Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24218.t1 | XP_003589351.1 | 88.7 | 275 | 29 | 1 | 1 | 275 | 1 | 273 | 1.00E-107 | 399.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24218.t1 | Q9LQZ7 | 39.6 | 331 | 144 | 8 | 1 | 275 | 1 | 331 | 3.8e-47 | 189.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24218.t1 | B7FII1 | 88.7 | 275 | 29 | 1 | 1 | 275 | 1 | 273 | 7.3e-108 | 399.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene24218.t1 | TF | DBB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24218.t1 | MTR_1g023260 | 96.727 | 275 | 7 | 1 | 1 | 275 | 1 | 273 | 0.0 | 548 |
MS.gene24218.t1 | MTR_1g023260 | 95.735 | 211 | 7 | 1 | 65 | 275 | 57 | 265 | 3.81e-146 | 410 |
MS.gene24218.t1 | MTR_1g023260 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 6.55e-132 | 371 |
MS.gene24218.t1 | MTR_3g113070 | 46.520 | 273 | 83 | 9 | 1 | 263 | 1 | 220 | 1.76e-65 | 204 |
MS.gene24218.t1 | MTR_4g071200 | 47.005 | 217 | 102 | 4 | 1 | 212 | 1 | 209 | 2.91e-61 | 193 |
MS.gene24218.t1 | MTR_3g117320 | 48.969 | 194 | 88 | 3 | 1 | 183 | 1 | 194 | 1.55e-59 | 189 |
MS.gene24218.t1 | MTR_4g067320 | 35.036 | 274 | 132 | 8 | 1 | 263 | 1 | 239 | 9.52e-42 | 144 |
MS.gene24218.t1 | MTR_4g067320 | 34.909 | 275 | 132 | 8 | 1 | 263 | 1 | 240 | 1.45e-41 | 143 |
MS.gene24218.t1 | MTR_2g073370 | 39.175 | 194 | 92 | 4 | 1 | 171 | 1 | 191 | 7.52e-38 | 135 |
MS.gene24218.t1 | MTR_2g099010 | 42.775 | 173 | 78 | 3 | 1 | 173 | 1 | 152 | 1.90e-37 | 132 |
MS.gene24218.t1 | MTR_2g099010 | 42.775 | 173 | 78 | 3 | 1 | 173 | 1 | 152 | 1.93e-37 | 132 |
MS.gene24218.t1 | MTR_5g021580 | 34.503 | 171 | 98 | 4 | 1 | 161 | 1 | 167 | 2.92e-24 | 96.7 |
MS.gene24218.t1 | MTR_5g021580 | 34.503 | 171 | 98 | 4 | 1 | 161 | 1 | 167 | 4.10e-24 | 96.7 |
MS.gene24218.t1 | MTR_1g013450 | 46.392 | 97 | 42 | 1 | 5 | 101 | 6 | 92 | 3.23e-23 | 97.1 |
MS.gene24218.t1 | MTR_4g128930 | 45.161 | 93 | 41 | 1 | 5 | 97 | 22 | 104 | 1.40e-20 | 90.5 |
MS.gene24218.t1 | MTR_3g105710 | 41.818 | 110 | 54 | 1 | 5 | 114 | 6 | 105 | 8.18e-19 | 84.3 |
MS.gene24218.t1 | MTR_7g018170 | 41.935 | 93 | 44 | 1 | 5 | 97 | 26 | 108 | 4.83e-18 | 83.6 |
MS.gene24218.t1 | MTR_7g108150 | 35.714 | 98 | 52 | 2 | 5 | 102 | 20 | 106 | 2.34e-13 | 69.7 |
MS.gene24218.t1 | MTR_5g069480 | 32.990 | 97 | 55 | 1 | 1 | 97 | 1 | 87 | 5.53e-13 | 68.6 |
MS.gene24218.t1 | MTR_5g069480 | 32.990 | 97 | 55 | 1 | 1 | 97 | 1 | 87 | 7.31e-13 | 67.8 |
MS.gene24218.t1 | MTR_3g082630 | 34.021 | 97 | 53 | 2 | 1 | 97 | 1 | 86 | 2.14e-11 | 63.9 |
MS.gene24218.t1 | MTR_2g099010 | 31.897 | 116 | 59 | 2 | 58 | 173 | 31 | 126 | 3.29e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24218.t1 | AT1G75540 | 43.275 | 342 | 116 | 13 | 1 | 275 | 1 | 331 | 1.10e-71 | 223 |
MS.gene24218.t1 | AT4G39070 | 48.276 | 203 | 78 | 3 | 1 | 176 | 1 | 203 | 5.47e-52 | 170 |
MS.gene24218.t1 | AT1G06040 | 38.406 | 276 | 129 | 10 | 1 | 263 | 1 | 248 | 2.99e-44 | 150 |
MS.gene24218.t1 | AT1G06040 | 44.199 | 181 | 79 | 4 | 1 | 177 | 1 | 163 | 3.56e-40 | 137 |
MS.gene24218.t1 | AT2G31380 | 35.185 | 270 | 134 | 10 | 1 | 262 | 1 | 237 | 2.33e-38 | 135 |
MS.gene24218.t1 | AT4G10240 | 49.612 | 129 | 56 | 2 | 1 | 124 | 1 | 125 | 1.17e-36 | 128 |
MS.gene24218.t1 | AT1G78600 | 45.890 | 146 | 74 | 3 | 1 | 146 | 1 | 141 | 1.31e-36 | 132 |
MS.gene24218.t1 | AT1G78600 | 41.520 | 171 | 94 | 4 | 1 | 170 | 1 | 166 | 2.21e-36 | 132 |
MS.gene24218.t1 | AT4G38960 | 41.406 | 128 | 64 | 3 | 1 | 128 | 1 | 117 | 3.86e-23 | 93.6 |
MS.gene24218.t1 | AT4G38960 | 41.406 | 128 | 64 | 3 | 1 | 128 | 1 | 117 | 3.86e-23 | 93.6 |
MS.gene24218.t1 | AT2G24790 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 4.05e-23 | 96.3 |
MS.gene24218.t1 | AT2G24790 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 4.24e-23 | 94.7 |
MS.gene24218.t1 | AT2G21320 | 34.756 | 164 | 88 | 3 | 1 | 149 | 1 | 160 | 8.77e-23 | 92.4 |
MS.gene24218.t1 | AT5G24930 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 1.13e-20 | 90.5 |
MS.gene24218.t1 | AT5G15840 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 6.35e-19 | 85.9 |
MS.gene24218.t1 | AT5G15840 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 1.25e-18 | 83.6 |
MS.gene24218.t1 | AT3G02380 | 41.935 | 93 | 44 | 1 | 5 | 97 | 16 | 98 | 5.27e-18 | 82.8 |
MS.gene24218.t1 | AT5G15850 | 34.400 | 125 | 72 | 1 | 5 | 129 | 12 | 126 | 1.08e-17 | 82.0 |
MS.gene24218.t1 | AT5G57660 | 32.117 | 137 | 73 | 4 | 5 | 141 | 22 | 138 | 1.17e-15 | 76.3 |
MS.gene24218.t1 | AT4G38960 | 33.108 | 148 | 52 | 3 | 1 | 105 | 1 | 144 | 4.97e-15 | 72.8 |
MS.gene24218.t1 | AT1G28050 | 36.634 | 101 | 54 | 1 | 2 | 102 | 6 | 96 | 5.48e-14 | 72.0 |
MS.gene24218.t1 | AT2G33500 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.30e-13 | 69.7 |
MS.gene24218.t1 | AT2G33500 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.44e-13 | 69.7 |
MS.gene24218.t1 | AT2G47890 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 2.03e-12 | 66.6 |
MS.gene24218.t1 | AT2G47890 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 2.18e-12 | 65.5 |
MS.gene24218.t1 | AT2G47890 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 2.46e-12 | 66.6 |
