AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24510.t1 MTR_1g017350 98.361 427 6 1 1 427 1 426 0.0 858
MS.gene24510.t1 MTR_1g017350 97.658 427 6 2 1 427 1 423 0.0 847
MS.gene24510.t1 MTR_1g017350 98.104 422 7 1 1 422 1 421 0.0 847
MS.gene24510.t1 MTR_1g017350 97.393 422 7 2 1 422 1 418 0.0 836
MS.gene24510.t1 MTR_5g048860 54.726 201 63 5 195 391 299 475 3.25e-56 194
MS.gene24510.t1 MTR_8g065740 41.768 328 136 10 93 391 114 415 1.29e-55 191
MS.gene24510.t1 MTR_7g053410 39.752 322 152 8 75 355 91 411 2.26e-51 181
MS.gene24510.t1 MTR_7g053410 39.752 322 152 8 75 355 91 411 3.24e-51 181
MS.gene24510.t1 MTR_3g116770 48.558 208 76 4 233 409 163 370 1.02e-50 176
MS.gene24510.t1 MTR_3g116770 46.890 209 79 4 233 409 163 371 2.22e-50 175
MS.gene24510.t1 MTR_8g012290 38.701 354 160 15 88 391 81 427 1.28e-48 173
MS.gene24510.t1 MTR_8g012290 38.701 354 160 15 88 391 81 427 1.46e-48 173
MS.gene24510.t1 MTR_4g070320 70.093 107 30 1 244 348 124 230 4.10e-44 157
MS.gene24510.t1 MTR_8g062240 47.475 198 96 4 171 360 53 250 3.25e-43 153
MS.gene24510.t1 MTR_3g498825 66.981 106 32 1 243 345 129 234 2.32e-40 147
MS.gene24510.t1 MTR_8g099880 73.626 91 21 1 258 345 142 232 8.33e-40 145
MS.gene24510.t1 MTR_7g092510 68.041 97 31 0 250 346 162 258 1.62e-39 145
MS.gene24510.t1 MTR_5g037250 60.484 124 44 2 209 332 65 183 1.56e-38 139
MS.gene24510.t1 MTR_1g059270 61.165 103 40 0 250 352 149 251 1.86e-38 139
MS.gene24510.t1 MTR_1g059270 63.918 97 35 0 250 346 149 245 3.82e-37 138
MS.gene24510.t1 MTR_6g084120 52.000 100 38 2 241 340 136 225 4.44e-24 100
MS.gene24510.t1 MTR_4g131160 60.241 83 32 1 244 326 179 260 2.64e-22 98.6
MS.gene24510.t1 MTR_4g131160 60.241 83 32 1 244 326 182 263 3.02e-22 98.2
MS.gene24510.t1 MTR_1g080890 67.164 67 21 1 260 326 192 257 7.96e-21 93.6
MS.gene24510.t1 MTR_4g033295 58.462 65 27 0 261 325 118 182 1.93e-16 77.8
MS.gene24510.t1 MTR_2g098310 47.126 87 38 1 247 325 310 396 2.52e-16 80.9
MS.gene24510.t1 MTR_4g033295 56.716 67 28 1 261 326 118 184 2.86e-16 77.0
MS.gene24510.t1 MTR_1g052470 52.055 73 35 0 259 331 296 368 5.67e-16 79.7
MS.gene24510.t1 MTR_7g092540 52.113 71 34 0 261 331 243 313 7.74e-16 78.6
MS.gene24510.t1 MTR_2g098310 47.674 86 37 1 247 324 310 395 7.83e-16 79.3
MS.gene24510.t1 MTR_4g065870 56.716 67 29 0 259 325 353 419 7.97e-16 79.3
MS.gene24510.t1 MTR_1g084980 47.945 73 37 1 263 335 464 535 1.45e-15 79.3
MS.gene24510.t1 MTR_7g092540 54.688 64 29 0 261 324 243 306 3.98e-15 76.3
MS.gene24510.t1 MTR_1g070870 51.579 95 45 1 232 326 91 184 4.59e-15 75.5
MS.gene24510.t1 MTR_4g065870 58.065 62 26 0 261 322 355 416 4.62e-15 77.0
MS.gene24510.t1 MTR_1g069155 52.174 69 32 1 263 331 319 386 6.31e-15 77.0
MS.gene24510.t1 MTR_1g070870 65.672 67 22 1 260 326 122 187 1.94e-14 73.9
MS.gene24510.t1 MTR_7g099540 40.952 105 58 2 230 331 218 321 2.80e-14 74.7
MS.gene24510.t1 MTR_3g449770 41.284 109 59 3 222 326 266 373 9.20e-14 73.6
MS.gene24510.t1 MTR_3g028520 47.761 67 35 0 259 325 320 386 7.92e-13 70.1
MS.gene24510.t1 MTR_3g027650 47.761 67 35 0 259 325 320 386 7.92e-13 70.1
MS.gene24510.t1 MTR_7g099540 40.000 100 56 2 230 326 218 316 1.02e-12 70.1
MS.gene24510.t1 MTR_7g110810 48.387 62 31 1 272 333 213 273 3.22e-12 68.2
MS.gene24510.t1 MTR_1g018090 50.769 65 31 1 261 325 274 337 4.23e-12 67.8
MS.gene24510.t1 MTR_3g027650 50.000 62 31 0 261 322 322 383 4.57e-12 67.8
MS.gene24510.t1 MTR_1g019240 46.154 65 34 1 263 327 87 150 7.08e-12 65.9
MS.gene24510.t1 MTR_8g036235 39.506 81 41 1 253 325 300 380 7.52e-12 67.0
MS.gene24510.t1 MTR_7g111320 53.125 64 29 1 263 326 434 496 1.67e-11 66.6
MS.gene24510.t1 MTR_3g103030 51.562 64 30 1 262 325 230 292 2.90e-11 64.7
MS.gene24510.t1 MTR_2g098310 33.884 121 37 2 247 324 310 430 9.92e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24510.t1 AT1G10120 42.438 443 162 20 1 427 1 366 1.03e-76 243
MS.gene24510.t1 AT1G10120 42.438 443 162 20 1 427 1 366 1.03e-76 243
MS.gene24510.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.49e-55 190
MS.gene24510.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.49e-55 190
MS.gene24510.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.49e-55 190
MS.gene24510.t1 AT1G68920 63.871 155 30 3 238 392 285 413 5.49e-55 190
MS.gene24510.t1 AT1G26260 69.231 130 34 2 226 350 133 261 1.05e-51 177
MS.gene24510.t1 AT1G26260 64.583 144 45 2 212 350 148 290 1.99e-51 177
MS.gene24510.t1 AT1G26260 64.583 144 45 2 212 350 170 312 3.25e-51 177
MS.gene24510.t1 AT1G26260 64.583 144 45 2 212 350 170 312 3.25e-51 177
MS.gene24510.t1 AT1G26260 64.583 144 45 2 212 350 170 312 3.25e-51 177
MS.gene24510.t1 AT1G26260 64.583 144 45 2 212 350 170 312 3.25e-51 177
MS.gene24510.t1 AT3G07340 64.964 137 42 3 218 350 213 347 2.29e-48 171
MS.gene24510.t1 AT3G07340 64.964 137 42 3 218 350 213 347 3.73e-48 171
MS.gene24510.t1 AT3G23690 54.598 174 65 5 245 408 176 345 2.52e-46 164
MS.gene24510.t1 AT4G34530 70.408 98 29 0 250 347 161 258 3.44e-43 154
MS.gene24510.t1 AT5G48560 77.419 93 20 1 257 348 297 389 6.67e-43 157
MS.gene24510.t1 AT5G48560 77.419 93 20 1 257 348 297 389 1.16e-42 157
MS.gene24510.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.30e-42 151
MS.gene24510.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.30e-42 151
MS.gene24510.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.67e-42 151
MS.gene24510.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.67e-42 151
MS.gene24510.t1 AT4G36540 54.225 142 59 3 205 345 89 225 2.09e-40 146
MS.gene24510.t1 AT4G36540 54.225 142 59 3 205 345 89 225 2.31e-40 146
MS.gene24510.t1 AT1G59640 49.057 159 74 2 191 349 73 224 2.63e-40 145
MS.gene24510.t1 AT1G59640 48.734 158 74 2 191 348 73 223 4.45e-40 146
MS.gene24510.t1 AT2G18300 54.610 141 46 2 218 340 124 264 7.21e-40 145
MS.gene24510.t1 AT2G18300 54.610 141 46 2 218 340 124 264 7.46e-40 145
MS.gene24510.t1 AT2G18300 54.610 141 46 2 218 340 124 264 1.37e-39 145
MS.gene24510.t1 AT3G57800 37.066 259 124 5 126 346 32 289 5.75e-39 144
MS.gene24510.t1 AT2G42300 62.500 96 36 0 252 347 176 271 1.43e-37 138
MS.gene24510.t1 AT2G42300 63.158 95 35 0 252 346 176 270 1.28e-36 137
MS.gene24510.t1 AT5G62610 49.057 159 68 4 186 332 67 224 4.03e-35 131
MS.gene24510.t1 AT5G62610 49.057 159 68 4 186 332 67 224 4.03e-35 131
MS.gene24510.t1 AT1G18400 70.732 82 24 0 259 340 143 224 6.65e-33 124
MS.gene24510.t1 AT1G18400 70.732 82 24 0 259 340 143 224 9.78e-33 124
MS.gene24510.t1 AT1G73830 69.136 81 25 0 260 340 146 226 8.40e-32 122
MS.gene24510.t1 AT1G73830 69.136 81 25 0 260 340 146 226 8.68e-32 122
MS.gene24510.t1 AT1G25330 50.806 124 50 1 257 369 100 223 2.26e-31 120
MS.gene24510.t1 AT3G57800 31.373 306 124 6 126 346 32 336 2.01e-30 122
MS.gene24510.t1 AT2G24260 69.697 66 19 1 261 326 35 99 3.05e-22 95.5
MS.gene24510.t1 AT5G58010 62.963 81 25 2 260 336 98 177 3.85e-22 96.3
MS.gene24510.t1 AT4G30980 71.212 66 18 1 261 326 130 194 6.65e-22 95.9
MS.gene24510.t1 AT4G30980 71.212 66 18 1 261 326 178 242 1.12e-21 96.3
MS.gene24510.t1 AT2G24260 69.697 66 19 1 261 326 138 202 1.42e-21 95.9
MS.gene24510.t1 AT2G42300 68.000 50 16 0 252 301 176 225 4.05e-17 80.5
MS.gene24510.t1 AT2G42300 68.000 50 16 0 252 301 176 225 4.05e-17 80.5
MS.gene24510.t1 AT2G42300 69.388 49 15 0 252 300 176 224 4.51e-17 80.5
MS.gene24510.t1 AT4G09180 42.056 107 49 3 241 334 153 259 1.47e-15 76.6
MS.gene24510.t1 AT1G35460 53.731 67 31 0 259 325 179 245 1.88e-15 76.3
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 178 271 2.14e-15 78.2
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 178 271 2.14e-15 78.2
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 178 271 2.14e-15 78.2
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.95e-15 77.8
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.95e-15 77.8
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.95e-15 77.8
MS.gene24510.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.95e-15 77.8
MS.gene24510.t1 AT2G42280 54.688 64 29 0 261 324 279 342 3.58e-15 77.0
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.22e-15 77.4
MS.gene24510.t1 AT2G42280 56.061 66 27 1 261 324 279 344 6.44e-15 76.3
MS.gene24510.t1 AT1G51140 56.250 64 28 0 261 324 304 367 7.79e-15 76.3
MS.gene24510.t1 AT4G28790 35.156 128 64 3 211 333 229 342 1.96e-14 75.1
MS.gene24510.t1 AT2G20180 40.217 92 54 1 232 323 249 339 5.55e-14 73.2
MS.gene24510.t1 AT4G02590 64.179 67 23 1 260 326 82 147 7.40e-14 71.6
MS.gene24510.t1 AT4G02590 64.179 67 23 1 260 326 145 210 1.01e-13 72.0
MS.gene24510.t1 AT4G02590 64.179 67 23 1 260 326 145 210 1.01e-13 72.0
MS.gene24510.t1 AT4G28815 55.172 58 25 1 264 321 71 127 1.14e-13 70.5
MS.gene24510.t1 AT4G28800 35.338 133 68 6 264 389 252 373 1.17e-13 72.8
MS.gene24510.t1 AT1G03040 65.152 66 22 1 261 326 139 203 1.42e-13 71.6
MS.gene24510.t1 AT1G03040 65.152 66 22 1 261 326 144 208 1.76e-13 71.2
MS.gene24510.t1 AT1G03040 64.179 67 23 1 260 326 143 208 2.83e-13 70.9
MS.gene24510.t1 AT4G28815 55.172 58 25 1 264 321 147 203 3.67e-13 70.5
MS.gene24510.t1 AT4G28790 35.897 117 56 3 211 322 229 331 5.31e-13 70.1
MS.gene24510.t1 AT4G28800 52.542 59 27 1 264 322 264 321 3.49e-12 68.6
MS.gene24510.t1 AT4G00050 49.231 65 32 1 261 325 105 168 7.65e-12 66.2
MS.gene24510.t1 AT2G46970 41.250 80 41 2 259 333 216 294 1.26e-11 66.6
MS.gene24510.t1 AT2G46970 41.250 80 41 2 259 333 185 263 1.42e-11 66.2
MS.gene24510.t1 AT4G00050 49.231 65 32 1 261 325 207 270 1.48e-11 66.2
MS.gene24510.t1 AT2G46970 41.250 80 41 2 259 333 194 272 1.50e-11 66.2
MS.gene24510.t1 AT4G00050 49.231 65 32 1 261 325 207 270 1.69e-11 65.9
MS.gene24510.t1 AT4G33880 49.231 65 32 1 261 325 266 329 1.78e-11 65.9
MS.gene24510.t1 AT2G43140 48.485 66 34 0 259 324 229 294 2.04e-11 65.1
MS.gene24510.t1 AT2G43140 48.485 66 34 0 259 324 132 197 3.97e-11 62.8

Find 111 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATACAACACTTGACAATT+TGG 0.149023 1.1:+5173667 MS.gene24510:CDS
TTCCCTGATTGTTCAACTTT+TGG 0.193603 1.1:-5172205 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1.1:+5171376 MS.gene24510:CDS
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1.1:+5171308 MS.gene24510:CDS
ATCCCATTCCATAAAAGTTT+TGG 0.257326 1.1:-5173637 None:intergenic
TATTAGTTCTGTGTCAAATA+TGG 0.262900 1.1:+5171196 MS.gene24510:CDS
AAGATCTTCACTTACATCTT+TGG 0.264618 1.1:-5173075 None:intergenic
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1.1:+5172656 MS.gene24510:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1.1:+5171494 MS.gene24510:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1.1:-5171737 None:intergenic
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1.1:+5171605 MS.gene24510:CDS
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1.1:+5172473 MS.gene24510:CDS
CTTGTTCAATACTCAAATCT+TGG 0.340230 1.1:+5171428 MS.gene24510:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.345728 1.1:+5171253 MS.gene24510:CDS
CAAATTGTCAAGTGTTGTAT+TGG 0.347363 1.1:-5173666 None:intergenic
CACCATTAATTTGACCCCTT+TGG 0.347434 1.1:-5171607 None:intergenic
ATTCCCAAACGCAAGTTTCC+AGG 0.357553 1.1:+5173453 MS.gene24510:CDS
CTCCAGTCACGCTTAGGACT+TGG 0.365208 1.1:+5173391 MS.gene24510:CDS
AATACAACACTTGACAATTT+GGG 0.372449 1.1:+5173668 MS.gene24510:CDS
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1.1:+5171509 MS.gene24510:CDS
AAACCAAAAGTTGAACAATC+AGG 0.388796 1.1:+5172202 MS.gene24510:CDS
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1.1:+5171267 MS.gene24510:CDS
CTACATCAAAGTTCAGTTCC+GGG 0.392601 1.1:-5173040 None:intergenic
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1.1:+5171172 MS.gene24510:CDS
AAATTGTCAAGTGTTGTATT+GGG 0.393591 1.1:-5173665 None:intergenic
TCTACATCAAAGTTCAGTTC+CGG 0.395058 1.1:-5173041 None:intergenic
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1.1:+5171268 MS.gene24510:CDS
TACCCTGGAAACTTGCGTTT+GGG 0.399150 1.1:-5173456 None:intergenic
GGAATCGGTGGATTTGTTCC+TGG 0.401252 1.1:+5173412 MS.gene24510:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1.1:+5171481 MS.gene24510:CDS
TATGTACATGCAGAATGCTT+TGG 0.415983 1.1:+5173604 MS.gene24510:intron
TTATAATGCTGTGATGGAAT+TGG 0.423796 1.1:-5171563 None:intergenic
TGCAAGACTGTGGCTGTTGG+TGG 0.430341 1.1:-5172305 None:intergenic
TTACCCTGGAAACTTGCGTT+TGG 0.431578 1.1:-5173457 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1.1:+5171512 MS.gene24510:CDS
TTCCAAGTCCTAAGCGTGAC+TGG 0.444135 1.1:-5173393 None:intergenic
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1.1:-5172491 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1.1:+5171503 MS.gene24510:CDS
CAGCCACAGTCTTGCAGAAA+GGG 0.452630 1.1:+5172312 MS.gene24510:CDS
GAACCATCAGAAATCTTCCT+TGG 0.455036 1.1:-5172163 None:intergenic
GAACATGTAGCTAACACATC+AGG 0.456379 1.1:+5171536 MS.gene24510:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1.1:+5171671 MS.gene24510:CDS
TTCTGCAAGACTGTGGCTGT+TGG 0.459429 1.1:-5172308 None:intergenic
ATTCATGAGGATGGAGGTAC+AGG 0.461324 1.1:+5171653 MS.gene24510:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1.1:-5171179 None:intergenic
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1.1:+5171458 MS.gene24510:CDS
TGTGCAATCACTGCAGCAAC+AGG 0.471611 1.1:+5172712 MS.gene24510:CDS
TATTCAACACACTATAACTC+TGG 0.473092 1.1:-5174079 None:intergenic
AAAGTTCAGTTCCGGGTTCA+CGG 0.473106 1.1:-5173033 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1.1:+5173385 MS.gene24510:intron
TGGAAACTTGCGTTTGGGAA+TGG 0.479393 1.1:-5173451 None:intergenic
CGCTTAGGACTTGGAATCGG+TGG 0.488486 1.1:+5173400 MS.gene24510:CDS
ACAGTTCCCTCCTTTGCCTC+AGG 0.492804 1.1:+5173507 MS.gene24510:CDS
ATCACTGCAGCAACAGGTTG+AGG 0.493756 1.1:+5172718 MS.gene24510:CDS
CGCAAGTTTCCAGGGTAACA+TGG 0.498356 1.1:+5173462 MS.gene24510:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1.1:+5171581 MS.gene24510:CDS
GAAACTTGCCACCGTGAACC+CGG 0.509079 1.1:+5173022 MS.gene24510:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1.1:+5171592 MS.gene24510:CDS
GTTCAATACTCAAATCTTGG+AGG 0.510892 1.1:+5171431 MS.gene24510:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1.1:+5171464 MS.gene24510:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1.1:-5171474 None:intergenic
TTTCTTCTACTTCCACTACC+AGG 0.520640 1.1:-5171683 None:intergenic
AAAAGATTAGTGAACGAATG+AGG 0.527173 1.1:+5172450 MS.gene24510:CDS
GGATGAGAGGAGCTTATACC+AGG 0.529199 1.1:-5173430 None:intergenic
ACAGCCACAGTCTTGCAGAA+AGG 0.531570 1.1:+5172311 MS.gene24510:CDS
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1.1:+5171485 MS.gene24510:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1.1:+5171504 MS.gene24510:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542730 1.1:+5172127 MS.gene24510:intron
AGTTTCCAGGGTAACATGGC+TGG 0.548496 1.1:+5173466 MS.gene24510:CDS
TTCTACTTTCAGTCCAAACA+AGG 0.550639 1.1:+5171724 MS.gene24510:CDS
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1.1:+5171513 MS.gene24510:CDS
AACCAAAAGTTGAACAATCA+GGG 0.556875 1.1:+5172203 MS.gene24510:CDS
TCTCCAAGGAAGATTTCTGA+TGG 0.568713 1.1:+5172160 MS.gene24510:CDS
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1.1:-5171510 None:intergenic
TTCCCAAACGCAAGTTTCCA+GGG 0.570083 1.1:+5173454 MS.gene24510:CDS
TGGTGAACAATCTCAGATTG+AGG 0.578059 1.1:+5171625 MS.gene24510:CDS
GGGAACTGTGTTGATGAACT+AGG 0.579147 1.1:-5173493 None:intergenic
TCACGCTTAGGACTTGGAAT+CGG 0.580584 1.1:+5173397 MS.gene24510:CDS
GCATGCCAGCCATGTTACCC+TGG 0.580745 1.1:-5173471 None:intergenic
AACTGAACTTTGATGTAGAA+CGG 0.586015 1.1:+5173045 MS.gene24510:CDS
CTTGACAATTTGGGACCCAA+TGG 0.588420 1.1:+5173677 MS.gene24510:CDS
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1.1:+5171591 MS.gene24510:CDS
ATGTGATTATAATGCTGTGA+TGG 0.590061 1.1:-5171569 None:intergenic
GAGGACTCTATTCATGAGGA+TGG 0.590188 1.1:+5171644 MS.gene24510:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1.1:-5171386 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1.1:-5171470 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1.1:-5171296 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1.1:-5171460 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1.1:+5171118 MS.gene24510:CDS
TCTTTAGAAGCATCTCCACT+CGG 0.607421 1.1:-5172247 None:intergenic
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1.1:+5171514 MS.gene24510:CDS
TGCGTTTGGGAATGGATGAG+AGG 0.610999 1.1:-5173443 None:intergenic
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1.1:-5171385 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612365 1.1:+5171574 MS.gene24510:CDS
GTTCCCCACCTGACCCATGT+TGG 0.625912 1.1:-5171517 None:intergenic
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1.1:+5171106 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1.1:+5171537 MS.gene24510:CDS
GAACTTGGATTAGAATGCTG+AGG 0.632192 1.1:+5172120 MS.gene24510:intron
GGAGGTACAGGATCTGCACC+TGG 0.632655 1.1:+5171665 MS.gene24510:CDS
GTACCCTTTCTGCAAGACTG+TGG 0.636291 1.1:-5172315 None:intergenic
AACTTGGATTAGAATGCTGA+GGG 0.637008 1.1:+5172121 MS.gene24510:intron
ATGGAGTGAAAGATTCTCCA+AGG 0.638409 1.1:+5172146 MS.gene24510:CDS
GATTGAGGACTCTATTCATG+AGG 0.640742 1.1:+5171640 MS.gene24510:CDS
AATGCAATGGAGTTTCAACA+TGG 0.644756 1.1:+5171131 MS.gene24510:CDS
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1.1:+5172277 MS.gene24510:CDS
GACTCTATTCATGAGGATGG+AGG 0.659616 1.1:+5171647 MS.gene24510:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1.1:+5171101 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1.1:+5172484 MS.gene24510:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1.1:+5171593 MS.gene24510:CDS
GCTAAAGATAACTCTCCGAG+TGG 0.729396 1.1:+5172232 MS.gene24510:CDS
GTTCAGTTCCGGGTTCACGG+TGG 0.752023 1.1:-5173030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATAATCTCAATTG+TGG + chr1.1:5173147-5173166 MS.gene24510:intron 20.0%
!! AACAATGAAAAAAGAGTAAA+TGG - chr1.1:5174001-5174020 None:intergenic 20.0%
!! ACTAACAAAAAATACATTCA+AGG + chr1.1:5173875-5173894 MS.gene24510:intron 20.0%
!! CTTTGTATACATTAGAAAAA+TGG - chr1.1:5172390-5172409 None:intergenic 20.0%
!! GAATATATCAAACTACAAAA+AGG + chr1.1:5173787-5173806 MS.gene24510:intron 20.0%
!! TATATCAATGAATCTCATAT+AGG + chr1.1:5172027-5172046 MS.gene24510:intron 20.0%
!! TGAAATATCTTATATATGCT+TGG + chr1.1:5171964-5171983 MS.gene24510:intron 20.0%
!!! TTAGTTGTTAATTTGTTAGA+GGG + chr1.1:5171820-5171839 MS.gene24510:intron 20.0%
! AAGTGAAGATCTTAATCATA+CGG + chr1.1:5173085-5173104 MS.gene24510:intron 25.0%
! AATACAACACTTGACAATTT+GGG + chr1.1:5173668-5173687 MS.gene24510:CDS 25.0%
! AATTTATTTCCATGTTGAAC+AGG + chr1.1:5174046-5174065 MS.gene24510:intron 25.0%
! ACAAACATTACAGTATAAGA+TGG - chr1.1:5172357-5172376 None:intergenic 25.0%
! ATTTATTTCCATGTTGAACA+GGG + chr1.1:5174047-5174066 MS.gene24510:intron 25.0%
! GTTAAGATGATTGTGTTAAA+TGG + chr1.1:5172517-5172536 MS.gene24510:intron 25.0%
! TAATCCAAGTTCATAATACA+AGG - chr1.1:5172112-5172131 None:intergenic 25.0%
! TTCTTCTCTTATTAGATAAC+TGG + chr1.1:5172656-5172675 MS.gene24510:intron 25.0%
!! AAATTGTCAAGTGTTGTATT+GGG - chr1.1:5173668-5173687 None:intergenic 25.0%
!! ATCTTTTGCTAGTTATTAAG+CGG + chr1.1:5173821-5173840 MS.gene24510:intron 25.0%
!! ATTTTTATCCTTGAATGTGT+TGG - chr1.1:5173976-5173995 None:intergenic 25.0%
!! GCTTCAATTCCATTATATTT+TGG + chr1.1:5172949-5172968 MS.gene24510:intron 25.0%
!! TGTATACTTTAAAGATTGCA+AGG - chr1.1:5172757-5172776 None:intergenic 25.0%
!! TTCCAAAACTTTTATGGAAT+GGG + chr1.1:5173635-5173654 MS.gene24510:CDS 25.0%
!!! GTTAGTTGTTAATTTGTTAG+AGG + chr1.1:5171819-5171838 MS.gene24510:intron 25.0%
!!! GTTTAATTGTATTGTTTCTG+AGG + chr1.1:5172059-5172078 MS.gene24510:intron 25.0%
!!! TATTAGTTCTGTGTCAAATA+TGG + chr1.1:5171196-5171215 MS.gene24510:CDS 25.0%
!!! TTTCCTTTTTTTATTTCCCT+TGG - chr1.1:5172840-5172859 None:intergenic 25.0%
AAAAGATTAGTGAACGAATG+AGG + chr1.1:5172450-5172469 MS.gene24510:CDS 30.0%
AAACCAAAAGTTGAACAATC+AGG + chr1.1:5172202-5172221 MS.gene24510:CDS 30.0%
AACATTACAGTATAAGATGG+TGG - chr1.1:5172354-5172373 None:intergenic 30.0%
AACCAAAAGTTGAACAATCA+GGG + chr1.1:5172203-5172222 MS.gene24510:CDS 30.0%
AACTGAACTTTGATGTAGAA+CGG + chr1.1:5173045-5173064 MS.gene24510:CDS 30.0%
AAGATCTTCACTTACATCTT+TGG - chr1.1:5173078-5173097 None:intergenic 30.0%
AATGCCTTGTATTATGAACT+TGG + chr1.1:5172105-5172124 MS.gene24510:intron 30.0%
ACACCAAGGGAAATAAAAAA+AGG + chr1.1:5172834-5172853 MS.gene24510:intron 30.0%
ACAGCATTATAATCACATCA+AGG + chr1.1:5171574-5171593 MS.gene24510:CDS 30.0%
ACTAGCAAAAGATACACTTA+AGG - chr1.1:5173814-5173833 None:intergenic 30.0%
ATGTGATTATAATGCTGTGA+TGG - chr1.1:5171572-5171591 None:intergenic 30.0%
CAATACAACACTTGACAATT+TGG + chr1.1:5173667-5173686 MS.gene24510:CDS 30.0%
CCAGGAAAACCAAAATATAA+TGG - chr1.1:5172961-5172980 None:intergenic 30.0%
CTTGTTCAATACTCAAATCT+TGG + chr1.1:5171428-5171447 MS.gene24510:CDS 30.0%
GATATCAATGAATCTTATGC+AGG + chr1.1:5171775-5171794 MS.gene24510:intron 30.0%
TAAGCATATCTTTAGACCAA+TGG - chr1.1:5173186-5173205 None:intergenic 30.0%
TCTTTATAAGATGAATAGCC+AGG - chr1.1:5172979-5172998 None:intergenic 30.0%
TTGATATATTCCGATACTGT+AGG - chr1.1:5173778-5173797 None:intergenic 30.0%
! ATCCCATTCCATAAAAGTTT+TGG - chr1.1:5173640-5173659 None:intergenic 30.0%
! ATCTTTACTCTTTTTACCTG+AGG - chr1.1:5173526-5173545 None:intergenic 30.0%
! CAAATTGTCAAGTGTTGTAT+TGG - chr1.1:5173669-5173688 None:intergenic 30.0%
! CATGACTTCCAAAACTTTTA+TGG + chr1.1:5173629-5173648 MS.gene24510:CDS 30.0%
! CTAATATCCATTTCTGAAGA+TGG - chr1.1:5171182-5171201 None:intergenic 30.0%
! CTTCCAAAACTTTTATGGAA+TGG + chr1.1:5173634-5173653 MS.gene24510:CDS 30.0%
! GTCGTAACTTGTAACTTATA+TGG + chr1.1:5172553-5172572 MS.gene24510:intron 30.0%
! TTATAATGCTGTGATGGAAT+TGG - chr1.1:5171566-5171585 None:intergenic 30.0%
!! ATCTTATAACCCTCTTGTTT+TGG + chr1.1:5171376-5171395 MS.gene24510:CDS 30.0%
!!! ACTTCTGTTTTTGCTTTTGT+AGG + chr1.1:5172418-5172437 MS.gene24510:intron 30.0%
!!! CATAAAAGTTTTGGAAGTCA+TGG - chr1.1:5173631-5173650 None:intergenic 30.0%
!!! CCATTATATTTTGGTTTTCC+TGG + chr1.1:5172958-5172977 MS.gene24510:intron 30.0%
!!! GTTGGTTTGTTTTGTTTATG+AGG + chr1.1:5171922-5171941 MS.gene24510:intron 30.0%
AACATGTAGCTAACACATCA+GGG + chr1.1:5171537-5171556 MS.gene24510:CDS 35.0%
AAGTGAACTATTCACTTTGG+AGG + chr1.1:5173122-5173141 MS.gene24510:intron 35.0%
AAGTGAATAGTTCACTTCCA+AGG - chr1.1:5173119-5173138 None:intergenic 35.0%
AAGTGGAAGTTTCTCAGAAA+TGG + chr1.1:5171481-5171500 MS.gene24510:CDS 35.0%
AATGCAATGGAGTTTCAACA+TGG + chr1.1:5171131-5171150 MS.gene24510:CDS 35.0%
ACTAATGAGAGACACATTTG+AGG + chr1.1:5173907-5173926 MS.gene24510:intron 35.0%
AGACAATGTTCCTACAGTAT+CGG + chr1.1:5173765-5173784 MS.gene24510:intron 35.0%
AGATTCTGCCTATTTACCAT+TGG - chr1.1:5173696-5173715 None:intergenic 35.0%
AGTGGAAGTAGAAGAAAAAG+AGG + chr1.1:5171689-5171708 MS.gene24510:CDS 35.0%
AGTTATTAAGCGGCTAATAG+AGG + chr1.1:5173831-5173850 MS.gene24510:intron 35.0%
ATCCAAAGGGGTCAAATTAA+TGG + chr1.1:5171605-5171624 MS.gene24510:CDS 35.0%
ATGACACCATGACTGATATT+CGG - chr1.1:5173232-5173251 None:intergenic 35.0%
CAAATGTGTCTCTCATTAGT+CGG - chr1.1:5173907-5173926 None:intergenic 35.0%
CCTGATTCATAGAACTTCAT+CGG + chr1.1:5171878-5171897 MS.gene24510:intron 35.0%
CTCGATAGGATTTGTATTGT+TGG + chr1.1:5171904-5171923 MS.gene24510:intron 35.0%
CTTGATTCTCCAAAACAAGA+GGG - chr1.1:5171388-5171407 None:intergenic 35.0%
GATTCTGCCTATTTACCATT+GGG - chr1.1:5173695-5173714 None:intergenic 35.0%
GCTTAGAAACAAACCTTGTT+TGG - chr1.1:5171740-5171759 None:intergenic 35.0%
GTTCAATACTCAAATCTTGG+AGG + chr1.1:5171431-5171450 MS.gene24510:CDS 35.0%
TATAATCACATCAAGGATGC+TGG + chr1.1:5171581-5171600 MS.gene24510:CDS 35.0%
TATGTACATGCAGAATGCTT+TGG + chr1.1:5173604-5173623 MS.gene24510:intron 35.0%
TCTACATCAAAGTTCAGTTC+CGG - chr1.1:5173044-5173063 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG + chr1.1:5173119-5173138 MS.gene24510:intron 35.0%
TGGATGAGAAATTTAGCCAT+TGG + chr1.1:5173167-5173186 MS.gene24510:intron 35.0%
TTCTACTTTCAGTCCAAACA+AGG + chr1.1:5171724-5171743 MS.gene24510:CDS 35.0%
TTCTTGTCCATCTTCAGAAA+TGG + chr1.1:5171172-5171191 MS.gene24510:CDS 35.0%
TTTATCCTTGAATGTGTTGG+TGG - chr1.1:5173973-5173992 None:intergenic 35.0%
! AACTTGGATTAGAATGCTGA+GGG + chr1.1:5172121-5172140 MS.gene24510:intron 35.0%
! ATTACAGTATAAGATGGTGG+TGG - chr1.1:5172351-5172370 None:intergenic 35.0%
! TTCCCTGATTGTTCAACTTT+TGG - chr1.1:5172208-5172227 None:intergenic 35.0%
! TTGAGTCAAGCTCATACTTT+TGG + chr1.1:5171308-5171327 MS.gene24510:CDS 35.0%
!! TACTTTTGGAGGTTCTTCAA+TGG + chr1.1:5171322-5171341 MS.gene24510:CDS 35.0%
!!! CTCTTGTTTTGGAGAATCAA+GGG + chr1.1:5171387-5171406 MS.gene24510:CDS 35.0%
AAACTTCCACTTCCATAGGA+AGG - chr1.1:5171473-5171492 None:intergenic 40.0%
AAGATTCCTTCCTATGGAAG+TGG + chr1.1:5171464-5171483 MS.gene24510:CDS 40.0%
ATCATACGGATTTGACTCCT+TGG + chr1.1:5173099-5173118 MS.gene24510:intron 40.0%
ATCCACAAGATTCCTTCCTA+TGG + chr1.1:5171458-5171477 MS.gene24510:CDS 40.0%
ATGCACATGCTTAACACCAA+GGG + chr1.1:5172821-5172840 MS.gene24510:intron 40.0%
ATGGAGTGAAAGATTCTCCA+AGG + chr1.1:5172146-5172165 MS.gene24510:CDS 40.0%
ATGTGTCCGAATATCAGTCA+TGG + chr1.1:5173223-5173242 MS.gene24510:intron 40.0%
ATTCATGTGAGAGCTAGAAG+AGG + chr1.1:5172277-5172296 MS.gene24510:CDS 40.0%
ATTTCATGGCTTCTTCAGCT+TGG + chr1.1:5171267-5171286 MS.gene24510:CDS 40.0%
CCGATGAAGTTCTATGAATC+AGG - chr1.1:5171881-5171900 None:intergenic 40.0%
CCTTGATTCTCCAAAACAAG+AGG - chr1.1:5171389-5171408 None:intergenic 40.0%
CTACATCAAAGTTCAGTTCC+GGG - chr1.1:5173043-5173062 None:intergenic 40.0%
GAACATGTAGCTAACACATC+AGG + chr1.1:5171536-5171555 MS.gene24510:CDS 40.0%
GAACCATCAGAAATCTTCCT+TGG - chr1.1:5172166-5172185 None:intergenic 40.0%
GATTGAGGACTCTATTCATG+AGG + chr1.1:5171640-5171659 MS.gene24510:CDS 40.0%
GCTTGACTCAATGAAACAAG+TGG - chr1.1:5171299-5171318 None:intergenic 40.0%
GGAAGTTTCTCAGAAATGGT+TGG + chr1.1:5171485-5171504 MS.gene24510:CDS 40.0%
TATGCACATGCTTAACACCA+AGG + chr1.1:5172820-5172839 MS.gene24510:intron 40.0%
TATTTCCATGTTGAACAGGG+AGG + chr1.1:5174050-5174069 MS.gene24510:intron 40.0%
TCTCCAAGGAAGATTTCTGA+TGG + chr1.1:5172160-5172179 MS.gene24510:CDS 40.0%
TGAGAAACTTCCACTTCCAT+AGG - chr1.1:5171477-5171496 None:intergenic 40.0%
TGGTGAACAATCTCAGATTG+AGG + chr1.1:5171625-5171644 MS.gene24510:CDS 40.0%
TTCCATAGGAAGGAATCTTG+TGG - chr1.1:5171463-5171482 None:intergenic 40.0%
TTTCATGGCTTCTTCAGCTT+GGG + chr1.1:5171268-5171287 MS.gene24510:CDS 40.0%
TTTCTTCTACTTCCACTACC+AGG - chr1.1:5171686-5171705 None:intergenic 40.0%
! ACTCTTTTTACCTGAGGCAA+AGG - chr1.1:5173520-5173539 None:intergenic 40.0%
! AGTCAAGCTCATACTTTTGG+AGG + chr1.1:5171311-5171330 MS.gene24510:CDS 40.0%
! CACCATTAATTTGACCCCTT+TGG - chr1.1:5171610-5171629 None:intergenic 40.0%
! GAACTTGGATTAGAATGCTG+AGG + chr1.1:5172120-5172139 MS.gene24510:intron 40.0%
! GAATATCAGTCATGGTGTCA+TGG + chr1.1:5173231-5173250 MS.gene24510:intron 40.0%
! TCAGAAATGGTTGGTTCCTT+TGG + chr1.1:5171494-5171513 MS.gene24510:CDS 40.0%
! TTGCTTCAAGAACTTGTTCC+AGG + chr1.1:5172473-5172492 MS.gene24510:CDS 40.0%
! TTTGGGACCCAATGGTAAAT+AGG + chr1.1:5173685-5173704 MS.gene24510:intron 40.0%
! TTTTTACCTGAGGCAAAGGA+GGG - chr1.1:5173516-5173535 None:intergenic 40.0%
!! TCTTTAGAAGCATCTCCACT+CGG - chr1.1:5172250-5172269 None:intergenic 40.0%
!!! CCTCTTGTTTTGGAGAATCA+AGG + chr1.1:5171386-5171405 MS.gene24510:CDS 40.0%
AAAGTTCAGTTCCGGGTTCA+CGG - chr1.1:5173036-5173055 None:intergenic 45.0%
AAGGATGCTGGAATCCAAAG+GGG + chr1.1:5171593-5171612 MS.gene24510:CDS 45.0%
ACTTGTTCCAGGATGCAACA+AGG + chr1.1:5172484-5172503 MS.gene24510:CDS 45.0%
ATTCCCAAACGCAAGTTTCC+AGG + chr1.1:5173453-5173472 MS.gene24510:CDS 45.0%
CAAGGATGCTGGAATCCAAA+GGG + chr1.1:5171592-5171611 MS.gene24510:CDS 45.0%
CGATACCACCAACACATTCA+AGG + chr1.1:5173965-5173984 MS.gene24510:intron 45.0%
GACTCTATTCATGAGGATGG+AGG + chr1.1:5171647-5171666 MS.gene24510:CDS 45.0%
GAGGACTCTATTCATGAGGA+TGG + chr1.1:5171644-5171663 MS.gene24510:CDS 45.0%
GATGCAACAAGGTAGCGATT+TGG + chr1.1:5172495-5172514 MS.gene24510:intron 45.0%
GATTAGAATGCTGAGGGTGA+TGG + chr1.1:5172127-5172146 MS.gene24510:intron 45.0%
GCTAAAGATAACTCTCCGAG+TGG + chr1.1:5172232-5172251 MS.gene24510:CDS 45.0%
TACCCTGGAAACTTGCGTTT+GGG - chr1.1:5173459-5173478 None:intergenic 45.0%
TAGATTCTCCAGTCACGCTT+AGG + chr1.1:5173385-5173404 MS.gene24510:intron 45.0%
TCAAGGATGCTGGAATCCAA+AGG + chr1.1:5171591-5171610 MS.gene24510:CDS 45.0%
TCACGCTTAGGACTTGGAAT+CGG + chr1.1:5173397-5173416 MS.gene24510:CDS 45.0%
TGGAAACTTGCGTTTGGGAA+TGG - chr1.1:5173454-5173473 None:intergenic 45.0%
TTACCCTGGAAACTTGCGTT+TGG - chr1.1:5173460-5173479 None:intergenic 45.0%
TTCAACCTCCCTGTTCAACA+TGG - chr1.1:5174058-5174077 None:intergenic 45.0%
TTCCCAAACGCAAGTTTCCA+GGG + chr1.1:5173454-5173473 MS.gene24510:CDS 45.0%
TTGGTTCCTTTGGCCAACAT+GGG + chr1.1:5171504-5171523 MS.gene24510:CDS 45.0%
! AACTTCATCGGTGTCTCGAT+AGG + chr1.1:5171890-5171909 MS.gene24510:intron 45.0%
! ATTCATGAGGATGGAGGTAC+AGG + chr1.1:5171653-5171672 MS.gene24510:CDS 45.0%
! CTTGACAATTTGGGACCCAA+TGG + chr1.1:5173677-5173696 MS.gene24510:CDS 45.0%
! CTTTTTACCTGAGGCAAAGG+AGG - chr1.1:5173517-5173536 None:intergenic 45.0%
! GGGAACTGTGTTGATGAACT+AGG - chr1.1:5173496-5173515 None:intergenic 45.0%
!!! ACTTTTATAAAATAATATAA+AGG + chr1.1:5172861-5172880 MS.gene24510:intron 5.0%
ACAGCCACAGTCTTGCAGAA+AGG + chr1.1:5172311-5172330 MS.gene24510:CDS 50.0%
AGTTTCCAGGGTAACATGGC+TGG + chr1.1:5173466-5173485 MS.gene24510:CDS 50.0%
ATCACTGCAGCAACAGGTTG+AGG + chr1.1:5172718-5172737 MS.gene24510:CDS 50.0%
ATCGCTACCTTGTTGCATCC+TGG - chr1.1:5172494-5172513 None:intergenic 50.0%
CAGCCACAGTCTTGCAGAAA+GGG + chr1.1:5172312-5172331 MS.gene24510:CDS 50.0%
CGCAAGTTTCCAGGGTAACA+TGG + chr1.1:5173462-5173481 MS.gene24510:CDS 50.0%
GCAGCAGCAGCATCATTTCA+TGG + chr1.1:5171253-5171272 MS.gene24510:CDS 50.0%
GGATGAGAGGAGCTTATACC+AGG - chr1.1:5173433-5173452 None:intergenic 50.0%
GGGTGGTGAGGAAAATGCAA+TGG + chr1.1:5171118-5171137 MS.gene24510:CDS 50.0%
GTACCCTTTCTGCAAGACTG+TGG - chr1.1:5172318-5172337 None:intergenic 50.0%
TGCGTTTGGGAATGGATGAG+AGG - chr1.1:5173446-5173465 None:intergenic 50.0%
TGTGCAATCACTGCAGCAAC+AGG + chr1.1:5172712-5172731 MS.gene24510:CDS 50.0%
TTCCAAGTCCTAAGCGTGAC+TGG - chr1.1:5173396-5173415 None:intergenic 50.0%
TTCTGCAAGACTGTGGCTGT+TGG - chr1.1:5172311-5172330 None:intergenic 50.0%
! GGAATCGGTGGATTTGTTCC+TGG + chr1.1:5173412-5173431 MS.gene24510:CDS 50.0%
! GTTGGTTCCTTTGGCCAACA+TGG + chr1.1:5171503-5171522 MS.gene24510:CDS 50.0%
ACAGGATCTGCACCTGGTAG+TGG + chr1.1:5171671-5171690 MS.gene24510:CDS 55.0%
ACAGTTCCCTCCTTTGCCTC+AGG + chr1.1:5173507-5173526 MS.gene24510:CDS 55.0%
ACCTGACCCATGTTGGCCAA+AGG - chr1.1:5171513-5171532 None:intergenic 55.0%
CGCTTAGGACTTGGAATCGG+TGG + chr1.1:5173400-5173419 MS.gene24510:CDS 55.0%
CTCCAGTCACGCTTAGGACT+TGG + chr1.1:5173391-5173410 MS.gene24510:CDS 55.0%
GAAACTTGCCACCGTGAACC+CGG + chr1.1:5173022-5173041 MS.gene24510:CDS 55.0%
TCCTTTGGCCAACATGGGTC+AGG + chr1.1:5171509-5171528 MS.gene24510:CDS 55.0%
TGCAAGACTGTGGCTGTTGG+TGG - chr1.1:5172308-5172327 None:intergenic 55.0%
TTGGCCAACATGGGTCAGGT+GGG + chr1.1:5171513-5171532 MS.gene24510:CDS 55.0%
TTTGGCCAACATGGGTCAGG+TGG + chr1.1:5171512-5171531 MS.gene24510:CDS 55.0%
GCATGCCAGCCATGTTACCC+TGG - chr1.1:5173474-5173493 None:intergenic 60.0%
GTTCAGTTCCGGGTTCACGG+TGG - chr1.1:5173033-5173052 None:intergenic 60.0%
GTTCCCCACCTGACCCATGT+TGG - chr1.1:5171520-5171539 None:intergenic 60.0%
TGGCCAACATGGGTCAGGTG+GGG + chr1.1:5171514-5171533 MS.gene24510:CDS 60.0%
! GGAGGTACAGGATCTGCACC+TGG + chr1.1:5171665-5171684 MS.gene24510:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 5171116 5174090 5171116 ID=MS.gene24510
chr1.1 mRNA 5171116 5174090 5171116 ID=MS.gene24510.t1;Parent=MS.gene24510
chr1.1 exon 5171116 5171745 5171116 ID=MS.gene24510.t1.exon1;Parent=MS.gene24510.t1
chr1.1 CDS 5171116 5171745 5171116 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5172133 5172333 5172133 ID=MS.gene24510.t1.exon2;Parent=MS.gene24510.t1
chr1.1 CDS 5172133 5172333 5172133 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5172440 5172505 5172440 ID=MS.gene24510.t1.exon3;Parent=MS.gene24510.t1
chr1.1 CDS 5172440 5172505 5172440 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5172671 5172739 5172671 ID=MS.gene24510.t1.exon4;Parent=MS.gene24510.t1
chr1.1 CDS 5172671 5172739 5172671 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5173011 5173082 5173011 ID=MS.gene24510.t1.exon5;Parent=MS.gene24510.t1
chr1.1 CDS 5173011 5173082 5173011 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5173388 5173528 5173388 ID=MS.gene24510.t1.exon6;Parent=MS.gene24510.t1
chr1.1 CDS 5173388 5173528 5173388 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5173617 5173698 5173617 ID=MS.gene24510.t1.exon7;Parent=MS.gene24510.t1
chr1.1 CDS 5173617 5173698 5173617 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1 exon 5174068 5174090 5174068 ID=MS.gene24510.t1.exon8;Parent=MS.gene24510.t1
chr1.1 CDS 5174068 5174090 5174068 ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
Gene Sequence

>MS.gene24510

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGTTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGGTTTGTTTCTAAGCTAAATTTGATATTCAGATATCAATGAATCTTATGCAGGAATTTTTCTTAATAGATGAATGTTAGTTGTTAATTTGTTAGAGGGAGAGAGAAATGTTAGTAGTAGAGATTGAACTTAGACCTGATTCATAGAACTTCATCGGTGTCTCGATAGGATTTGTATTGTTGGTTTGTTTTGTTTATGAGGTTTATGAGATACTAATGAATGAAATATCTTATATATGCTTGGATTAGATCAAACTTTGTTGCTAAGCTAAGTTTGATATTCTTATATCAATGAATCTCATATAGGACTTGTAATGTTTAATTGTATTGTTTCTGAGGTTTTATGAGATACTAATGCAAGAAATGCCTTGTATTATGAACTTGGATTAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTACATACTATAAACCACCACCATCTTATACTGTAATGTTTGTTTTGAGAAATCCATTTTTCTAATGTATACAAAGTTATAATGACTTCTGTTTTTGCTTTTGTAGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGGTAGCGATTTGGTTAAGATGATTGTGTTAAATGGTTTCTTATGATTCGTCGTAACTTGTAACTTATATGGTGACACACTGATTGATATATGTCTCAGTAGATTAATTTCATTTTCTCTTTGTTAATTTTTCTGATGATGATGTCTTTGATTTCTTCTCTTATTAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGGTAAGAGAGCAGTGCCTTGCAATCTTTAAAGTATACATTTATTACTATTATTCAAAGTTCAAACTTGATCTGTTTTGCACTATGCACATGCTTAACACCAAGGGAAATAAAAAAAGGAAATACTTTTATAAAATAATATAAAGGATTTAATCATTTCACTGAATAATGAATATTAAGAGATTGTTTTATGATAATTACATGACTTGAAAGCTTCAATTCCATTATATTTTGGTTTTCCTGGCTATTCATCTTATAAAGATATATTTTGCAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAACGGCTCTTATCCAAAGATGTAAGTGAAGATCTTAATCATACGGATTTGACTCCTTGGAAGTGAACTATTCACTTTGGAGGATAAAGTAAATAATCTCAATTGTGGATGAGAAATTTAGCCATTGGTCTAAAGATATGCTTATGTATAGCAAATCTTAAATGTGTCCGAATATCAGTCATGGTGTCATGGATCTTCTCATTAACTGTTGACATTACTTACTTTATCTTCTAAAGTGAACTATACACGTTTGAAGAGTTACTCTTACGATCTTAGTGCAGTTAATACACAATTGTGATTATGACGTGTATTTCTCTATCAATTAGATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGGTAAAAAGAGTAAAGATCTTTTCAAGTTCAACATTGTGTTATTAAGTCACTTGTTTGTGAAATACTGATATATATTATGTACATGCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAACACTTGACAATTTGGGACCCAATGGTAAATAGGCAGAATCTTTTTTTTTTTTTTTTTTGAAAAACAGTCGAGAAATTTTTGAGATGTGCGAGACAATGTTCCTACAGTATCGGAATATATCAAACTACAAAAAGGTCCTTAAGTGTATCTTTTGCTAGTTATTAAGCGGCTAATAGAGGACACATTCAAAGATCAAACTAACTAACAAAAAATACATTCAAGGATCAAACCGACTAATGAGAGACACATTTGAGGTTGTTTTTATAATTTTTGTTAATTCAAGACTATAGCGATACCACCAACACATTCAAGGATAAAAATGACCATTTACTCTTTTTTCATTGTTTGCACGATATCAATTTTGTCTAATTAATTTATTTCCATGTTGAACAGGGAGGTTGAAACCAGAGTTATAG
Protein sequence

>MS.gene24510.t1

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMVKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTTLDNLGPNGRLKPEL