Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24164.t1 | AFK49400.1 | 84.7 | 300 | 29 | 2 | 8 | 294 | 69 | 364 | 9.10E-124 | 453.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24164.t1 | G7I760 | 84.7 | 300 | 29 | 2 | 8 | 294 | 69 | 364 | 6.6e-124 | 453.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24164.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24164.t1 | MTR_1g024980 | 90.667 | 300 | 11 | 2 | 8 | 294 | 69 | 364 | 0.0 | 538 |
| MS.gene24164.t1 | MTR_3g072920 | 54.661 | 236 | 77 | 7 | 87 | 293 | 183 | 417 | 1.46e-77 | 244 |
| MS.gene24164.t1 | MTR_4g081420 | 45.918 | 196 | 83 | 3 | 119 | 291 | 205 | 400 | 7.12e-43 | 153 |
| MS.gene24164.t1 | MTR_3g463270 | 40.500 | 200 | 91 | 7 | 105 | 278 | 139 | 336 | 6.23e-35 | 131 |
| MS.gene24164.t1 | MTR_2g010860 | 38.743 | 191 | 91 | 5 | 119 | 284 | 145 | 334 | 1.98e-28 | 113 |
| MS.gene24164.t1 | MTR_2g010870 | 35.176 | 199 | 95 | 5 | 119 | 284 | 116 | 313 | 1.94e-24 | 102 |
| MS.gene24164.t1 | MTR_4g101450 | 41.045 | 134 | 75 | 3 | 152 | 282 | 106 | 238 | 1.47e-18 | 84.3 |
| MS.gene24164.t1 | MTR_5g012220 | 39.869 | 153 | 74 | 6 | 141 | 282 | 105 | 250 | 5.84e-18 | 82.8 |
| MS.gene24164.t1 | MTR_5g094440 | 28.477 | 151 | 92 | 4 | 142 | 276 | 72 | 222 | 4.65e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24164.t1 | AT1G75710 | 60.000 | 310 | 93 | 8 | 1 | 281 | 86 | 393 | 5.87e-108 | 323 |
| MS.gene24164.t1 | AT4G27240 | 37.654 | 324 | 141 | 10 | 15 | 294 | 84 | 390 | 1.77e-45 | 160 |
| MS.gene24164.t1 | AT4G27240 | 37.654 | 324 | 141 | 10 | 15 | 294 | 84 | 390 | 1.94e-45 | 160 |
| MS.gene24164.t1 | AT5G54630 | 44.390 | 205 | 79 | 5 | 119 | 294 | 233 | 431 | 2.70e-42 | 152 |
| MS.gene24164.t1 | AT2G29660 | 40.000 | 190 | 82 | 5 | 119 | 278 | 128 | 315 | 8.75e-33 | 125 |
| MS.gene24164.t1 | AT1G11490 | 34.615 | 208 | 100 | 8 | 119 | 298 | 129 | 328 | 4.03e-20 | 90.1 |
| MS.gene24164.t1 | AT1G11490 | 34.615 | 208 | 100 | 8 | 119 | 298 | 129 | 328 | 4.03e-20 | 90.1 |
| MS.gene24164.t1 | AT4G12450 | 34.320 | 169 | 91 | 4 | 136 | 290 | 91 | 253 | 1.88e-17 | 81.3 |
| MS.gene24164.t1 | AT4G22560 | 37.888 | 161 | 89 | 5 | 141 | 296 | 92 | 246 | 4.60e-17 | 80.1 |
| MS.gene24164.t1 | AT1G62520 | 37.671 | 146 | 83 | 4 | 142 | 283 | 100 | 241 | 9.41e-16 | 76.6 |
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1.2:+972848 | None:intergenic |
| ACTCGCTCTGCATCATGTTC+TGG | 0.262275 | 1.2:-973690 | MS.gene24164:CDS |
| CAACGACATAATGTACTTCT+AGG | 0.266580 | 1.2:+972893 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1.2:-973626 | MS.gene24164:CDS |
| TCCGCCCTTTGCGCCGTGCC+TGG | 0.315948 | 1.2:-970447 | MS.gene24164:CDS |
| AGCTTCAGAGATGTTGTTCA+TGG | 0.341820 | 1.2:-973828 | MS.gene24164:CDS |
| TTGGTGTGCCGCGTGATTGC+CGG | 0.354951 | 1.2:-970306 | MS.gene24164:CDS |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1.2:-973772 | MS.gene24164:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1.2:+970287 | None:intergenic |
| CATAATGTACTTCTAGGAAT+TGG | 0.404362 | 1.2:+972899 | None:intergenic |
| CAGTTGGAGAAGATTCTAGA+AGG | 0.406367 | 1.2:-970335 | MS.gene24164:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1.2:-973615 | MS.gene24164:CDS |
| CTCGCTCTGCATCATGTTCT+GGG | 0.411037 | 1.2:-973689 | MS.gene24164:CDS |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1.2:+972849 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1.2:-972852 | MS.gene24164:CDS |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1.2:-970720 | MS.gene24164:CDS |
