Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24378.t1 | XP_024626902.1 | 60.2 | 332 | 78 | 5 | 1 | 323 | 1 | 287 | 7.40E-97 | 364 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24378.t1 | Q9LVA1 | 30.6 | 173 | 111 | 6 | 11 | 180 | 13 | 179 | 5.3e-11 | 70.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24378.t1 | G7I4G0 | 80.7 | 233 | 25 | 4 | 98 | 330 | 5 | 217 | 1.6e-93 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24378.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24378.t1 | MTR_1g019820 | 80.687 | 233 | 25 | 4 | 98 | 330 | 5 | 217 | 2.47e-123 | 353 |
| MS.gene24378.t1 | MTR_1g045470 | 51.906 | 341 | 116 | 10 | 1 | 323 | 1 | 311 | 2.76e-100 | 298 |
| MS.gene24378.t1 | MTR_7g116460 | 70.000 | 210 | 48 | 2 | 1 | 203 | 1 | 202 | 2.83e-97 | 286 |
| MS.gene24378.t1 | MTR_1g053575 | 45.915 | 355 | 114 | 9 | 1 | 323 | 1 | 309 | 4.28e-91 | 275 |
| MS.gene24378.t1 | MTR_7g100990 | 35.032 | 157 | 87 | 5 | 11 | 159 | 17 | 166 | 2.63e-18 | 84.7 |
| MS.gene24378.t1 | MTR_7g005280 | 32.099 | 162 | 98 | 4 | 11 | 170 | 21 | 172 | 2.18e-17 | 80.9 |
| MS.gene24378.t1 | MTR_2g093810 | 29.614 | 233 | 122 | 9 | 11 | 209 | 20 | 244 | 9.87e-14 | 71.2 |
| MS.gene24378.t1 | MTR_4g089135 | 34.109 | 129 | 76 | 4 | 11 | 137 | 21 | 142 | 6.05e-13 | 69.3 |
| MS.gene24378.t1 | MTR_8g094580 | 31.034 | 232 | 122 | 12 | 11 | 215 | 13 | 233 | 2.01e-12 | 67.0 |
| MS.gene24378.t1 | MTR_2g080010 | 29.630 | 162 | 92 | 5 | 11 | 157 | 21 | 175 | 3.61e-12 | 67.0 |
| MS.gene24378.t1 | MTR_1g096430 | 26.316 | 209 | 140 | 7 | 11 | 217 | 13 | 209 | 5.31e-12 | 66.2 |
| MS.gene24378.t1 | MTR_2157s0010 | 26.794 | 209 | 121 | 9 | 11 | 205 | 14 | 204 | 6.45e-12 | 65.5 |
| MS.gene24378.t1 | MTR_4g081870 | 30.000 | 180 | 107 | 7 | 11 | 182 | 15 | 183 | 8.75e-12 | 65.1 |
| MS.gene24378.t1 | MTR_5g041940 | 31.613 | 155 | 89 | 6 | 11 | 157 | 9 | 154 | 1.36e-11 | 64.3 |
| MS.gene24378.t1 | MTR_3g096140 | 31.250 | 160 | 97 | 8 | 11 | 165 | 13 | 164 | 1.54e-11 | 64.3 |
| MS.gene24378.t1 | MTR_3g096140 | 31.250 | 160 | 97 | 8 | 11 | 165 | 13 | 164 | 2.31e-11 | 64.3 |
| MS.gene24378.t1 | MTR_3g088110 | 32.680 | 153 | 82 | 8 | 11 | 154 | 13 | 153 | 2.35e-11 | 63.9 |
| MS.gene24378.t1 | MTR_3g109340 | 26.562 | 192 | 127 | 6 | 11 | 195 | 28 | 212 | 3.33e-11 | 63.9 |
| MS.gene24378.t1 | MTR_8g093580 | 30.189 | 159 | 100 | 7 | 11 | 165 | 12 | 163 | 5.12e-11 | 63.9 |
| MS.gene24378.t1 | MTR_8g076110 | 27.374 | 179 | 117 | 7 | 11 | 182 | 12 | 184 | 8.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24378.t1 | AT5G62380 | 32.895 | 152 | 93 | 6 | 11 | 159 | 13 | 158 | 1.95e-14 | 73.6 |
| MS.gene24378.t1 | AT5G62380 | 32.895 | 152 | 93 | 6 | 11 | 159 | 13 | 158 | 1.95e-14 | 73.6 |
| MS.gene24378.t1 | AT5G13180 | 34.014 | 147 | 84 | 5 | 11 | 154 | 20 | 156 | 1.96e-14 | 72.4 |
| MS.gene24378.t1 | AT3G15510 | 28.191 | 188 | 106 | 7 | 11 | 182 | 23 | 197 | 2.51e-13 | 70.5 |
| MS.gene24378.t1 | AT1G77450 | 31.788 | 151 | 86 | 6 | 11 | 154 | 16 | 156 | 1.70e-12 | 67.0 |
| MS.gene24378.t1 | AT3G61910 | 26.316 | 209 | 120 | 10 | 11 | 192 | 17 | 218 | 3.16e-12 | 67.0 |
| MS.gene24378.t1 | AT3G10480 | 33.962 | 159 | 82 | 9 | 11 | 158 | 33 | 179 | 7.03e-12 | 66.6 |
