AlfalfaGEDB | MS.gene24218

M. sativa cultivar XinJiangDaYe / MS.gene24218

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24218.t1	XP_003589351.1	88.7	275	29	1	1	275	1	273	1.00E-107	399.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24218.t1	Q9LQZ7	39.6	331	144	8	1	275	1	331	3.8e-47	189.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24218.t1	B7FII1	88.7	275	29	1	1	275	1	273	7.3e-108	399.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene24218.t1	TF	DBB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24218.t1	MTR_1g023260	96.727	275	7	1	1	275	1	273	0.0	548
MS.gene24218.t1	MTR_1g023260	95.735	211	7	1	65	275	57	265	3.81e-146	410
MS.gene24218.t1	MTR_1g023260	98.361	183	3	0	1	183	1	183	6.55e-132	371
MS.gene24218.t1	MTR_3g113070	46.520	273	83	9	1	263	1	220	1.76e-65	204
MS.gene24218.t1	MTR_4g071200	47.005	217	102	4	1	212	1	209	2.91e-61	193
MS.gene24218.t1	MTR_3g117320	48.969	194	88	3	1	183	1	194	1.55e-59	189
MS.gene24218.t1	MTR_4g067320	35.036	274	132	8	1	263	1	239	9.52e-42	144
MS.gene24218.t1	MTR_4g067320	34.909	275	132	8	1	263	1	240	1.45e-41	143
MS.gene24218.t1	MTR_2g073370	39.175	194	92	4	1	171	1	191	7.52e-38	135
MS.gene24218.t1	MTR_2g099010	42.775	173	78	3	1	173	1	152	1.90e-37	132

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24218.t1	AT1G75540	43.275	342	116	13	1	275	1	331	1.10e-71	223
MS.gene24218.t1	AT4G39070	48.276	203	78	3	1	176	1	203	5.47e-52	170
MS.gene24218.t1	AT1G06040	38.406	276	129	10	1	263	1	248	2.99e-44	150
MS.gene24218.t1	AT1G06040	44.199	181	79	4	1	177	1	163	3.56e-40	137
MS.gene24218.t1	AT2G31380	35.185	270	134	10	1	262	1	237	2.33e-38	135
MS.gene24218.t1	AT4G10240	49.612	129	56	2	1	124	1	125	1.17e-36	128
MS.gene24218.t1	AT1G78600	45.890	146	74	3	1	146	1	141	1.31e-36	132
MS.gene24218.t1	AT1G78600	41.520	171	94	4	1	170	1	166	2.21e-36	132
MS.gene24218.t1	AT4G38960	41.406	128	64	3	1	128	1	117	3.86e-23	93.6
MS.gene24218.t1	AT4G38960	41.406	128	64	3	1	128	1	117	3.86e-23	93.6

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Find 62 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGGAGAAAGCAAA+GGG	0.550319	1.2:+1640631	None:intergenic
AAAATCATCAACTTGCCAAC+CGG	0.412069	1.2:+1640672	None:intergenic
AAAGCAGCATCAACAAATCA+AGG	0.524782	1.2:-1640165	MS.gene24218:CDS
AAATCATCAACTTGCCAACC+GGG	0.556383	1.2:+1640673	None:intergenic
AACTTACACAGAAACATGAT+AGG	0.518542	1.2:-1640894	MS.gene24218:CDS
AAGAGCGAGACGGTGGTGTT+TGG	0.393267	1.2:+1641172	None:intergenic
AAGCGAGTTTGTTGGCGTGG+TGG	0.633769	1.2:+1641195	None:intergenic
ACAAATCAAGGTTGAGGTTG+AGG	0.454986	1.2:-1640153	MS.gene24218:CDS
ACATAAGGCGGCTTCATCGG+CGG	0.633059	1.2:+1641238	None:intergenic
ACATCTATGGAAGAAGGAAG+TGG	0.599359	1.2:-1640733	MS.gene24218:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTACACAGAAACATGAT+AGG	-	chr1.2:1640468-1640487	MS.gene24218:intron	30.0%
ATATCTTGTTCTCTTGGAAT+TGG	+	chr1.2:1641284-1641303	None:intergenic	30.0%
CAATAATAATATGGGGATCT+GGG	-	chr1.2:1641087-1641106	MS.gene24218:intron	30.0%
CAGATCCCCATATTATTATT+GGG	+	chr1.2:1641088-1641107	None:intergenic	30.0%
CATCTTCACAAATAATGATG+GGG	-	chr1.2:1641140-1641159	MS.gene24218:CDS	30.0%
GGTGATGAATTGTTTAATGT+TGG	-	chr1.2:1641034-1641053	MS.gene24218:intron	30.0%
TGTGAAGATGAATATAGAGA+AGG	+	chr1.2:1641130-1641149	None:intergenic	30.0%
AAAACCTTGGAGAAAGCAAA+GGG	+	chr1.2:1640734-1640753	None:intergenic	35.0%
AAAATCATCAACTTGCCAAC+CGG	+	chr1.2:1640693-1640712	None:intergenic	35.0%
AAAGCAGCATCAACAAATCA+AGG	-	chr1.2:1641197-1641216	MS.gene24218:CDS	35.0%

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	1640072	1641312	1640072	ID=MS.gene24218
chr1.2	mRNA	1640072	1641312	1640072	ID=MS.gene24218.t1;Parent=MS.gene24218
chr1.2	exon	1641127	1641312	1641127	ID=MS.gene24218.t1.exon1;Parent=MS.gene24218.t1
chr1.2	CDS	1641127	1641312	1641127	ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1
chr1.2	exon	1640636	1640998	1640636	ID=MS.gene24218.t1.exon2;Parent=MS.gene24218.t1
chr1.2	CDS	1640636	1640998	1640636	ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1
chr1.2	exon	1640072	1640350	1640072	ID=MS.gene24218.t1.exon3;Parent=MS.gene24218.t1
chr1.2	CDS	1640072	1640350	1640072	ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1

Gene Sequence

>MS.gene24218

ATGAAGATCCAGTGTGATGTATGCAACAAAAATGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCTTATGTATCGACTGTGACCACCGTGTCCACCACGCCAACAAACTCGCTTCCAAACACCACCGTCTCGCTCTTCATAACCCTACTCCTAAACAACACCCTCTCTGCGATATTTGTCAGGTATTATCAATTTTGTTGACCTAACTTTCTCTTATATTTTGTATCAGAGATCGTAAACTTTTGTTGACTTAACTTTTTCTTATATTCGGACGAGAGTAACATGTTGACTTTTTTTTTTCTTGTTTTAGGAGAGAAGAGCTTTTGTGTTATGTAAACAAGACAGAGCAATTCTATGCAAAGATTGTGATTCATCTATTCATTCAGTGAATGAACTTACACAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGATTTCAACTACAAACTCATCTTCTTCATCTTCATCATCAACACCTTCTTCAGCTACTACCAAGTCAAATCTTGTTCCTTCTTCTTCTTTGATTGAAAAATCTACTACTCCTTCACCAACATCTATGGAAGAAGGAAGTGGTGGTTCTACTATATCTCAATACTTGATTGAAACTCTACCCGGTTGGCAAGTTGATGATTTTCTTGATTCTTCTTCTGTTCCCTTTGCTTTCTCCAAGGTTTTCCTATTTTCTACCTCTCTCTTACTCAATATTAATTTATTTATTTGTATATATCATGTTTGTTTTATACTTTGATTAGATCTAATTAAGATTTTAAATTGTGACCGTGTTACAATCTTTGATATTATGAAAATTGCAGTCAAATTCAGCTAATACAGCCTCGGTCGCCATAATCTACAAAGCGGTCCGAGGCTGTATCAGCTGCATGTGACTGTCAAAGATACTAAGTTTAAATATAATTGATTGGTTTGTTTGTGATTGGATCTGGTGTATGAAATGCAGGGTGATGAATTGTTTAATGTTGGTATTGAAGAAAATCTTGATTCATTCTTTCCCAATAATAATATGGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCATCTTCACAAATAATGATGGGGCAGAGTGAGACAACAAAGAAGGGGAACAACAACAAAAGCAGCATCAACAAATCAAGGTTGAGGTTGAGGGATGATCATGATAGTAATAGTTTCACAGTTCCACAGATTAGTCCTGTTGCCAATTCCAAGAGAACAAGATATCTATGGTAG

Protein sequence

>MS.gene24218.t1

MKIQCDVCNKNEASLFCTADEAALCIDCDHRVHHANKLASKHHRLALHNPTPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTQKHDRFLLTGVKISTTNSSSSSSSSTPSSATTKSNLVPSSSLIEKSTTPSPTSMEEGSGGSTISQYLIETLPGWQVDDFLDSSSVPFAFSKGDELFNVGIEENLDSFFPNNNMGIWVPQAPPPSLYSSSQIMMGQSETTKKGNNNKSSINKSRLRLRDDHDSNSFTVPQISPVANSKRTRYLW