AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24465.t1 MTR_1g018090 90.368 353 28 4 1 351 1 349 0.0 588
MS.gene24465.t1 MTR_1g018090 90.938 320 23 4 1 318 1 316 0.0 513
MS.gene24465.t1 MTR_3g103030 49.737 380 118 14 1 367 1 320 4.51e-94 284
MS.gene24465.t1 MTR_5g005110 52.308 195 79 5 178 362 120 310 1.80e-50 172
MS.gene24465.t1 MTR_1g106460 51.579 190 69 5 188 362 143 324 6.58e-49 168
MS.gene24465.t1 MTR_1g106470 51.124 178 81 3 189 364 111 284 7.50e-47 161
MS.gene24465.t1 MTR_1g106480 55.000 120 21 2 275 364 38 154 7.41e-34 123
MS.gene24465.t1 MTR_5g079500 65.000 60 21 0 285 344 227 286 2.02e-22 96.7
MS.gene24465.t1 MTR_5g005110 44.595 148 68 5 178 315 120 263 6.26e-21 91.7
MS.gene24465.t1 MTR_4g131160 52.564 78 37 0 262 339 182 259 1.39e-19 89.7
MS.gene24465.t1 MTR_4g131160 52.564 78 37 0 262 339 185 262 1.51e-19 89.7
MS.gene24465.t1 MTR_8g093500 66.071 56 19 0 285 340 123 178 1.27e-18 85.1
MS.gene24465.t1 MTR_3g101810 62.963 54 20 0 285 338 180 233 8.93e-18 82.8
MS.gene24465.t1 MTR_1g106470 41.221 131 71 3 189 317 111 237 6.69e-17 79.7
MS.gene24465.t1 MTR_7g069590 56.364 55 24 0 283 337 33 87 9.38e-17 77.0
MS.gene24465.t1 MTR_1g080890 56.923 65 28 0 275 339 192 256 1.10e-16 80.9
MS.gene24465.t1 MTR_1g106460 39.860 143 61 5 188 314 143 276 1.29e-16 79.7
MS.gene24465.t1 MTR_4g070320 39.655 116 63 3 229 339 94 207 2.16e-14 73.9
MS.gene24465.t1 MTR_4g033295 57.576 66 27 1 275 339 117 182 3.89e-14 70.9
MS.gene24465.t1 MTR_4g033295 55.224 67 29 1 275 340 117 183 3.94e-14 70.5
MS.gene24465.t1 MTR_3g116770 38.136 118 67 3 225 339 141 255 8.92e-14 72.4
MS.gene24465.t1 MTR_3g116770 38.136 118 67 3 225 339 141 255 9.37e-14 72.4
MS.gene24465.t1 MTR_5g037250 34.307 137 70 3 223 339 40 176 4.99e-13 68.6
MS.gene24465.t1 MTR_1g019240 35.354 99 59 1 260 353 64 162 9.33e-13 68.2
MS.gene24465.t1 MTR_8g012290 52.308 65 30 1 276 339 291 355 1.71e-12 68.9
MS.gene24465.t1 MTR_8g012290 52.308 65 30 1 276 339 291 355 1.71e-12 68.9
MS.gene24465.t1 MTR_1g084980 45.455 66 36 0 274 339 460 525 1.87e-12 68.9
MS.gene24465.t1 MTR_8g065740 34.247 146 81 4 200 339 233 369 1.88e-12 68.6
MS.gene24465.t1 MTR_7g053410 53.125 64 29 1 277 339 318 381 2.11e-12 68.6
MS.gene24465.t1 MTR_7g053410 52.308 65 30 1 276 339 317 381 2.15e-12 68.6
MS.gene24465.t1 MTR_1g017350 50.769 65 31 1 276 339 260 324 2.33e-12 68.2
MS.gene24465.t1 MTR_1g017350 50.769 65 31 1 276 339 260 324 2.55e-12 68.2
MS.gene24465.t1 MTR_8g062240 49.231 65 32 1 276 339 151 215 2.56e-12 67.0
MS.gene24465.t1 MTR_1g017350 50.769 65 31 1 276 339 260 324 2.73e-12 68.2
MS.gene24465.t1 MTR_1g017350 50.769 65 31 1 276 339 260 324 2.75e-12 68.2
MS.gene24465.t1 MTR_1g052470 54.545 66 29 1 275 339 297 362 3.94e-12 67.4
MS.gene24465.t1 MTR_3g449770 36.364 99 50 3 278 368 311 404 4.38e-12 67.8
MS.gene24465.t1 MTR_1g069155 39.506 81 47 1 274 354 315 393 4.69e-12 67.4
MS.gene24465.t1 MTR_5g048860 35.211 142 76 4 214 339 288 429 5.58e-12 67.4
MS.gene24465.t1 MTR_3g498825 52.308 65 30 1 276 339 147 211 8.46e-12 65.9
MS.gene24465.t1 MTR_4g065870 53.030 66 30 1 275 339 354 419 8.59e-12 66.6
MS.gene24465.t1 MTR_8g099880 49.231 65 32 1 276 339 145 209 1.97e-11 64.7
MS.gene24465.t1 MTR_7g092540 55.556 63 27 1 277 338 244 306 2.44e-11 64.3
MS.gene24465.t1 MTR_1g116790 50.000 68 33 1 275 341 264 331 3.02e-11 64.3
MS.gene24465.t1 MTR_5g017040 42.188 64 37 0 289 352 118 181 3.48e-11 64.3
MS.gene24465.t1 MTR_7g092510 42.308 78 44 1 263 339 160 237 8.19e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24465.t1 AT2G14760 86.316 95 13 0 270 364 231 325 6.29e-54 181
MS.gene24465.t1 AT1G27740 63.514 148 45 3 219 366 119 257 7.59e-54 178
MS.gene24465.t1 AT4G33880 79.612 103 21 0 257 359 247 349 3.32e-53 180
MS.gene24465.t1 AT2G14760 47.642 212 68 5 189 364 134 338 2.59e-50 172
MS.gene24465.t1 AT5G43175 56.463 147 63 1 220 366 77 222 1.17e-46 159
MS.gene24465.t1 AT1G66470 54.255 94 38 2 252 344 174 263 5.36e-25 103
MS.gene24465.t1 AT5G37800 56.667 90 34 2 256 344 184 269 7.21e-25 103
MS.gene24465.t1 AT2G24260 56.410 78 31 1 265 339 21 98 8.65e-21 90.9
MS.gene24465.t1 AT4G30980 46.465 99 47 2 243 339 99 193 1.48e-20 91.3
MS.gene24465.t1 AT4G30980 46.465 99 47 2 243 339 147 241 2.12e-20 91.7
MS.gene24465.t1 AT2G24260 56.410 78 31 1 265 339 124 201 2.89e-20 91.3
MS.gene24465.t1 AT3G21330 62.500 56 21 0 283 338 276 331 6.64e-18 84.7
MS.gene24465.t1 AT5G58010 56.923 65 28 0 275 339 98 162 1.27e-17 82.8
MS.gene24465.t1 AT5G01305 51.515 66 29 1 273 335 31 96 9.32e-17 77.8
MS.gene24465.t1 AT4G00120 46.970 66 34 1 285 350 121 185 9.39e-16 75.5
MS.gene24465.t1 AT5G50915 51.724 87 38 4 277 360 137 222 4.46e-15 75.1
MS.gene24465.t1 AT5G50915 51.724 87 38 4 277 360 137 222 4.46e-15 75.1
MS.gene24465.t1 AT5G50915 51.724 87 38 4 277 360 137 222 4.49e-15 75.1
MS.gene24465.t1 AT5G50915 51.724 87 38 4 277 360 137 222 4.49e-15 75.1
MS.gene24465.t1 AT1G18400 53.846 65 29 1 276 339 145 209 6.82e-14 71.2
MS.gene24465.t1 AT1G18400 54.688 64 28 1 277 339 146 209 1.20e-13 70.9
MS.gene24465.t1 AT2G18300 31.875 160 92 4 184 339 103 249 1.75e-13 71.2
MS.gene24465.t1 AT2G18300 31.875 160 92 4 184 339 103 249 1.92e-13 70.9
MS.gene24465.t1 AT1G26260 36.364 132 74 3 211 339 112 236 2.02e-13 70.9
MS.gene24465.t1 AT1G26260 36.424 151 86 4 194 339 142 287 2.10e-13 71.2
MS.gene24465.t1 AT1G26260 36.424 151 86 4 194 339 142 287 2.10e-13 71.2
MS.gene24465.t1 AT1G26260 36.424 151 86 4 194 339 142 287 2.10e-13 71.2
MS.gene24465.t1 AT1G26260 36.424 151 86 4 194 339 142 287 2.10e-13 71.2
MS.gene24465.t1 AT1G35460 54.545 66 29 1 275 339 180 245 2.39e-13 69.7
MS.gene24465.t1 AT1G26260 36.424 151 86 4 194 339 120 265 2.47e-13 70.9
MS.gene24465.t1 AT2G18300 31.875 160 92 4 184 339 103 249 2.70e-13 70.9
MS.gene24465.t1 AT1G73830 40.187 107 60 2 246 351 117 220 4.49e-13 68.9
MS.gene24465.t1 AT4G09180 52.941 68 31 1 275 341 183 250 4.50e-13 68.9
MS.gene24465.t1 AT1G73830 40.187 107 60 2 246 351 117 220 4.56e-13 68.9
MS.gene24465.t1 AT1G25330 46.341 82 43 1 276 356 104 185 4.69e-13 68.2
MS.gene24465.t1 AT3G07340 34.337 166 83 5 188 339 169 322 4.87e-13 70.5
MS.gene24465.t1 AT3G07340 34.337 166 83 5 188 339 169 322 4.90e-13 70.5
MS.gene24465.t1 AT2G42280 55.385 65 28 1 275 338 278 342 2.13e-12 68.2
MS.gene24465.t1 AT1G59640 49.231 65 32 1 276 339 136 200 2.56e-12 67.0
MS.gene24465.t1 AT3G23690 37.168 113 54 2 244 339 143 255 2.71e-12 67.8
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G09530 37.864 103 58 2 252 348 307 409 2.82e-12 68.2
MS.gene24465.t1 AT1G51140 52.308 65 30 1 275 338 303 367 3.79e-12 67.4
MS.gene24465.t1 AT5G48560 52.308 65 30 1 276 339 301 365 4.10e-12 67.8
MS.gene24465.t1 AT5G48560 53.125 64 29 1 277 339 302 365 4.48e-12 67.4
MS.gene24465.t1 AT1G10120 51.562 64 30 1 277 339 207 270 5.16e-12 67.0
MS.gene24465.t1 AT1G10120 51.562 64 30 1 277 339 207 270 5.16e-12 67.0
MS.gene24465.t1 AT4G34530 50.769 65 31 1 276 339 172 236 5.66e-12 66.6
MS.gene24465.t1 AT1G59640 49.231 65 32 1 276 339 136 200 7.19e-12 66.2
MS.gene24465.t1 AT4G00050 41.463 82 43 2 262 343 96 172 1.09e-11 65.5
MS.gene24465.t1 AT2G42280 54.688 64 28 1 275 337 278 341 1.37e-11 65.5
MS.gene24465.t1 AT1G68920 50.769 65 31 1 276 339 303 367 1.51e-11 65.9
MS.gene24465.t1 AT1G68920 50.769 65 31 1 276 339 303 367 1.51e-11 65.9
MS.gene24465.t1 AT1G68920 50.769 65 31 1 276 339 303 367 1.51e-11 65.9
MS.gene24465.t1 AT1G68920 50.769 65 31 1 276 339 302 366 1.66e-11 65.9
MS.gene24465.t1 AT4G00050 41.463 82 43 2 262 343 198 274 2.17e-11 65.1
MS.gene24465.t1 AT4G00050 41.463 82 43 2 262 343 198 274 2.17e-11 65.1
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 278 341 3.75e-11 64.7
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 278 341 3.75e-11 64.7
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 278 341 3.75e-11 64.7
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 278 341 3.75e-11 64.7
MS.gene24465.t1 AT4G36540 47.692 65 33 1 276 339 141 205 3.77e-11 63.9
MS.gene24465.t1 AT4G36540 47.692 65 33 1 276 339 141 205 3.97e-11 63.9
MS.gene24465.t1 AT4G28790 39.560 91 52 2 263 353 260 347 4.06e-11 64.3
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 207 270 4.41e-11 64.3
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 207 270 4.41e-11 64.3
MS.gene24465.t1 AT2G20180 46.875 64 34 0 276 339 207 270 4.41e-11 64.3
MS.gene24465.t1 AT2G46970 32.967 91 56 1 275 360 222 312 5.22e-11 63.9
MS.gene24465.t1 AT2G46970 32.967 91 56 1 275 360 191 281 5.64e-11 63.9
MS.gene24465.t1 AT2G46970 32.967 91 56 1 275 360 200 290 5.97e-11 63.9
MS.gene24465.t1 AT4G36930 39.189 74 45 0 283 356 198 271 7.28e-11 63.5

Find 51 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATTACAATCTCATTA+AGG 0.173245 1.1:-4527960 None:intergenic
TGCTAGTGATGATCATATTT+TGG 0.194383 1.1:+4528008 MS.gene24465:CDS
GATCAAAATTCACTTCTTCT+AGG 0.206106 1.1:+4527661 MS.gene24465:CDS
GAGAAATATAGTTAGAGTTT+TGG 0.293615 1.1:-4527780 None:intergenic
TACCCTTGCATATAGACTTT+GGG 0.321694 1.1:-4528568 None:intergenic
AAGAAATCCCATTCTCCTTC+AGG 0.327986 1.1:-4527586 None:intergenic
TTCCATTACAATCTCATTAA+GGG 0.348435 1.1:-4527959 None:intergenic
TGGTTATAATACTCAAATAA+TGG 0.360333 1.1:+4528038 MS.gene24465:CDS
TATGCGCCACTTGCTTATAA+TGG 0.370461 1.1:+4529116 MS.gene24465:CDS
TATATTACCTTTGTTCCGTT+TGG 0.381341 1.1:-4528761 None:intergenic
ATCAAAATTCACTTCTTCTA+GGG 0.385839 1.1:+4527662 MS.gene24465:CDS
ATTAATAATAGAGGATCAAA+TGG 0.401696 1.1:+4528429 MS.gene24465:CDS
CCTTCAGGGAAAGTACCTAT+AGG 0.408509 1.1:-4527571 None:intergenic
GGAACTACTCTCAACTCAAA+TGG 0.413988 1.1:+4528510 MS.gene24465:CDS
TTACCCTTGCATATAGACTT+TGG 0.415798 1.1:-4528569 None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG 0.424302 1.1:+4527579 MS.gene24465:CDS
TGCTTGGTGTGAAGATCAAC+AGG 0.425932 1.1:-4528063 None:intergenic
TTATTTACTAGTACTTGATC+AGG 0.442578 1.1:-4527871 None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG 0.443724 1.1:+4528088 MS.gene24465:CDS
CTGCATTTGCAACTCATGCT+TGG 0.451532 1.1:-4528079 None:intergenic
ATCCCTTAATGAGATTGTAA+TGG 0.463322 1.1:+4527957 MS.gene24465:CDS
GAACTACTCTCAACTCAAAT+GGG 0.480885 1.1:+4528511 MS.gene24465:CDS
GCTTATAATGGACTTGACCT+TGG 0.488445 1.1:+4529128 MS.gene24465:CDS
AATGCTTCTCAAGAAAATAG+TGG 0.493032 1.1:+4528486 MS.gene24465:CDS
GTACTTTCCCTGAAGGAGAA+TGG 0.496433 1.1:+4527578 MS.gene24465:CDS
GCAGAAGAGATTAATAATAG+AGG 0.499877 1.1:+4528420 MS.gene24465:CDS
TTACAAAATCTTGTACCAAA+CGG 0.523617 1.1:+4528746 MS.gene24465:CDS
TTATAGAATATGGAACCTAT+AGG 0.524720 1.1:+4527556 None:intergenic
ACCCTTGCATATAGACTTTG+GGG 0.534775 1.1:-4528567 None:intergenic
ATCCCCAAAGTCTATATGCA+AGG 0.542852 1.1:+4528565 MS.gene24465:CDS
AGAAATCCCATTCTCCTTCA+GGG 0.544452 1.1:-4527585 None:intergenic
ATTTCAATTATATAGGGCCA+AGG 0.547971 1.1:+4528336 MS.gene24465:intron
TCAAAATTCACTTCTTCTAG+GGG 0.551527 1.1:+4527663 MS.gene24465:CDS
TGAGGTTGAGATTGAGTCCA+AGG 0.556070 1.1:-4529145 None:intergenic
GAAAGTTGCTAACAATGAAG+AGG 0.569015 1.1:+4528392 MS.gene24465:CDS
ATTACAATCTCATTAAGGGA+TGG 0.572980 1.1:-4527955 None:intergenic
TATTAGTACAATGCTTGAAG+AGG 0.575403 1.1:+4528897 MS.gene24465:CDS
GAAACTTGATGTGATAGAAG+TGG 0.575721 1.1:+4528110 MS.gene24465:CDS
TATATCTTTGAAGCTCATAG+TGG 0.590762 1.1:-4529179 None:intergenic
TCCCCAAAGTCTATATGCAA+GGG 0.597305 1.1:+4528566 MS.gene24465:CDS
GAAAATGATGCATTGAACAA+TGG 0.599441 1.1:+4527685 MS.gene24465:CDS
TCTTGTACCAAACGGAACAA+AGG 0.614171 1.1:+4528754 MS.gene24465:CDS
CCTATAGGTACTTTCCCTGA+AGG 0.620831 1.1:+4527571 MS.gene24465:CDS
AATTTCAGCAGTGCAAAATG+TGG 0.624595 1.1:-4527716 None:intergenic
CTCTAGTAGTAACATTTCTG+AGG 0.625639 1.1:+4528458 MS.gene24465:CDS
TCAAGTCCATTATAAGCAAG+TGG 0.629820 1.1:-4529122 None:intergenic
AAGGATGCATGAAAATTGCA+AGG 0.634976 1.1:+4528355 MS.gene24465:CDS
ACTTGATGTGATAGAAGTGG+AGG 0.635683 1.1:+4528113 MS.gene24465:CDS
GGGAAGACAAGAGCTAGTAG+AGG 0.635890 1.1:+4528531 MS.gene24465:CDS
GCTTCTCAAGAAAATAGTGG+AGG 0.669375 1.1:+4528489 MS.gene24465:CDS
ATAGTGGTAGAGAACTGTTG+AGG 0.720764 1.1:-4529163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTTATATTAAAAAAACA+AGG - chr1.1:4529007-4529026 None:intergenic 10.0%
!!! TTTATGATACTTTTTTTATT+TGG + chr1.1:4528678-4528697 MS.gene24465:intron 10.0%
!!! TTTTGTTTTAATATTGAAAT+TGG + chr1.1:4528794-4528813 MS.gene24465:intron 10.0%
!! ATTAATAATAGAGGATCAAA+TGG + chr1.1:4528429-4528448 MS.gene24465:CDS 20.0%
!! TGGTTATAATACTCAAATAA+TGG + chr1.1:4528038-4528057 MS.gene24465:CDS 20.0%
!!! GTCGTTATTTCAATTATATA+GGG + chr1.1:4528330-4528349 MS.gene24465:intron 20.0%
!!! TGTTTTAATATTGAAATTGG+TGG + chr1.1:4528797-4528816 MS.gene24465:intron 20.0%
!!! TTGTTAATTTTTTCTTCAAC+AGG - chr1.1:4528141-4528160 None:intergenic 20.0%
! ATAAAATTGATCACCATATC+CGG - chr1.1:4528292-4528311 None:intergenic 25.0%
! ATCAAAATTCACTTCTTCTA+GGG + chr1.1:4527662-4527681 MS.gene24465:CDS 25.0%
! TTACAAAATCTTGTACCAAA+CGG + chr1.1:4528746-4528765 MS.gene24465:CDS 25.0%
! TTATTTACTAGTACTTGATC+AGG - chr1.1:4527874-4527893 None:intergenic 25.0%
! TTCCATTACAATCTCATTAA+GGG - chr1.1:4527962-4527981 None:intergenic 25.0%
!! ATTTTGTTGCTAGTAAGATT+AGG - chr1.1:4528224-4528243 None:intergenic 25.0%
!! ATTTTTACAGACTCAAATCA+AGG + chr1.1:4528936-4528955 MS.gene24465:CDS 25.0%
!! CGTCGTTATTTCAATTATAT+AGG + chr1.1:4528329-4528348 MS.gene24465:intron 25.0%
!! GAGAAATATAGTTAGAGTTT+TGG - chr1.1:4527783-4527802 None:intergenic 25.0%
!! TATATCCAATGATTTTTGCA+TGG + chr1.1:4527906-4527925 MS.gene24465:CDS 25.0%
!! TTTTCATGTGACAAATTCAT+TGG + chr1.1:4528822-4528841 MS.gene24465:intron 25.0%
!!! GATCATATTTTGGAGAAAAA+TGG + chr1.1:4528018-4528037 MS.gene24465:CDS 25.0%
AATGCTTCTCAAGAAAATAG+TGG + chr1.1:4528486-4528505 MS.gene24465:CDS 30.0%
ACAATAGGAGACATTATACA+TGG + chr1.1:4528964-4528983 MS.gene24465:intron 30.0%
ATCCCTTAATGAGATTGTAA+TGG + chr1.1:4527957-4527976 MS.gene24465:CDS 30.0%
ATTACAATCTCATTAAGGGA+TGG - chr1.1:4527958-4527977 None:intergenic 30.0%
ATTTCAATTATATAGGGCCA+AGG + chr1.1:4528336-4528355 MS.gene24465:intron 30.0%
ATTTCATGGATGATTTATGC+AGG + chr1.1:4528870-4528889 MS.gene24465:intron 30.0%
CAAATCAAGGTATGTACAAT+AGG + chr1.1:4528949-4528968 MS.gene24465:intron 30.0%
CTTCCATTACAATCTCATTA+AGG - chr1.1:4527963-4527982 None:intergenic 30.0%
GAAAATGATGCATTGAACAA+TGG + chr1.1:4527685-4527704 MS.gene24465:CDS 30.0%
GATCAAAATTCACTTCTTCT+AGG + chr1.1:4527661-4527680 MS.gene24465:CDS 30.0%
GCAGAAGAGATTAATAATAG+AGG + chr1.1:4528420-4528439 MS.gene24465:CDS 30.0%
GTGCAAGAGAATTAATTTCA+TGG + chr1.1:4528856-4528875 MS.gene24465:intron 30.0%
TATATTACCTTTGTTCCGTT+TGG - chr1.1:4528764-4528783 None:intergenic 30.0%
TATTAGTACAATGCTTGAAG+AGG + chr1.1:4528897-4528916 MS.gene24465:CDS 30.0%
TCAAAATTCACTTCTTCTAG+GGG + chr1.1:4527663-4527682 MS.gene24465:CDS 30.0%
! TGCTAGTGATGATCATATTT+TGG + chr1.1:4528008-4528027 MS.gene24465:CDS 30.0%
AAGGATGCATGAAAATTGCA+AGG + chr1.1:4528355-4528374 MS.gene24465:CDS 35.0%
AATTTCAGCAGTGCAAAATG+TGG - chr1.1:4527719-4527738 None:intergenic 35.0%
CGGAACAAAGGTAATATAGT+TGG + chr1.1:4528766-4528785 MS.gene24465:intron 35.0%
CTAAAAAGCGGAATTAGAGA+CGG - chr1.1:4528258-4528277 None:intergenic 35.0%
CTCATCCATGCAAAAATCAT+TGG - chr1.1:4527914-4527933 None:intergenic 35.0%
CTCTAGTAGTAACATTTCTG+AGG + chr1.1:4528458-4528477 MS.gene24465:CDS 35.0%
GAAACTTGATGTGATAGAAG+TGG + chr1.1:4528110-4528129 MS.gene24465:CDS 35.0%
GAAAGTTGCTAACAATGAAG+AGG + chr1.1:4528392-4528411 MS.gene24465:CDS 35.0%
GAACTACTCTCAACTCAAAT+GGG + chr1.1:4528511-4528530 MS.gene24465:CDS 35.0%
GCATCTCTAACACTAAAAAG+CGG - chr1.1:4528270-4528289 None:intergenic 35.0%
TACCCTTGCATATAGACTTT+GGG - chr1.1:4528571-4528590 None:intergenic 35.0%
TCAAGTCCATTATAAGCAAG+TGG - chr1.1:4529125-4529144 None:intergenic 35.0%
TTACCCTTGCATATAGACTT+TGG - chr1.1:4528572-4528591 None:intergenic 35.0%
! ACATTTTGCACTGCTGAAAT+TGG + chr1.1:4527718-4527737 MS.gene24465:CDS 35.0%
! TTGCAATTTTCATGCATCCT+TGG - chr1.1:4528356-4528375 None:intergenic 35.0%
!! CTTTTTAGTGTTAGAGATGC+CGG + chr1.1:4528270-4528289 MS.gene24465:intron 35.0%
!! TTTTGAGCTCTGATGATATG+TGG + chr1.1:4529090-4529109 MS.gene24465:CDS 35.0%
!!! CTTACATCTTTTGAAATGCG+AGG - chr1.1:4528189-4528208 None:intergenic 35.0%
!!! GAAATGCGAGGTTTTTTCTT+CGG - chr1.1:4528177-4528196 None:intergenic 35.0%
AAGAAATCCCATTCTCCTTC+AGG - chr1.1:4527589-4527608 None:intergenic 40.0%
ACCCTTGCATATAGACTTTG+GGG - chr1.1:4528570-4528589 None:intergenic 40.0%
ACTTGATGTGATAGAAGTGG+AGG + chr1.1:4528113-4528132 MS.gene24465:CDS 40.0%
AGAAATCCCATTCTCCTTCA+GGG - chr1.1:4527588-4527607 None:intergenic 40.0%
AGTTGCAAATGCAGCTCAAA+AGG + chr1.1:4528088-4528107 MS.gene24465:CDS 40.0%
ATAGTGGTAGAGAACTGTTG+AGG - chr1.1:4529166-4529185 None:intergenic 40.0%
ATCCCCAAAGTCTATATGCA+AGG + chr1.1:4528565-4528584 MS.gene24465:CDS 40.0%
GCTTCTCAAGAAAATAGTGG+AGG + chr1.1:4528489-4528508 MS.gene24465:CDS 40.0%
GGAACTACTCTCAACTCAAA+TGG + chr1.1:4528510-4528529 MS.gene24465:CDS 40.0%
TACTTTCCCTGAAGGAGAAT+GGG + chr1.1:4527579-4527598 MS.gene24465:CDS 40.0%
TATGCGCCACTTGCTTATAA+TGG + chr1.1:4529116-4529135 MS.gene24465:CDS 40.0%
TCCCCAAAGTCTATATGCAA+GGG + chr1.1:4528566-4528585 MS.gene24465:CDS 40.0%
TCTTGTACCAAACGGAACAA+AGG + chr1.1:4528754-4528773 MS.gene24465:CDS 40.0%
!! GCTTATAATGGACTTGACCT+TGG + chr1.1:4529128-4529147 MS.gene24465:CDS 40.0%
AGTGTTAGAGATGCCGGATA+TGG + chr1.1:4528276-4528295 MS.gene24465:intron 45.0%
CCTATAGGTACTTTCCCTGA+AGG + chr1.1:4527571-4527590 MS.gene24465:CDS 45.0%
CTGCATTTGCAACTCATGCT+TGG - chr1.1:4528082-4528101 None:intergenic 45.0%
GTACTTTCCCTGAAGGAGAA+TGG + chr1.1:4527578-4527597 MS.gene24465:CDS 45.0%
TGAGGTTGAGATTGAGTCCA+AGG - chr1.1:4529148-4529167 None:intergenic 45.0%
!! CCTTCAGGGAAAGTACCTAT+AGG - chr1.1:4527574-4527593 None:intergenic 45.0%
!! TGCTTGGTGTGAAGATCAAC+AGG - chr1.1:4528066-4528085 None:intergenic 45.0%
GGGAAGACAAGAGCTAGTAG+AGG + chr1.1:4528531-4528550 MS.gene24465:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 4527565 4529187 4527565 ID=MS.gene24465
chr1.1 mRNA 4527565 4529187 4527565 ID=MS.gene24465.t1;Parent=MS.gene24465
chr1.1 exon 4527565 4528203 4527565 ID=MS.gene24465.t1.exon1;Parent=MS.gene24465.t1
chr1.1 CDS 4527565 4528203 4527565 ID=cds.MS.gene24465.t1;Parent=MS.gene24465.t1
chr1.1 exon 4528351 4528587 4528351 ID=MS.gene24465.t1.exon2;Parent=MS.gene24465.t1
chr1.1 CDS 4528351 4528587 4528351 ID=cds.MS.gene24465.t1;Parent=MS.gene24465.t1
chr1.1 exon 4528710 4528775 4528710 ID=MS.gene24465.t1.exon3;Parent=MS.gene24465.t1
chr1.1 CDS 4528710 4528775 4528710 ID=cds.MS.gene24465.t1;Parent=MS.gene24465.t1
chr1.1 exon 4528892 4528957 4528892 ID=MS.gene24465.t1.exon4;Parent=MS.gene24465.t1
chr1.1 CDS 4528892 4528957 4528892 ID=cds.MS.gene24465.t1;Parent=MS.gene24465.t1
chr1.1 exon 4529089 4529187 4529089 ID=MS.gene24465.t1.exon5;Parent=MS.gene24465.t1
chr1.1 CDS 4529089 4529187 4529089 ID=cds.MS.gene24465.t1;Parent=MS.gene24465.t1
Gene Sequence

>MS.gene24465

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTATTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGCATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCTAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGTAAGTTTTATTTTGTACCTAATCTTACTAGCAACAAAATTAACATGAATTCCGTCTCTAATTCCGCTTTTTAGTGTTAGAGATGCCGGATATGGTGATCAATTTTATTTTTTGTCTCTAATTTTCGTCGTTATTTCAATTATATAGGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTGCAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGGTAACTAATCAATTACTTCAACTCAAACAAAAAAACTAGCTTGATTTATTTATATATTTTCATATCAAAACAAAAATTAGTTTATGCATATTTATGATACTTTTTTTATTTGGATTTTGCAGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCAAACGGAACAAAGGTAATATAGTTGGTCTATTTTTGTTTTAATATTGAAATTGGTGGCATTTTCATGTGACAAATTCATTGGTGTAATTAATTGTGCAAGAGAATTAATTTCATGGATGATTTATGCAGGTTGATATTAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGGTATGTACAATAGGAGACATTATACATGGATGCATAAAATTTAAATCCTTGTTTTTTTAATATAAGATATATACATAAAAGACAAGTACTAATAATTATTGTTTTATTGTTTTTTTTTTTTTTTTATGTAGCTTTTGAGCTCTGATGATATGTGGATGTATGCGCCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA
Protein sequence

>MS.gene24465.t1

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDALNNGTQSTFCTAEIGENERMFSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEIAEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL