Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24310.t1 | XP_013466060.1 | 87.6 | 249 | 31 | 0 | 1 | 249 | 1 | 249 | 2.60E-118 | 434.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24310.t1 | Q8S307 | 40.3 | 290 | 95 | 8 | 37 | 248 | 46 | 335 | 5.5e-37 | 156.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24310.t1 | A0A072VDJ6 | 87.6 | 249 | 31 | 0 | 1 | 249 | 1 | 249 | 1.8e-118 | 434.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene24310.t1 | TF | BES1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24310.t1 | MTR_1g021990 | 90.763 | 249 | 23 | 0 | 1 | 249 | 1 | 249 | 6.30e-169 | 466 |
MS.gene24310.t1 | MTR_3g111680 | 46.006 | 313 | 103 | 7 | 1 | 247 | 1 | 313 | 1.40e-58 | 188 |
MS.gene24310.t1 | MTR_5g019550 | 36.760 | 321 | 108 | 9 | 14 | 246 | 9 | 322 | 1.28e-29 | 113 |
MS.gene24310.t1 | MTR_2g075410 | 38.365 | 318 | 109 | 13 | 14 | 246 | 6 | 321 | 2.28e-25 | 102 |
MS.gene24310.t1 | MTR_2g075400 | 36.334 | 311 | 118 | 10 | 14 | 246 | 6 | 314 | 4.48e-23 | 97.8 |
MS.gene24310.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.25e-11 | 63.5 |
MS.gene24310.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.39e-11 | 63.5 |
MS.gene24310.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.44e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24310.t1 | AT1G75080 | 45.541 | 314 | 93 | 8 | 13 | 248 | 22 | 335 | 1.25e-62 | 199 |
MS.gene24310.t1 | AT1G75080 | 45.541 | 314 | 93 | 8 | 13 | 248 | 22 | 335 | 1.25e-62 | 199 |
MS.gene24310.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 43 | 355 | 2.64e-60 | 194 |
MS.gene24310.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 3.66e-60 | 193 |
MS.gene24310.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 3.66e-60 | 193 |
MS.gene24310.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 3.66e-60 | 193 |
MS.gene24310.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 3.66e-60 | 193 |
MS.gene24310.t1 | AT3G50750 | 41.115 | 287 | 107 | 10 | 1 | 243 | 1 | 269 | 6.68e-34 | 123 |
MS.gene24310.t1 | AT4G36780 | 50.000 | 164 | 46 | 2 | 14 | 141 | 16 | 179 | 5.63e-33 | 120 |
MS.gene24310.t1 | AT4G18890 | 36.000 | 300 | 102 | 12 | 14 | 246 | 6 | 282 | 2.78e-22 | 93.2 |
MS.gene24310.t1 | AT1G78700 | 33.333 | 330 | 105 | 9 | 14 | 243 | 6 | 320 | 2.16e-20 | 88.6 |
MS.gene24310.t1 | AT2G45880 | 51.515 | 66 | 32 | 0 | 13 | 78 | 68 | 133 | 6.56e-14 | 71.2 |
MS.gene24310.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 7.69e-13 | 68.2 |
MS.gene24310.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 7.75e-13 | 68.2 |
MS.gene24310.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 112 | 170 | 8.11e-13 | 68.2 |
Find 69 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAAATGGGACATGGATTT+TGG | 0.099494 | 1.1:+2446843 | None:intergenic |
ATCGAATATCTTTGATGTTA+TGG | 0.271986 | 1.1:+2447621 | None:intergenic |
TGATGAGGGATTGGATGATT+TGG | 0.284092 | 1.1:-2446441 | MS.gene24310:CDS |
AGATGCAGCAAAAGGGTAAT+TGG | 0.291581 | 1.1:+2446652 | None:intergenic |
CTCCATTTCCAATGAATCTA+TGG | 0.308568 | 1.1:-2446681 | MS.gene24310:CDS |
CTTGGGTTCGTTGGGCTAGC+AGG | 0.311924 | 1.1:+2446623 | None:intergenic |
TTGGAACTCACTCTTGGAAC+TGG | 0.334633 | 1.1:-2446422 | MS.gene24310:CDS |
GAGTAGAGAGGAGGTGTAAC+AGG | 0.350527 | 1.1:+2446743 | None:intergenic |
GGAAAATGCCATAGATTCAT+TGG | 0.351258 | 1.1:+2446673 | None:intergenic |
TGCCATAGATTCATTGGAAA+TGG | 0.364323 | 1.1:+2446679 | None:intergenic |
AACTGGGAAAGGAAAGATTT+AGG | 0.375942 | 1.1:-2446405 | None:intergenic |
GGAATTGAAGTTGGAAAAGA+TGG | 0.394254 | 1.1:+2446821 | None:intergenic |
GATGATTTGGAACTCACTCT+TGG | 0.402192 | 1.1:-2446428 | MS.gene24310:CDS |
TATGAAGGCTTGGGTTCGTT+GGG | 0.406355 | 1.1:+2446615 | None:intergenic |
GAAGAGGTTGGCACTGCAAA+TGG | 0.411998 | 1.1:+2446560 | None:intergenic |
TTGGGTTCGTTGGGCTAGCA+GGG | 0.427382 | 1.1:+2446624 | None:intergenic |
TTGATTGGAGTATGAAGGCT+TGG | 0.439266 | 1.1:+2446605 | None:intergenic |
CTCTTCATCTTTCAATGCTG+TGG | 0.445261 | 1.1:-2446543 | MS.gene24310:CDS |
AGTTGGAAAAGATGGACAAA+TGG | 0.453995 | 1.1:+2446829 | None:intergenic |
GCAAAAGGATGGAACTTGAT+TGG | 0.457115 | 1.1:+2446590 | None:intergenic |
GGGGTAGAAGATGCAGCAAA+AGG | 0.462613 | 1.1:+2446644 | None:intergenic |
TGGTATGAAGGAATTGAAGT+TGG | 0.464795 | 1.1:+2446812 | None:intergenic |
GTATGAAGGCTTGGGTTCGT+TGG | 0.466162 | 1.1:+2446614 | None:intergenic |
GATATCCACAAAGGAGGAAA+AGG | 0.466792 | 1.1:+2446776 | None:intergenic |
ATGGAGTCCCATGCTGGAAT+TGG | 0.471276 | 1.1:+2446698 | None:intergenic |
GAAAAGGCTGAGGAGTGAAT+TGG | 0.472490 | 1.1:+2446792 | None:intergenic |
CTTCTGCACAAAGAGCTTTG+AGG | 0.474572 | 1.1:+2447542 | None:intergenic |
GGTGTAAGGCTTATTGATGT+TGG | 0.478866 | 1.1:+2446719 | None:intergenic |
AAAGCTCTTTGTGCAGAAGC+TGG | 0.483728 | 1.1:-2447538 | MS.gene24310:CDS |
TTGGGGTGCAAGTAAAGCCT+TGG | 0.488933 | 1.1:-2446481 | MS.gene24310:CDS |
ATTGATGTTGGTGAGTAGAG+AGG | 0.496798 | 1.1:+2446731 | None:intergenic |
GCAAATGGAGATTGTGCAAA+AGG | 0.501672 | 1.1:+2446575 | None:intergenic |
GGAACTTGATTGGAGTATGA+AGG | 0.505849 | 1.1:+2446600 | None:intergenic |
GTTGGAAAAGATGGACAAAT+GGG | 0.506046 | 1.1:+2446830 | None:intergenic |
TGGGGTGCAAGTAAAGCCTT+GGG | 0.507029 | 1.1:-2446480 | MS.gene24310:CDS |
CTCACTCTTGGAACTGGGAA+AGG | 0.507498 | 1.1:-2446416 | MS.gene24310:CDS |
TGATTGGAGTATGAAGGCTT+GGG | 0.509209 | 1.1:+2446606 | None:intergenic |
TTGGAAATGGAGTCCCATGC+TGG | 0.515325 | 1.1:+2446692 | None:intergenic |
CCCATGCTGGAATTGGTGTA+AGG | 0.517184 | 1.1:+2446705 | None:intergenic |
ATATGATGAGAGAAAGAAGA+AGG | 0.521014 | 1.1:-2447648 | MS.gene24310:CDS |
GTGCCTGCATCATTGTTTAG+TGG | 0.523421 | 1.1:+2446881 | None:intergenic |
CTCTTTGTGCAGAAGCTGGT+TGG | 0.523500 | 1.1:-2447534 | MS.gene24310:CDS |
ATGGAGATTGTGCAAAAGGA+TGG | 0.524930 | 1.1:+2446579 | None:intergenic |
CCTGCATCATTGTTTAGTGG+AGG | 0.531453 | 1.1:+2446884 | None:intergenic |
TTGTGCAGAAGCTGGTTGGT+CGG | 0.532073 | 1.1:-2447530 | MS.gene24310:CDS |
CTAAGTTACCTTGCGATAGG+TGG | 0.533179 | 1.1:+2447492 | None:intergenic |
TTCTCTTTCTCCTTCCACGA+TGG | 0.536162 | 1.1:+2447673 | None:intergenic |
TGGGTTCGTTGGGCTAGCAG+GGG | 0.542358 | 1.1:+2446625 | None:intergenic |
ATTCTAAGTTACCTTGCGAT+AGG | 0.550407 | 1.1:+2447489 | None:intergenic |
TCGGAGGAAGCCATCGTGGA+AGG | 0.554225 | 1.1:-2447683 | MS.gene24310:CDS |
TGGAACTCACTCTTGGAACT+GGG | 0.557403 | 1.1:-2446421 | MS.gene24310:CDS |
TGAGGAGTGAATTGGTATGA+AGG | 0.559547 | 1.1:+2446800 | None:intergenic |
CACAGCATTGAAAGATGAAG+AGG | 0.562677 | 1.1:+2446544 | None:intergenic |
CACAAAGGAGGAAAAGGCTG+AGG | 0.574609 | 1.1:+2446782 | None:intergenic |
ATAACATCAAAGATATTCGA+TGG | 0.589300 | 1.1:-2447619 | MS.gene24310:CDS |
GGGTAGAAGATGCAGCAAAA+GGG | 0.593286 | 1.1:+2446645 | None:intergenic |
CCTCCACTAAACAATGATGC+AGG | 0.594195 | 1.1:-2446884 | MS.gene24310:CDS |
GCCTTACACCAATTCCAGCA+TGG | 0.599458 | 1.1:-2446706 | MS.gene24310:CDS |
CCTTACACCAATTCCAGCAT+GGG | 0.605296 | 1.1:-2446705 | MS.gene24310:CDS |
GGTTGGTCGGTCGAAGAAGA+CGG | 0.613610 | 1.1:-2447517 | MS.gene24310:CDS |
AAAGATGGACAAATGGGACA+TGG | 0.629842 | 1.1:+2446836 | None:intergenic |
GATGTTGGTGAGTAGAGAGG+AGG | 0.631246 | 1.1:+2446734 | None:intergenic |
GAATTCGGAGGAAGCCATCG+TGG | 0.640888 | 1.1:-2447687 | MS.gene24310:CDS |
AGACGGAACCACCTATCGCA+AGG | 0.647720 | 1.1:-2447500 | MS.gene24310:intron |
GCATTGAAAGATGAAGAGGT+TGG | 0.651739 | 1.1:+2446548 | None:intergenic |
TCGATGGACTTCGAGCTCAA+AGG | 0.659335 | 1.1:-2447603 | MS.gene24310:CDS |
CTGTTTGATATCCACAAAGG+AGG | 0.659720 | 1.1:+2446770 | None:intergenic |
GCACTGTTTGATATCCACAA+AGG | 0.716903 | 1.1:+2446767 | None:intergenic |
GAAGCATTGTGACAACAACG+AGG | 0.796257 | 1.1:-2447566 | MS.gene24310:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTACATATGAAAAGTAT+CGG | + | chr1.1:2446787-2446806 | None:intergenic | 15.0% |
!! | AAACTTCAACAAAAAGAATT+CGG | - | chr1.1:2446422-2446441 | MS.gene24310:CDS | 20.0% |
!! | GAACAATAATGTAGTATAAA+TGG | + | chr1.1:2446716-2446735 | None:intergenic | 20.0% |
!! | TAGTATAAATGGATAGTTAT+AGG | + | chr1.1:2446705-2446724 | None:intergenic | 20.0% |
!!! | AACATAATTATCTGATCTTT+TGG | - | chr1.1:2446740-2446759 | MS.gene24310:CDS | 20.0% |
!!! | ATTGTTGTTTTTTGTGAATA+GGG | - | chr1.1:2447210-2447229 | MS.gene24310:intron | 20.0% |
! | ATAACATCAAAGATATTCGA+TGG | - | chr1.1:2446505-2446524 | MS.gene24310:CDS | 25.0% |
! | ATCGAATATCTTTGATGTTA+TGG | + | chr1.1:2446506-2446525 | None:intergenic | 25.0% |
! | GATGAAAAAATTCATGATGA+GGG | - | chr1.1:2447669-2447688 | MS.gene24310:CDS | 25.0% |
! | TGATGAAAAAATTCATGATG+AGG | - | chr1.1:2447668-2447687 | MS.gene24310:CDS | 25.0% |
!! | ATCTGATGAATAAGATCTTT+TGG | + | chr1.1:2446843-2446862 | None:intergenic | 25.0% |
!!! | ACATAGTTGTTTTGAACTAA+AGG | + | chr1.1:2447029-2447048 | None:intergenic | 25.0% |
!!! | GATTGTTGTTTTTTGTGAAT+AGG | - | chr1.1:2447209-2447228 | MS.gene24310:intron | 25.0% |
AAAAATTCATGATGAGGGAT+TGG | - | chr1.1:2447674-2447693 | MS.gene24310:CDS | 30.0% | |
AAAGGTTAAAGAAGTTGAAG+TGG | + | chr1.1:2447011-2447030 | None:intergenic | 30.0% | |
ACTAATGTTGCAAATAAGGT+AGG | + | chr1.1:2447136-2447155 | None:intergenic | 30.0% | |
ATATGATGAGAGAAAGAAGA+AGG | - | chr1.1:2446476-2446495 | MS.gene24310:CDS | 30.0% | |
ATGACATGTTCAAAAATGCT+TGG | - | chr1.1:2447624-2447643 | MS.gene24310:CDS | 30.0% | |
CAAGTAACAAAGAAACAAAG+AGG | + | chr1.1:2446673-2446692 | None:intergenic | 30.0% | |
CTTCCATGAAGAAAATCAAT+TGG | - | chr1.1:2446936-2446955 | MS.gene24310:intron | 30.0% | |
GTACACTAATGTTGCAAATA+AGG | + | chr1.1:2447140-2447159 | None:intergenic | 30.0% | |
TGACATGTTCAAAAATGCTT+GGG | - | chr1.1:2447625-2447644 | MS.gene24310:CDS | 30.0% | |
! | AATAGTGTGCATTTGAAATG+TGG | + | chr1.1:2447086-2447105 | None:intergenic | 30.0% |
! | TTTTGTTGAAGTTTCTGTGT+CGG | + | chr1.1:2446416-2446435 | None:intergenic | 30.0% |
!! | ATTTTGGGAATAAGAGAAAG+AGG | + | chr1.1:2447268-2447287 | None:intergenic | 30.0% |
!! | GTACCAATTGATTTTCTTCA+TGG | + | chr1.1:2446942-2446961 | None:intergenic | 30.0% |
!!! | TGAATTTTTTCATCAACCCA+AGG | + | chr1.1:2447663-2447682 | None:intergenic | 30.0% |
AATTACACAAGCATGCATCA+AGG | + | chr1.1:2446914-2446933 | None:intergenic | 35.0% | |
AGTTGGAAAAGATGGACAAA+TGG | + | chr1.1:2447298-2447317 | None:intergenic | 35.0% | |
ATTCTAAGTTACCTTGCGAT+AGG | + | chr1.1:2446638-2446657 | None:intergenic | 35.0% | |
CTCCATTTCCAATGAATCTA+TGG | - | chr1.1:2447443-2447462 | MS.gene24310:intron | 35.0% | |
CTTCAACAAAAAGAATTCGG+AGG | - | chr1.1:2446425-2446444 | MS.gene24310:CDS | 35.0% | |
GACATGTTCAAAAATGCTTG+GGG | - | chr1.1:2447626-2447645 | MS.gene24310:CDS | 35.0% | |
GGAAAATGCCATAGATTCAT+TGG | + | chr1.1:2447454-2447473 | None:intergenic | 35.0% | |
GGAATTGAAGTTGGAAAAGA+TGG | + | chr1.1:2447306-2447325 | None:intergenic | 35.0% | |
GTTGGAAAAGATGGACAAAT+GGG | + | chr1.1:2447297-2447316 | None:intergenic | 35.0% | |
TGCCATAGATTCATTGGAAA+TGG | + | chr1.1:2447448-2447467 | None:intergenic | 35.0% | |
TGGTATGAAGGAATTGAAGT+TGG | + | chr1.1:2447315-2447334 | None:intergenic | 35.0% | |
! | ACAAATGGGACATGGATTTT+GGG | + | chr1.1:2447283-2447302 | None:intergenic | 35.0% |
AAAGATGGACAAATGGGACA+TGG | + | chr1.1:2447291-2447310 | None:intergenic | 40.0% | |
AGATGCAGCAAAAGGGTAAT+TGG | + | chr1.1:2447475-2447494 | None:intergenic | 40.0% | |
ATGGAGATTGTGCAAAAGGA+TGG | + | chr1.1:2447548-2447567 | None:intergenic | 40.0% | |
CTCTTCATCTTTCAATGCTG+TGG | - | chr1.1:2447581-2447600 | MS.gene24310:CDS | 40.0% | |
CTGTTTGATATCCACAAAGG+AGG | + | chr1.1:2447357-2447376 | None:intergenic | 40.0% | |
GATATCCACAAAGGAGGAAA+AGG | + | chr1.1:2447351-2447370 | None:intergenic | 40.0% | |
GCAAAAGGATGGAACTTGAT+TGG | + | chr1.1:2447537-2447556 | None:intergenic | 40.0% | |
GCAAATGGAGATTGTGCAAA+AGG | + | chr1.1:2447552-2447571 | None:intergenic | 40.0% | |
GCACTGTTTGATATCCACAA+AGG | + | chr1.1:2447360-2447379 | None:intergenic | 40.0% | |
GCATTGAAAGATGAAGAGGT+TGG | + | chr1.1:2447579-2447598 | None:intergenic | 40.0% | |
GGAACTTGATTGGAGTATGA+AGG | + | chr1.1:2447527-2447546 | None:intergenic | 40.0% | |
GGTGTAAGGCTTATTGATGT+TGG | + | chr1.1:2447408-2447427 | None:intergenic | 40.0% | |
TGAGGAGTGAATTGGTATGA+AGG | + | chr1.1:2447327-2447346 | None:intergenic | 40.0% | |
TGATGAGGGATTGGATGATT+TGG | - | chr1.1:2447683-2447702 | MS.gene24310:CDS | 40.0% | |
TGATTGGAGTATGAAGGCTT+GGG | + | chr1.1:2447521-2447540 | None:intergenic | 40.0% | |
TTGATTGGAGTATGAAGGCT+TGG | + | chr1.1:2447522-2447541 | None:intergenic | 40.0% | |
! | ATTGATGTTGGTGAGTAGAG+AGG | + | chr1.1:2447396-2447415 | None:intergenic | 40.0% |
! | CACAGCATTGAAAGATGAAG+AGG | + | chr1.1:2447583-2447602 | None:intergenic | 40.0% |
! | GACAAATGGGACATGGATTT+TGG | + | chr1.1:2447284-2447303 | None:intergenic | 40.0% |
! | GATGATTTGGAACTCACTCT+TGG | - | chr1.1:2447696-2447715 | MS.gene24310:CDS | 40.0% |
AAAGCTCTTTGTGCAGAAGC+TGG | - | chr1.1:2446586-2446605 | MS.gene24310:CDS | 45.0% | |
CCTCCACTAAACAATGATGC+AGG | - | chr1.1:2447240-2447259 | MS.gene24310:intron | 45.0% | |
CCTGCATCATTGTTTAGTGG+AGG | + | chr1.1:2447243-2447262 | None:intergenic | 45.0% | |
CCTTACACCAATTCCAGCAT+GGG | - | chr1.1:2447419-2447438 | MS.gene24310:intron | 45.0% | |
CTAAGTTACCTTGCGATAGG+TGG | + | chr1.1:2446635-2446654 | None:intergenic | 45.0% | |
CTTCTGCACAAAGAGCTTTG+AGG | + | chr1.1:2446585-2446604 | None:intergenic | 45.0% | |
GAAAAGGCTGAGGAGTGAAT+TGG | + | chr1.1:2447335-2447354 | None:intergenic | 45.0% | |
GGGTAGAAGATGCAGCAAAA+GGG | + | chr1.1:2447482-2447501 | None:intergenic | 45.0% | |
GTGCCTGCATCATTGTTTAG+TGG | + | chr1.1:2447246-2447265 | None:intergenic | 45.0% | |
TATGAAGGCTTGGGTTCGTT+GGG | + | chr1.1:2447512-2447531 | None:intergenic | 45.0% | |
TGGAACTCACTCTTGGAACT+GGG | - | chr1.1:2447703-2447722 | MS.gene24310:CDS | 45.0% | |
TTCTCTTTCTCCTTCCACGA+TGG | + | chr1.1:2446454-2446473 | None:intergenic | 45.0% | |
TTGGAACTCACTCTTGGAAC+TGG | - | chr1.1:2447702-2447721 | MS.gene24310:CDS | 45.0% | |
!! | GAAGCATTGTGACAACAACG+AGG | - | chr1.1:2446558-2446577 | MS.gene24310:CDS | 45.0% |
ATGGAGTCCCATGCTGGAAT+TGG | + | chr1.1:2447429-2447448 | None:intergenic | 50.0% | |
CACAAAGGAGGAAAAGGCTG+AGG | + | chr1.1:2447345-2447364 | None:intergenic | 50.0% | |
CCCATGCTGGAATTGGTGTA+AGG | + | chr1.1:2447422-2447441 | None:intergenic | 50.0% | |
CTCACTCTTGGAACTGGGAA+AGG | - | chr1.1:2447708-2447727 | MS.gene24310:CDS | 50.0% | |
CTCTTTGTGCAGAAGCTGGT+TGG | - | chr1.1:2446590-2446609 | MS.gene24310:CDS | 50.0% | |
GAAGAGGTTGGCACTGCAAA+TGG | + | chr1.1:2447567-2447586 | None:intergenic | 50.0% | |
GCCTTACACCAATTCCAGCA+TGG | - | chr1.1:2447418-2447437 | MS.gene24310:intron | 50.0% | |
GGGGTAGAAGATGCAGCAAA+AGG | + | chr1.1:2447483-2447502 | None:intergenic | 50.0% | |
GTATGAAGGCTTGGGTTCGT+TGG | + | chr1.1:2447513-2447532 | None:intergenic | 50.0% | |
TGGGGTGCAAGTAAAGCCTT+GGG | - | chr1.1:2447644-2447663 | MS.gene24310:CDS | 50.0% | |
TTGGAAATGGAGTCCCATGC+TGG | + | chr1.1:2447435-2447454 | None:intergenic | 50.0% | |
TTGGGGTGCAAGTAAAGCCT+TGG | - | chr1.1:2447643-2447662 | MS.gene24310:CDS | 50.0% | |
TTGTGCAGAAGCTGGTTGGT+CGG | - | chr1.1:2446594-2446613 | MS.gene24310:CDS | 50.0% | |
! | CTCAGCCTTTTCCTCCTTTG+TGG | - | chr1.1:2447343-2447362 | MS.gene24310:intron | 50.0% |
! | GAGTAGAGAGGAGGTGTAAC+AGG | + | chr1.1:2447384-2447403 | None:intergenic | 50.0% |
! | GATGTTGGTGAGTAGAGAGG+AGG | + | chr1.1:2447393-2447412 | None:intergenic | 50.0% |
! | TCGATGGACTTCGAGCTCAA+AGG | - | chr1.1:2446521-2446540 | MS.gene24310:CDS | 50.0% |
AGACGGAACCACCTATCGCA+AGG | - | chr1.1:2446624-2446643 | MS.gene24310:CDS | 55.0% | |
GAATTCGGAGGAAGCCATCG+TGG | - | chr1.1:2446437-2446456 | MS.gene24310:CDS | 55.0% | |
! | GGTTGGTCGGTCGAAGAAGA+CGG | - | chr1.1:2446607-2446626 | MS.gene24310:CDS | 55.0% |
!! | TTGGGTTCGTTGGGCTAGCA+GGG | + | chr1.1:2447503-2447522 | None:intergenic | 55.0% |
TCGGAGGAAGCCATCGTGGA+AGG | - | chr1.1:2446441-2446460 | MS.gene24310:CDS | 60.0% | |
!! | CTTGGGTTCGTTGGGCTAGC+AGG | + | chr1.1:2447504-2447523 | None:intergenic | 60.0% |
!! | TGGGTTCGTTGGGCTAGCAG+GGG | + | chr1.1:2447502-2447521 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 2446406 | 2447740 | 2446406 | ID=MS.gene24310 |
chr1.1 | mRNA | 2446406 | 2447740 | 2446406 | ID=MS.gene24310.t1;Parent=MS.gene24310 |
chr1.1 | exon | 2447501 | 2447740 | 2447501 | ID=MS.gene24310.t1.exon1;Parent=MS.gene24310.t1 |
chr1.1 | CDS | 2447501 | 2447740 | 2447501 | ID=cds.MS.gene24310.t1;Parent=MS.gene24310.t1 |
chr1.1 | exon | 2446406 | 2446915 | 2446406 | ID=MS.gene24310.t1.exon2;Parent=MS.gene24310.t1 |
chr1.1 | CDS | 2446406 | 2446915 | 2446406 | ID=cds.MS.gene24310.t1;Parent=MS.gene24310.t1 |
Gene Sequence |
Protein sequence |