AlfalfaGEDB | MS.gene24194

M. sativa cultivar XinJiangDaYe / MS.gene24194

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24194.t1	XP_003589390.1	96.6	555	17	1	1	553	1	555	3.40E-272	947.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24194.t1	Q04088	40.0	170	98	1	340	509	156	321	1.8e-16	89.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24194.t1	G7I6G4	96.6	555	17	1	1	553	1	555	2.5e-272	947.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24194.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24194.t1	MTR_1g023690	97.477	555	12	1	1	553	1	555	0.0	1105
MS.gene24194.t1	MTR_4g072090	49.174	484	180	18	42	504	41	479	1.62e-110	339
MS.gene24194.t1	MTR_4g072090	48.889	450	162	19	42	469	41	444	4.88e-97	302
MS.gene24194.t1	MTR_6g034945	47.964	221	94	8	301	513	74	281	4.28e-44	159
MS.gene24194.t1	MTR_2g099050	60.000	140	53	2	340	477	175	313	3.57e-41	154
MS.gene24194.t1	MTR_3g094020	54.777	157	67	2	368	521	91	246	2.98e-40	148
MS.gene24194.t1	MTR_5g075390	56.944	144	52	2	340	483	124	257	2.99e-39	147
MS.gene24194.t1	MTR_3g467120	52.486	181	78	4	340	518	138	312	5.03e-39	147
MS.gene24194.t1	MTR_2g090900	51.020	98	44	2	384	479	190	285	2.84e-18	86.7
MS.gene24194.t1	MTR_4g079500	50.000	98	45	2	384	479	193	288	3.23e-18	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24194.t1	AT4G38900	45.028	533	199	25	19	505	27	511	3.14e-101	317
MS.gene24194.t1	AT4G38900	45.028	533	199	25	19	505	27	511	3.14e-101	317
MS.gene24194.t1	AT4G38900	44.527	539	199	26	19	505	27	517	2.38e-98	309
MS.gene24194.t1	AT2G21230	41.649	461	207	15	79	510	74	501	3.67e-81	263
MS.gene24194.t1	AT2G21230	41.649	461	207	15	79	510	74	501	3.67e-81	263
MS.gene24194.t1	AT2G21230	40.899	467	208	16	79	510	74	507	6.02e-78	255
MS.gene24194.t1	AT2G21230	42.195	410	181	14	79	465	74	450	2.04e-73	241
MS.gene24194.t1	AT1G43700	47.549	204	87	6	300	483	89	292	2.76e-42	155
MS.gene24194.t1	AT2G31370	53.529	170	75	1	340	509	156	321	6.92e-41	152
MS.gene24194.t1	AT2G31370	53.529	170	75	1	340	509	156	321	1.75e-40	151

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Find 157 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTTTCTATGGAGGA+TGG	0.538942	1.2:-1409996	MS.gene24194:CDS
AAATGGTGAATTCAGCTCAC+AGG	0.605226	1.2:-1409271	MS.gene24194:CDS
AACTTACATGATAAGGGGAA+GGG	0.538780	1.2:+1410045	None:intergenic
AAGCTGTTCAGATGAGAGGA+GGG	0.600858	1.2:-1409490	MS.gene24194:CDS
AAGGATAGGGACTGTGTTGA+TGG	0.391348	1.2:-1409729	MS.gene24194:CDS
AATCACAAAAGTTCTGGTTT+TGG	0.303027	1.2:-1410230	MS.gene24194:CDS
AATGGAGATATTGCTCCTAG+TGG	0.680673	1.2:-1409447	MS.gene24194:CDS
AATTGGGGATAAGGAGATGA+TGG	0.483937	1.2:+1410161	None:intergenic
ACAAATTCCGATATCCCTAA+AGG	0.542260	1.2:+1409864	None:intergenic
ACACTCGCCTAGCAATTCAA+TGG	0.545737	1.2:-1409331	MS.gene24194:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAGACACGGAAATA+TGG	+	chr1.2:1408692-1408711	None:intergenic	30.0%
AAAGAAAGACACGGAAATAT+GGG	+	chr1.2:1408691-1408710	None:intergenic	30.0%
ACAGGAGATGAAGAAAATAA+TGG	-	chr1.2:1408592-1408611	MS.gene24194:intron	30.0%
ATAAACTGGTATTAGGGTTA+GGG	+	chr1.2:1407656-1407675	None:intergenic	30.0%
ATAGCAGCATACATGATATA+TGG	+	chr1.2:1408975-1408994	None:intergenic	30.0%
ATAGGATTCAATTGAATTGG+GGG	+	chr1.2:1407558-1407577	None:intergenic	30.0%
ATGCTGATAAAGAGATTCAT+AGG	+	chr1.2:1409862-1409881	None:intergenic	30.0%
CAGAAAAAAGTTCATGCATT+TGG	-	chr1.2:1407522-1407541	MS.gene24194:CDS	30.0%
CATAGGATTCAATTGAATTG+GGG	+	chr1.2:1407559-1407578	None:intergenic	30.0%
GCATAGGATTCAATTGAATT+GGG	+	chr1.2:1407560-1407579	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	1407495	1410372	1407495	ID=MS.gene24194
chr1.2	mRNA	1407495	1410372	1407495	ID=MS.gene24194.t1;Parent=MS.gene24194
chr1.2	exon	1409201	1410372	1409201	ID=MS.gene24194.t1.exon1;Parent=MS.gene24194.t1
chr1.2	CDS	1409201	1410372	1409201	ID=cds.MS.gene24194.t1;Parent=MS.gene24194.t1
chr1.2	exon	1408959	1409091	1408959	ID=MS.gene24194.t1.exon2;Parent=MS.gene24194.t1
chr1.2	CDS	1408959	1409091	1408959	ID=cds.MS.gene24194.t1;Parent=MS.gene24194.t1
chr1.2	exon	1408746	1408830	1408746	ID=MS.gene24194.t1.exon3;Parent=MS.gene24194.t1
chr1.2	CDS	1408746	1408830	1408746	ID=cds.MS.gene24194.t1;Parent=MS.gene24194.t1
chr1.2	exon	1407495	1407766	1407495	ID=MS.gene24194.t1.exon4;Parent=MS.gene24194.t1
chr1.2	CDS	1407495	1407766	1407495	ID=cds.MS.gene24194.t1;Parent=MS.gene24194.t1

Gene Sequence

>MS.gene24194

ATGCATGAACGAATGGAGCGTTTTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCATTTTCTTTGCCACCATTGAGTCCCTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATCGGGTTCGAAAGATGTTTCTATGGAGGATGGCTTGGGTTTTGGTGCCCATCATGCACCTTCGCCTAACCGCGGTCATGCTGTTCAGCATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCACCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGCCTCAGCTGGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAATATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGGGTCAAGAGGAGTTCTAATGGAGATATTGCTCCTAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGTAAGAATTGTCTGTTCATTTCCCATATTTCCGTGTCTTTCTTTTGGAAAAAACATGAAAAAGTAAAACTTTAATAATGACTTATCATAAATGTTGAATTCTCTTCTAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCAAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGGTGCGTATCATCTTAGTTGAAATGATGTTCCTTTTTCTTAAGTTTGTGAATTATATTTGATTTCCATATATCATGTATGCTGCTATTAATTCATTCATTCTTTACTTTTTTATTGCACTTGGCTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGGTATGCATGTGCTTATTCCTTTTACTTTATGTTCTAGTTAGCTGATATTTTTCCTTGCAAACTATTTTTTTGGAATTGATAATTGTGTTTTTTTTTTTTGCATAGAAATAACTTGCATATATGATCGTGCTCAAAGATATGTGATTTTCTATATTTAGATGGATTTTATGCGGAATAACACTATTTAGCATATACTGTATGACAAATTTTGGTGTTTGAATATAGTAATTCAAATTTTGGTTTTTGATCCAATCTTGTTCAATGATCTCTGCGCAACTGCACCTTTAAAATCTTCCTGCCTACATAGTACTTTTGGTTTTTGGAACCCAAGTACCGTATTGTACTGAATCTCTTGGTTGCATGTTATAACCTCTTTAAAACTGCATATACAAACTGTTTAAATGTAATATGGTTTTAGACTTCTGTTGAATAGCAACAACAATAACCAAGCCTTAGTCTACCTTATGGGATCAACTTTATAGATCAAATGACGTCATAGTTCTCCATTTTAGTATCATGTATTAAGTTCAGTGATAAACTTTACCTTCAGTGTTGTCAATCACAGCGGAAAGTAGTGGGTTGTTCCAATTCCGCTATGCTACAGTGCTATAGGGCTACTATAGCCGCTATTTGACAGGGGCAATATGCTAAATAGCGTATGACAGAACAATAACAAACAAAAACTATTTATTTAAATTCTGCTATGCTATAGTGTCGGTATTTGACAACATTGTTTACCTATGAATCTCTTTATCAGCATTTTTCAGCACTAGATTTCATTATCAATGCATTATACACTTTAAGTAGCATCATTCTAAGACACCAGCAACATATTTTTTGATCTTGTTTCTACATATCTTCATGCCACCACCATCCCTTCTTCAGAAGCACTGTAATTCCTTGATTTTGTGCTGCAATTGATTATCTTCACTGAACCAAATATTTAGCTATGTATTCATTTGTGTTCTTATTTTCGCAGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA

Protein sequence

>MS.gene24194.t1

MHERMERFDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSESGSKDVSMEDGLGFGAHHAPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTPQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGASSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA