AlfalfaGEDB | MS.gene24510

M. sativa cultivar XinJiangDaYe / MS.gene24510

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24510.t1	XP_013465951.1	97.7	427	9	1	1	427	1	426	1.40E-220	775.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24510.t1	Q6NKN9	45.2	354	138	13	85	427	58	366	3.5e-55	217.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24510.t1	A0A072VPD3	97.7	427	9	1	1	427	1	426	9.9e-221	775.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24510.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24510.t1	MTR_1g017350	98.361	427	6	1	1	427	1	426	0.0	858
MS.gene24510.t1	MTR_1g017350	97.658	427	6	2	1	427	1	423	0.0	847
MS.gene24510.t1	MTR_1g017350	98.104	422	7	1	1	422	1	421	0.0	847
MS.gene24510.t1	MTR_1g017350	97.393	422	7	2	1	422	1	418	0.0	836
MS.gene24510.t1	MTR_5g048860	54.726	201	63	5	195	391	299	475	3.25e-56	194
MS.gene24510.t1	MTR_8g065740	41.768	328	136	10	93	391	114	415	1.29e-55	191
MS.gene24510.t1	MTR_7g053410	39.752	322	152	8	75	355	91	411	2.26e-51	181
MS.gene24510.t1	MTR_7g053410	39.752	322	152	8	75	355	91	411	3.24e-51	181
MS.gene24510.t1	MTR_3g116770	48.558	208	76	4	233	409	163	370	1.02e-50	176
MS.gene24510.t1	MTR_3g116770	46.890	209	79	4	233	409	163	371	2.22e-50	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24510.t1	AT1G10120	42.438	443	162	20	1	427	1	366	1.03e-76	243
MS.gene24510.t1	AT1G10120	42.438	443	162	20	1	427	1	366	1.03e-76	243
MS.gene24510.t1	AT1G68920	63.871	155	30	3	238	392	286	414	5.49e-55	190
MS.gene24510.t1	AT1G68920	63.871	155	30	3	238	392	286	414	5.49e-55	190
MS.gene24510.t1	AT1G68920	63.871	155	30	3	238	392	286	414	5.49e-55	190
MS.gene24510.t1	AT1G68920	63.871	155	30	3	238	392	285	413	5.49e-55	190
MS.gene24510.t1	AT1G26260	69.231	130	34	2	226	350	133	261	1.05e-51	177
MS.gene24510.t1	AT1G26260	64.583	144	45	2	212	350	148	290	1.99e-51	177
MS.gene24510.t1	AT1G26260	64.583	144	45	2	212	350	170	312	3.25e-51	177
MS.gene24510.t1	AT1G26260	64.583	144	45	2	212	350	170	312	3.25e-51	177

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Find 111 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTAGTGAACGAATG+AGG	0.527173	1.1:+5172450	MS.gene24510:CDS
AAACCAAAAGTTGAACAATC+AGG	0.388796	1.1:+5172202	MS.gene24510:CDS
AAACTTCCACTTCCATAGGA+AGG	0.598638	1.1:-5171470	None:intergenic
AAAGTTCAGTTCCGGGTTCA+CGG	0.473106	1.1:-5173033	None:intergenic
AAATTGTCAAGTGTTGTATT+GGG	0.393591	1.1:-5173665	None:intergenic
AACATGTAGCTAACACATCA+GGG	0.630115	1.1:+5171537	MS.gene24510:CDS
AACCAAAAGTTGAACAATCA+GGG	0.556875	1.1:+5172203	MS.gene24510:CDS
AACTGAACTTTGATGTAGAA+CGG	0.586015	1.1:+5173045	MS.gene24510:CDS
AACTTGGATTAGAATGCTGA+GGG	0.637008	1.1:+5172121	MS.gene24510:intron
AAGATCTTCACTTACATCTT+TGG	0.264618	1.1:-5173075	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATTAGTGAACGAATG+AGG	+	chr1.1:5172450-5172469	MS.gene24510:CDS	30.0%
AAACCAAAAGTTGAACAATC+AGG	+	chr1.1:5172202-5172221	MS.gene24510:CDS	30.0%
AACATTACAGTATAAGATGG+TGG	-	chr1.1:5172354-5172373	None:intergenic	30.0%
AACCAAAAGTTGAACAATCA+GGG	+	chr1.1:5172203-5172222	MS.gene24510:CDS	30.0%
AACTGAACTTTGATGTAGAA+CGG	+	chr1.1:5173045-5173064	MS.gene24510:CDS	30.0%
AAGATCTTCACTTACATCTT+TGG	-	chr1.1:5173078-5173097	None:intergenic	30.0%
AATGCCTTGTATTATGAACT+TGG	+	chr1.1:5172105-5172124	MS.gene24510:intron	30.0%
ACACCAAGGGAAATAAAAAA+AGG	+	chr1.1:5172834-5172853	MS.gene24510:intron	30.0%
ACAGCATTATAATCACATCA+AGG	+	chr1.1:5171574-5171593	MS.gene24510:CDS	30.0%
ACTAGCAAAAGATACACTTA+AGG	-	chr1.1:5173814-5173833	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	5171116	5174090	5171116	ID=MS.gene24510
chr1.1	mRNA	5171116	5174090	5171116	ID=MS.gene24510.t1;Parent=MS.gene24510
chr1.1	exon	5171116	5171745	5171116	ID=MS.gene24510.t1.exon1;Parent=MS.gene24510.t1
chr1.1	CDS	5171116	5171745	5171116	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5172133	5172333	5172133	ID=MS.gene24510.t1.exon2;Parent=MS.gene24510.t1
chr1.1	CDS	5172133	5172333	5172133	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5172440	5172505	5172440	ID=MS.gene24510.t1.exon3;Parent=MS.gene24510.t1
chr1.1	CDS	5172440	5172505	5172440	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5172671	5172739	5172671	ID=MS.gene24510.t1.exon4;Parent=MS.gene24510.t1
chr1.1	CDS	5172671	5172739	5172671	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5173011	5173082	5173011	ID=MS.gene24510.t1.exon5;Parent=MS.gene24510.t1
chr1.1	CDS	5173011	5173082	5173011	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5173388	5173528	5173388	ID=MS.gene24510.t1.exon6;Parent=MS.gene24510.t1
chr1.1	CDS	5173388	5173528	5173388	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5173617	5173698	5173617	ID=MS.gene24510.t1.exon7;Parent=MS.gene24510.t1
chr1.1	CDS	5173617	5173698	5173617	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1
chr1.1	exon	5174068	5174090	5174068	ID=MS.gene24510.t1.exon8;Parent=MS.gene24510.t1
chr1.1	CDS	5174068	5174090	5174068	ID=cds.MS.gene24510.t1;Parent=MS.gene24510.t1

Gene Sequence

>MS.gene24510

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGTTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGGTTTGTTTCTAAGCTAAATTTGATATTCAGATATCAATGAATCTTATGCAGGAATTTTTCTTAATAGATGAATGTTAGTTGTTAATTTGTTAGAGGGAGAGAGAAATGTTAGTAGTAGAGATTGAACTTAGACCTGATTCATAGAACTTCATCGGTGTCTCGATAGGATTTGTATTGTTGGTTTGTTTTGTTTATGAGGTTTATGAGATACTAATGAATGAAATATCTTATATATGCTTGGATTAGATCAAACTTTGTTGCTAAGCTAAGTTTGATATTCTTATATCAATGAATCTCATATAGGACTTGTAATGTTTAATTGTATTGTTTCTGAGGTTTTATGAGATACTAATGCAAGAAATGCCTTGTATTATGAACTTGGATTAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTACATACTATAAACCACCACCATCTTATACTGTAATGTTTGTTTTGAGAAATCCATTTTTCTAATGTATACAAAGTTATAATGACTTCTGTTTTTGCTTTTGTAGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGGTAGCGATTTGGTTAAGATGATTGTGTTAAATGGTTTCTTATGATTCGTCGTAACTTGTAACTTATATGGTGACACACTGATTGATATATGTCTCAGTAGATTAATTTCATTTTCTCTTTGTTAATTTTTCTGATGATGATGTCTTTGATTTCTTCTCTTATTAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGGTAAGAGAGCAGTGCCTTGCAATCTTTAAAGTATACATTTATTACTATTATTCAAAGTTCAAACTTGATCTGTTTTGCACTATGCACATGCTTAACACCAAGGGAAATAAAAAAAGGAAATACTTTTATAAAATAATATAAAGGATTTAATCATTTCACTGAATAATGAATATTAAGAGATTGTTTTATGATAATTACATGACTTGAAAGCTTCAATTCCATTATATTTTGGTTTTCCTGGCTATTCATCTTATAAAGATATATTTTGCAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAACGGCTCTTATCCAAAGATGTAAGTGAAGATCTTAATCATACGGATTTGACTCCTTGGAAGTGAACTATTCACTTTGGAGGATAAAGTAAATAATCTCAATTGTGGATGAGAAATTTAGCCATTGGTCTAAAGATATGCTTATGTATAGCAAATCTTAAATGTGTCCGAATATCAGTCATGGTGTCATGGATCTTCTCATTAACTGTTGACATTACTTACTTTATCTTCTAAAGTGAACTATACACGTTTGAAGAGTTACTCTTACGATCTTAGTGCAGTTAATACACAATTGTGATTATGACGTGTATTTCTCTATCAATTAGATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGGTAAAAAGAGTAAAGATCTTTTCAAGTTCAACATTGTGTTATTAAGTCACTTGTTTGTGAAATACTGATATATATTATGTACATGCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAACACTTGACAATTTGGGACCCAATGGTAAATAGGCAGAATCTTTTTTTTTTTTTTTTTTGAAAAACAGTCGAGAAATTTTTGAGATGTGCGAGACAATGTTCCTACAGTATCGGAATATATCAAACTACAAAAAGGTCCTTAAGTGTATCTTTTGCTAGTTATTAAGCGGCTAATAGAGGACACATTCAAAGATCAAACTAACTAACAAAAAATACATTCAAGGATCAAACCGACTAATGAGAGACACATTTGAGGTTGTTTTTATAATTTTTGTTAATTCAAGACTATAGCGATACCACCAACACATTCAAGGATAAAAATGACCATTTACTCTTTTTTCATTGTTTGCACGATATCAATTTTGTCTAATTAATTTATTTCCATGTTGAACAGGGAGGTTGAAACCAGAGTTATAG

Protein sequence

>MS.gene24510.t1

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMVKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTTLDNLGPNGRLKPEL