGCTGCTT+CGG | 0.487404 | 1.3:+48295970 | None:intergenic |
| AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1.3:+48295062 | None:intergenic |
| TTATCAGGAACAACAGTATC+CGG | 0.501961 | 1.3:+48295883 | None:intergenic |
| TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1.3:-48297217 | MS.gene24044:CDS |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1.3:+48295530 | None:intergenic |
| GGCCGTCGAAAATCATGATC+CGG | 0.505332 | 1.3:-48295902 | MS.gene24044:CDS |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1.3:-48295510 | MS.gene24044:CDS |
| AACAATTCAGTGCCTTAATG+TGG | 0.514468 | 1.3:-48293613 | MS.gene24044:CDS |
| GTCAACGATGTTCATGGCAG+TGG | 0.517162 | 1.3:-48295623 | MS.gene24044:CDS |
| AGTCCTTAGTACTATGCAAC+CGG | 0.517646 | 1.3:+48295582 | None:intergenic |
| GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1.3:-48294289 | MS.gene24044:intron |
| TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1.3:+48295243 | None:intergenic |
| ACCGGCCACTACGTCTAGTC+CGG | 0.527410 | 1.3:+48295600 | None:intergenic |
| CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1.3:+48297205 | None:intergenic |
| AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1.3:+48296342 | None:intergenic |
| GTTAGAGAACAACCAGAAAC+CGG | 0.534072 | 1.3:-48296361 | MS.gene24044:CDS |
| CGGTTACATTATACGATTGG+TGG | 0.540059 | 1.3:-48297197 | MS.gene24044:CDS |
| TTGAGAGGATCTCCATATGC+AGG | 0.543432 | 1.3:+48295545 | None:intergenic |
| GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1.3:-48295038 | MS.gene24044:CDS |
| GACTTTAATATTATGCAACC+TGG | 0.548218 | 1.3:+48296008 | None:intergenic |
| TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1.3:-48296295 | MS.gene24044:intron |
| AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1.3:+48297145 | None:intergenic |
| TCAGGCAATACCGAAGAAGT+AGG | 0.549862 | 1.3:+48296141 | None:intergenic |
| AGCAGGTTGCTTCTTCTGGT+AGG | 0.553452 | 1.3:+48295117 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1.3:+48294339 | None:intergenic |
| TGGCCGGTTGCATAGTACTA+AGG | 0.554205 | 1.3:-48295585 | MS.gene24044:CDS |
| AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1.3:-48296071 | MS.gene24044:CDS |
| ACGATGTTCATGGCAGTGGC+CGG | 0.558626 | 1.3:-48295619 | MS.gene24044:CDS |
| AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1.3:-48297150 | MS.gene24044:CDS |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1.3:+48295100 | None:intergenic |
| GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1.3:-48295046 | MS.gene24044:CDS |
| ATTGGCTTGTCACAAATCTC+CGG | 0.563091 | 1.3:-48293650 | MS.gene24044:CDS |
| TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1.3:+48297137 | None:intergenic |
| GCGGGAATAGACGTAGTGCC+CGG | 0.565247 | 1.3:-48295156 | MS.gene24044:CDS |
| AGTAAACACAATGTCTGGGC+AGG | 0.565926 | 1.3:-48294978 | MS.gene24044:CDS |
| TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1.3:+48295271 | None:intergenic |
| TTGAGAGGACCTCTCGATGT+AGG | 0.566402 | 1.3:+48295958 | None:intergenic |
| CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1.3:-48295205 | MS.gene24044:CDS |
| ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1.3:-48295206 | MS.gene24044:CDS |
| AGAAGAAGAAGAAGGTGTGG+GGG | 0.572575 | 1.3:+48297236 | None:intergenic |
| ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1.3:-48295201 | MS.gene24044:CDS |
| AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1.3:-48296105 | MS.gene24044:CDS |
| CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1.3:-48294823 | MS.gene24044:CDS |
| TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1.3:+48295943 | None:intergenic |
| AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1.3:-48296054 | MS.gene24044:CDS |
| TTCTTCGGTATTGCCTGAAG+AGG | 0.578425 | 1.3:-48296136 | MS.gene24044:CDS |
| GAATGTAAGTCACTCAAACA+AGG | 0.580926 | 1.3:-48294801 | MS.gene24044:CDS |
| TGACTTACATTCCTTCCTTG+AGG | 0.581463 | 1.3:+48294812 | None:intergenic |
| GGATTTAACATTATGCATCC+GGG | 0.586374 | 1.3:+48295138 | None:intergenic |
| ATGTTGTTCATGGTAGTGGC+GGG | 0.588592 | 1.3:-48295174 | MS.gene24044:CDS |
| AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1.3:+48295051 | None:intergenic |
| CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1.3:-48295434 | MS.gene24044:intron |
| CAAATCTCCGGCGCTTGGAG+AGG | 0.594662 | 1.3:-48293638 | MS.gene24044:CDS |
| GAAGAGTAAACACAATGTCT+GGG | 0.597995 | 1.3:-48294982 | MS.gene24044:CDS |
| CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1.3:-48296581 | MS.gene24044:CDS |
| ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1.3:-48295004 | MS.gene24044:CDS |
| CAATACCGAAGAAGTAGGAA+TGG | 0.601021 | 1.3:+48296146 | None:intergenic |
| TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1.3:+48295042 | None:intergenic |
| AGGCACTCCTCAAAGATGAA+CGG | 0.602783 | 1.3:-48295225 | MS.gene24044:CDS |
| AATGTTGTTCATGGTAGTGG+CGG | 0.603017 | 1.3:-48295175 | MS.gene24044:CDS |
| TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1.3:+48294465 | None:intergenic |
| GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1.3:-48295260 | MS.gene24044:CDS |
| AATGTAAGTCACTCAAACAA+GGG | 0.606573 | 1.3:-48294800 | MS.gene24044:CDS |
| GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1.3:-48295043 | MS.gene24044:CDS |
| GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1.3:-48296628 | MS.gene24044:CDS |
| ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1.3:+48296623 | None:intergenic |
| ACAATTCAGTGCCTTAATGT+GGG | 0.612125 | 1.3:-48293612 | MS.gene24044:CDS |
| AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1.3:-48295923 | MS.gene24044:CDS |
| AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1.3:-48296072 | MS.gene24044:CDS |
| TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1.3:-48295200 | MS.gene24044:CDS |
| TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1.3:-48295259 | MS.gene24044:CDS |
| TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1.3:+48297131 | None:intergenic |
| TATTATCAAAAGATATGATG+AGG | 0.626070 | 1.3:-48296650 | MS.gene24044:CDS |
| TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1.3:-48294827 | MS.gene24044:CDS |
| TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1.3:+48296624 | None:intergenic |
| CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1.3:+48294760 | None:intergenic |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1.3:-48297177 | MS.gene24044:CDS |
| GCCGGACTAGACGTAGTGGC+CGG | 0.638720 | 1.3:-48295601 | MS.gene24044:CDS |
| TCAACAACCTATTTATAACA+TGG | 0.640146 | 1.3:-48294445 | MS.gene24044:intron |
| GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1.3:-48294335 | MS.gene24044:CDS |
| GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1.3:-48294882 | MS.gene24044:CDS |
| TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1.3:+48296113 | None:intergenic |
| AAGCAGCATCCTACATCGAG+AGG | 0.662773 | 1.3:-48295967 | MS.gene24044:CDS |
| TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1.3:-48295645 | MS.gene24044:CDS |
| AGTGGCCGGACTAGACGTAG+TGG | 0.687139 | 1.3:-48295605 | MS.gene24044:CDS |
| CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1.3:+48297148 | None:intergenic |
| AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1.3:+48296088 | None:intergenic |
| TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1.3:+48294468 | None:intergenic |
| GGGGTGCAATTAGAAGAACT+GGG | 0.727442 | 1.3:+48297255 | None:intergenic |
| AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1.3:-48296070 | MS.gene24044:CDS |
| TCTCTCGTGACCAAAGACGT+AGG | 0.753414 | 1.3:+48295701 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAAAAAAATCTAA+AGG | + | chr1.3:48296805-48296824 | None:intergenic | 10.0% |
| !! | AAAGATGTTATAAGAAAAAA+AGG | - | chr1.3:48295953-48295972 | MS.gene24044:CDS | 15.0% |
| !! | AAGATGTTATAAGAAAAAAA+GGG | - | chr1.3:48295954-48295973 | MS.gene24044:CDS | 15.0% |
| !! | TGTAAAAAAAAAACAATGAT+TGG | + | chr1.3:48296154-48296173 | None:intergenic | 15.0% |
| !!! | AATAGATGATCTTATAATTT+TGG | - | chr1.3:48296938-48296957 | MS.gene24044:intron | 15.0% |
| !!! | ATAGTTTTTGTTAATTTCAT+CGG | - | chr1.3:48293931-48293950 | MS.gene24044:intron | 15.0% |
| !!! | ATTTTCAAGAGTTTTTTATT+TGG | - | chr1.3:48294436-48294455 | MS.gene24044:intron | 15.0% |
| !!! | TTTCTTTATGTTATTTTTGA+AGG | - | chr1.3:48296767-48296786 | MS.gene24044:intron | 15.0% |
| !!! | TTTTTTCTTATAACATCTTT+TGG | + | chr1.3:48295953-48295972 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCTAAAGGAAC+TGG | + | chr1.3:48296799-48296818 | None:intergenic | 20.0% |
| !! | AAAAAAACAAAAATCCATCA+GGG | + | chr1.3:48294398-48294417 | None:intergenic | 20.0% |
| !! | AAATATAAAAACAGTTACTG+TGG | - | chr1.3:48294103-48294122 | MS.gene24044:intron | 20.0% |
| !! | CTATTCCAAAGATTAAATAA+TGG | + | chr1.3:48296923-48296942 | None:intergenic | 20.0% |
| !! | GAGTGTATATATTATCAATT+AGG | + | chr1.3:48296222-48296241 | None:intergenic | 20.0% |
| !! | GTTAACACTAAACTATAAAT+TGG | - | chr1.3:48293992-48294011 | MS.gene24044:intron | 20.0% |
| !! | TATTAAGATATAGAAACTGT+AGG | + | chr1.3:48295531-48295550 | None:intergenic | 20.0% |
| !! | TATTATCAAAAGATATGATG+AGG | - | chr1.3:48294207-48294226 | MS.gene24044:intron | 20.0% |
| !! | TTACTCTATTCTTTATGTTT+GGG | - | chr1.3:48296341-48296360 | MS.gene24044:CDS | 20.0% |
| !! | TTTACTCTATTCTTTATGTT+TGG | - | chr1.3:48296340-48296359 | MS.gene24044:CDS | 20.0% |
| !!! | AATGAATTTGCATTTTATCA+AGG | - | chr1.3:48294547-48294566 | MS.gene24044:intron | 20.0% |
| !!! | ATGGTATATATGTTTTGATT+AGG | - | chr1.3:48294248-48294267 | MS.gene24044:intron | 20.0% |
| !!! | GAGAATTTTTTAAGTTAGTT+GGG | + | chr1.3:48296688-48296707 | None:intergenic | 20.0% |
| !!! | GGTTTAATAATTTTTCTCTT+AGG | + | chr1.3:48296006-48296025 | None:intergenic | 20.0% |
| !!! | GTTTTATTAATTTTTGTAGC+AGG | - | chr1.3:48294677-48294696 | MS.gene24044:intron | 20.0% |
| !!! | TATAATTTTGGAATGATACT+TGG | - | chr1.3:48296950-48296969 | MS.gene24044:intron | 20.0% |
| !!! | TCATCATATCTTTTGATAAT+AGG | + | chr1.3:48294208-48294227 | None:intergenic | 20.0% |
| !!! | TGAGAATTTTTTAAGTTAGT+TGG | + | chr1.3:48296689-48296708 | None:intergenic | 20.0% |
| !!! | TGGTATATATGTTTTGATTA+GGG | - | chr1.3:48294249-48294268 | MS.gene24044:intron | 20.0% |
| !!! | TGTTTTTTTCTTCTATTTCA+TGG | - | chr1.3:48294409-48294428 | MS.gene24044:intron | 20.0% |
| ! | AAAAAACAAAAATCCATCAG+GGG | + | chr1.3:48294397-48294416 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACAATAGCAT+TGG | + | chr1.3:48296292-48296311 | None:intergenic | 25.0% |
| ! | AAGAAACATTCTAAATAAGC+TGG | + | chr1.3:48296753-48296772 | None:intergenic | 25.0% |
| ! | AATCTTGTTGAATCAGAAAT+TGG | - | chr1.3:48293819-48293838 | MS.gene24044:intron | 25.0% |
| ! | ACATTTAATGTTGTGATTCA+GGG | - | chr1.3:48294153-48294172 | MS.gene24044:intron | 25.0% |
| ! | AGAAACATTCTAAATAAGCT+GGG | + | chr1.3:48296752-48296771 | None:intergenic | 25.0% |
| ! | CTTCATGAATAAACAATGAT+TGG | + | chr1.3:48296184-48296203 | None:intergenic | 25.0% |
| ! | GAAAAAAACAAAAATCCATC+AGG | + | chr1.3:48294399-48294418 | None:intergenic | 25.0% |
| ! | GACAATTACTATTCTAACAT+TGG | + | chr1.3:48297114-48297133 | None:intergenic | 25.0% |
| ! | GGTAATAGTAATTGTTTACT+GGG | - | chr1.3:48296855-48296874 | MS.gene24044:intron | 25.0% |
| ! | TCAACAACCTATTTATAACA+TGG | - | chr1.3:48296412-48296431 | MS.gene24044:CDS | 25.0% |
| ! | TCACATACCATGTTATAAAT+AGG | + | chr1.3:48296422-48296441 | None:intergenic | 25.0% |
| ! | TGGTAATAGTAATTGTTTAC+TGG | - | chr1.3:48296854-48296873 | MS.gene24044:intron | 25.0% |
| ! | TTACCATCAAATGATATTTC+TGG | + | chr1.3:48295016-48295035 | None:intergenic | 25.0% |
| ! | TTACCATCAGATAATATTTC+TGG | + | chr1.3:48295429-48295448 | None:intergenic | 25.0% |
| ! | TTCTGATTCAACAAGATTAT+TGG | + | chr1.3:48293817-48293836 | None:intergenic | 25.0% |
| !! | ATTGTTAGCATTTTTGTACA+TGG | - | chr1.3:48296297-48296316 | MS.gene24044:CDS | 25.0% |
| !! | TAATTAACTGGCTTCAATAT+TGG | - | chr1.3:48297189-48297208 | MS.gene24044:CDS | 25.0% |
| !! | TTCATAAGTGTCAATGTTTT+TGG | - | chr1.3:48294326-48294345 | MS.gene24044:CDS | 25.0% |
| !! | TTGCAAGATATTGTTGATAA+TGG | - | chr1.3:48294358-48294377 | MS.gene24044:intron | 25.0% |
| !! | TTTGTTATGGTTATTGCTAT+TGG | - | chr1.3:48296834-48296853 | MS.gene24044:intron | 25.0% |
| !!! | ACTATTAAGTATTGAAAGTC+AGG | + | chr1.3:48293916-48293935 | None:intergenic | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+CGG | + | chr1.3:48294203-48294222 | None:intergenic | 25.0% |
| !!! | ATCGGTTTTGAATTTATGTT+TGG | - | chr1.3:48293949-48293968 | MS.gene24044:intron | 25.0% |
| !!! | GGTATATATGTTTTGATTAG+GGG | - | chr1.3:48294250-48294269 | MS.gene24044:intron | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1.3:48296353-48296372 | MS.gene24044:CDS | 25.0% |
| AATGTAAGTCACTCAAACAA+GGG | - | chr1.3:48296057-48296076 | MS.gene24044:CDS | 30.0% | |
| ACACTTATGAATACAAACCT+GGG | + | chr1.3:48294317-48294336 | None:intergenic | 30.0% | |
| ACATATCTTGTTCATCTTCA+AGG | + | chr1.3:48295197-48295216 | None:intergenic | 30.0% | |
| AGATTCGTTGATACATTATC+AGG | + | chr1.3:48295405-48295424 | None:intergenic | 30.0% | |
| AGGATTTAACATTATGCATC+CGG | + | chr1.3:48295723-48295742 | None:intergenic | 30.0% | |
| AGTCTAAAAAAATCCAGATC+TGG | - | chr1.3:48296120-48296139 | MS.gene24044:CDS | 30.0% | |
| ATTGGAAAATTTACCAGATC+TGG | + | chr1.3:48296136-48296155 | None:intergenic | 30.0% | |
| CACATTTAATGTTGTGATTC+AGG | - | chr1.3:48294152-48294171 | MS.gene24044:intron | 30.0% | |
| CTTCCAGAAATATCATTTGA+TGG | - | chr1.3:48295010-48295029 | MS.gene24044:CDS | 30.0% | |
| CTTCCAGAAATATTATCTGA+TGG | - | chr1.3:48295423-48295442 | MS.gene24044:intron | 30.0% | |
| GAAACATTCTAAATAAGCTG+GGG | + | chr1.3:48296751-48296770 | None:intergenic | 30.0% | |
| GACGGTAAATATTTCGATAA+TGG | - | chr1.3:48294580-48294599 | MS.gene24044:intron | 30.0% | |
| GACTTTAATATTATGCAACC+TGG | + | chr1.3:48294852-48294871 | None:intergenic | 30.0% | |
| GATATAGAAACTGTAGGTAT+AGG | + | chr1.3:48295525-48295544 | None:intergenic | 30.0% | |
| GCAATATATGGGTAATTAAC+TGG | - | chr1.3:48297177-48297196 | MS.gene24044:CDS | 30.0% | |
| GTTACTTGAGTTAATCGTAT+AGG | - | chr1.3:48293843-48293862 | MS.gene24044:intron | 30.0% | |
| TACAAGTACAACAGCAAAAT+CGG | + | chr1.3:48296999-48297018 | None:intergenic | 30.0% | |
| TACTAAGATATAGAGACTGT+AGG | + | chr1.3:48295101-48295120 | None:intergenic | 30.0% | |
| TAGATTGTAAATCTTCCAGT+AGG | + | chr1.3:48296457-48296476 | None:intergenic | 30.0% | |
| TATGTCAATTAAGATGAGTG+AGG | - | chr1.3:48295212-48295231 | MS.gene24044:CDS | 30.0% | |
| ! | ATGCGAGTTTTGCAATATAT+GGG | - | chr1.3:48297166-48297185 | MS.gene24044:CDS | 30.0% |
| ! | ATTAATTTTTGTAGCAGGTG+AGG | - | chr1.3:48294682-48294701 | MS.gene24044:intron | 30.0% |
| ! | CAAAGATTAAATAATGGAGC+CGG | + | chr1.3:48296917-48296936 | None:intergenic | 30.0% |
| ! | TATGCGAGTTTTGCAATATA+TGG | - | chr1.3:48297165-48297184 | MS.gene24044:CDS | 30.0% |
| ! | TCTTTGATATCACCTTTTAG+AGG | - | chr1.3:48296549-48296568 | MS.gene24044:intron | 30.0% |
| !! | AAGTATTGAAAGTCAGGTTT+GGG | + | chr1.3:48293910-48293929 | None:intergenic | 30.0% |
| !! | CTATTTGATCAGCTTTGTTA+TGG | - | chr1.3:48296821-48296840 | MS.gene24044:intron | 30.0% |
| !! | TAAGTATTGAAAGTCAGGTT+TGG | + | chr1.3:48293911-48293930 | None:intergenic | 30.0% |
| !!! | AGTTGTATTTTGAAACATGC+CGG | - | chr1.3:48297061-48297080 | MS.gene24044:intron | 30.0% |
| !!! | ATAAGTGTCAATGTTTTTGG+TGG | - | chr1.3:48294329-48294348 | MS.gene24044:CDS | 30.0% |
| !!! | ATTTGGCTTTTCTGAAAACT+GGG | - | chr1.3:48294453-48294472 | MS.gene24044:CDS | 30.0% |
| !!! | TATTTGGCTTTTCTGAAAAC+TGG | - | chr1.3:48294452-48294471 | MS.gene24044:CDS | 30.0% |
| !!! | TCTTTTGGTTTTTGCTGAAA+AGG | + | chr1.3:48295938-48295957 | None:intergenic | 30.0% |
| !!! | TGAAAAGGTTTTGGAAATTC+TGG | + | chr1.3:48295923-48295942 | None:intergenic | 30.0% |
| !!! | TTTTTTAGACTCAATGACTC+TGG | + | chr1.3:48296111-48296130 | None:intergenic | 30.0% |
| AAAGTCCATTCCTACTTCTT+CGG | - | chr1.3:48294706-48294725 | MS.gene24044:intron | 35.0% | |
| AAAGTCTCAAAGAAGATGAG+TGG | - | chr1.3:48294785-48294804 | MS.gene24044:CDS | 35.0% | |
| AAATTCTGTTCCTACGTCTT+TGG | - | chr1.3:48295146-48295165 | MS.gene24044:CDS | 35.0% | |
| AACAATTCAGTGCCTTAATG+TGG | - | chr1.3:48297244-48297263 | MS.gene24044:CDS | 35.0% | |
| AAGCAAGAAGAAGAAGAAGA+AGG | + | chr1.3:48293632-48293651 | None:intergenic | 35.0% | |
| AAGTCTCAAAGAAGATGAGT+GGG | - | chr1.3:48294786-48294805 | MS.gene24044:CDS | 35.0% | |
| AATGATGAAGAGCCTCTAAA+AGG | + | chr1.3:48296564-48296583 | None:intergenic | 35.0% | |
| ACAAGTACAACAGCAAAATC+GGG | + | chr1.3:48296998-48297017 | None:intergenic | 35.0% | |
| ACAATTCAGTGCCTTAATGT+GGG | - | chr1.3:48297245-48297264 | MS.gene24044:CDS | 35.0% | |
| ACGGGATATGTCAATTAAGA+CGG | - | chr1.3:48295651-48295670 | MS.gene24044:CDS | 35.0% | |
| ACTAATACCTAACTGAGGTT+CGG | - | chr1.3:48296708-48296727 | MS.gene24044:intron | 35.0% | |
| AGAGATACTTACGCAAAACA+AGG | + | chr1.3:48296664-48296683 | None:intergenic | 35.0% | |
| ATATGTCAATTAAGACGGGT+AGG | - | chr1.3:48295656-48295675 | MS.gene24044:CDS | 35.0% | |
| CACTTATGAATACAAACCTG+GGG | + | chr1.3:48294316-48294335 | None:intergenic | 35.0% | |
| CATTAATAAACAGTGCACAC+TGG | - | chr1.3:48294276-48294295 | MS.gene24044:intron | 35.0% | |
| CCTGAATTTCTGTAATCTCA+CGG | + | chr1.3:48296521-48296540 | None:intergenic | 35.0% | |
| CGGCTCCATTATTTAATCTT+TGG | - | chr1.3:48296915-48296934 | MS.gene24044:intron | 35.0% | |
| GAACGGTTACATTATACGAT+TGG | - | chr1.3:48293657-48293676 | MS.gene24044:CDS | 35.0% | |
| GAAGAGTAAACACAATGTCT+GGG | - | chr1.3:48295875-48295894 | MS.gene24044:CDS | 35.0% | |
| GAATGTAAGTCACTCAAACA+AGG | - | chr1.3:48296056-48296075 | MS.gene24044:CDS | 35.0% | |
| GACACTTATGAATACAAACC+TGG | + | chr1.3:48294318-48294337 | None:intergenic | 35.0% | |
| GAGATTACAGAAATTCAGGA+AGG | - | chr1.3:48296522-48296541 | MS.gene24044:intron | 35.0% | |
| GATATAGAGACTGTAGGTAT+AGG | + | chr1.3:48295095-48295114 | None:intergenic | 35.0% | |
| GGATTTAACATTATGCATCC+GGG | + | chr1.3:48295722-48295741 | None:intergenic | 35.0% | |
| GGTTGTGGAAAATCATGATT+TGG | - | chr1.3:48295368-48295387 | MS.gene24044:intron | 35.0% | |
| GTAAAAATAGACGTAGTACC+AGG | - | chr1.3:48294831-48294850 | MS.gene24044:CDS | 35.0% | |
| TATCAAGGAACTTTCTCTGA+CGG | - | chr1.3:48294562-48294581 | MS.gene24044:intron | 35.0% | |
| TATGTCAATTAAGACGGGTA+GGG | - | chr1.3:48295657-48295676 | MS.gene24044:CDS | 35.0% | |
| TCTAACATTGGATTTGCATC+TGG | + | chr1.3:48297102-48297121 | None:intergenic | 35.0% | |
| TCTTCTGTAAAATCTCCTCA+AGG | - | chr1.3:48296030-48296049 | MS.gene24044:CDS | 35.0% | |
| TGACGAGAATACTTACTTTG+TGG | + | chr1.3:48293741-48293760 | None:intergenic | 35.0% | |
| TGATATCTTCAACAACCTAC+TGG | - | chr1.3:48296439-48296458 | MS.gene24044:intron | 35.0% | |
| TTACTGGGAAATGTTTAAGC+TGG | - | chr1.3:48296870-48296889 | MS.gene24044:intron | 35.0% | |
| TTATCAGGAACAACAGTATC+CGG | + | chr1.3:48294977-48294996 | None:intergenic | 35.0% | |
| TTCTCACTAATACCTAACTG+AGG | - | chr1.3:48296703-48296722 | MS.gene24044:intron | 35.0% | |
| TTGTACTTGTAGTCTTCAGT+GGG | - | chr1.3:48297008-48297027 | MS.gene24044:intron | 35.0% | |
| TTTAATTGTTGTCGCAGCTT+TGG | - | chr1.3:48295122-48295141 | MS.gene24044:CDS | 35.0% | |
| TTTAGAGGCTCTTCATCATT+GGG | - | chr1.3:48296564-48296583 | MS.gene24044:CDS | 35.0% | |
| ! | ATGATTTTCCACAACCTTCA+AGG | + | chr1.3:48295364-48295383 | None:intergenic | 35.0% |
| ! | CTTTTTACATTTTACCGTCC+AGG | - | chr1.3:48296494-48296513 | MS.gene24044:intron | 35.0% |
| ! | GGTTTTTGCTGAAAAGGTTT+TGG | + | chr1.3:48295932-48295951 | None:intergenic | 35.0% |
| ! | TCAAGCTAATGCAAAAGCAT+AGG | - | chr1.3:48294037-48294056 | MS.gene24044:intron | 35.0% |
| ! | TCCTACTTCTTTGTTATCAC+CGG | - | chr1.3:48295585-48295604 | MS.gene24044:CDS | 35.0% |
| ! | TCTTCCCTTTTGTGATTGAA+CGG | + | chr1.3:48295860-48295879 | None:intergenic | 35.0% |
| !! | AGATTTGCTGGTACATTATC+AGG | + | chr1.3:48294992-48295011 | None:intergenic | 35.0% |
| !! | AGGCATTTAACTTGCTTTAC+TGG | - | chr1.3:48293863-48293882 | MS.gene24044:intron | 35.0% |
| !! | GATATTTCTGGAAGATTTGC+TGG | + | chr1.3:48295004-48295023 | None:intergenic | 35.0% |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1.3:48296357-48296376 | MS.gene24044:CDS | 35.0% |
| !! | TTTTAGAGGCTCTTCATCAT+TGG | - | chr1.3:48296563-48296582 | MS.gene24044:CDS | 35.0% |
| AAACAGTGCACACTGGATAA+TGG | - | chr1.3:48294283-48294302 | MS.gene24044:intron | 40.0% | |
| AACACCCGTTCAATCACAAA+AGG | - | chr1.3:48295852-48295871 | MS.gene24044:CDS | 40.0% | |
| AATGGAGTCTTGCAATTCTC+TGG | + | chr1.3:48294749-48294768 | None:intergenic | 40.0% | |
| ACACCCGTTCAATCACAAAA+GGG | - | chr1.3:48295853-48295872 | MS.gene24044:CDS | 40.0% | |
| ACATATCCCGTTCATCTTTG+AGG | + | chr1.3:48295642-48295661 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGAAGGTG+TGG | + | chr1.3:48293627-48293646 | None:intergenic | 40.0% | |
| AGTAGAACAAAGAAGCAAGC+AGG | + | chr1.3:48293787-48293806 | None:intergenic | 40.0% | |
| AGTCCTTAGTACTATGCAAC+CGG | + | chr1.3:48295278-48295297 | None:intergenic | 40.0% | |
| AGTCTCAAAGAAGATGAGTG+GGG | - | chr1.3:48294787-48294806 | MS.gene24044:CDS | 40.0% | |
| ATATACCATCGACAGTCTCA+AGG | + | chr1.3:48294237-48294256 | None:intergenic | 40.0% | |
| ATGGAGTCTTGCAATTCTCT+GGG | + | chr1.3:48294748-48294767 | None:intergenic | 40.0% | |
| CAATACCGAAGAAGTAGGAA+TGG | + | chr1.3:48294714-48294733 | None:intergenic | 40.0% | |
| CCGTGAGATTACAGAAATTC+AGG | - | chr1.3:48296518-48296537 | MS.gene24044:intron | 40.0% | |
| CGGGATATGTCAATTAAGAC+GGG | - | chr1.3:48295652-48295671 | MS.gene24044:CDS | 40.0% | |
| CGGTTACATTATACGATTGG+TGG | - | chr1.3:48293660-48293679 | MS.gene24044:CDS | 40.0% | |
| CGTATAATGTAACCGTTCGT+TGG | + | chr1.3:48293655-48293674 | None:intergenic | 40.0% | |
| CTGGTAATATAAGCATGAGC+CGG | + | chr1.3:48297083-48297102 | None:intergenic | 40.0% | |
| CTGTAAAATCTCCTCAAGGA+AGG | - | chr1.3:48296034-48296053 | MS.gene24044:CDS | 40.0% | |
| GCTTTACTGGAAAGAATGTC+AGG | - | chr1.3:48293876-48293895 | MS.gene24044:intron | 40.0% | |
| GGAAGAGTAAACACAATGTC+TGG | - | chr1.3:48295874-48295893 | MS.gene24044:CDS | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1.3:48295679-48295698 | MS.gene24044:CDS | 40.0% | |
| GTTAGAGAACAACCAGAAAC+CGG | - | chr1.3:48294496-48294515 | MS.gene24044:intron | 40.0% | |
| GTTGATATTGCTTGTGGTAG+TGG | - | chr1.3:48294809-48294828 | MS.gene24044:CDS | 40.0% | |
| GTTGTACTTGTAGTCTTCAG+TGG | - | chr1.3:48297007-48297026 | MS.gene24044:intron | 40.0% | |
| TATACCATCGACAGTCTCAA+GGG | + | chr1.3:48294236-48294255 | None:intergenic | 40.0% | |
| TCCGGTGATAACAAAGAAGT+AGG | + | chr1.3:48295589-48295608 | None:intergenic | 40.0% | |
| TCGGGACGATAATTCAAGAT+AGG | + | chr1.3:48296980-48296999 | None:intergenic | 40.0% | |
| TCTTTATCTGGATGTGTTGC+AGG | + | chr1.3:48295775-48295794 | None:intergenic | 40.0% | |
| TCTTTCTCTGGATTCTTGAG+AGG | + | chr1.3:48295330-48295349 | None:intergenic | 40.0% | |
| TGACTTACATTCCTTCCTTG+AGG | + | chr1.3:48296048-48296067 | None:intergenic | 40.0% | |
| TGAGACTTTGCATTCATCTC+CGG | + | chr1.3:48294774-48294793 | None:intergenic | 40.0% | |
| TGATTGCGCCAAAACTCTAA+GGG | + | chr1.3:48296395-48296414 | None:intergenic | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | - | chr1.3:48293680-48293699 | MS.gene24044:CDS | 40.0% | |
| TTATCACCGGATAAGACCAT+GGG | - | chr1.3:48295598-48295617 | MS.gene24044:CDS | 40.0% | |
| TTCTTCTTGCTTCCAACGAA+CGG | - | chr1.3:48293640-48293659 | MS.gene24044:CDS | 40.0% | |
| TTGATTGCGCCAAAACTCTA+AGG | + | chr1.3:48296396-48296415 | None:intergenic | 40.0% | |
| ! | AAGAAGAAGAAGAAGGTGTG+GGG | + | chr1.3:48293625-48293644 | None:intergenic | 40.0% |
| ! | AGATTAAATAATGGAGCCGG+TGG | + | chr1.3:48296914-48296933 | None:intergenic | 40.0% |
| ! | ATCCGGATCATGATTTTCGA+CGG | + | chr1.3:48294960-48294979 | None:intergenic | 40.0% |
| ! | CTTCCCTTTTGTGATTGAAC+GGG | + | chr1.3:48295859-48295878 | None:intergenic | 40.0% |
| ! | GAAGAAGAAGAAGAAGGTGT+GGG | + | chr1.3:48293626-48293645 | None:intergenic | 40.0% |
| ! | GATTAAATAATGGAGCCGGT+GGG | + | chr1.3:48296913-48296932 | None:intergenic | 40.0% |
| ! | GCACGATTTTACCCACATTA+AGG | + | chr1.3:48297259-48297278 | None:intergenic | 40.0% |
| ! | GGAGATTTTACAGAAGATGC+AGG | + | chr1.3:48296027-48296046 | None:intergenic | 40.0% |
| ! | TTCTACCTCCCTTAGAGTTT+TGG | - | chr1.3:48296384-48296403 | MS.gene24044:CDS | 40.0% |
| !! | AATGTTGTTCATGGTAGTGG+CGG | - | chr1.3:48295682-48295701 | MS.gene24044:CDS | 40.0% |
| !! | ATTGGCTTGTCACAAATCTC+CGG | - | chr1.3:48297207-48297226 | MS.gene24044:CDS | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1.3:48296360-48296379 | MS.gene24044:CDS | 40.0% |
| AACGTAGAACTCTAACCCAC+CGG | - | chr1.3:48296895-48296914 | MS.gene24044:intron | 45.0% | |
| AATTGCAAGACTCCATTCCC+CGG | - | chr1.3:48294752-48294771 | MS.gene24044:CDS | 45.0% | |
| AGAACAAAGAAGCAAGCAGG+TGG | + | chr1.3:48293784-48293803 | None:intergenic | 45.0% | |
| AGACTTTGCATTCATCTCCG+GGG | + | chr1.3:48294772-48294791 | None:intergenic | 45.0% | |
| AGGCACTCCTCAAAGATGAA+CGG | - | chr1.3:48295632-48295651 | MS.gene24044:CDS | 45.0% | |
| AGTAAACACAATGTCTGGGC+AGG | - | chr1.3:48295879-48295898 | MS.gene24044:CDS | 45.0% | |
| AGTGAGGTCAACGATGTTCA+TGG | - | chr1.3:48295228-48295247 | MS.gene24044:CDS | 45.0% | |
| CTAACTGAGGTTCGGAAGAA+GGG | - | chr1.3:48296716-48296735 | MS.gene24044:intron | 45.0% | |
| GAACAAAGAAGCAAGCAGGT+GGG | + | chr1.3:48293783-48293802 | None:intergenic | 45.0% | |
| GAGACTTTGCATTCATCTCC+GGG | + | chr1.3:48294773-48294792 | None:intergenic | 45.0% | |
| GGCGACAATTGAAACAGAAG+CGG | - | chr1.3:48295975-48295994 | MS.gene24044:CDS | 45.0% | |
| GGGGTGCAATTAGAAGAACT+GGG | + | chr1.3:48293605-48293624 | None:intergenic | 45.0% | |
| GGTAGGGTCAATGTTGTTCA+TGG | - | chr1.3:48295673-48295692 | MS.gene24044:CDS | 45.0% | |
| GTTATCACCGGATAAGACCA+TGG | - | chr1.3:48295597-48295616 | MS.gene24044:CDS | 45.0% | |
| TCAGGCAATACCGAAGAAGT+AGG | + | chr1.3:48294719-48294738 | None:intergenic | 45.0% | |
| TCCTCCATCAGTCATTTCCA+AGG | + | chr1.3:48295818-48295837 | None:intergenic | 45.0% | |
| TCTTCATCTGAACGCTTGAG+AGG | + | chr1.3:48294917-48294936 | None:intergenic | 45.0% | |
| TGGAGTCTTGCAATTCTCTG+GGG | + | chr1.3:48294747-48294766 | None:intergenic | 45.0% | |
| TGTTTCATTGCTACCCCTGA+TGG | - | chr1.3:48294381-48294400 | MS.gene24044:intron | 45.0% | |
| TTACTTTGTGGAAGAGACGC+CGG | + | chr1.3:48293729-48293748 | None:intergenic | 45.0% | |
| TTCAAATGTTGTCGCAGCTG+TGG | - | chr1.3:48295552-48295571 | MS.gene24044:CDS | 45.0% | |
| TTCTTCGGTATTGCCTGAAG+AGG | - | chr1.3:48294721-48294740 | MS.gene24044:intron | 45.0% | |
| TTGAGAGGATCTCCATATGC+AGG | + | chr1.3:48295315-48295334 | None:intergenic | 45.0% | |
| TTTCTGTAATCTCACGGTCC+TGG | + | chr1.3:48296515-48296534 | None:intergenic | 45.0% | |
| ! | AGAAGAAGAAGAAGGTGTGG+GGG | + | chr1.3:48293624-48293643 | None:intergenic | 45.0% |
| ! | ATGATTTTCGACGGCCTTTG+AGG | + | chr1.3:48294951-48294970 | None:intergenic | 45.0% |
| ! | CAATGACTCTGGAGAAACTG+TGG | + | chr1.3:48296100-48296119 | None:intergenic | 45.0% |
| ! | GCAGAGATCTGGTCTTTATC+TGG | + | chr1.3:48295787-48295806 | None:intergenic | 45.0% |
| !! | ACCAGAAACCGGTACTGATT+CGG | - | chr1.3:48294507-48294526 | MS.gene24044:intron | 45.0% |
| !! | AGTGGGGTTGATATTGCTTG+TGG | - | chr1.3:48294803-48294822 | MS.gene24044:CDS | 45.0% |
| !! | ATGTTGTTCATGGTAGTGGC+GGG | - | chr1.3:48295683-48295702 | MS.gene24044:CDS | 45.0% |
| !! | GGATAATGGTTTTACTCCCC+AGG | - | chr1.3:48294297-48294316 | MS.gene24044:CDS | 45.0% |
| !! | TAGCATTGGCTGAGAAGTGT+TGG | + | chr1.3:48296278-48296297 | None:intergenic | 45.0% |
| !! | TGATTCGGGCAATGCTGTTT+TGG | - | chr1.3:48294522-48294541 | MS.gene24044:intron | 45.0% |
| AACCACCGTTTAGCCATCTC+CGG | - | chr1.3:48293707-48293726 | MS.gene24044:intron | 50.0% | |
| AAGCAGCATCCTACATCGAG+AGG | - | chr1.3:48294890-48294909 | MS.gene24044:CDS | 50.0% | |
| AGAGCAGAGCTCTACCTTGA+AGG | - | chr1.3:48295347-48295366 | MS.gene24044:intron | 50.0% | |
| AGAGCCAAGCTCTACCTCAA+AGG | - | chr1.3:48294934-48294953 | MS.gene24044:CDS | 50.0% | |
| AGCAGGTTGCTTCTTCTGGT+AGG | + | chr1.3:48295743-48295762 | None:intergenic | 50.0% | |
| AGCATTGCCCGAATCAGTAC+CGG | + | chr1.3:48294518-48294537 | None:intergenic | 50.0% | |
| AGTCATTTCCAAGGCTGCTG+AGG | + | chr1.3:48295809-48295828 | None:intergenic | 50.0% | |
| CAGAAGAAGCAACCTGCTAC+TGG | - | chr1.3:48295745-48295764 | MS.gene24044:intron | 50.0% | |
| CAGAAGAAGCAGCCTGCATA+TGG | - | chr1.3:48295300-48295319 | MS.gene24044:intron | 50.0% | |
| CAGTAGCAGGTTGCTTCTTC+TGG | + | chr1.3:48295747-48295766 | None:intergenic | 50.0% | |
| CATATGCAGGCTGCTTCTTC+TGG | + | chr1.3:48295302-48295321 | None:intergenic | 50.0% | |
| CCTAACTGAGGTTCGGAAGA+AGG | - | chr1.3:48296715-48296734 | MS.gene24044:intron | 50.0% | |
| CCTTCTTCCGAACCTCAGTT+AGG | + | chr1.3:48296718-48296737 | None:intergenic | 50.0% | |
| GACCATGGGAGATCGCAATA+AGG | - | chr1.3:48295612-48295631 | MS.gene24044:CDS | 50.0% | |
| GAGCTCTACCTTGAAGGTTG+TGG | - | chr1.3:48295353-48295372 | MS.gene24044:intron | 50.0% | |
| GCAGCCTTGGAAATGACTGA+TGG | - | chr1.3:48295811-48295830 | MS.gene24044:intron | 50.0% | |
| GCCTTGGAAATGACTGATGG+AGG | - | chr1.3:48295814-48295833 | MS.gene24044:intron | 50.0% | |
| GGAAATGACTGATGGAGGAC+TGG | - | chr1.3:48295819-48295838 | MS.gene24044:intron | 50.0% | |
| GGCACTCCTCAAAGATGAAC+GGG | - | chr1.3:48295633-48295652 | MS.gene24044:CDS | 50.0% | |
| GGCCGTCGAAAATCATGATC+CGG | - | chr1.3:48294955-48294974 | MS.gene24044:CDS | 50.0% | |
| GTAGAGCTCTGCTCTTTCTC+TGG | + | chr1.3:48295342-48295361 | None:intergenic | 50.0% | |
| GTCAACGATGTTCATGGCAG+TGG | - | chr1.3:48295234-48295253 | MS.gene24044:CDS | 50.0% | |
| GTTTCCCTTGAGACTGTCGA+TGG | - | chr1.3:48294229-48294248 | MS.gene24044:intron | 50.0% | |
| TCTCTCGTGACCAAAGACGT+AGG | + | chr1.3:48295159-48295178 | None:intergenic | 50.0% | |
| TGAGGTTCGGAAGAAGGGTA+GGG | - | chr1.3:48296721-48296740 | MS.gene24044:intron | 50.0% | |
| TGGCCGGTTGCATAGTACTA+AGG | - | chr1.3:48295272-48295291 | MS.gene24044:CDS | 50.0% | |
| TGTAATCTCACGGTCCTGGA+CGG | + | chr1.3:48296511-48296530 | None:intergenic | 50.0% | |
| TTGAGAGGACCTCTCGATGT+AGG | + | chr1.3:48294902-48294921 | None:intergenic | 50.0% | |
| TTGCATTCATCTCCGGGGAA+TGG | + | chr1.3:48294767-48294786 | None:intergenic | 50.0% | |
| ! | CTCGATGTAGGATGCTGCTT+CGG | + | chr1.3:48294890-48294909 | None:intergenic | 50.0% |
| ! | GGGGGTGCAATTAGAAGAAC+TGG | + | chr1.3:48293606-48293625 | None:intergenic | 50.0% |
| ! | TGCCTTATTGCGATCTCCCA+TGG | + | chr1.3:48295617-48295636 | None:intergenic | 50.0% |
| ! | TTGCGCCAAAACTCTAAGGG+AGG | + | chr1.3:48296392-48296411 | None:intergenic | 50.0% |
| ! | TTGTTTTCCTCTCCAAGCGC+CGG | + | chr1.3:48297229-48297248 | None:intergenic | 50.0% |
| !! | ATTCAGGGAAGAAGCGCTTC+GGG | - | chr1.3:48294168-48294187 | MS.gene24044:intron | 50.0% |
| !! | CCAGAAACCGGTACTGATTC+GGG | - | chr1.3:48294508-48294527 | MS.gene24044:intron | 50.0% |
| !! | CGATCTCCCATGGTCTTATC+CGG | + | chr1.3:48295607-48295626 | None:intergenic | 50.0% |
| !! | GATTCAGGGAAGAAGCGCTT+CGG | - | chr1.3:48294167-48294186 | MS.gene24044:intron | 50.0% |
| ACGATGTTCATGGCAGTGGC+CGG | - | chr1.3:48295238-48295257 | MS.gene24044:CDS | 55.0% | |
| AGACGCCGGAGATGGCTAAA+CGG | + | chr1.3:48293715-48293734 | None:intergenic | 55.0% | |
| CTGAGGTTCGGAAGAAGGGT+AGG | - | chr1.3:48296720-48296739 | MS.gene24044:intron | 55.0% | |
| GAGGCTCTTCATCATTGGGC+AGG | - | chr1.3:48296568-48296587 | MS.gene24044:CDS | 55.0% | |
| GTTGCAGGATCTCCAGTAGC+AGG | + | chr1.3:48295760-48295779 | None:intergenic | 55.0% | |
| TGTCACAAATCTCCGGCGCT+TGG | - | chr1.3:48297214-48297233 | MS.gene24044:CDS | 55.0% | |
| !! | ACGGCCTTTGAGGTAGAGCT+TGG | + | chr1.3:48294941-48294960 | None:intergenic | 55.0% |
| !! | CAATTCTCTGGGGCCTCTTC+AGG | + | chr1.3:48294737-48294756 | None:intergenic | 55.0% |
| !! | CCCGAATCAGTACCGGTTTC+TGG | + | chr1.3:48294511-48294530 | None:intergenic | 55.0% |
| ACCGGCCACTACGTCTAGTC+CGG | + | chr1.3:48295260-48295279 | None:intergenic | 60.0% | |
| AGGCTGCTGAGGCAGAGATC+TGG | + | chr1.3:48295798-48295817 | None:intergenic | 60.0% | |
| CAAATCTCCGGCGCTTGGAG+AGG | - | chr1.3:48297219-48297238 | MS.gene24044:CDS | 60.0% | |
| GATCTCTGCCTCAGCAGCCT+TGG | - | chr1.3:48295798-48295817 | MS.gene24044:intron | 60.0% | |
| GCGGGAATAGACGTAGTGCC+CGG | - | chr1.3:48295701-48295720 | MS.gene24044:CDS | 60.0% | |
| TGTGGAAGAGACGCCGGAGA+TGG | + | chr1.3:48293723-48293742 | None:intergenic | 60.0% | |
| ! | AGTGGCCGGACTAGACGTAG+TGG | - | chr1.3:48295252-48295271 | MS.gene24044:CDS | 60.0% |
| CGCCGGAGATGGCTAAACGG+TGG | + | chr1.3:48293712-48293731 | None:intergenic | 65.0% | |
| ! | GCCGGACTAGACGTAGTGGC+CGG | - | chr1.3:48295256-48295275 | MS.gene24044:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48293587 | 48297292 | 48293587 | ID=MS.gene24044 |
| chr1.3 | mRNA | 48293587 | 48297292 | 48293587 | ID=MS.gene24044.t1;Parent=MS.gene24044 |
| chr1.3 | exon | 48297135 | 48297292 | 48297135 | ID=MS.gene24044.t1.exon1;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48297135 | 48297292 | 48297135 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48296561 | 48296705 | 48296561 | ID=MS.gene24044.t1.exon2;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48296561 | 48296705 | 48296561 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48296296 | 48296443 | 48296296 | ID=MS.gene24044.t1.exon3;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48296296 | 48296443 | 48296296 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48295848 | 48296180 | 48295848 | ID=MS.gene24044.t1.exon4;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48295848 | 48296180 | 48295848 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48295435 | 48295740 | 48295435 | ID=MS.gene24044.t1.exon5;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48295435 | 48295740 | 48295435 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48294738 | 48295310 | 48294738 | ID=MS.gene24044.t1.exon6;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48294738 | 48295310 | 48294738 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48294446 | 48294504 | 48294446 | ID=MS.gene24044.t1.exon7;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48294446 | 48294504 | 48294446 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48294290 | 48294363 | 48294290 | ID=MS.gene24044.t1.exon8;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48294290 | 48294363 | 48294290 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| chr1.3 | exon | 48293587 | 48293716 | 48293587 | ID=MS.gene24044.t1.exon9;Parent=MS.gene24044.t1 |
| chr1.3 | CDS | 48293587 | 48293716 | 48293587 | ID=cds.MS.gene24044.t1;Parent=MS.gene24044.t1 |
| Gene Sequence |
| Protein sequence |