| GCGGAGTTTGCAACATAATC+CGG | 0.437889 | 1.2:-970422 | MS.gene24164:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1.2:-970736 | MS.gene24164:intron |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1.2:+970711 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1.2:-970735 | MS.gene24164:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1.2:+970592 | None:intergenic |
| TCGTGGGATGTTAGATTCGA+TGG | 0.447036 | 1.2:+967129 | None:intergenic |
| CGCATCCAGGCACGGCGCAA+AGG | 0.455208 | 1.2:+970442 | None:intergenic |
| CTTTGCGCCGTGCCTGGATG+CGG | 0.466713 | 1.2:-970441 | MS.gene24164:CDS |
| TTCGATGGGAACTTATACAT+TGG | 0.470343 | 1.2:+967144 | None:intergenic |
| AGGCACGGCGCAAAGGGCGG+AGG | 0.470822 | 1.2:+970449 | None:intergenic |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1.2:+973564 | None:intergenic |
| GCATCCAGGCACGGCGCAAA+GGG | 0.472172 | 1.2:+970443 | None:intergenic |
| AACATCTCTGAAGCTACAAA+TGG | 0.481428 | 1.2:+973836 | None:intergenic |
| GGTGGTGTCAGAGGAGGAAA+TGG | 0.486566 | 1.2:-970250 | MS.gene24164:intron |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1.2:-973771 | MS.gene24164:CDS |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1.2:-970601 | MS.gene24164:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1.2:+970557 | None:intergenic |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1.2:+973565 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1.2:-970283 | MS.gene24164:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1.2:+970556 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1.2:-973578 | MS.gene24164:intron |
| TTATTACTGTCCCAGACACT+TGG | 0.502228 | 1.2:-967186 | MS.gene24164:intron |
| TGGTGTGCCGCGTGATTGCC+GGG | 0.506413 | 1.2:-970305 | MS.gene24164:CDS |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1.2:-972824 | MS.gene24164:intron |
| CGTGGGATGTTAGATTCGAT+GGG | 0.516343 | 1.2:+967130 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1.2:-973806 | MS.gene24164:CDS |
| TCCAGGCACGGCGCAAAGGG+CGG | 0.528114 | 1.2:+970446 | None:intergenic |
| CTTCTCCAACTGAATTGTCA+TGG | 0.528807 | 1.2:+970346 | None:intergenic |
| CTACATCTTGACTAATACGT+GGG | 0.532590 | 1.2:+976940 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1.2:-970279 | MS.gene24164:CDS |
| AGGTGCACCGGTGGTGTCAG+AGG | 0.541723 | 1.2:-970259 | MS.gene24164:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1.2:+970613 | None:intergenic |
| TTCTCCAACTGAATTGTCAT+GGG | 0.545184 | 1.2:+970347 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.553814 | 1.2:+970429 | None:intergenic |
| GATGATGATGAAGCAGTGAC+AGG | 0.553941 | 1.2:+973720 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1.2:-973669 | MS.gene24164:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1.2:-970683 | MS.gene24164:CDS |
| GGCCCTACCACTACTAGCAT+TGG | 0.555926 | 1.2:+970368 | None:intergenic |
| AGATTCTAGAAGGGCAATGT+TGG | 0.558092 | 1.2:-970325 | MS.gene24164:CDS |
| AGGGCCCATGACAATTCAGT+TGG | 0.558945 | 1.2:-970351 | MS.gene24164:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1.2:+973659 | None:intergenic |
| GCAAACTCCGCATCCAGGCA+CGG | 0.564278 | 1.2:+970434 | None:intergenic |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1.2:+973768 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1.2:-970268 | MS.gene24164:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.575088 | 1.2:-970370 | MS.gene24164:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1.2:-970647 | MS.gene24164:CDS |
| AGACCAATGCTAGTAGTGGT+AGG | 0.580999 | 1.2:-970371 | MS.gene24164:CDS |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1.2:+970645 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1.2:-970727 | MS.gene24164:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1.2:-970474 | MS.gene24164:CDS |
| TCACTTTCCCGGCAATCACG+CGG | 0.600425 | 1.2:+970298 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1.2:-970271 | MS.gene24164:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1.2:-970483 | MS.gene24164:CDS |
| ATTTCCTCCTCTGACACCAC+CGG | 0.605158 | 1.2:+970252 | None:intergenic |
| AGTTGGAGAAGATTCTAGAA+GGG | 0.607565 | 1.2:-970334 | MS.gene24164:CDS |
| TGCACCGGTGGTGTCAGAGG+AGG | 0.610517 | 1.2:-970256 | MS.gene24164:CDS |
| ACATCATCATCATCTTCAAG+AGG | 0.620776 | 1.2:-973639 | MS.gene24164:CDS |
| GTGAAGACCAATGCTAGTAG+TGG | 0.632554 | 1.2:-970375 | MS.gene24164:CDS |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1.2:-970286 | MS.gene24164:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1.2:-973675 | MS.gene24164:CDS |
| TCTACATCTTGACTAATACG+TGG | 0.669784 | 1.2:+976939 | None:intergenic |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.670291 | 1.2:-970289 | MS.gene24164:CDS |
| GTTTGCAACATAATCCGGCA+CGG | 0.681455 | 1.2:-970417 | MS.gene24164:CDS |
| TACATCTTGACTAATACGTG+GGG | 0.691051 | 1.2:+976941 | None:intergenic |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1.2:-970608 | MS.gene24164:CDS |
| TTATGTCGTTGTGATAAGTG+TGG | 0.706591 | 1.2:-972881 | MS.gene24164:CDS |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1.2:-970586 | MS.gene24164:CDS |
| TCGTTGTGATAAGTGTGGAG+AGG | 0.731697 | 1.2:-972876 | MS.gene24164:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1.2:-973672 | MS.gene24164:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 967095 | 976979 | 967095 | ID=MS.gene24164 |
| chr1.2 | mRNA | 967095 | 976979 | 967095 | ID=MS.gene24164.t1;Parent=MS.gene24164 |
| chr1.2 | exon | 976939 | 976979 | 976939 | ID=MS.gene24164.t1.exon1;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 976939 | 976979 | 976939 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| chr1.2 | exon | 973579 | 973860 | 973579 | ID=MS.gene24164.t1.exon2;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 973579 | 973860 | 973579 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| chr1.2 | exon | 972825 | 972925 | 972825 | ID=MS.gene24164.t1.exon3;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 972825 | 972925 | 972825 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| chr1.2 | exon | 970546 | 970747 | 970546 | ID=MS.gene24164.t1.exon4;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 970546 | 970747 | 970546 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| chr1.2 | exon | 970251 | 970506 | 970251 | ID=MS.gene24164.t1.exon5;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 970251 | 970506 | 970251 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| chr1.2 | exon | 967095 | 967193 | 967095 | ID=MS.gene24164.t1.exon6;Parent=MS.gene24164.t1 |
| chr1.2 | CDS | 967095 | 967193 | 967095 | ID=cds.MS.gene24164.t1;Parent=MS.gene24164.t1 |
| Gene Sequence |
| Protein sequence |