| MS.gene24378.t1 | AT5G08790 | 34.194 | 155 | 79 | 8 | 11 | 154 | 13 | 155 | 8.09e-12 | 65.5 |
| MS.gene24378.t1 | AT3G10480 | 33.766 | 154 | 88 | 8 | 11 | 158 | 33 | 178 | 1.45e-11 | 65.5 |
| MS.gene24378.t1 | AT3G04070 | 31.677 | 161 | 89 | 8 | 11 | 157 | 16 | 169 | 3.56e-11 | 63.9 |
| MS.gene24378.t1 | AT3G15170 | 31.333 | 150 | 90 | 5 | 11 | 154 | 26 | 168 | 4.18e-11 | 63.5 |
| MS.gene24378.t1 | AT4G27410 | 32.258 | 155 | 84 | 6 | 11 | 157 | 20 | 161 | 4.40e-11 | 63.2 |
| MS.gene24378.t1 | AT1G32770 | 32.768 | 177 | 91 | 9 | 11 | 172 | 22 | 185 | 5.85e-11 | 63.2 |
| MS.gene24378.t1 | AT1G12260 | 30.719 | 153 | 95 | 7 | 11 | 159 | 13 | 158 | 6.33e-11 | 63.2 |
| MS.gene24378.t1 | AT4G36160 | 30.864 | 162 | 100 | 7 | 11 | 167 | 20 | 174 | 6.41e-11 | 63.2 |
| MS.gene24378.t1 | AT4G36160 | 30.864 | 162 | 100 | 7 | 11 | 167 | 16 | 170 | 6.74e-11 | 63.2 |
| MS.gene24378.t1 | AT4G36160 | 30.864 | 162 | 100 | 7 | 11 | 167 | 16 | 170 | 6.74e-11 | 63.2 |
| MS.gene24378.t1 | AT1G12260 | 30.719 | 153 | 95 | 7 | 11 | 159 | 13 | 158 | 8.02e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTGATTTCTTGAATT+TGG | 0.087662 | 1.1:+3326682 | None:intergenic |
| CCACCATTTGATTGACATTT+TGG | 0.106202 | 1.1:+3327219 | None:intergenic |
| GTTCTTGAATATGATTTATT+TGG | 0.182094 | 1.1:-3329866 | MS.gene24378:CDS |
| CAAAGAATCCTTGGGAGATT+TGG | 0.196255 | 1.1:-3329838 | MS.gene24378:CDS |
| AGTGGGAGATTTCTTCTTTA+AGG | 0.222616 | 1.1:+3329760 | None:intergenic |
| CCAGAAAAGACCGTGGTTCT+TGG | 0.260366 | 1.1:-3327165 | MS.gene24378:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.318962 | 1.1:-3329837 | MS.gene24378:CDS |
| TGGAAATATCAAGATTGATT+TGG | 0.320688 | 1.1:-3326656 | MS.gene24378:CDS |
| TTGATTCGTACAATTGGAAT+TGG | 0.348604 | 1.1:-3329728 | MS.gene24378:CDS |
| TTCAAGAACATTGATATAGT+TGG | 0.354618 | 1.1:+3329880 | None:intergenic |
| TCATCAAGTGAGAATTTGAT+TGG | 0.398760 | 1.1:+3329235 | None:intergenic |
| AAACGCTTGATTCGTACAAT+TGG | 0.407900 | 1.1:-3329734 | MS.gene24378:CDS |
| TTGGTATCACAAAGAATCCT+TGG | 0.412757 | 1.1:-3329847 | MS.gene24378:CDS |
| ATCTTTGATTAACAATGCTT+CGG | 0.415664 | 1.1:-3329561 | MS.gene24378:intron |
| TAGCAATGTTTGCCAGGATT+GGG | 0.417981 | 1.1:+3326469 | None:intergenic |
| ATAGCAATGTTTGCCAGGAT+TGG | 0.423974 | 1.1:+3326468 | None:intergenic |
| TCAAGAACATTGATATAGTT+GGG | 0.434618 | 1.1:+3329881 | None:intergenic |
| AGTATGGTAACTTACAGATA+TGG | 0.443956 | 1.1:+3329155 | None:intergenic |
| GAACCAAAATGTCAATCAAA+TGG | 0.458333 | 1.1:-3327222 | MS.gene24378:CDS |
| TCAAGAAATCAACTTGATAG+TGG | 0.460070 | 1.1:-3326676 | MS.gene24378:CDS |
| TAAACATAGCAATGTTTGCC+AGG | 0.462499 | 1.1:+3326463 | None:intergenic |
| CAAGGAAAGACAGTTGTTCC+CGG | 0.469375 | 1.1:-3329192 | MS.gene24378:CDS |
| ACAAATAATACTTACAATGT+TGG | 0.484031 | 1.1:+3327128 | None:intergenic |
| TCTGCATAGAACATAATTGC+TGG | 0.484592 | 1.1:+3329311 | None:intergenic |
| ATGAAGATGGTGATATCTCT+TGG | 0.494027 | 1.1:-3326567 | MS.gene24378:CDS |
| ACGAATCAAGCGTTTACTAG+TGG | 0.496910 | 1.1:+3329742 | None:intergenic |
| GGAGAAAGGTGGGAAATACT+TGG | 0.497376 | 1.1:-3327188 | MS.gene24378:CDS |
| AATCAAATGGTGGACACAAA+AGG | 0.500915 | 1.1:-3327209 | MS.gene24378:CDS |
| TGGTATCACAAAGAATCCTT+GGG | 0.502644 | 1.1:-3329846 | MS.gene24378:CDS |
| ATTGAAATGATTCCCAATCC+TGG | 0.512846 | 1.1:-3326481 | MS.gene24378:CDS |
| AATTGTAAACTTTATTGTAG+AGG | 0.517878 | 1.1:+3329912 | None:intergenic |
| AAGAGTAACACTTCTGAAGA+TGG | 0.525582 | 1.1:-3329617 | MS.gene24378:CDS |
| AGTATAGTTGACAAAGAGAC+TGG | 0.529604 | 1.1:-3329677 | MS.gene24378:CDS |
| ATTATAAACAAAGATGAAGA+TGG | 0.538976 | 1.1:-3326580 | MS.gene24378:CDS |
| TCTCACTTGATGAATAGCAT+TGG | 0.540753 | 1.1:-3329225 | MS.gene24378:CDS |
| AGGAAGGTTAATCGAAGAGG+AGG | 0.555973 | 1.1:-3326506 | MS.gene24378:CDS |
| AACTCTTCCCAAATCTCCCA+AGG | 0.556547 | 1.1:+3329830 | None:intergenic |
| CGAATCAAGCGTTTACTAGT+GGG | 0.567217 | 1.1:+3329743 | None:intergenic |
| CGAAGAAGTTCACCATCTGA+AGG | 0.571056 | 1.1:+3329941 | None:intergenic |
| GAACTCATAGAGGCGAATGA+AGG | 0.573007 | 1.1:-3326526 | MS.gene24378:CDS |
| TTTAGGACATCATTGTTTCG+AGG | 0.573378 | 1.1:-3327260 | MS.gene24378:intron |
| AAAGAGACTGGCCAAACCCT+AGG | 0.583006 | 1.1:-3329665 | MS.gene24378:CDS |
| ACACTTCTGAAGATGGTGGA+TGG | 0.587791 | 1.1:-3329610 | MS.gene24378:CDS |
| ACATTGATATAGTTGGGCAC+TGG | 0.596165 | 1.1:+3329887 | None:intergenic |
| TGGTGGACACAAAAGGAGAA+AGG | 0.597243 | 1.1:-3327202 | MS.gene24378:CDS |
| GACAGTTGTTCCCGGACCTG+CGG | 0.611545 | 1.1:-3329184 | MS.gene24378:CDS |
| CCAAAATGTCAATCAAATGG+TGG | 0.617859 | 1.1:-3327219 | MS.gene24378:CDS |
| TCATAGAGGCGAATGAAGGA+AGG | 0.619859 | 1.1:-3326522 | MS.gene24378:CDS |
| TGTTAATCAAAGATATGTCA+AGG | 0.619881 | 1.1:+3329570 | None:intergenic |
| GGACACAAAAGGAGAAAGGT+GGG | 0.621854 | 1.1:-3327198 | MS.gene24378:CDS |
| GTACAATTGGAATTGGTACG+TGG | 0.632001 | 1.1:-3329721 | MS.gene24378:CDS |
| AGTAACACTTCTGAAGATGG+TGG | 0.632536 | 1.1:-3329614 | MS.gene24378:CDS |
| AGCATTGGACAAGATAAGCA+AGG | 0.636949 | 1.1:-3329210 | MS.gene24378:CDS |
| TGGACACAAAAGGAGAAAGG+TGG | 0.644978 | 1.1:-3327199 | MS.gene24378:CDS |
| AAGTGTTACTCTTCTCAAAG+CGG | 0.648652 | 1.1:+3329627 | None:intergenic |
| TGAAGGAAGGTTAATCGAAG+AGG | 0.648808 | 1.1:-3326509 | MS.gene24378:CDS |
| TACAATTGGAATTGGTACGT+GGG | 0.659468 | 1.1:-3329720 | MS.gene24378:CDS |
| ACGTGGGAAGCTGAAGACAC+CGG | 0.664319 | 1.1:-3329704 | MS.gene24378:CDS |
| AGCTTTAAGTCCAAGAACCA+CGG | 0.675233 | 1.1:+3327155 | None:intergenic |
| TAAAAGTGCCAATACGACAG+AGG | 0.688062 | 1.1:-3326632 | MS.gene24378:CDS |
| TACTTGGCCAGAAAAGACCG+TGG | 0.736153 | 1.1:-3327172 | MS.gene24378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTAATACTATTAATT+TGG | + | chr1.1:3328619-3328638 | None:intergenic | 10.0% |
| !! | ATGTAAAAAAAAAAAAGATT+TGG | + | chr1.1:3329040-3329059 | None:intergenic | 10.0% |
| !!! | AAAAAAAATAGAAATTTGTT+CGG | + | chr1.1:3328453-3328472 | None:intergenic | 10.0% |
| !!! | AAATTGTTTAAAAGTATAAT+TGG | - | chr1.1:3327974-3327993 | MS.gene24378:intron | 10.0% |
| !!! | AACAATATTTTTTATGAAAT+TGG | - | chr1.1:3327510-3327529 | MS.gene24378:intron | 10.0% |
| !!! | AATTGTTTAAAAGTATAATT+GGG | - | chr1.1:3327975-3327994 | MS.gene24378:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | + | chr1.1:3327901-3327920 | None:intergenic | 10.0% |
