Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24602.t1 | XP_024632961.1 | 72.7 | 576 | 45 | 6 | 1 | 464 | 1 | 576 | 5.00E-208 | 733.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24602.t1 | Q9SZL8 | 30.7 | 322 | 200 | 6 | 52 | 367 | 74 | 378 | 4.2e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24602.t1 | D3YBB9 | 63.8 | 525 | 86 | 5 | 44 | 464 | 76 | 600 | 3.9e-178 | 634.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24602.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24602.t1 | MTR_0558s0020 | 88.424 | 311 | 21 | 1 | 1 | 311 | 1 | 296 | 0.0 | 572 |
| MS.gene24602.t1 | MTR_1g083640 | 94.406 | 286 | 16 | 0 | 1 | 286 | 1 | 286 | 0.0 | 565 |
| MS.gene24602.t1 | MTR_8g446020 | 76.206 | 311 | 19 | 3 | 1 | 311 | 1 | 256 | 3.38e-164 | 463 |
| MS.gene24602.t1 | MTR_6g090505 | 71.084 | 332 | 65 | 5 | 81 | 407 | 1 | 306 | 1.00e-159 | 456 |
| MS.gene24602.t1 | MTR_2g014100 | 86.561 | 253 | 25 | 2 | 1 | 252 | 1 | 245 | 9.00e-157 | 444 |
| MS.gene24602.t1 | MTR_0337s0040 | 73.913 | 276 | 18 | 2 | 1 | 276 | 1 | 222 | 3.70e-137 | 394 |
| MS.gene24602.t1 | MTR_3g008240 | 84.404 | 218 | 19 | 1 | 1 | 218 | 1 | 203 | 2.73e-129 | 373 |
| MS.gene24602.t1 | MTR_4g040430 | 84.404 | 218 | 14 | 3 | 1 | 218 | 1 | 198 | 1.68e-126 | 365 |
| MS.gene24602.t1 | MTR_5g071590 | 86.957 | 184 | 21 | 1 | 1 | 184 | 1 | 181 | 5.32e-115 | 336 |
| MS.gene24602.t1 | MTR_0019s0290 | 89.474 | 152 | 16 | 0 | 98 | 249 | 9 | 160 | 1.61e-96 | 288 |
| MS.gene24602.t1 | MTR_1g055240 | 93.706 | 143 | 9 | 0 | 106 | 248 | 2 | 144 | 8.48e-96 | 285 |
| MS.gene24602.t1 | MTR_1281s0010 | 92.661 | 109 | 8 | 0 | 35 | 143 | 1 | 109 | 1.06e-67 | 212 |
| MS.gene24602.t1 | MTR_6g051425 | 31.077 | 325 | 179 | 8 | 56 | 357 | 22 | 324 | 1.14e-38 | 143 |
| MS.gene24602.t1 | MTR_8g046060 | 77.083 | 96 | 13 | 2 | 1 | 95 | 91 | 178 | 3.12e-36 | 133 |
| MS.gene24602.t1 | MTR_0337s0060 | 55.882 | 136 | 44 | 4 | 332 | 463 | 2 | 125 | 3.93e-36 | 134 |
| MS.gene24602.t1 | MTR_4g008820 | 74.737 | 95 | 9 | 1 | 1 | 95 | 125 | 204 | 1.41e-34 | 137 |
| MS.gene24602.t1 | MTR_1g070355 | 28.458 | 253 | 158 | 6 | 57 | 307 | 80 | 311 | 2.47e-20 | 94.4 |
| MS.gene24602.t1 | MTR_0337s0050 | 83.333 | 36 | 6 | 0 | 275 | 310 | 14 | 49 | 6.88e-15 | 70.1 |
| MS.gene24602.t1 | MTR_1g013060 | 28.636 | 220 | 136 | 8 | 56 | 272 | 29 | 230 | 4.51e-13 | 68.9 |
| MS.gene24602.t1 | MTR_0402s0040 | 27.419 | 186 | 114 | 5 | 65 | 249 | 40 | 205 | 9.07e-13 | 70.5 |
| MS.gene24602.t1 | MTR_4g035820 | 22.039 | 304 | 202 | 7 | 21 | 315 | 47 | 324 | 5.02e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24602.t1 | AT4G38180 | 30.330 | 333 | 204 | 7 | 52 | 378 | 74 | 384 | 2.84e-41 | 157 |
| MS.gene24602.t1 | AT3G06250 | 26.706 | 337 | 179 | 7 | 39 | 367 | 178 | 454 | 4.24e-30 | 124 |
| MS.gene24602.t1 | AT3G06250 | 26.706 | 337 | 179 | 7 | 39 | 367 | 178 | 454 | 4.24e-30 | 124 |
| MS.gene24602.t1 | AT3G06250 | 26.706 | 337 | 179 | 7 | 39 | 367 | 178 | 454 | 4.24e-30 | 124 |
| MS.gene24602.t1 | AT5G28530 | 28.076 | 317 | 198 | 6 | 56 | 360 | 60 | 358 | 5.23e-29 | 120 |
| MS.gene24602.t1 | AT5G28530 | 28.076 | 317 | 198 | 6 | 56 | 360 | 60 | 358 | 6.18e-29 | 120 |
| MS.gene24602.t1 | AT5G28530 | 28.076 | 317 | 198 | 6 | 56 | 360 | 60 | 358 | 6.18e-29 | 120 |
| MS.gene24602.t1 | AT4G15090 | 28.667 | 300 | 193 | 6 | 66 | 364 | 66 | 345 | 3.98e-26 | 112 |
| MS.gene24602.t1 | AT4G15090 | 28.667 | 300 | 193 | 6 | 66 | 364 | 66 | 345 | 3.98e-26 | 112 |
| MS.gene24602.t1 | AT4G15090 | 28.667 | 300 | 193 | 6 | 66 | 364 | 66 | 345 | 3.98e-26 | 112 |
| MS.gene24602.t1 | AT4G15090 | 28.667 | 300 | 193 | 6 | 66 | 364 | 66 | 345 | 3.98e-26 | 112 |
| MS.gene24602.t1 | AT4G15090 | 28.667 | 300 | 193 | 6 | 66 | 364 | 66 | 345 | 3.98e-26 | 112 |
| MS.gene24602.t1 | AT2G27110 | 36.842 | 133 | 84 | 0 | 229 | 361 | 181 | 313 | 1.00e-25 | 111 |
| MS.gene24602.t1 | AT2G27110 | 36.842 | 133 | 84 | 0 | 229 | 361 | 181 | 313 | 1.00e-25 | 111 |
| MS.gene24602.t1 | AT2G27110 | 36.842 | 133 | 84 | 0 | 229 | 361 | 36 | 168 | 1.23e-25 | 110 |
| MS.gene24602.t1 | AT5G18960 | 25.275 | 364 | 198 | 12 | 37 | 387 | 197 | 499 | 3.18e-25 | 109 |
| MS.gene24602.t1 | AT5G18960 | 25.275 | 364 | 198 | 12 | 37 | 387 | 197 | 499 | 3.18e-25 | 109 |
| MS.gene24602.t1 | AT1G80010 | 28.662 | 314 | 191 | 10 | 57 | 362 | 101 | 389 | 5.60e-25 | 108 |
| MS.gene24602.t1 | AT1G10240 | 24.606 | 317 | 219 | 7 | 48 | 361 | 45 | 344 | 5.24e-24 | 105 |
| MS.gene24602.t1 | AT1G10240 | 24.606 | 317 | 219 | 7 | 48 | 361 | 45 | 344 | 5.24e-24 | 105 |
| MS.gene24602.t1 | AT1G76320 | 27.852 | 298 | 183 | 9 | 66 | 361 | 12 | 279 | 2.39e-23 | 103 |
| MS.gene24602.t1 | AT1G76320 | 27.181 | 298 | 185 | 8 | 66 | 361 | 12 | 279 | 3.13e-23 | 103 |
| MS.gene24602.t1 | AT1G76320 | 27.181 | 298 | 185 | 8 | 66 | 361 | 12 | 279 | 3.13e-23 | 103 |
| MS.gene24602.t1 | AT1G76320 | 27.181 | 298 | 185 | 8 | 66 | 361 | 12 | 279 | 3.32e-23 | 103 |
| MS.gene24602.t1 | AT4G38170 | 41.441 | 111 | 60 | 2 | 251 | 360 | 24 | 130 | 3.47e-23 | 102 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.29e-21 | 97.8 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.73e-21 | 97.8 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.73e-21 | 97.8 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.73e-21 | 97.8 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.75e-21 | 97.8 |
| MS.gene24602.t1 | AT2G32250 | 26.225 | 347 | 190 | 10 | 15 | 361 | 6 | 286 | 2.75e-21 | 97.8 |
| MS.gene24602.t1 | AT1G52520 | 26.361 | 349 | 209 | 11 | 57 | 394 | 91 | 402 | 5.10e-21 | 96.7 |
| MS.gene24602.t1 | AT2G32250 | 27.027 | 296 | 154 | 8 | 66 | 361 | 12 | 245 | 5.26e-21 | 96.7 |
| MS.gene24602.t1 | AT2G32250 | 27.027 | 296 | 154 | 8 | 66 | 361 | 12 | 245 | 5.65e-21 | 96.7 |
| MS.gene24602.t1 | AT3G22170 | 22.865 | 363 | 233 | 7 | 1 | 360 | 32 | 350 | 6.49e-20 | 93.6 |
| MS.gene24602.t1 | AT3G22170 | 22.865 | 363 | 233 | 7 | 1 | 360 | 32 | 350 | 6.49e-20 | 93.6 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 163 | 302 | 2.88e-16 | 82.0 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 163 | 302 | 2.88e-16 | 82.0 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 163 | 302 | 3.46e-16 | 81.6 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 177 | 316 | 3.54e-16 | 81.6 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 163 | 302 | 3.59e-16 | 81.6 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 163 | 302 | 3.59e-16 | 81.6 |
| MS.gene24602.t1 | AT4G19990 | 32.143 | 140 | 88 | 2 | 235 | 367 | 106 | 245 | 3.62e-16 | 81.6 |
Find 60 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 1.3:-46341257 | MS.gene24602:intron |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 1.3:+46341130 | None:intergenic |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 1.3:+46342418 | None:intergenic |
| GGTAATTATGCATATAAAAC+TGG | 0.302948 | 1.3:-46342562 | MS.gene24602:CDS |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1.3:+46342227 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1.3:-46341911 | MS.gene24602:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1.3:+46341861 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 1.3:+46341244 | None:intergenic |
| GAGGGATAATCATGCTGAAT+TGG | 0.376108 | 1.3:-46340675 | MS.gene24602:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 1.3:-46341854 | MS.gene24602:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1.3:-46341862 | MS.gene24602:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 1.3:-46342152 | MS.gene24602:CDS |
| TCATGCTGAATTGGACTTCA+AGG | 0.399206 | 1.3:-46340666 | MS.gene24602:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1.3:-46340534 | MS.gene24602:CDS |
| TCAATGTGTATAAGATATAT+AGG | 0.401888 | 1.3:-46342300 | MS.gene24602:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 1.3:-46342139 | MS.gene24602:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1.3:-46342214 | MS.gene24602:CDS |
| ACAAAATAAGAAATTTGATA+AGG | 0.431852 | 1.3:-46342500 | MS.gene24602:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.3:-46342349 | MS.gene24602:CDS |
| AACCGCATCAGCTGACTGTT+AGG | 0.450316 | 1.3:+46340614 | None:intergenic |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1.3:-46342184 | MS.gene24602:CDS |
| TCCATGATACTTTATTGCTA+GGG | 0.464004 | 1.3:+46342629 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 1.3:-46342151 | MS.gene24602:CDS |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 1.3:-46342429 | MS.gene24602:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 1.3:-46340568 | MS.gene24602:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 1.3:+46342100 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1.3:+46340532 | None:intergenic |
| TTCCATGATACTTTATTGCT+AGG | 0.489989 | 1.3:+46342628 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.3:-46340694 | MS.gene24602:intron |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 1.3:-46342466 | MS.gene24602:CDS |
| AGCTGGAATATCTTTGAAGC+TGG | 0.496270 | 1.3:-46342332 | MS.gene24602:CDS |
| CCCCTAGCAATAAAGTATCA+TGG | 0.498381 | 1.3:-46342630 | MS.gene24602:CDS |
| TATGAGGAGGACACGACAAA+AGG | 0.501557 | 1.3:-46340518 | MS.gene24602:CDS |
| CTAAGGTAACATGAATGCTC+TGG | 0.504903 | 1.3:+46342244 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 1.3:-46342455 | MS.gene24602:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.517705 | 1.3:+46342256 | None:intergenic |
| TTACAACCAACCCTTTCCTC+CGG | 0.518116 | 1.3:+46342355 | None:intergenic |
| TGTCTTCTGTAGCATCAACT+TGG | 0.520245 | 1.3:+46341966 | None:intergenic |
| TGTGTATAAGATATATAGGT+GGG | 0.523740 | 1.3:-46342296 | MS.gene24602:CDS |
| ATGAGGAGGACACGACAAAA+GGG | 0.528774 | 1.3:-46340517 | MS.gene24602:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1.3:+46340537 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1.3:-46341045 | MS.gene24602:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 1.3:+46341099 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 1.3:-46342454 | MS.gene24602:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | 1.3:+46342391 | None:intergenic |
| GGAGTAACATTGAGAACTAT+CGG | 0.556951 | 1.3:+46342651 | None:intergenic |
| CCATGATACTTTATTGCTAG+GGG | 0.563054 | 1.3:+46342630 | None:intergenic |
| CACGACAAAAGGGTCTGCGT+TGG | 0.568588 | 1.3:-46340507 | MS.gene24602:CDS |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 1.3:-46342136 | MS.gene24602:CDS |
| TTACTGATTCATGCTGAGAG+TGG | 0.579535 | 1.3:-46342709 | MS.gene24602:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 1.3:-46342145 | MS.gene24602:CDS |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 1.3:+46340572 | None:intergenic |
| ATCCTAACAGTCAGCTGATG+CGG | 0.594920 | 1.3:-46340616 | MS.gene24602:CDS |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | 1.3:-46342407 | MS.gene24602:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1.3:-46340531 | MS.gene24602:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 1.3:-46342754 | MS.gene24602:CDS |
| ATGTGTATAAGATATATAGG+TGG | 0.627476 | 1.3:-46342297 | MS.gene24602:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.3:-46340693 | MS.gene24602:intron |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 1.3:+46341119 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 1.3:-46341117 | MS.gene24602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAGAAATTTGATA+AGG | - | chr1.3:46340756-46340775 | MS.gene24602:intron | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr1.3:46342351-46342370 | MS.gene24602:CDS | 15.0% |
| !! | AAAAATAAACACTAACCTAA+TGG | + | chr1.3:46341420-46341439 | None:intergenic | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr1.3:46341780-46341799 | MS.gene24602:intron | 20.0% |
| !! | TCAATGTGTATAAGATATAT+AGG | - | chr1.3:46340956-46340975 | MS.gene24602:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr1.3:46340673-46340692 | MS.gene24602:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr1.3:46342322-46342341 | MS.gene24602:CDS | 20.0% |
| !!! | ATAAAACTGGATTTTCTATT+AGG | - | chr1.3:46340707-46340726 | MS.gene24602:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr1.3:46342323-46342342 | MS.gene24602:CDS | 20.0% |
| !!! | CATGTTGTAATTTTTTTTTC+TGG | - | chr1.3:46341490-46341509 | MS.gene24602:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr1.3:46342355-46342374 | MS.gene24602:CDS | 20.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr1.3:46341394-46341413 | MS.gene24602:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr1.3:46342015-46342034 | None:intergenic | 25.0% |
| ! | ATGTGTATAAGATATATAGG+TGG | - | chr1.3:46340959-46340978 | MS.gene24602:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr1.3:46341683-46341702 | MS.gene24602:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr1.3:46341345-46341364 | MS.gene24602:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr1.3:46342722-46342741 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr1.3:46342548-46342567 | MS.gene24602:CDS | 25.0% |
| ! | GGTAATTATGCATATAAAAC+TGG | - | chr1.3:46340694-46340713 | MS.gene24602:intron | 25.0% |
| ! | TAAAGAATAGAACAAGTGAA+TGG | + | chr1.3:46342533-46342552 | None:intergenic | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr1.3:46341273-46341292 | None:intergenic | 25.0% |
| ! | TGTGTATAAGATATATAGGT+GGG | - | chr1.3:46340960-46340979 | MS.gene24602:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr1.3:46342722-46342741 | MS.gene24602:CDS | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | - | chr1.3:46341467-46341486 | MS.gene24602:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1.3:46341307-46341326 | MS.gene24602:intron | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr1.3:46341308-46341327 | MS.gene24602:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr1.3:46341707-46341726 | MS.gene24602:intron | 25.0% |
| AAATCCCTAAACAAACAAGT+AGG | + | chr1.3:46341591-46341610 | None:intergenic | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr1.3:46340802-46340821 | MS.gene24602:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr1.3:46341402-46341421 | MS.gene24602:intron | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr1.3:46341105-46341124 | MS.gene24602:intron | 30.0% | |
| AGACTAGCAATGACTAATTA+AGG | - | chr1.3:46341863-46341882 | MS.gene24602:CDS | 30.0% | |
| AGTTCCTACTTGTTTGTTTA+GGG | - | chr1.3:46341584-46341603 | MS.gene24602:intron | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr1.3:46340790-46340809 | MS.gene24602:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr1.3:46342727-46342746 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr1.3:46342725-46342744 | MS.gene24602:CDS | 30.0% | |
| GACTAGCAATGACTAATTAA+GGG | - | chr1.3:46341864-46341883 | MS.gene24602:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr1.3:46341398-46341417 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr1.3:46341999-46342018 | MS.gene24602:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr1.3:46340801-46340820 | MS.gene24602:intron | 30.0% | |
| TCCATGATACTTTATTGCTA+GGG | + | chr1.3:46340630-46340649 | None:intergenic | 30.0% | |
| TGTGAAAGTGAAAGAAAAAC+CGG | - | chr1.3:46340882-46340901 | MS.gene24602:intron | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr1.3:46341032-46341051 | None:intergenic | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | + | chr1.3:46340868-46340887 | None:intergenic | 30.0% | |
| TTCCATGATACTTTATTGCT+AGG | + | chr1.3:46340631-46340650 | None:intergenic | 30.0% | |
| TTGTCTAAGTAAATATGCCT+AGG | + | chr1.3:46341727-46341746 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr1.3:46341159-46341178 | None:intergenic | 30.0% | |
| ! | CATACGATTTTCGTAAGTTT+GGG | + | chr1.3:46342406-46342425 | None:intergenic | 30.0% |
| ! | TCAATTTCGAATAGTTTTCC+AGG | - | chr1.3:46342179-46342198 | MS.gene24602:CDS | 30.0% |
| ! | TCTTTCAATGCTTTTCTTTG+TGG | - | chr1.3:46342492-46342511 | MS.gene24602:CDS | 30.0% |
| ! | TTTTGACGAGGTAACTAATT+TGG | - | chr1.3:46342281-46342300 | MS.gene24602:CDS | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr1.3:46341072-46341091 | MS.gene24602:intron | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr1.3:46342032-46342051 | MS.gene24602:CDS | 30.0% |
| AAAAACCCCATGAAACCAAA+TGG | + | chr1.3:46341625-46341644 | None:intergenic | 35.0% | |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr1.3:46342129-46342148 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr1.3:46341194-46341213 | MS.gene24602:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr1.3:46342562-46342581 | MS.gene24602:CDS | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | - | chr1.3:46341868-46341887 | MS.gene24602:CDS | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr1.3:46340502-46340521 | MS.gene24602:CDS | 35.0% | |
| CAGATATCAAACCTGAAAGA+TGG | - | chr1.3:46341653-46341672 | MS.gene24602:intron | 35.0% | |
| CAGTTCCTACTTGTTTGTTT+AGG | - | chr1.3:46341583-46341602 | MS.gene24602:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr1.3:46342563-46342582 | MS.gene24602:CDS | 35.0% | |
| CCATGATACTTTATTGCTAG+GGG | + | chr1.3:46340629-46340648 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr1.3:46341042-46341061 | MS.gene24602:CDS | 35.0% | |
| CTGGCATGTGTATTATAAGT+AGG | - | chr1.3:46341530-46341549 | MS.gene24602:intron | 35.0% | |
| CTTACGAAAATCGTATGCAT+TGG | - | chr1.3:46342409-46342428 | MS.gene24602:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr1.3:46342688-46342707 | MS.gene24602:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr1.3:46341191-46341210 | MS.gene24602:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr1.3:46341104-46341123 | MS.gene24602:intron | 35.0% | |
| GAGAATGCAAAGAAAAAGCT+TGG | - | chr1.3:46342236-46342255 | MS.gene24602:CDS | 35.0% | |
| GGAGTAACATTGAGAACTAT+CGG | + | chr1.3:46340608-46340627 | None:intergenic | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | - | chr1.3:46340827-46340846 | MS.gene24602:intron | 35.0% | |
| TAGGAACTGTAGTAAATCCT+AGG | + | chr1.3:46341572-46341591 | None:intergenic | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr1.3:46341111-46341130 | MS.gene24602:intron | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr1.3:46342687-46342706 | None:intergenic | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | - | chr1.3:46341873-46341892 | MS.gene24602:CDS | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | + | chr1.3:46341667-46341686 | None:intergenic | 35.0% | |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr1.3:46342191-46342210 | MS.gene24602:CDS | 35.0% |
| ! | ATTTTCTTGCTTCTGCCATT+TGG | - | chr1.3:46341607-46341626 | MS.gene24602:intron | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr1.3:46341003-46341022 | None:intergenic | 35.0% |
| ! | GCATACGATTTTCGTAAGTT+TGG | + | chr1.3:46342407-46342426 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr1.3:46342192-46342211 | MS.gene24602:CDS | 35.0% |
| !! | CATCTTTCAGGTTTGATATC+TGG | + | chr1.3:46341655-46341674 | None:intergenic | 35.0% |
| !!! | AACAGTGCATTTTTTTGACG+AGG | - | chr1.3:46342269-46342288 | MS.gene24602:CDS | 35.0% |
| !!! | AGATAGCAGCTACTTTTGAT+TGG | - | chr1.3:46342075-46342094 | MS.gene24602:CDS | 35.0% |
| !!! | GGCATGTTGTTTTTTTGTTC+TGG | - | chr1.3:46341511-46341530 | MS.gene24602:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr1.3:46342204-46342223 | MS.gene24602:CDS | 35.0% |
| ACAGACGATTTATACAGACC+AGG | - | chr1.3:46342139-46342158 | MS.gene24602:CDS | 40.0% | |
| ATTGAGTTTACGCATTGCTG+AGG | - | chr1.3:46341814-46341833 | MS.gene24602:intron | 40.0% | |
| CGATCACACAAGACAATTTC+AGG | + | chr1.3:46341751-46341770 | None:intergenic | 40.0% | |
| CTAAGGTAACATGAATGCTC+TGG | + | chr1.3:46341015-46341034 | None:intergenic | 40.0% | |
| GAAAGAAAAACCGGAGGAAA+GGG | - | chr1.3:46340891-46340910 | MS.gene24602:intron | 40.0% | |
| GAAAGTGAAAGAAAAACCGG+AGG | - | chr1.3:46340885-46340904 | MS.gene24602:intron | 40.0% | |
| GAGGGATAATCATGCTGAAT+TGG | - | chr1.3:46342581-46342600 | MS.gene24602:CDS | 40.0% | |
| TCATGCTGAATTGGACTTCA+AGG | - | chr1.3:46342590-46342609 | MS.gene24602:CDS | 40.0% | |
| TCTGATGTTGTCCTGTTGTT+AGG | + | chr1.3:46340841-46340860 | None:intergenic | 40.0% | |
| TGAAAGAAAAACCGGAGGAA+AGG | - | chr1.3:46340890-46340909 | MS.gene24602:intron | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr1.3:46342140-46342159 | None:intergenic | 40.0% | |
| TGTCTTCTGTAGCATCAACT+TGG | + | chr1.3:46341293-46341312 | None:intergenic | 40.0% | |
| ! | CCCCTAGCAATAAAGTATCA+TGG | - | chr1.3:46340626-46340645 | MS.gene24602:CDS | 40.0% |
| ! | CTTCTGCCATTTGGTTTCAT+GGG | - | chr1.3:46341616-46341635 | MS.gene24602:intron | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | - | chr1.3:46341552-46341571 | MS.gene24602:intron | 40.0% |
| ! | GCACGAAGAATCTTCCTTTT+CGG | - | chr1.3:46341142-46341161 | MS.gene24602:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr1.3:46342444-46342463 | MS.gene24602:CDS | 40.0% |
| ! | TTCTGCCATTTGGTTTCATG+GGG | - | chr1.3:46341617-46341636 | MS.gene24602:intron | 40.0% |
| !! | AGCTGGAATATCTTTGAAGC+TGG | - | chr1.3:46340924-46340943 | MS.gene24602:intron | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1.3:46342422-46342441 | MS.gene24602:CDS | 40.0% |
| !! | TTACTGATTCATGCTGAGAG+TGG | - | chr1.3:46340547-46340566 | MS.gene24602:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr1.3:46341315-46341334 | MS.gene24602:intron | 40.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr1.3:46342160-46342179 | None:intergenic | 45.0% | |
| ATCCTAACAGTCAGCTGATG+CGG | - | chr1.3:46342640-46342659 | MS.gene24602:CDS | 45.0% | |
| ATGAGGAGGACACGACAAAA+GGG | - | chr1.3:46342739-46342758 | MS.gene24602:CDS | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr1.3:46342200-46342219 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | - | chr1.3:46342373-46342392 | MS.gene24602:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr1.3:46341117-46341136 | MS.gene24602:CDS | 45.0% | |
| GACAACATCAGACAGTCCAT+TGG | - | chr1.3:46340849-46340868 | MS.gene24602:intron | 45.0% | |
| TATGAGGAGGACACGACAAA+AGG | - | chr1.3:46342738-46342757 | MS.gene24602:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+CGG | + | chr1.3:46340904-46340923 | None:intergenic | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | + | chr1.3:46342381-46342400 | None:intergenic | 45.0% |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr1.3:46341198-46341217 | MS.gene24602:CDS | 45.0% |
| ! | GCTTCTGCCATTTGGTTTCA+TGG | - | chr1.3:46341615-46341634 | MS.gene24602:intron | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1.3:46340907-46340926 | MS.gene24602:intron | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1.3:46342421-46342440 | MS.gene24602:CDS | 45.0% |
| AACCGCATCAGCTGACTGTT+AGG | + | chr1.3:46342645-46342664 | None:intergenic | 50.0% | |
| GAAAAACCGGAGGAAAGGGT+TGG | - | chr1.3:46340895-46340914 | MS.gene24602:intron | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | - | chr1.3:46342376-46342395 | MS.gene24602:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr1.3:46341120-46341139 | MS.gene24602:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr1.3:46342211-46342230 | MS.gene24602:CDS | 50.0% |
| CACGACAAAAGGGTCTGCGT+TGG | - | chr1.3:46342749-46342768 | MS.gene24602:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46340493 | 46342785 | 46340493 | ID=MS.gene24602 |
| chr1.3 | mRNA | 46340493 | 46342785 | 46340493 | ID=MS.gene24602.t1;Parent=MS.gene24602 |
| chr1.3 | exon | 46341855 | 46342785 | 46341855 | ID=MS.gene24602.t1.exon1;Parent=MS.gene24602.t1 |
| chr1.3 | CDS | 46341855 | 46342785 | 46341855 | ID=cds.MS.gene24602.t1;Parent=MS.gene24602.t1 |
| chr1.3 | exon | 46341114 | 46341269 | 46341114 | ID=MS.gene24602.t1.exon2;Parent=MS.gene24602.t1 |
| chr1.3 | CDS | 46341114 | 46341269 | 46341114 | ID=cds.MS.gene24602.t1;Parent=MS.gene24602.t1 |
| chr1.3 | exon | 46340988 | 46341085 | 46340988 | ID=MS.gene24602.t1.exon3;Parent=MS.gene24602.t1 |
| chr1.3 | CDS | 46340988 | 46341085 | 46340988 | ID=cds.MS.gene24602.t1;Parent=MS.gene24602.t1 |
| chr1.3 | exon | 46340493 | 46340702 | 46340493 | ID=MS.gene24602.t1.exon4;Parent=MS.gene24602.t1 |
| chr1.3 | CDS | 46340493 | 46340702 | 46340493 | ID=cds.MS.gene24602.t1;Parent=MS.gene24602.t1 |
| Gene Sequence |
| Protein sequence |
