AlfalfaGEDB | MS.gene24130

M. sativa cultivar XinJiangDaYe / MS.gene24130

KEGG: -
GO: GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24130.t1	XP_003589511.1	97.2	1020	29	0	1	1020	1	1020	0.00E+00	1840.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24130.t1	G7I7R0	97.2	1020	29	0	1	1020	1	1020	0.0e+00	1840.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24130.t1	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24130.t1	MTR_1g025500	97.549	1020	25	0	1	1020	1	1020	0.0	2041
MS.gene24130.t1	MTR_6g007787	29.783	507	227	28	599	1020	1127	1589	1.18e-16	86.3
MS.gene24130.t1	MTR_6g007787	35.333	150	89	5	1	148	254	397	1.43e-14	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24130.t1	AT4G24200	39.316	585	284	25	472	1020	451	1000	2.20e-70	254
MS.gene24130.t1	AT4G24200	39.316	585	284	25	472	1020	451	1000	2.20e-70	254
MS.gene24130.t1	AT3G48060	27.976	504	237	25	599	1007	1136	1608	1.22e-15	82.8
MS.gene24130.t1	AT3G48060	27.976	504	237	25	599	1007	1135	1607	1.37e-15	82.8
MS.gene24130.t1	AT3G48060	27.976	504	237	25	599	1007	1135	1607	1.37e-15	82.8
MS.gene24130.t1	AT3G48050	27.634	503	242	25	599	1007	1133	1607	1.61e-15	82.4
MS.gene24130.t1	AT3G48050	31.788	151	90	5	5	148	263	407	6.45e-11	67.4
MS.gene24130.t1	AT3G48050	27.634	503	242	25	599	1007	1133	1607	1.61e-15	82.4
MS.gene24130.t1	AT3G48050	31.788	151	90	5	5	148	263	407	6.45e-11	67.4

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Find 253 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATCAGAGCCATTTG+AGG	0.484474	1.2:-556284	None:intergenic
AAACAAATTGGTGAATCTTC+AGG	0.355173	1.2:+557183	MS.gene24130:CDS
AAACTGATTTACTGGACCAA+GGG	0.555008	1.2:+557436	MS.gene24130:CDS
AAACTTCCTTGTTTCGGTAC+AGG	0.423549	1.2:-555881	None:intergenic
AAAGAAGATTCAGGCACTAT+TGG	0.361886	1.2:-556067	None:intergenic
AAAGCTCAGAAGGTGGAACG+AGG	0.698086	1.2:+556617	MS.gene24130:CDS
AAAGCTTCAGTGGAGGAAGA+AGG	0.562681	1.2:+556229	MS.gene24130:CDS
AAAGGCCCTCCAGAGAAATT+AGG	0.368746	1.2:+555971	MS.gene24130:CDS
AAAGTGAATTGACATCGTCT+GGG	0.640193	1.2:+555846	MS.gene24130:CDS
AAATCAATGTTTCGAACTGA+CGG	0.562322	1.2:-557393	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATTGGTGAATCTTC+AGG	+	chr1.2:557183-557202	MS.gene24130:CDS	30.0%
AAATCAATGTTTCGAACTGA+CGG	-	chr1.2:557396-557415	None:intergenic	30.0%
AAATGACTTATCAATGAAGG+AGG	+	chr1.2:555931-555950	MS.gene24130:CDS	30.0%
AACTCTTGTCAATAATGTTG+GGG	-	chr1.2:556333-556352	None:intergenic	30.0%
AAGAAAATCTTGCCTTTGTT+TGG	-	chr1.2:557121-557140	None:intergenic	30.0%
AAGTCAAAACAGTAGTAAGA+TGG	-	chr1.2:555799-555818	None:intergenic	30.0%
AATTGAACTTGACTATGGTA+TGG	+	chr1.2:556522-556541	MS.gene24130:CDS	30.0%
ACTCTGATATTTCCAAACAA+AGG	+	chr1.2:557106-557125	MS.gene24130:CDS	30.0%
AGAACTCTTGTCAATAATGT+TGG	-	chr1.2:556335-556354	None:intergenic	30.0%
GAACTCTTGTCAATAATGTT+GGG	-	chr1.2:556334-556353	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	555074	558136	555074	ID=MS.gene24130
chr1.2	mRNA	555074	558136	555074	ID=MS.gene24130.t1;Parent=MS.gene24130
chr1.2	exon	555074	558136	555074	ID=MS.gene24130.t1.exon1;Parent=MS.gene24130.t1
chr1.2	CDS	555074	558136	555074	ID=cds.MS.gene24130.t1;Parent=MS.gene24130.t1

Gene Sequence

>MS.gene24130

ATGACTCTTGAAGACTTCTTTACTTTGACTGAGATGAAAGATGGGCTCACAACCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTGATGAAGAAGGAGCAAGACAGTATTGTGAAGAACACTGGCGATGCAATAAGACAATGGGCTACTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGACCTTTTTATTCAATTAGAAGGACCGTGGTTCATTGATAGATGGTTAAATGATGCTCAAAAATTGGGTGGTGGTACAAATGATAGTGTCATGGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTATATCAAAACAGTGAGAAGCTAATTTCATCAGGAATGTGGGCCACTGTAAGTAACCTTCTTGGTCATCACAGCTCCAAGGTTCAAGATAGAGCAAGAGCACTATTTGACAAGTGGAAAGAAGTTGGAAATGGAGATGCTAAGTCTCATGATATGGATACTGGTCAAAGAAACCATATGATTGATAAGAATCTCAAGGAGGAAGGCCAGTTGTCTTCAGTGAACGGGGCTAGTAATGACAATGTTCATGTGTTGCGACTTGAAGGGGGTGAGAAGTCTATACTGAGAAGCTCAGATACTCAGATACCAGATAAGGCTGCTAATGTTAAGAAAGAGAGTTCTGACAATGCACATCAGTCCTCTGCAAGTTTGAATTGTGAAGAGCTCAAAGAGAGATCAAACCATCTTACTACTGTTTTGACTTCTGTTCAAGAAAATGTTTCCTCAAGTGAAAGTGAATTGACATCGTCTGGGATCTGCAACTTACCTGTACCGAAACAAGGAAGTTTCAAAGATCAGCCTGATGATTTACAGTTAAATGACTTATCAATGAAGGAGGAGCAGGAACTAAATGATAAAGGCCCTCCAGAGAAATTAGGAGCACCAATAAATCCTAAGCCTGAATCTGTTTCTGTTGGTGCTAGTGAAGCACAAGTTAAGCCTGTGCCTGCACCAATAGTGCCTGAATCTTCTTTGGAACATGATGTCAAAAGCAGTGAAGTTGGTATTTGTGATAAAGTAATAGTTTCTGGTAGCATGAAAACATCTGCCTCTGATAAAATGAGTGTGGTGGATGGTGCCAGAGCCACGGATTCTAGCAATCCACAACTATCTAAAGCTTCAGTGGAGGAAGAAGGCAACAGCCAAGTTTCTAATCACGGCGACGATACCTCAAATGGCTCTGATTCTTTTAAACAAAGAAAAGATCCGACAAGCCCCAACATTATTGACAAGAGTTCTGACATGGAACTTGATTATGGTATTGTTGATGCTTTAGATGTTGCTCGACAAGTTGCTGAGGAAGTTACTCAAGTTTCTGATCAAGATAATGATACCTCAAATAGTTCTGATTCCTTCAAACAGAGCAAAGTTTCCAGAAGCGCTAACATTGTGACCAAGAATTCTGAAATTGAACTTGACTATGGTATGGTTGATGCATTACAAGTCGCTCGACAAGTTGCTGAGGAAGTTGAGAGAGAAATCAATAACTCTTCTTCAGAGAAAAGCTCAGAAGGTGGAACGAGGCAAGCTGGCAGCGCGGAATCTGTTGGTAAAAATGATGACCTTGCATGTGCCCTACCCGAGGTGTCATCCAGACAAAGCAACTCCGCTGAAGCATGTCCTGAGGAAAGGCATATGAGTGTTTCAGATGATGTTGTAGCTGAGCCAGAATGCATCCCTGACTTGGAGTCTTCGCAGTTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATATGAATGTTTCTGCAAATACCATATCTACAACACCGATACCTGTTGTCTCTGCTTCAAAACCTGCACAGACTTCAGGATTGCCAACAGCCCCTCTACAGTTTGAAGGAACGCTTGGATGGAAAGGGTCCGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATGCTGATAATCAGAAGAATGTTTCTGCTGGTGGGAACTCTGATATTTCCAAACAAAGGCAAGATTTTCTTGATTTTGATCTGAATGTGGCTGGGGGTGAAGATGAACTGGCAAAACAAATTGGTGAATCTTCAGGCTTGCCTTCTGGGCAATCATCAGTGGAACATAGCCCTAAAAGATCAAAGAGATTTGAATTAGATTTGAATAGTATTGGTGATGATGGTGATACCCAACCTTCAGATCAGAGGACGGAGGGGCAGCTCTTCTTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCATCATCGTCGTCAATGCAGCCGTCAGTTCGAAACATTGATTTGAATGATAGACCGTACTTTCAAACTGATTTACTGGACCAAGGGCCTACCAAATCTTCTTCAAGTATTGAAGTATATGGACTTTCCAAATCAGATGCTCCTGCAATATCGATTTTGGGGGCCAAGGTGGAAATCGGTAGAAAAGAGCATGTTCCTCAAATTTGGTCTTTGCCAAATGGCAAGGCTGTTGAGCCTGCAGTAGATCTTACAATGATGCCAGGAGCTGGTGGCGTTTCAGGGATGGGCCCTGCGGTATCCTACAATCATTCAACTTTTTTGGGATATAATGGACTGACATCAATGCCCCCTTTGTCTTTTTCGCCAGCCGCGTATGGATCAGGTGGTACAGTTCCTTACATGGTGGACTCAAGAGGAGCTCCGGTAGTACCTCAAGTTGGGGGATCTTCCTCAAATGTCCTATCATCTTACGCTCAGCCCCCATATATTATGAGCATGGCTGGTACACAGCTTGGTTTAAACGGTGTTGGACCTTCCCGTCCCAACTTTGATCTTAACTCGGGTTTCATGATTGATGGCGGGAATAGAGATGCATTGACTGCAAGGCCGTTTTTCTTTCCTGGTCAGAACAGAGCTATGGAAGATAGGACCCTTCAACAATCCTCAAGTTCAGGGGTTGGTGGCAAAAGAAAAGAACCAGATGGTAGCGGTTGGGAAACATATCCATTTGGCTACAAACATCAGCAACAACCTCCGTGGAAGTAG

Protein sequence

>MS.gene24130.t1

MTLEDFFTLTEMKDGLTTPSRVQELVSVMKKEQDSIVKNTGDAIRQWATVASTIAATENKDCLDLFIQLEGPWFIDRWLNDAQKLGGGTNDSVMEESITAMLRAVEKLYQNSEKLISSGMWATVSNLLGHHSSKVQDRARALFDKWKEVGNGDAKSHDMDTGQRNHMIDKNLKEEGQLSSVNGASNDNVHVLRLEGGEKSILRSSDTQIPDKAANVKKESSDNAHQSSASLNCEELKERSNHLTTVLTSVQENVSSSESELTSSGICNLPVPKQGSFKDQPDDLQLNDLSMKEEQELNDKGPPEKLGAPINPKPESVSVGASEAQVKPVPAPIVPESSLEHDVKSSEVGICDKVIVSGSMKTSASDKMSVVDGARATDSSNPQLSKASVEEEGNSQVSNHGDDTSNGSDSFKQRKDPTSPNIIDKSSDMELDYGIVDALDVARQVAEEVTQVSDQDNDTSNSSDSFKQSKVSRSANIVTKNSEIELDYGMVDALQVARQVAEEVEREINNSSSEKSSEGGTRQAGSAESVGKNDDLACALPEVSSRQSNSAEACPEERHMSVSDDVVAEPECIPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDMNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNADNQKNVSAGGNSDISKQRQDFLDFDLNVAGGEDELAKQIGESSGLPSGQSSVEHSPKRSKRFELDLNSIGDDGDTQPSDQRTEGQLFFGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLLDQGPTKSSSSIEVYGLSKSDAPAISILGAKVEIGRKEHVPQIWSLPNGKAVEPAVDLTMMPGAGGVSGMGPAVSYNHSTFLGYNGLTSMPPLSFSPAAYGSGGTVPYMVDSRGAPVVPQVGGSSSNVLSSYAQPPYIMSMAGTQLGLNGVGPSRPNFDLNSGFMIDGGNRDALTARPFFFPGQNRAMEDRTLQQSSSSGVGGKRKEPDGSGWETYPFGYKHQQQPPWK