AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24427

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24427.t1 MTR_1g019130 97.872 235 5 0 9 243 2 236 3.81e-174 478
MS.gene24427.t1 MTR_1g019130 97.312 186 5 0 9 194 2 187 9.56e-134 376
MS.gene24427.t1 MTR_8g107210 45.255 137 69 1 29 159 22 158 3.48e-29 112
MS.gene24427.t1 MTR_7g060630 71.642 67 19 0 93 159 4 70 8.46e-29 108
MS.gene24427.t1 MTR_4g084550 68.750 64 20 0 96 159 63 126 2.01e-26 101
MS.gene24427.t1 MTR_4g063735 36.932 176 81 4 97 242 25 200 2.26e-26 103
MS.gene24427.t1 MTR_5g081990 65.152 66 23 0 97 162 33 98 1.30e-25 99.4
MS.gene24427.t1 MTR_5g021930 64.062 64 22 1 96 158 29 92 1.57e-22 94.0
MS.gene24427.t1 MTR_3g088485 40.146 137 60 2 29 159 22 142 8.25e-22 89.0
MS.gene24427.t1 MTR_8g095580 76.923 52 12 0 108 159 93 144 3.55e-21 87.4
MS.gene24427.t1 MTR_2g015000 35.577 104 55 1 56 159 26 117 4.70e-14 71.2
MS.gene24427.t1 MTR_7g025010 46.774 62 33 0 97 158 47 108 2.83e-13 69.3
MS.gene24427.t1 MTR_4g088070 37.778 90 44 1 68 157 12 89 2.17e-12 66.2
MS.gene24427.t1 MTR_3g115620 39.474 76 46 0 97 172 82 157 4.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24427.t1 AT1G46480 52.326 258 92 9 9 243 2 251 8.03e-71 217
MS.gene24427.t1 AT1G46480 58.333 192 61 7 9 189 2 185 9.55e-62 192
MS.gene24427.t1 AT3G18010 42.857 147 74 2 13 159 2 138 7.24e-30 114
MS.gene24427.t1 AT3G11260 56.818 88 33 1 94 176 16 103 1.32e-27 104
MS.gene24427.t1 AT5G59340 61.333 75 29 0 85 159 2 76 6.79e-27 104
MS.gene24427.t1 AT2G28610 68.182 66 21 0 94 159 5 70 1.04e-26 103
MS.gene24427.t1 AT5G05770 63.077 65 24 0 97 161 29 93 1.94e-24 94.7
MS.gene24427.t1 AT2G17950 51.765 85 40 1 96 179 37 121 1.11e-23 97.1
MS.gene24427.t1 AT2G01500 66.667 63 19 1 91 151 53 115 2.28e-21 90.1
MS.gene24427.t1 AT2G33880 38.614 101 52 1 56 156 24 114 4.81e-14 71.2
MS.gene24427.t1 AT2G33880 38.614 101 52 1 56 156 24 114 5.26e-14 70.9
MS.gene24427.t1 AT1G20700 47.541 61 32 0 97 157 33 93 2.87e-13 65.9
MS.gene24427.t1 AT5G45980 46.774 62 33 0 97 158 55 116 4.38e-13 68.2
MS.gene24427.t1 AT1G20710 38.462 91 44 1 104 194 86 164 6.14e-13 65.9
MS.gene24427.t1 AT1G20700 47.541 61 32 0 97 157 95 155 9.85e-13 65.5
MS.gene24427.t1 AT1G20700 47.541 61 32 0 97 157 95 155 1.15e-12 65.5
MS.gene24427.t1 AT4G35550 47.541 61 32 0 97 157 99 159 1.11e-11 63.5

Find 64 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTCACACGTGGATTT+TGG 0.121803 1.1:-3915357 MS.gene24427:CDS
TCTCGCGTGCTTTGTGGTTT+TGG 0.203041 1.1:+3914523 None:intergenic
AAACTCCTTCATCTGCCTTC+TGG 0.237007 1.1:+3913983 None:intergenic
AACTCCTTCATCTGCCTTCT+GGG 0.285945 1.1:+3913984 None:intergenic
CAACTTTGGACACCCCAAAA+AGG 0.296385 1.1:-3914404 MS.gene24427:CDS
ACTAATTCTAGGAGCACTTT+CGG 0.300053 1.1:+3915201 None:intergenic
CTAATTCTAGGAGCACTTTC+GGG 0.314910 1.1:+3915202 None:intergenic
TGTTCTATTTGTTGTGCATT+TGG 0.328080 1.1:+3914606 None:intergenic
ACAAGAACAAATAGGAATAT+TGG 0.328145 1.1:-3914658 MS.gene24427:CDS
GAGGAAGAAAGACTAATTCT+AGG 0.342909 1.1:+3915190 None:intergenic
GGATTCCACCTTGTCCCTCC+TGG 0.366142 1.1:+3914684 None:intergenic
ATCTGCCTTCTGGGTGTAAT+GGG 0.376276 1.1:+3913993 None:intergenic
CTTTAGTACTATTACAACTT+TGG 0.384910 1.1:-3914418 MS.gene24427:CDS
CATCTGCCTTCTGGGTGTAA+TGG 0.398760 1.1:+3913992 None:intergenic
ATTCCTATTTGTTCTTGTGT+TGG 0.415008 1.1:+3914663 None:intergenic
CCTTCGGAGAATACTGTGCC+TGG 0.420549 1.1:+3915703 None:intergenic
AATCCAACACAAGAACAAAT+AGG 0.426122 1.1:-3914666 MS.gene24427:CDS
TTCTCTTCCAAGTACTCAAA+TGG 0.427494 1.1:+3914064 None:intergenic
TTTGTCTCTCGCGTGCTTTG+TGG 0.448508 1.1:+3914517 None:intergenic
TAGGTTGAAACGCATATTCC+AGG 0.450427 1.1:-3914702 MS.gene24427:CDS
TCCACCTTCACCGCAAAGCC+AGG 0.461999 1.1:-3915149 MS.gene24427:intron
GAGTTGGCCATTTGAGTACT+TGG 0.464745 1.1:-3914071 MS.gene24427:CDS
GGTGTTAGAAGTAACATTAT+CGG 0.465029 1.1:+3915261 None:intergenic
CACAGACACAAGTGTGGTGG+TGG 0.469900 1.1:+3914449 None:intergenic
CAAAGTTGTAATAGTACTAA+AGG 0.472738 1.1:+3914419 None:intergenic
AGCAAGTACGGTAAAATTGA+AGG 0.477134 1.1:-3914567 MS.gene24427:CDS
CAACTCCTACTCTTCTTCAA+TGG 0.501838 1.1:+3914088 None:intergenic
AGTGTGGTGGTGGGAGTTCG+AGG 0.518160 1.1:+3914459 None:intergenic
CATGAACCTTCCCTCACACT+TGG 0.520457 1.1:-3915331 MS.gene24427:CDS
TGAACCTGGCTTTGCGGTGA+AGG 0.521265 1.1:+3915145 None:intergenic
GTTGTAATAGTACTAAAGGT+GGG 0.528602 1.1:+3914423 None:intergenic
TGAGATCAAAAGAAAGAGAA+GGG 0.531578 1.1:+3915239 None:intergenic
AGTATATGAACCTGGCTTTG+CGG 0.544738 1.1:+3915139 None:intergenic
ATAGTCCATTGAAGAAGAGT+AGG 0.545832 1.1:-3914093 MS.gene24427:CDS
AAGCAGAAACGTAACAGTCT+TGG 0.547628 1.1:-3914495 MS.gene24427:CDS
ACAGTTCAACTTAGCAAGTA+CGG 0.553808 1.1:-3914579 MS.gene24427:CDS
ATCTTTCTTGTTATCATCAG+AGG 0.556963 1.1:+3915171 None:intergenic
CGCATATTCCAGGAGGGACA+AGG 0.565252 1.1:-3914692 MS.gene24427:CDS
TACACCCAGAAGGCAGATGA+AGG 0.566613 1.1:-3913988 None:intergenic
GTGGGAGTTCGAGGACTATG+AGG 0.567688 1.1:+3914468 None:intergenic
TTGGTCAATGTGCAAAGTAG+AGG 0.568050 1.1:-3914038 MS.gene24427:CDS
TTGAGATCAAAAGAAAGAGA+AGG 0.574637 1.1:+3915238 None:intergenic
CTTCGGAGAATACTGTGCCT+GGG 0.576230 1.1:+3915704 None:intergenic
AGTTGTAATAGTACTAAAGG+TGG 0.581733 1.1:+3914422 None:intergenic
AACGCTTGCAACCAAGTGTG+AGG 0.582297 1.1:+3915320 None:intergenic
GCAAGTACGGTAAAATTGAA+GGG 0.588273 1.1:-3914566 MS.gene24427:CDS
CATTGAAGAAGAGTAGGAGT+TGG 0.590517 1.1:-3914087 MS.gene24427:CDS
ACCTGGCTTTGCGGTGAAGG+TGG 0.590968 1.1:+3915148 None:intergenic
TGTAATAGTACTAAAGGTGG+GGG 0.603492 1.1:+3914425 None:intergenic
TTGTAATAGTACTAAAGGTG+GGG 0.606911 1.1:+3914424 None:intergenic
TTGGAGATGTTATACAGAGG+TGG 0.611718 1.1:-3914639 MS.gene24427:CDS
GAGTTCGAGGACTATGAGGA+AGG 0.633348 1.1:+3914472 None:intergenic
ACGCTTGCAACCAAGTGTGA+GGG 0.656705 1.1:+3915321 None:intergenic
TTGAAACGCATATTCCAGGA+GGG 0.657126 1.1:-3914698 MS.gene24427:CDS
ACAGACACAAGTGTGGTGGT+GGG 0.659851 1.1:+3914450 None:intergenic
CCAGGCACAGTATTCTCCGA+AGG 0.665764 1.1:-3915703 MS.gene24427:intron
GGACACAGACACAAGTGTGG+TGG 0.666759 1.1:+3914446 None:intergenic
CTGGCAGCTGGAATGAACCC+AGG 0.669016 1.1:-3915721 None:intergenic
GAGATCAAAAGAAAGAGAAG+GGG 0.671823 1.1:+3915240 None:intergenic
TTGCAACCAAGTGTGAGGGA+AGG 0.674259 1.1:+3915325 None:intergenic
GTTGAAACGCATATTCCAGG+AGG 0.708848 1.1:-3914699 MS.gene24427:CDS
ATATTGGAGATGTTATACAG+AGG 0.712720 1.1:-3914642 MS.gene24427:CDS
AAAGTGCATCAATTCACACG+TGG 0.742454 1.1:-3915364 MS.gene24427:intron
ATATTCCAGGAGGGACAAGG+TGG 0.756182 1.1:-3914689 MS.gene24427:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGACTTAATTAAAAAAAAAA+TGG + chr1.1:3914608-3914627 None:intergenic 10.0%
!!! ATAATACTAATAAAGTATTT+TGG - chr1.1:3914762-3914781 MS.gene24427:intron 10.0%
!!! TCTTTTAAAAACTTTTGATT+TGG - chr1.1:3914929-3914948 MS.gene24427:intron 15.0%
!! ATTAACTTCATGTAACATAT+AGG - chr1.1:3914719-3914738 MS.gene24427:intron 20.0%
!! TCTATTATTTGTGTATGTAT+AGG - chr1.1:3914979-3914998 MS.gene24427:intron 20.0%
!! TGATGAAGAAATAAATGATA+GGG + chr1.1:3914270-3914289 None:intergenic 20.0%
!! TTAACTTCATGTAACATATA+GGG - chr1.1:3914720-3914739 MS.gene24427:intron 20.0%
!!! GTGTTATTAGAAGAAATTTT+AGG + chr1.1:3914420-3914439 None:intergenic 20.0%
!!! GTTTAATATAATTTTCCACA+CGG + chr1.1:3914295-3914314 None:intergenic 20.0%
!!! TAATTTAAAACCATGAACAA+TGG - chr1.1:3915472-3915491 MS.gene24427:intron 20.0%
!!! TCGAATATGTTACATTTTTT+TGG - chr1.1:3915552-3915571 MS.gene24427:intron 20.0%
!!! TTGTTCATGGTTTTAAATTA+CGG + chr1.1:3915472-3915491 None:intergenic 20.0%
!!! TTTTTGATTAAAAGGAAAGT+AGG - chr1.1:3915445-3915464 MS.gene24427:intron 20.0%
! AATTAGTATACCATTGTTCA+TGG + chr1.1:3915485-3915504 None:intergenic 25.0%
! ACAAGAACAAATAGGAATAT+TGG - chr1.1:3915042-3915061 MS.gene24427:intron 25.0%
! CAAAGTTGTAATAGTACTAA+AGG + chr1.1:3915284-3915303 None:intergenic 25.0%
! CTGATGAAGAAATAAATGAT+AGG + chr1.1:3914271-3914290 None:intergenic 25.0%
! CTTTAGTACTATTACAACTT+TGG - chr1.1:3915282-3915301 MS.gene24427:CDS 25.0%
! TACATCTGATAACTGAAATT+CGG + chr1.1:3914807-3914826 None:intergenic 25.0%
! TCAACTTAAGCTATATATTG+TGG - chr1.1:3915342-3915361 MS.gene24427:CDS 25.0%
!! AAACTTACATTTTGTACCTT+CGG + chr1.1:3914016-3914035 None:intergenic 25.0%
!! AATATGAACATACCCTTTTT+GGG + chr1.1:3915312-3915331 None:intergenic 25.0%
!! ATTTTGTCGTGTTTTACTTT+TGG - chr1.1:3914083-3914102 MS.gene24427:CDS 25.0%
!! CGACAATATAAAGGATTTTA+AGG + chr1.1:3915390-3915409 None:intergenic 25.0%
!! CTATAATCTTGTTTGTTACT+AGG - chr1.1:3915511-3915530 MS.gene24427:intron 25.0%
!!! ACTAATAAAGTATTTTGGTC+CGG - chr1.1:3914767-3914786 MS.gene24427:intron 25.0%
!!! ACTTTTGGTTTAATTTAGAG+AGG - chr1.1:3914098-3914117 MS.gene24427:CDS 25.0%
!!! CTTTTGGTTTAATTTAGAGA+GGG - chr1.1:3914099-3914118 MS.gene24427:CDS 25.0%
!!! TATGTTACATTTTTTTGGAC+AGG - chr1.1:3915557-3915576 MS.gene24427:intron 25.0%
AAGGGAAAAATGTGTTCTAT+TGG - chr1.1:3915152-3915171 MS.gene24427:CDS 30.0%
AATCCAACACAAGAACAAAT+AGG - chr1.1:3915034-3915053 MS.gene24427:intron 30.0%
AGTACTTGGAAGAGAAAAAT+TGG - chr1.1:3915643-3915662 MS.gene24427:intron 30.0%
AGTTGTAATAGTACTAAAGG+TGG + chr1.1:3915281-3915300 None:intergenic 30.0%
ATATTGGAGATGTTATACAG+AGG - chr1.1:3915058-3915077 MS.gene24427:intron 30.0%
ATTCCTATTTGTTCTTGTGT+TGG + chr1.1:3915040-3915059 None:intergenic 30.0%
GGTGTTAGAAGTAACATTAT+CGG + chr1.1:3914442-3914461 None:intergenic 30.0%
GTTGTAATAGTACTAAAGGT+GGG + chr1.1:3915280-3915299 None:intergenic 30.0%
TGAGATCAAAAGAAAGAGAA+GGG + chr1.1:3914464-3914483 None:intergenic 30.0%
TTGAGATCAAAAGAAAGAGA+AGG + chr1.1:3914465-3914484 None:intergenic 30.0%
TTGTAATAGTACTAAAGGTG+GGG + chr1.1:3915279-3915298 None:intergenic 30.0%
! ACAGTGAAAAGTATACAAAG+TGG + chr1.1:3914188-3914207 None:intergenic 30.0%
! ATATGAACATACCCTTTTTG+GGG + chr1.1:3915311-3915330 None:intergenic 30.0%
! ATCTTTCTTGTTATCATCAG+AGG + chr1.1:3914532-3914551 None:intergenic 30.0%
! CAGTGAAAAGTATACAAAGT+GGG + chr1.1:3914187-3914206 None:intergenic 30.0%
! GAATATGAACATACCCTTTT+TGG + chr1.1:3915313-3915332 None:intergenic 30.0%
!! TGTTCTATTTGTTGTGCATT+TGG + chr1.1:3915097-3915116 None:intergenic 30.0%
!!! CTAATAAAGTATTTTGGTCC+GGG - chr1.1:3914768-3914787 MS.gene24427:intron 30.0%
AATTATACCACTCTACTGCA+TGG + chr1.1:3914637-3914656 None:intergenic 35.0%
ACAGTTCAACTTAGCAAGTA+CGG - chr1.1:3915121-3915140 MS.gene24427:intron 35.0%
AGCAAGTACGGTAAAATTGA+AGG - chr1.1:3915133-3915152 MS.gene24427:intron 35.0%
AGTATACAAAGTGGGAAATG+AGG + chr1.1:3914179-3914198 None:intergenic 35.0%
ATAGTCCATTGAAGAAGAGT+AGG - chr1.1:3915607-3915626 MS.gene24427:intron 35.0%
GAGATCAAAAGAAAGAGAAG+GGG + chr1.1:3914463-3914482 None:intergenic 35.0%
GAGGAAGAAAGACTAATTCT+AGG + chr1.1:3914513-3914532 None:intergenic 35.0%
GCAAGTACGGTAAAATTGAA+GGG - chr1.1:3915134-3915153 MS.gene24427:intron 35.0%
TAGAGCTTAGTATATGAACC+TGG + chr1.1:3914572-3914591 None:intergenic 35.0%
TGTAATAGTACTAAAGGTGG+GGG + chr1.1:3915278-3915297 None:intergenic 35.0%
TTCTCTTCCAAGTACTCAAA+TGG + chr1.1:3915639-3915658 None:intergenic 35.0%
! ATCAATTCACACGTGGATTT+TGG - chr1.1:3914343-3914362 MS.gene24427:intron 35.0%
! TCAATTCACACGTGGATTTT+GGG - chr1.1:3914344-3914363 MS.gene24427:intron 35.0%
! TTCGGTTCAACAATTTTTCC+CGG + chr1.1:3914789-3914808 None:intergenic 35.0%
!! ACTAATTCTAGGAGCACTTT+CGG + chr1.1:3914502-3914521 None:intergenic 35.0%
!! GAAGAAATTTTAGGTGCAAG+AGG + chr1.1:3914411-3914430 None:intergenic 35.0%
AAAGTGCATCAATTCACACG+TGG - chr1.1:3914336-3914355 MS.gene24427:intron 40.0%
AACTTTGGACACCCCAAAAA+GGG - chr1.1:3915297-3915316 MS.gene24427:CDS 40.0%
AAGCAGAAACGTAACAGTCT+TGG - chr1.1:3915205-3915224 MS.gene24427:CDS 40.0%
AGAACCAAGACCAAATGATG+AGG + chr1.1:3914145-3914164 None:intergenic 40.0%
AGTAACTCTCGAGTCTCATA+TGG + chr1.1:3914878-3914897 None:intergenic 40.0%
CAACTCCTACTCTTCTTCAA+TGG + chr1.1:3915615-3915634 None:intergenic 40.0%
CATTGAAGAAGAGTAGGAGT+TGG - chr1.1:3915613-3915632 MS.gene24427:intron 40.0%
CGAGTCTCATATGGAAAAAG+AGG + chr1.1:3914869-3914888 None:intergenic 40.0%
TATTTCTTCATCAGACCGTG+TGG - chr1.1:3914277-3914296 MS.gene24427:intron 40.0%
TTGAAACGCATATTCCAGGA+GGG - chr1.1:3915002-3915021 MS.gene24427:intron 40.0%
TTGGAGATGTTATACAGAGG+TGG - chr1.1:3915061-3915080 MS.gene24427:intron 40.0%
TTGGTCAATGTGCAAAGTAG+AGG - chr1.1:3915662-3915681 MS.gene24427:intron 40.0%
! TAGCTGCGTCGACAATATAA+AGG + chr1.1:3915399-3915418 None:intergenic 40.0%
! TAGGTTGAAACGCATATTCC+AGG - chr1.1:3914998-3915017 MS.gene24427:intron 40.0%
! TTTTGGACAGGTGCAAGTAA+TGG - chr1.1:3915569-3915588 MS.gene24427:intron 40.0%
!! AGTATATGAACCTGGCTTTG+CGG + chr1.1:3914564-3914583 None:intergenic 40.0%
!! CATTTGGTCTTGGTTCTTAC+AGG - chr1.1:3914148-3914167 MS.gene24427:intron 40.0%
!! CTAATTCTAGGAGCACTTTC+GGG + chr1.1:3914501-3914520 None:intergenic 40.0%
AGGTCTCTGCAACGACATTT+CGG + chr1.1:3915370-3915389 None:intergenic 45.0%
ATACCACTCTACTGCATGGA+TGG + chr1.1:3914633-3914652 None:intergenic 45.0%
ATCTGCCTTCTGGGTGTAAT+GGG + chr1.1:3915710-3915729 None:intergenic 45.0%
CAACTTTGGACACCCCAAAA+AGG - chr1.1:3915296-3915315 MS.gene24427:CDS 45.0%
GAGTTGGCCATTTGAGTACT+TGG - chr1.1:3915629-3915648 MS.gene24427:intron 45.0%
GTCAACTGCACCTCATCATT+TGG - chr1.1:3914132-3914151 MS.gene24427:intron 45.0%
GTTGAAACGCATATTCCAGG+AGG - chr1.1:3915001-3915020 MS.gene24427:intron 45.0%
TGCACCTCATCATTTGGTCT+TGG - chr1.1:3914138-3914157 MS.gene24427:intron 45.0%
! CTTTTCCCATTACACCCAGA+AGG - chr1.1:3915702-3915721 MS.gene24427:intron 45.0%
!! TCAAAAAAATAAATAAATTA+CGG + chr1.1:3915432-3915451 None:intergenic 5.0%
!!! TATTTATTTTTTTGATTAAA+AGG - chr1.1:3915437-3915456 MS.gene24427:intron 5.0%
AACGCTTGCAACCAAGTGTG+AGG + chr1.1:3914383-3914402 None:intergenic 50.0%
ACAGACACAAGTGTGGTGGT+GGG + chr1.1:3915253-3915272 None:intergenic 50.0%
ACGCTTGCAACCAAGTGTGA+GGG + chr1.1:3914382-3914401 None:intergenic 50.0%
ATATTCCAGGAGGGACAAGG+TGG - chr1.1:3915011-3915030 MS.gene24427:intron 50.0%
CATCTGCCTTCTGGGTGTAA+TGG + chr1.1:3915711-3915730 None:intergenic 50.0%
CATGAACCTTCCCTCACACT+TGG - chr1.1:3914369-3914388 MS.gene24427:intron 50.0%
CTTCGGAGAATACTGTGCCT+GGG + chr1.1:3913999-3914018 None:intergenic 50.0%
GAGTTCGAGGACTATGAGGA+AGG + chr1.1:3915231-3915250 None:intergenic 50.0%
TGTCCATCCATGCAGTAGAG+TGG - chr1.1:3914627-3914646 MS.gene24427:CDS 50.0%
TGTCGACGCAGCTATAGTCT+TGG - chr1.1:3915405-3915424 MS.gene24427:intron 50.0%
TTGCAACCAAGTGTGAGGGA+AGG + chr1.1:3914378-3914397 None:intergenic 50.0%
TTTGTCTCTCGCGTGCTTTG+TGG + chr1.1:3915186-3915205 None:intergenic 50.0%
! TCTCGCGTGCTTTGTGGTTT+TGG + chr1.1:3915180-3915199 None:intergenic 50.0%
CACAGACACAAGTGTGGTGG+TGG + chr1.1:3915254-3915273 None:intergenic 55.0%
CCAGGCACAGTATTCTCCGA+AGG - chr1.1:3913997-3914016 MS.gene24427:CDS 55.0%
CCTTCGGAGAATACTGTGCC+TGG + chr1.1:3914000-3914019 None:intergenic 55.0%
CGCATATTCCAGGAGGGACA+AGG - chr1.1:3915008-3915027 MS.gene24427:intron 55.0%
GGACACAGACACAAGTGTGG+TGG + chr1.1:3915257-3915276 None:intergenic 55.0%
GTGGGAGTTCGAGGACTATG+AGG + chr1.1:3915235-3915254 None:intergenic 55.0%
!! TGAACCTGGCTTTGCGGTGA+AGG + chr1.1:3914558-3914577 None:intergenic 55.0%
GGATTCCACCTTGTCCCTCC+TGG + chr1.1:3915019-3915038 None:intergenic 60.0%
GGGGGACACAGACACAAGTG+TGG + chr1.1:3915260-3915279 None:intergenic 60.0%
TCCACCTTCACCGCAAAGCC+AGG - chr1.1:3914551-3914570 MS.gene24427:CDS 60.0%
!! ACCTGGCTTTGCGGTGAAGG+TGG + chr1.1:3914555-3914574 None:intergenic 60.0%
!! AGTGTGGTGGTGGGAGTTCG+AGG + chr1.1:3915244-3915263 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 3913991 3915731 3913991 ID=MS.gene24427
chr1.1 mRNA 3913991 3915731 3913991 ID=MS.gene24427.t1;Parent=MS.gene24427
chr1.1 exon 3915704 3915731 3915704 ID=MS.gene24427.t1.exon1;Parent=MS.gene24427.t1
chr1.1 CDS 3915704 3915731 3915704 ID=cds.MS.gene24427.t1;Parent=MS.gene24427.t1
chr1.1 exon 3915150 3915382 3915150 ID=MS.gene24427.t1.exon2;Parent=MS.gene24427.t1
chr1.1 CDS 3915150 3915382 3915150 ID=cds.MS.gene24427.t1;Parent=MS.gene24427.t1
chr1.1 exon 3914404 3914721 3914404 ID=MS.gene24427.t1.exon3;Parent=MS.gene24427.t1
chr1.1 CDS 3914404 3914721 3914404 ID=cds.MS.gene24427.t1;Parent=MS.gene24427.t1
chr1.1 exon 3913991 3914143 3913991 ID=MS.gene24427.t1.exon4;Parent=MS.gene24427.t1
chr1.1 CDS 3913991 3914143 3913991 ID=cds.MS.gene24427.t1;Parent=MS.gene24427.t1
Gene Sequence

>MS.gene24427

ATGAACCCAGGCACAGTATTCTCCGAAGGTACAAAATGTAAGTTTACAGTGTGCTTTTTTGTTAAACTTTAATATTTGATTTGATTTGATGAATTTTGTCGTGTTTTACTTTTGGTTTAATTTAGAGAGGGAAATTCAAAAGTCAACTGCACCTCATCATTTGGTCTTGGTTCTTACAGGCAACACCTCATTTCCCACTTTGTATACTTTTCACTGTTGTTTGTTTTTTCTCATCATCATAATTTCATTCATTCATTCTCTCTATATAATCACATTCCCTATCATTTATTTCTTCATCAGACCGTGTGGAAAATTATATTAAACATAAACATAAACATAAACATGAAAGTGCATCAATTCACACGTGGATTTTGGGAGCATGAACCTTCCCTCACACTTGGTTGCAAGCGTTTACGTCCTCTTGCACCTAAAATTTCTTCTAATAACACCGATAATGTTACTTCTAACACCCCTTCTCTTTCTTTTGATCTCAAGAGCTTCATTAGACCCGAAAGTGCTCCTAGAATTAGTCTTTCTTCCTCTGATGATAACAAGAAAGATCCACCTTCACCGCAAAGCCAGGTTCATATACTAAGCTCTACTTAGTTTCATTTCCATTTTTTTTTTAATTAAGTCTGTCCATCCATGCAGTAGAGTGGTATAATTAACTCACGTGTGCGTATAATGCAATAAAAAATTAAGTATAATCAAGAACATAAATAATTCACATTAACTTCATGTAACATATAGGGTAATAACATATTTTTTACTATAATACTAATAAAGTATTTTGGTCCGGGAAAAATTGTTGAACCGAATTTCAGTTATCAGATGTATCTATATTTAGTGTATGATAATTCTTCAAACATAAACTTCCTCTTTTTCCATATGAGACTCGAGAGTTACTTGAAAAAAAAATATTAAACGACAAATATTTGTCTTTTAAAAACTTTTGATTTGGCAATTGTATGCTAATTATGTATCATGATCTATTATTTGTGTATGTATAGGTTGAAACGCATATTCCAGGAGGGACAAGGTGGAATCCAACACAAGAACAAATAGGAATATTGGAGATGTTATACAGAGGTGGAATGAGAACTCCAAATGCACAACAAATAGAACAAATCACAGTTCAACTTAGCAAGTACGGTAAAATTGAAGGGAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGCCTTCCTCATAGTCCTCGAACTCCCACCACCACACTTGTGTCTGTGTCCCCCACCTTTAGTACTATTACAACTTTGGACACCCCAAAAAGGGTATGTTCATATTCAAATAATATTCAACTTAAGCTATATATTGTGGTTCCGAAATGTCGTTGCAGAGACCTTAAAATCCTTTATATTGTCGACGCAGCTATAGTCTTGGACCGTAATTTATTTATTTTTTTGATTAAAAGGAAAGTAGGACCGTAATTTAAAACCATGAACAATGGTATACTAATTAAAATACTATAATCTTGTTTGTTACTAGGTTAAATTTGTATATTTAATCGAATATGTTACATTTTTTTGGACAGGTGCAAGTAATGGAAAGAGATCAAGAAGATAGTCCATTGAAGAAGAGTAGGAGTTGGCCATTTGAGTACTTGGAAGAGAAAAATTGGTCAATGTGCAAAGTAGAGGAACATAAAACTCTAGAGCTTTTCCCATTACACCCAGAAGGCAGATGA
Protein sequence

>MS.gene24427.t1

MNPGTVFSEVHQFTRGFWEHEPSLTLGCKRLRPLAPKISSNNTDNVTSNTPSLSFDLKSFIRPESAPRISLSSSDDNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPTTTLVSVSPTFSTITTLDTPKRVQVMERDQEDSPLKKSRSWPFEYLEEKNWSMCKVEEHKTLELFPLHPEGR