MS.gene24218.t1 | AT3G07650 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 1.89e-11 | 63.9 |
MS.gene24218.t1 | AT3G07650 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 1.89e-11 | 63.9 |
MS.gene24218.t1 | AT3G07650 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 1.89e-11 | 63.9 |
MS.gene24218.t1 | AT3G07650 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 1.89e-11 | 63.9 |
MS.gene24218.t1 | AT5G48250 | 29.016 | 193 | 114 | 5 | 1 | 187 | 1 | 176 | 4.14e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGATCCCCATATTATTAT+TGG | 0.137675 | 1.2:+1640276 | None:intergenic |
ATTCTTTCCCAATAATAATA+TGG | 0.175250 | 1.2:-1640284 | MS.gene24218:CDS |
ATATCTTGTTCTCTTGGAAT+TGG | 0.322098 | 1.2:+1640081 | None:intergenic |
TTCTTTCCCAATAATAATAT+GGG | 0.326545 | 1.2:-1640283 | MS.gene24218:CDS |
TACTCCTTCACCAACATCTA+TGG | 0.332309 | 1.2:-1640746 | MS.gene24218:CDS |
CAGATCCCCATATTATTATT+GGG | 0.334863 | 1.2:+1640277 | None:intergenic |
CCAATAATAATATGGGGATC+TGG | 0.340677 | 1.2:-1640276 | MS.gene24218:CDS |
TCGCAGAGAGGGTGTTGTTT+AGG | 0.344263 | 1.2:+1641137 | None:intergenic |
CCATAGATATCTTGTTCTCT+TGG | 0.347739 | 1.2:+1640075 | None:intergenic |
GAGGGTGTTGTTTAGGAGTA+GGG | 0.372601 | 1.2:+1641144 | None:intergenic |
AGAGGGTGTTGTTTAGGAGT+AGG | 0.379819 | 1.2:+1641143 | None:intergenic |
CCAAGAGAACAAGATATCTA+TGG | 0.390568 | 1.2:-1640075 | MS.gene24218:CDS |
AAGAGCGAGACGGTGGTGTT+TGG | 0.393267 | 1.2:+1641172 | None:intergenic |
GTTCTCTTGGAATTGGCAAC+AGG | 0.403208 | 1.2:+1640088 | None:intergenic |
AAAATCATCAACTTGCCAAC+CGG | 0.412069 | 1.2:+1640672 | None:intergenic |
TTCATCTTCACAAATAATGA+TGG | 0.443338 | 1.2:-1640224 | MS.gene24218:CDS |
ACAAATCAAGGTTGAGGTTG+AGG | 0.454986 | 1.2:-1640153 | MS.gene24218:CDS |
CCCTCTCTGCGATATTTGTC+AGG | 0.457199 | 1.2:-1641126 | MS.gene24218:intron |
TGTTCCCTTTGCTTTCTCCA+AGG | 0.478253 | 1.2:-1640635 | MS.gene24218:intron |
CAATAATAATATGGGGATCT+GGG | 0.478272 | 1.2:-1640275 | MS.gene24218:CDS |
GGTGATGAATTGTTTAATGT+TGG | 0.482718 | 1.2:-1640328 | MS.gene24218:CDS |
CAAATCAAGGTTGAGGTTGA+GGG | 0.494528 | 1.2:-1640152 | MS.gene24218:CDS |
CATGATAGGTTTCTTCTCAC+TGG | 0.500831 | 1.2:-1640880 | MS.gene24218:CDS |
GATACATAAGGCGGCTTCAT+CGG | 0.502006 | 1.2:+1641235 | None:intergenic |
CTTCCTTCTTCCATAGATGT+TGG | 0.505484 | 1.2:+1640736 | None:intergenic |
GTGTTTGGAAGCGAGTTTGT+TGG | 0.511969 | 1.2:+1641187 | None:intergenic |
AACTTACACAGAAACATGAT+AGG | 0.518542 | 1.2:-1640894 | MS.gene24218:CDS |
TCATCTTCACAAATAATGAT+GGG | 0.520250 | 1.2:-1640223 | MS.gene24218:CDS |
AAAGCAGCATCAACAAATCA+AGG | 0.524782 | 1.2:-1640165 | MS.gene24218:CDS |
CAGAGTGAGACAACAAAGAA+GGG | 0.529375 | 1.2:-1640199 | MS.gene24218:CDS |
GCAGAGTGAGACAACAAAGA+AGG | 0.531335 | 1.2:-1640200 | MS.gene24218:CDS |
GACTTGGTAGTAGCTGAAGA+AGG | 0.541974 | 1.2:+1640808 | None:intergenic |
AGAGAAGGTGGTGGTGCTTG+AGG | 0.542822 | 1.2:+1640250 | None:intergenic |
GTGGTCACAGTCGATACATA+AGG | 0.545496 | 1.2:+1641223 | None:intergenic |
TCACCAACATCTATGGAAGA+AGG | 0.545672 | 1.2:-1640739 | MS.gene24218:CDS |
GTTTGTTGGCGTGGTGGACA+CGG | 0.549454 | 1.2:+1641201 | None:intergenic |
AAAACCTTGGAGAAAGCAAA+GGG | 0.550319 | 1.2:+1640631 | None:intergenic |
AGAAGGAACAAGATTTGACT+TGG | 0.550946 | 1.2:+1640792 | None:intergenic |
AAATCATCAACTTGCCAACC+GGG | 0.556383 | 1.2:+1640673 | None:intergenic |
GAAAACCTTGGAGAAAGCAA+AGG | 0.575554 | 1.2:+1640630 | None:intergenic |
TGATTGAAACTCTACCCGGT+TGG | 0.584818 | 1.2:-1640687 | MS.gene24218:CDS |
GCATCAACAAATCAAGGTTG+AGG | 0.588705 | 1.2:-1640159 | MS.gene24218:CDS |
TACTTGATTGAAACTCTACC+CGG | 0.593207 | 1.2:-1640691 | MS.gene24218:CDS |
ACATCTATGGAAGAAGGAAG+TGG | 0.599359 | 1.2:-1640733 | MS.gene24218:CDS |
TGTGAAGATGAATATAGAGA+AGG | 0.600444 | 1.2:+1640235 | None:intergenic |
GAAGATGAATATAGAGAAGG+TGG | 0.603622 | 1.2:+1640238 | None:intergenic |
TCTTCCATAGATGTTGGTGA+AGG | 0.607403 | 1.2:+1640742 | None:intergenic |
TGGAAGCGAGTTTGTTGGCG+TGG | 0.613525 | 1.2:+1641192 | None:intergenic |
CCTGACAAATATCGCAGAGA+GGG | 0.617757 | 1.2:+1641126 | None:intergenic |
TCTTTCCCAATAATAATATG+GGG | 0.620377 | 1.2:-1640282 | MS.gene24218:CDS |
ACATAAGGCGGCTTCATCGG+CGG | 0.633059 | 1.2:+1641238 | None:intergenic |
AAGCGAGTTTGTTGGCGTGG+TGG | 0.633769 | 1.2:+1641195 | None:intergenic |
CATCTTCACAAATAATGATG+GGG | 0.650089 | 1.2:-1640222 | MS.gene24218:CDS |
GATGAATATAGAGAAGGTGG+TGG | 0.651333 | 1.2:+1640241 | None:intergenic |
TCTATGGAAGAAGGAAGTGG+TGG | 0.656402 | 1.2:-1640730 | MS.gene24218:CDS |
AGAGTGAGACAACAAAGAAG+GGG | 0.664318 | 1.2:-1640198 | MS.gene24218:CDS |
TTGGCAACAGGACTAATCTG+TGG | 0.670590 | 1.2:+1640100 | None:intergenic |
GGTTATGAAGAGCGAGACGG+TGG | 0.677992 | 1.2:+1641165 | None:intergenic |
TAGGGTTATGAAGAGCGAGA+CGG | 0.681370 | 1.2:+1641162 | None:intergenic |
ACCTGACAAATATCGCAGAG+AGG | 0.707817 | 1.2:+1641125 | None:intergenic |
GTCACAGTCGATACATAAGG+CGG | 0.712524 | 1.2:+1641226 | None:intergenic |
TGTTGGCGTGGTGGACACGG+TGG | 0.723732 | 1.2:+1641204 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAGTTTAAATATAATTGAT+TGG | - | chr1.2:1640976-1640995 | MS.gene24218:CDS | 10.0% |
!!! | ACTTAACTTTTTCTTATATT+CGG | - | chr1.2:1640324-1640343 | MS.gene24218:CDS | 15.0% |
!!! | ACTTTTTTTTTTCTTGTTTT+AGG | - | chr1.2:1640364-1640383 | MS.gene24218:intron | 15.0% |
!! | ACAAAATATAAGAGAAAGTT+AGG | + | chr1.2:1640280-1640299 | None:intergenic | 20.0% |
!! | ATTCTTTCCCAATAATAATA+TGG | - | chr1.2:1641078-1641097 | MS.gene24218:intron | 20.0% |
!! | TAATATCAAAGATTGTAACA+CGG | + | chr1.2:1640859-1640878 | None:intergenic | 20.0% |
!! | TTCTTTCCCAATAATAATAT+GGG | - | chr1.2:1641079-1641098 | MS.gene24218:intron | 20.0% |
! | ATTAATATTGAGTAAGAGAG+AGG | + | chr1.2:1640768-1640787 | None:intergenic | 25.0% |
! | TCATCTTCACAAATAATGAT+GGG | - | chr1.2:1641139-1641158 | MS.gene24218:CDS | 25.0% |
! | TCTTTCCCAATAATAATATG+GGG | - | chr1.2:1641080-1641099 | MS.gene24218:intron | 25.0% |
! | TTCATCTTCACAAATAATGA+TGG | - | chr1.2:1641138-1641157 | MS.gene24218:CDS | 25.0% |
!! | TTTTCAATCAAAGAAGAAGA+AGG | + | chr1.2:1640590-1640609 | None:intergenic | 25.0% |
AACTTACACAGAAACATGAT+AGG | - | chr1.2:1640468-1640487 | MS.gene24218:intron | 30.0% | |
ATATCTTGTTCTCTTGGAAT+TGG | + | chr1.2:1641284-1641303 | None:intergenic | 30.0% | |
CAATAATAATATGGGGATCT+GGG | - | chr1.2:1641087-1641106 | MS.gene24218:intron | 30.0% | |
CAGATCCCCATATTATTATT+GGG | + | chr1.2:1641088-1641107 | None:intergenic | 30.0% | |
CATCTTCACAAATAATGATG+GGG | - | chr1.2:1641140-1641159 | MS.gene24218:CDS | 30.0% | |
GGTGATGAATTGTTTAATGT+TGG | - | chr1.2:1641034-1641053 | MS.gene24218:intron | 30.0% | |
TGTGAAGATGAATATAGAGA+AGG | + | chr1.2:1641130-1641149 | None:intergenic | 30.0% | |
!! | TTGATTGGTTTGTTTGTGAT+TGG | - | chr1.2:1640991-1641010 | MS.gene24218:intron | 30.0% |
AAAACCTTGGAGAAAGCAAA+GGG | + | chr1.2:1640734-1640753 | None:intergenic | 35.0% | |
AAAATCATCAACTTGCCAAC+CGG | + | chr1.2:1640693-1640712 | None:intergenic | 35.0% | |
AAAGCAGCATCAACAAATCA+AGG | - | chr1.2:1641197-1641216 | MS.gene24218:CDS | 35.0% | |
AAATTCAGCTAATACAGCCT+CGG | - | chr1.2:1640893-1640912 | MS.gene24218:CDS | 35.0% | |
AGAAGGAACAAGATTTGACT+TGG | + | chr1.2:1640573-1640592 | None:intergenic | 35.0% | |
CCAAGAGAACAAGATATCTA+TGG | - | chr1.2:1641287-1641306 | MS.gene24218:CDS | 35.0% | |
CCAATAATAATATGGGGATC+TGG | - | chr1.2:1641086-1641105 | MS.gene24218:intron | 35.0% | |
CCAGATCCCCATATTATTAT+TGG | + | chr1.2:1641089-1641108 | None:intergenic | 35.0% | |
CCATAGATATCTTGTTCTCT+TGG | + | chr1.2:1641290-1641309 | None:intergenic | 35.0% | |
GAAGATGAATATAGAGAAGG+TGG | + | chr1.2:1641127-1641146 | None:intergenic | 35.0% | |
GGTAGAAAATAGGAAAACCT+TGG | + | chr1.2:1640747-1640766 | None:intergenic | 35.0% | |
GTAAGAGAGAGGTAGAAAAT+AGG | + | chr1.2:1640757-1640776 | None:intergenic | 35.0% | |
TACTTGATTGAAACTCTACC+CGG | - | chr1.2:1640671-1640690 | MS.gene24218:CDS | 35.0% | |
! | TTTTGTTGCATACATCACAC+TGG | + | chr1.2:1640083-1640102 | None:intergenic | 35.0% |
AAATCATCAACTTGCCAACC+GGG | + | chr1.2:1640692-1640711 | None:intergenic | 40.0% | |
ACAAATCAAGGTTGAGGTTG+AGG | - | chr1.2:1641209-1641228 | MS.gene24218:CDS | 40.0% | |
ACATCTATGGAAGAAGGAAG+TGG | - | chr1.2:1640629-1640648 | MS.gene24218:intron | 40.0% | |
AGAGTGAGACAACAAAGAAG+GGG | - | chr1.2:1641164-1641183 | MS.gene24218:CDS | 40.0% | |
CAAATCAAGGTTGAGGTTGA+GGG | - | chr1.2:1641210-1641229 | MS.gene24218:CDS | 40.0% | |
CAGAGTGAGACAACAAAGAA+GGG | - | chr1.2:1641163-1641182 | MS.gene24218:CDS | 40.0% | |
CATGATAGGTTTCTTCTCAC+TGG | - | chr1.2:1640482-1640501 | MS.gene24218:intron | 40.0% | |
CTTCCTTCTTCCATAGATGT+TGG | + | chr1.2:1640629-1640648 | None:intergenic | 40.0% | |
GAAAACCTTGGAGAAAGCAA+AGG | + | chr1.2:1640735-1640754 | None:intergenic | 40.0% | |
GATCTGGTGTATGAAATGCA+GGG | - | chr1.2:1641013-1641032 | MS.gene24218:intron | 40.0% | |
GATGAATATAGAGAAGGTGG+TGG | + | chr1.2:1641124-1641143 | None:intergenic | 40.0% | |
GCATCAACAAATCAAGGTTG+AGG | - | chr1.2:1641203-1641222 | MS.gene24218:CDS | 40.0% | |
TACTCCTTCACCAACATCTA+TGG | - | chr1.2:1640616-1640635 | MS.gene24218:intron | 40.0% | |
TCACCAACATCTATGGAAGA+AGG | - | chr1.2:1640623-1640642 | MS.gene24218:intron | 40.0% | |
! | GGTTTGTTTGTGATTGGATC+TGG | - | chr1.2:1640997-1641016 | MS.gene24218:intron | 40.0% |
! | TCTTCCATAGATGTTGGTGA+AGG | + | chr1.2:1640623-1640642 | None:intergenic | 40.0% |
ACCTGACAAATATCGCAGAG+AGG | + | chr1.2:1640240-1640259 | None:intergenic | 45.0% | |
ATAATCTACAAAGCGGTCCG+AGG | - | chr1.2:1640921-1640940 | MS.gene24218:CDS | 45.0% | |
CCTGACAAATATCGCAGAGA+GGG | + | chr1.2:1640239-1640258 | None:intergenic | 45.0% | |
GATACATAAGGCGGCTTCAT+CGG | + | chr1.2:1640130-1640149 | None:intergenic | 45.0% | |
GCAGAGTGAGACAACAAAGA+AGG | - | chr1.2:1641162-1641181 | MS.gene24218:CDS | 45.0% | |
GGATCTGGTGTATGAAATGC+AGG | - | chr1.2:1641012-1641031 | MS.gene24218:intron | 45.0% | |
GGTCGCCATAATCTACAAAG+CGG | - | chr1.2:1640914-1640933 | MS.gene24218:CDS | 45.0% | |
GTCACAGTCGATACATAAGG+CGG | + | chr1.2:1640139-1640158 | None:intergenic | 45.0% | |
GTGGTCACAGTCGATACATA+AGG | + | chr1.2:1640142-1640161 | None:intergenic | 45.0% | |
GTGTTTGGAAGCGAGTTTGT+TGG | + | chr1.2:1640178-1640197 | None:intergenic | 45.0% | |
GTTCTCTTGGAATTGGCAAC+AGG | + | chr1.2:1641277-1641296 | None:intergenic | 45.0% | |
TAGGGTTATGAAGAGCGAGA+CGG | + | chr1.2:1640203-1640222 | None:intergenic | 45.0% | |
TCGGACCGCTTTGTAGATTA+TGG | + | chr1.2:1640922-1640941 | None:intergenic | 45.0% | |
TCTATGGAAGAAGGAAGTGG+TGG | - | chr1.2:1640632-1640651 | MS.gene24218:intron | 45.0% | |
TGATTGAAACTCTACCCGGT+TGG | - | chr1.2:1640675-1640694 | MS.gene24218:CDS | 45.0% | |
TGTTCCCTTTGCTTTCTCCA+AGG | - | chr1.2:1640727-1640746 | MS.gene24218:CDS | 45.0% | |
TTGGCAACAGGACTAATCTG+TGG | + | chr1.2:1641265-1641284 | None:intergenic | 45.0% | |
TTTGTAGATTATGGCGACCG+AGG | + | chr1.2:1640913-1640932 | None:intergenic | 45.0% | |
! | GACTTGGTAGTAGCTGAAGA+AGG | + | chr1.2:1640557-1640576 | None:intergenic | 45.0% |
!! | AGAGGGTGTTGTTTAGGAGT+AGG | + | chr1.2:1640222-1640241 | None:intergenic | 45.0% |
!! | GAGGGTGTTGTTTAGGAGTA+GGG | + | chr1.2:1640221-1640240 | None:intergenic | 45.0% |
ACATGCAGCTGATACAGCCT+CGG | + | chr1.2:1640941-1640960 | None:intergenic | 50.0% | |
CCCTCTCTGCGATATTTGTC+AGG | - | chr1.2:1640236-1640255 | MS.gene24218:CDS | 50.0% | |
!! | TCGCAGAGAGGGTGTTGTTT+AGG | + | chr1.2:1640228-1640247 | None:intergenic | 50.0% |
AAGAGCGAGACGGTGGTGTT+TGG | + | chr1.2:1640193-1640212 | None:intergenic | 55.0% | |
ACATAAGGCGGCTTCATCGG+CGG | + | chr1.2:1640127-1640146 | None:intergenic | 55.0% | |
GGTTATGAAGAGCGAGACGG+TGG | + | chr1.2:1640200-1640219 | None:intergenic | 55.0% | |
! | AGAGAAGGTGGTGGTGCTTG+AGG | + | chr1.2:1641115-1641134 | None:intergenic | 55.0% |
!! | AAGCGAGTTTGTTGGCGTGG+TGG | + | chr1.2:1640170-1640189 | None:intergenic | 55.0% |
!! | GTTTGTTGGCGTGGTGGACA+CGG | + | chr1.2:1640164-1640183 | None:intergenic | 55.0% |
!! | TGGAAGCGAGTTTGTTGGCG+TGG | + | chr1.2:1640173-1640192 | None:intergenic | 55.0% |
!! | TGTTGGCGTGGTGGACACGG+TGG | + | chr1.2:1640161-1640180 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 1640072 | 1641312 | 1640072 | ID=MS.gene24218 |
chr1.2 | mRNA | 1640072 | 1641312 | 1640072 | ID=MS.gene24218.t1;Parent=MS.gene24218 |
chr1.2 | exon | 1641127 | 1641312 | 1641127 | ID=MS.gene24218.t1.exon1;Parent=MS.gene24218.t1 |
chr1.2 | CDS | 1641127 | 1641312 | 1641127 | ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1 |
chr1.2 | exon | 1640636 | 1640998 | 1640636 | ID=MS.gene24218.t1.exon2;Parent=MS.gene24218.t1 |
chr1.2 | CDS | 1640636 | 1640998 | 1640636 | ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1 |
chr1.2 | exon | 1640072 | 1640350 | 1640072 | ID=MS.gene24218.t1.exon3;Parent=MS.gene24218.t1 |
chr1.2 | CDS | 1640072 | 1640350 | 1640072 | ID=cds.MS.gene24218.t1;Parent=MS.gene24218.t1 |
Gene Sequence |
Protein sequence |