| !!! | GATATAGATATATATATTTT+TGG | - | chr1.1:3328254-3328273 | MS.gene24378:intron | 10.0% |
| !! | AATTATCATTACATATAGAA+AGG | + | chr1.1:3329121-3329140 | None:intergenic | 15.0% |
| !! | ATATAATCAAATTCAAATCT+GGG | + | chr1.1:3328843-3328862 | None:intergenic | 15.0% |
| !! | GTTAAAATAGATCAAATAAA+TGG | + | chr1.1:3329560-3329579 | None:intergenic | 15.0% |
| !! | TGGGTAAAAAAATTAAAATT+CGG | + | chr1.1:3328824-3328843 | None:intergenic | 15.0% |
| !!! | ATTATTATTATTGTTGTTGT+TGG | - | chr1.1:3328373-3328392 | MS.gene24378:intron | 15.0% |
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | + | chr1.1:3327178-3327197 | None:intergenic | 15.0% |
| !!! | TAACAAAAAACAAATTTTGT+TGG | - | chr1.1:3328576-3328595 | MS.gene24378:intron | 15.0% |
| !! | AAAATTGCTAGCAATAATAA+TGG | + | chr1.1:3328540-3328559 | None:intergenic | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | + | chr1.1:3326969-3326988 | None:intergenic | 20.0% |
| !! | AATCAAGCTAACATAAAAAA+AGG | + | chr1.1:3327462-3327481 | None:intergenic | 20.0% |
| !! | AATTGTAAACTTTATTGTAG+AGG | + | chr1.1:3326530-3326549 | None:intergenic | 20.0% |
| !! | ACAAATAATACTTACAATGT+TGG | + | chr1.1:3329314-3329333 | None:intergenic | 20.0% |
| !! | ATACTAAGTTTATCCTAATT+AGG | - | chr1.1:3327009-3327028 | MS.gene24378:intron | 20.0% |
| !! | ATCAAGCTAACATAAAAAAA+GGG | + | chr1.1:3327461-3327480 | None:intergenic | 20.0% |
| !! | ATTATAAACAAAGATGAAGA+TGG | - | chr1.1:3329859-3329878 | MS.gene24378:CDS | 20.0% |
| !! | ATTGTTTGAATAATGTGTTT+GGG | + | chr1.1:3329634-3329653 | None:intergenic | 20.0% |
| !! | CTAAATCTATATACTTGAAT+AGG | - | chr1.1:3328764-3328783 | MS.gene24378:intron | 20.0% |
| !! | GATATAATCAAATTCAAATC+TGG | + | chr1.1:3328844-3328863 | None:intergenic | 20.0% |
| !! | GATTTGAATTTGATTATATC+CGG | - | chr1.1:3328844-3328863 | MS.gene24378:intron | 20.0% |
| !! | GTTCTTGAATATGATTTATT+TGG | - | chr1.1:3326573-3326592 | MS.gene24378:CDS | 20.0% |
| !! | TAAAAGTTACAATTATTCCT+TGG | - | chr1.1:3327061-3327080 | MS.gene24378:intron | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | + | chr1.1:3327001-3327020 | None:intergenic | 20.0% |
| !! | TACTAAGTTTATCCTAATTA+GGG | - | chr1.1:3327010-3327029 | MS.gene24378:intron | 20.0% |
| !! | TATATATATTAGCGAAAAGT+CGG | - | chr1.1:3327712-3327731 | MS.gene24378:intron | 20.0% |
| !! | TCAACTAAAAAGAGAAAATT+TGG | - | chr1.1:3328938-3328957 | MS.gene24378:intron | 20.0% |
| !! | TTACCATACTATAATTTGAT+TGG | - | chr1.1:3327297-3327316 | MS.gene24378:intron | 20.0% |
| !!! | ATGTGTTATTTATTTGTTGA+AGG | - | chr1.1:3329348-3329367 | MS.gene24378:intron | 20.0% |
| !!! | GAAAGAAAAAAAAGATTTTG+AGG | + | chr1.1:3327671-3327690 | None:intergenic | 20.0% |
| !!! | GAAATTGGTTTTGATTAAAA+AGG | - | chr1.1:3327525-3327544 | MS.gene24378:intron | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | + | chr1.1:3327172-3327191 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | + | chr1.1:3327173-3327192 | None:intergenic | 20.0% |
| ! | AAAAAATAATTCATGAGGTG+AGG | + | chr1.1:3326964-3326983 | None:intergenic | 25.0% |
| ! | AAAAATAATTCATGAGGTGA+GGG | + | chr1.1:3326963-3326982 | None:intergenic | 25.0% |
| ! | AAAAATTTCAAACCTTCAGA+TGG | - | chr1.1:3326486-3326505 | MS.gene24378:CDS | 25.0% |
| ! | AAGAGAAAAAACAAATACGA+CGG | + | chr1.1:3327438-3327457 | None:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | - | chr1.1:3326878-3326897 | MS.gene24378:intron | 25.0% |
| ! | CAATAAAAAGAGTGGAAAAA+TGG | + | chr1.1:3327750-3327769 | None:intergenic | 25.0% |
| ! | CATTGTTTGAATAATGTGTT+TGG | + | chr1.1:3329635-3329654 | None:intergenic | 25.0% |
| ! | GAAAAATCTAACAAAGAAGA+TGG | - | chr1.1:3329829-3329848 | MS.gene24378:CDS | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | + | chr1.1:3327877-3327896 | None:intergenic | 25.0% |
| ! | TAACATTTGAACAAGATTAC+CGG | + | chr1.1:3328866-3328885 | None:intergenic | 25.0% |
| ! | TAGCCAATCAAATTATAGTA+TGG | + | chr1.1:3327303-3327322 | None:intergenic | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | + | chr1.1:3326561-3326580 | None:intergenic | 25.0% |
| ! | TGGAAATATCAAGATTGATT+TGG | - | chr1.1:3329783-3329802 | MS.gene24378:CDS | 25.0% |
| ! | TGTTAATCAAAGATATGTCA+AGG | + | chr1.1:3326872-3326891 | None:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | + | chr1.1:3326562-3326581 | None:intergenic | 25.0% |
| ! | TTCACAAATGATCATATGTA+AGG | - | chr1.1:3329407-3329426 | MS.gene24378:intron | 25.0% |
| ! | TTCCTTTATCCCTTAAAAAA+GGG | + | chr1.1:3328043-3328062 | None:intergenic | 25.0% |
| ! | TTTCCTTTATCCCTTAAAAA+AGG | + | chr1.1:3328044-3328063 | None:intergenic | 25.0% |
| !! | AATTTGGATCAATATTTTCC+TGG | + | chr1.1:3329744-3329763 | None:intergenic | 25.0% |
| !! | ATTATTATTGTTGTTGTTGG+TGG | - | chr1.1:3328376-3328395 | MS.gene24378:intron | 25.0% |
| !! | CTTAAACAAGCTTGTTTAAA+AGG | + | chr1.1:3327624-3327643 | None:intergenic | 25.0% |
| !! | CTTTTGCATTCTTGATTTTT+AGG | - | chr1.1:3329162-3329181 | MS.gene24378:intron | 25.0% |
| !! | TTTGGAACAAGAATGAAATT+TGG | - | chr1.1:3328956-3328975 | MS.gene24378:intron | 25.0% |
| !! | TTTTTCCACTCTTTTTATTG+CGG | - | chr1.1:3327750-3327769 | MS.gene24378:intron | 25.0% |
| !!! | AAAGTGATTTTTTTGTGTGT+GGG | - | chr1.1:3327358-3327377 | MS.gene24378:intron | 25.0% |
| !!! | AGAAAAAAAAGATTTTGAGG+TGG | + | chr1.1:3327668-3327687 | None:intergenic | 25.0% |
| !!! | AGTTTGTTACCCTTTTTTAA+GGG | - | chr1.1:3328031-3328050 | MS.gene24378:intron | 25.0% |
| !!! | CACCTCATGAATTATTTTTT+TGG | - | chr1.1:3326964-3326983 | MS.gene24378:intron | 25.0% |
| !!! | GGACTATGATTTACTTTTTA+AGG | + | chr1.1:3329539-3329558 | None:intergenic | 25.0% |
| !!! | GTTTCTTTGTGATTTTTTTG+TGG | - | chr1.1:3328413-3328432 | MS.gene24378:intron | 25.0% |
| !!! | TAAAGTGATTTTTTTGTGTG+TGG | - | chr1.1:3327357-3327376 | MS.gene24378:intron | 25.0% |
| !!! | TACTTTTTAAGGTGAATAAG+TGG | + | chr1.1:3329528-3329547 | None:intergenic | 25.0% |
| !!! | TAGTTTGTTACCCTTTTTTA+AGG | - | chr1.1:3328030-3328049 | MS.gene24378:intron | 25.0% |
| !!! | TCAAGTTGATTTCTTGAATT+TGG | + | chr1.1:3329760-3329779 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATTAAAAAGGA+TGG | - | chr1.1:3327529-3327548 | MS.gene24378:intron | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | + | chr1.1:3326757-3326776 | None:intergenic | 25.0% |
| AATATCTCAACAAAATCCCT+GGG | + | chr1.1:3329376-3329395 | None:intergenic | 30.0% | |
| AGAGAAAAAACAAATACGAC+GGG | + | chr1.1:3327437-3327456 | None:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | + | chr1.1:3327287-3327306 | None:intergenic | 30.0% | |
| ATTGTTATATGAAGATGTCG+GGG | - | chr1.1:3329486-3329505 | MS.gene24378:intron | 30.0% | |
| CATTGTTATATGAAGATGTC+GGG | - | chr1.1:3329485-3329504 | MS.gene24378:intron | 30.0% | |
| CCAGAAAATAAACCCTAATT+AGG | + | chr1.1:3327025-3327044 | None:intergenic | 30.0% | |
| GAACCAAAATGTCAATCAAA+TGG | - | chr1.1:3329217-3329236 | MS.gene24378:CDS | 30.0% | |
| GCATTGTTATATGAAGATGT+CGG | - | chr1.1:3329484-3329503 | MS.gene24378:intron | 30.0% | |
| GCTATTTGTATTGAAAGTTG+AGG | - | chr1.1:3328148-3328167 | MS.gene24378:intron | 30.0% | |
| TAATATCTCAACAAAATCCC+TGG | + | chr1.1:3329377-3329396 | None:intergenic | 30.0% | |
| TCAAGAAATCAACTTGATAG+TGG | - | chr1.1:3329763-3329782 | MS.gene24378:CDS | 30.0% | |
| TCATCAAGTGAGAATTTGAT+TGG | + | chr1.1:3327207-3327226 | None:intergenic | 30.0% | |
| TTTATCATGTTCAACTTTGC+TGG | + | chr1.1:3329011-3329030 | None:intergenic | 30.0% | |
| ! | AATGCAGAAGCACAATAATA+AGG | + | chr1.1:3329713-3329732 | None:intergenic | 30.0% |
| ! | ATAACATGTTTTGCCTCTTT+TGG | + | chr1.1:3328201-3328220 | None:intergenic | 30.0% |
| ! | TAACATGTTTTGCCTCTTTT+GGG | + | chr1.1:3328200-3328219 | None:intergenic | 30.0% |
| ! | TTGATTCGTACAATTGGAAT+TGG | - | chr1.1:3326711-3326730 | MS.gene24378:intron | 30.0% |
| !! | CCTAATTAGGGTTTATTTTC+TGG | - | chr1.1:3327022-3327041 | MS.gene24378:intron | 30.0% |
| !!! | GAAACGTTTTTTTAGTCCTA+GGG | + | chr1.1:3326793-3326812 | None:intergenic | 30.0% |
| !!! | TACCCTTTTTTAAGGGATAA+AGG | - | chr1.1:3328038-3328057 | MS.gene24378:intron | 30.0% |
| AAAGAATCCTTGGGAGATTT+GGG | - | chr1.1:3326602-3326621 | MS.gene24378:CDS | 35.0% | |
| AGTATAGTTGACAAAGAGAC+TGG | - | chr1.1:3326762-3326781 | MS.gene24378:intron | 35.0% | |
| AGTGGGAGATTTCTTCTTTA+AGG | + | chr1.1:3326682-3326701 | None:intergenic | 35.0% | |
| ATGAAGATGGTGATATCTCT+TGG | - | chr1.1:3329872-3329891 | MS.gene24378:CDS | 35.0% | |
| ATTGAAATGATTCCCAATCC+TGG | - | chr1.1:3329958-3329977 | MS.gene24378:CDS | 35.0% | |
| CCAAAATGTCAATCAAATGG+TGG | - | chr1.1:3329220-3329239 | MS.gene24378:CDS | 35.0% | |
| GAGAAAAAACAAATACGACG+GGG | + | chr1.1:3327436-3327455 | None:intergenic | 35.0% | |
| TAAACATAGCAATGTTTGCC+AGG | + | chr1.1:3329979-3329998 | None:intergenic | 35.0% | |
| TAAATGTGTGCACAATACCA+AGG | + | chr1.1:3327081-3327100 | None:intergenic | 35.0% | |
| TACAATTGGAATTGGTACGT+GGG | - | chr1.1:3326719-3326738 | MS.gene24378:intron | 35.0% | |
| TACCAAGTGATATATGCACA+CGG | + | chr1.1:3329456-3329475 | None:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | - | chr1.1:3327214-3327233 | MS.gene24378:CDS | 35.0% | |
| TCTGCATAGAACATAATTGC+TGG | + | chr1.1:3327131-3327150 | None:intergenic | 35.0% | |
| TGGTATCACAAAGAATCCTT+GGG | - | chr1.1:3326593-3326612 | MS.gene24378:CDS | 35.0% | |
| TTGGTATCACAAAGAATCCT+TGG | - | chr1.1:3326592-3326611 | MS.gene24378:CDS | 35.0% | |
| ! | AAACGCTTGATTCGTACAAT+TGG | - | chr1.1:3326705-3326724 | MS.gene24378:intron | 35.0% |
| ! | AAGAGTAACACTTCTGAAGA+TGG | - | chr1.1:3326822-3326841 | MS.gene24378:intron | 35.0% |
| ! | AAGTGTTACTCTTCTCAAAG+CGG | + | chr1.1:3326815-3326834 | None:intergenic | 35.0% |
| ! | AGATTTTTCCTCTGTCGTAT+TGG | + | chr1.1:3329818-3329837 | None:intergenic | 35.0% |
| ! | ATTATTGTTGTTGTTGGTGG+TGG | - | chr1.1:3328379-3328398 | MS.gene24378:intron | 35.0% |
| ! | CCACCATTTGATTGACATTT+TGG | + | chr1.1:3329223-3329242 | None:intergenic | 35.0% |
| ! | TGCTGGTCAGCTAAAAATTT+TGG | + | chr1.1:3328994-3329013 | None:intergenic | 35.0% |
| ! | TTATTTGTTGAAGGAACCCA+GGG | - | chr1.1:3329357-3329376 | MS.gene24378:intron | 35.0% |
| ! | TTTAGGACATCATTGTTTCG+AGG | - | chr1.1:3329179-3329198 | MS.gene24378:CDS | 35.0% |
| ! | TTTATTTGTTGAAGGAACCC+AGG | - | chr1.1:3329356-3329375 | MS.gene24378:intron | 35.0% |
| !! | AATCAAATGGTGGACACAAA+AGG | - | chr1.1:3329230-3329249 | MS.gene24378:CDS | 35.0% |
| !!! | GGAAACGTTTTTTTAGTCCT+AGG | + | chr1.1:3326794-3326813 | None:intergenic | 35.0% |
| !!! | GTTTTTTTAGTCCTAGGGTT+TGG | + | chr1.1:3326788-3326807 | None:intergenic | 35.0% |
| AATAATTCATGAGGTGAGGG+TGG | + | chr1.1:3326960-3326979 | None:intergenic | 40.0% | |
| ACATTGATATAGTTGGGCAC+TGG | + | chr1.1:3326555-3326574 | None:intergenic | 40.0% | |
| ACCAAGTGATATATGCACAC+GGG | + | chr1.1:3329455-3329474 | None:intergenic | 40.0% | |
| ACGAATCAAGCGTTTACTAG+TGG | + | chr1.1:3326700-3326719 | None:intergenic | 40.0% | |
| AGAAAATGTCAGCCCAAAAG+AGG | - | chr1.1:3328185-3328204 | MS.gene24378:intron | 40.0% | |
| ATAGCAATGTTTGCCAGGAT+TGG | + | chr1.1:3329974-3329993 | None:intergenic | 40.0% | |
| CAAAGAATCCTTGGGAGATT+TGG | - | chr1.1:3326601-3326620 | MS.gene24378:CDS | 40.0% | |
| CATCACCGCAATAAAAAGAG+TGG | + | chr1.1:3327758-3327777 | None:intergenic | 40.0% | |
| CGAATCAAGCGTTTACTAGT+GGG | + | chr1.1:3326699-3326718 | None:intergenic | 40.0% | |
| GTACAATTGGAATTGGTACG+TGG | - | chr1.1:3326718-3326737 | MS.gene24378:intron | 40.0% | |
| TAGCAATGTTTGCCAGGATT+GGG | + | chr1.1:3329973-3329992 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTAATCGAAG+AGG | - | chr1.1:3329930-3329949 | MS.gene24378:CDS | 40.0% | |
| ! | AGCATTGGACAAGATAAGCA+AGG | - | chr1.1:3327229-3327248 | MS.gene24378:CDS | 40.0% |
| ! | AGTAACACTTCTGAAGATGG+TGG | - | chr1.1:3326825-3326844 | MS.gene24378:intron | 40.0% |
| ! | CTTCTGCATTCTCATTTTCC+AGG | - | chr1.1:3329723-3329742 | MS.gene24378:CDS | 40.0% |
| ! | TTTTGCAAGGGAACTCATAG+AGG | - | chr1.1:3329903-3329922 | MS.gene24378:CDS | 40.0% |
| !! | AGCTTTAAGTCCAAGAACCA+CGG | + | chr1.1:3329287-3329306 | None:intergenic | 40.0% |
| !! | TAAAAGTGCCAATACGACAG+AGG | - | chr1.1:3329807-3329826 | MS.gene24378:CDS | 40.0% |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | - | chr1.1:3327105-3327124 | MS.gene24378:intron | 40.0% |
| AACTCTTCCCAAATCTCCCA+AGG | + | chr1.1:3326612-3326631 | None:intergenic | 45.0% | |
| AGGAAGGTTAATCGAAGAGG+AGG | - | chr1.1:3329933-3329952 | MS.gene24378:CDS | 45.0% | |
| AGTTCCCTTGCAAAAAGCTC+AGG | + | chr1.1:3329898-3329917 | None:intergenic | 45.0% | |
| CAAGGAAAGACAGTTGTTCC+CGG | - | chr1.1:3327247-3327266 | MS.gene24378:CDS | 45.0% | |
| CCAAGTGATATATGCACACG+GGG | + | chr1.1:3329454-3329473 | None:intergenic | 45.0% | |
| CGAAGAAGTTCACCATCTGA+AGG | + | chr1.1:3326501-3326520 | None:intergenic | 45.0% | |
| GAACTCATAGAGGCGAATGA+AGG | - | chr1.1:3329913-3329932 | MS.gene24378:CDS | 45.0% | |
| GGACACAAAAGGAGAAAGGT+GGG | - | chr1.1:3329241-3329260 | MS.gene24378:CDS | 45.0% | |
| GGAGAAAGGTGGGAAATACT+TGG | - | chr1.1:3329251-3329270 | MS.gene24378:CDS | 45.0% | |
| TCATAGAGGCGAATGAAGGA+AGG | - | chr1.1:3329917-3329936 | MS.gene24378:CDS | 45.0% | |
| TGGACACAAAAGGAGAAAGG+TGG | - | chr1.1:3329240-3329259 | MS.gene24378:CDS | 45.0% | |
| ! | TGGTGGACACAAAAGGAGAA+AGG | - | chr1.1:3329237-3329256 | MS.gene24378:CDS | 45.0% |
| ! | TTGGCCTGAGCTTTTTGCAA+GGG | - | chr1.1:3329891-3329910 | MS.gene24378:CDS | 45.0% |
| !! | ACACTTCTGAAGATGGTGGA+TGG | - | chr1.1:3326829-3326848 | MS.gene24378:intron | 45.0% |
| !! | ATTGTTGTTGTTGGTGGTGG+TGG | - | chr1.1:3328382-3328401 | MS.gene24378:intron | 45.0% |
| !!! | GTTTTATTTATTTATTTTTT+TGG | - | chr1.1:3328637-3328656 | MS.gene24378:intron | 5.0% |
| !!! | TTTTATTTAAATACAAAATT+TGG | - | chr1.1:3328907-3328926 | MS.gene24378:intron | 5.0% |
| !!! | TTTTGTATTTAAATAAAATT+TGG | + | chr1.1:3328905-3328924 | None:intergenic | 5.0% |
| CCAGAAAAGACCGTGGTTCT+TGG | - | chr1.1:3329274-3329293 | MS.gene24378:CDS | 50.0% | |
| CCCCGTGTGCATATATCACT+TGG | - | chr1.1:3329451-3329470 | MS.gene24378:intron | 50.0% | |
| TACTTGGCCAGAAAAGACCG+TGG | - | chr1.1:3329267-3329286 | MS.gene24378:CDS | 50.0% | |
| ! | AAAGAGACTGGCCAAACCCT+AGG | - | chr1.1:3326774-3326793 | MS.gene24378:intron | 50.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | + | chr1.1:3327274-3327293 | None:intergenic | 50.0% |
| ! | CCAAGAACCACGGTCTTTTC+TGG | + | chr1.1:3329277-3329296 | None:intergenic | 50.0% |
| ! | CTTGGCCTGAGCTTTTTGCA+AGG | - | chr1.1:3329890-3329909 | MS.gene24378:CDS | 50.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | - | chr1.1:3326735-3326754 | MS.gene24378:intron | 55.0% | |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | + | chr1.1:3327269-3327288 | None:intergenic | 55.0% |
| GACAGTTGTTCCCGGACCTG+CGG | - | chr1.1:3327255-3327274 | MS.gene24378:CDS | 60.0% | |
| ! | ATGGCGTTTTCCGCAGGTCC+GGG | + | chr1.1:3327268-3327287 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 3326462 | 3329999 | 3326462 | ID=MS.gene24378 |
| chr1.1 | mRNA | 3326462 | 3329999 | 3326462 | ID=MS.gene24378.t1;Parent=MS.gene24378 |
| chr1.1 | exon | 3329562 | 3329999 | 3329562 | ID=MS.gene24378.t1.exon1;Parent=MS.gene24378.t1 |
| chr1.1 | CDS | 3329562 | 3329999 | 3329562 | ID=cds.MS.gene24378.t1;Parent=MS.gene24378.t1 |
| chr1.1 | exon | 3329170 | 3329334 | 3329170 | ID=MS.gene24378.t1.exon2;Parent=MS.gene24378.t1 |
| chr1.1 | CDS | 3329170 | 3329334 | 3329170 | ID=cds.MS.gene24378.t1;Parent=MS.gene24378.t1 |
| chr1.1 | exon | 3327143 | 3327277 | 3327143 | ID=MS.gene24378.t1.exon3;Parent=MS.gene24378.t1 |
| chr1.1 | CDS | 3327143 | 3327277 | 3327143 | ID=cds.MS.gene24378.t1;Parent=MS.gene24378.t1 |
| chr1.1 | exon | 3326462 | 3326716 | 3326462 | ID=MS.gene24378.t1.exon4;Parent=MS.gene24378.t1 |
| chr1.1 | CDS | 3326462 | 3326716 | 3326462 | ID=cds.MS.gene24378.t1;Parent=MS.gene24378.t1 |
| Gene Sequence |
| Protein sequence |
