AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24766

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24766.t1 MTR_0402s0040 57.286 199 57 1 30 200 2 200 1.84e-69 227
MS.gene24766.t1 MTR_0137s0040 61.594 138 28 1 19 156 1 113 4.29e-49 162
MS.gene24766.t1 MTR_5g015480 54.598 174 44 3 10 154 18 185 1.49e-48 166
MS.gene24766.t1 MTR_1g086270 81.707 82 15 0 320 401 1 82 1.39e-44 150
MS.gene24766.t1 MTR_6g017200 62.069 116 40 1 20 131 20 135 4.01e-42 145
MS.gene24766.t1 MTR_1g057920 65.138 109 38 0 23 131 3 111 9.27e-42 143
MS.gene24766.t1 MTR_2g070590 66.667 90 30 0 42 131 5 94 3.64e-35 126
MS.gene24766.t1 MTR_6g051425 29.739 306 159 7 61 319 24 320 3.99e-35 132
MS.gene24766.t1 MTR_0558s0020 31.579 247 121 7 68 266 50 296 2.70e-30 118
MS.gene24766.t1 MTR_7g113010 45.000 160 45 2 20 150 423 568 1.06e-28 118
MS.gene24766.t1 MTR_7g074790 41.290 155 80 3 51 195 7 160 1.08e-26 107
MS.gene24766.t1 MTR_8g446020 36.691 139 87 1 129 266 118 256 1.39e-25 104
MS.gene24766.t1 MTR_1g070355 30.992 242 130 6 53 260 71 309 4.65e-25 107
MS.gene24766.t1 MTR_6g090505 39.130 138 83 1 129 265 93 230 1.24e-24 104
MS.gene24766.t1 MTR_4g102720 38.732 142 80 2 51 192 4 138 1.65e-24 100
MS.gene24766.t1 MTR_0291s0060 61.644 73 28 0 32 104 13 85 1.95e-23 94.0
MS.gene24766.t1 MTR_4g035820 28.522 291 155 10 25 270 42 324 2.71e-19 90.5
MS.gene24766.t1 MTR_5g039760 32.979 188 103 5 48 221 4 182 2.10e-18 83.2
MS.gene24766.t1 MTR_1g091013 67.857 56 18 0 67 122 14 69 6.67e-17 75.1
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 40 131 3.59e-16 77.8
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 40 131 3.68e-16 77.8
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 60 151 5.53e-16 77.8
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 60 151 5.58e-16 77.8
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 58 149 5.90e-16 77.4
MS.gene24766.t1 MTR_4g067290 44.086 93 48 2 41 130 100 191 6.46e-16 78.2
MS.gene24766.t1 MTR_1g083640 26.778 239 122 8 52 237 44 282 7.87e-16 77.8
MS.gene24766.t1 MTR_7g446520 29.060 234 141 6 57 271 91 318 1.71e-15 77.4
MS.gene24766.t1 MTR_2g098920 46.753 77 40 1 54 130 80 155 8.16e-15 74.3
MS.gene24766.t1 MTR_7g446480 29.817 218 123 6 57 272 123 312 1.60e-12 68.2
MS.gene24766.t1 MTR_7g446510 32.168 143 94 2 133 273 187 328 2.25e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24766.t1 AT4G38180 35.969 392 215 6 42 398 58 448 1.57e-76 253
MS.gene24766.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene24766.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene24766.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene24766.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene24766.t1 AT4G15090 29.412 374 235 3 50 394 47 420 1.08e-53 191
MS.gene24766.t1 AT3G22170 30.105 382 238 8 49 403 59 438 1.74e-50 182
MS.gene24766.t1 AT3G22170 30.105 382 238 8 49 403 59 438 1.74e-50 182
MS.gene24766.t1 AT1G76320 31.383 376 208 9 58 398 1 361 2.08e-49 177
MS.gene24766.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.18e-49 177
MS.gene24766.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.18e-49 177
MS.gene24766.t1 AT1G76320 31.383 376 208 9 58 398 1 361 4.28e-49 177
MS.gene24766.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene24766.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene24766.t1 AT3G06250 30.812 357 220 6 54 403 190 526 7.64e-49 177
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 4.50e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 1 332 4.64e-44 163
MS.gene24766.t1 AT5G18960 30.084 359 221 8 54 402 211 549 5.28e-44 163
MS.gene24766.t1 AT5G18960 30.084 359 221 8 54 402 211 549 5.28e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 1 332 5.48e-44 163
MS.gene24766.t1 AT2G27110 29.539 369 224 7 54 403 49 400 5.60e-44 164
MS.gene24766.t1 AT2G27110 29.539 369 224 7 54 403 49 400 5.60e-44 164
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 5.62e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 5.62e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene24766.t1 AT2G32250 29.060 351 225 7 58 403 42 373 6.18e-44 163
MS.gene24766.t1 AT1G10240 27.711 332 202 5 45 340 39 368 2.54e-40 152
MS.gene24766.t1 AT1G10240 27.711 332 202 5 45 340 39 368 2.54e-40 152
MS.gene24766.t1 AT2G27110 34.826 201 130 1 204 403 55 255 2.85e-38 146
MS.gene24766.t1 AT5G28530 25.829 422 251 12 35 399 37 453 5.81e-36 140
MS.gene24766.t1 AT5G28530 25.829 422 251 12 35 399 37 453 6.22e-36 139
MS.gene24766.t1 AT5G28530 25.829 422 251 12 35 399 37 453 6.22e-36 139
MS.gene24766.t1 AT1G80010 27.806 392 227 7 54 402 95 473 4.18e-35 137
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 40 390 1.57e-33 133
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.63e-33 133
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.80e-33 132
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 26 376 1.80e-33 132
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 26 376 2.02e-33 132
MS.gene24766.t1 AT4G19990 26.849 365 232 6 59 402 26 376 2.02e-33 132
MS.gene24766.t1 AT4G38170 34.158 202 127 3 204 403 21 218 1.21e-32 129
MS.gene24766.t1 AT1G52520 28.117 377 234 9 53 403 84 449 1.10e-29 121
MS.gene24766.t1 AT4G19990 26.911 327 208 7 85 402 15 319 1.17e-25 109
MS.gene24766.t1 AT3G59470 49.351 77 38 1 54 130 70 145 6.29e-15 74.7
MS.gene24766.t1 AT3G59470 49.351 77 38 1 54 130 70 145 6.29e-15 74.7
MS.gene24766.t1 AT3G59470 49.351 77 38 1 54 130 82 157 7.89e-15 74.3

Find 71 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGTTTCTTGGCTATT+TGG 0.127787 8.4:+10038865 None:intergenic
ATAAACGATTATGGATATTT+TGG 0.203454 8.4:-10038187 MS.gene24766:CDS
AGCAAATAACAAATATCTTT+TGG 0.204370 8.4:-10038225 MS.gene24766:CDS
TTGAAATTGATGGCTCATTA+AGG 0.253482 8.4:+10038938 None:intergenic
AGAATTTCCTTCGAACTAAA+AGG 0.257081 8.4:-10038351 MS.gene24766:CDS
TGTTGAAGGTGTAGAGAAAT+TGG 0.264261 8.4:-10038914 MS.gene24766:CDS
AGCAGAAATGGGAGCTCTTT+TGG 0.284940 8.4:+10037849 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.306820 8.4:-10038757 MS.gene24766:CDS
GTTATGCCTCAAACATTTCA+TGG 0.308775 8.4:-10037926 MS.gene24766:CDS
TAGTTCGAAGGAAATTCTTA+TGG 0.319083 8.4:+10038356 None:intergenic
TATAATCTACAAAAGTTTCT+TGG 0.325632 8.4:+10038857 None:intergenic
CCTTCAACAATTGAAATTGA+TGG 0.337251 8.4:+10038928 None:intergenic
GCACAGATGATAAACGATTA+TGG 0.341323 8.4:-10038196 MS.gene24766:CDS
AATGAGTATAGCAGGAGAAT+TGG 0.360693 8.4:-10038781 MS.gene24766:CDS
TGGCAAAATACTTTCATGAA+TGG 0.373730 8.4:+10038885 None:intergenic
CTTCAAAATCCGAGCAGAAA+TGG 0.375608 8.4:+10037837 None:intergenic
ACGTGCTTTACACCCAGTTC+TGG 0.377947 8.4:+10038621 None:intergenic
AAACAATTCCTTCCTTTCAA+TGG 0.386086 8.4:-10038042 MS.gene24766:CDS
CGACCATTGGGAGTATTTGT+TGG 0.391913 8.4:-10038118 MS.gene24766:CDS
GTCTATTCCACCAACTTGCT+TGG 0.399516 8.4:+10038402 None:intergenic
ATAGGTGGTTCACATGCCTT+AGG 0.401174 8.4:+10037873 None:intergenic
TACAACATACAAGACAAATA+AGG 0.410215 8.4:-10038146 MS.gene24766:CDS
AAAATCCTTTGGCTTTAATC+CGG 0.414261 8.4:+10038438 None:intergenic
ATACTCATTATAAAATTCAT+AGG 0.433466 8.4:+10038795 None:intergenic
TTCAAAATCCGAGCAGAAAT+GGG 0.435563 8.4:+10037838 None:intergenic
ACATACTCATGAAAATCCTT+TGG 0.439521 8.4:+10038427 None:intergenic
TCTAGAGCAGAAACCAGAAC+TGG 0.439558 8.4:-10038634 MS.gene24766:CDS
TTATACACCACACTTGGAAA+TGG 0.441214 8.4:-10038839 MS.gene24766:CDS
TATAGCAGGAGAATTGGATT+TGG 0.445248 8.4:-10038775 MS.gene24766:CDS
ACCACCTCTTTGTCATTCCA+CGG 0.452949 8.4:-10039134 MS.gene24766:CDS
CCATCAATTTCAATTGTTGA+AGG 0.458479 8.4:-10038928 MS.gene24766:CDS
AGGTGGTGGACGGCCAGAAT+TGG 0.466416 8.4:+10039150 None:intergenic
AAGATGGAGAAAACCAATTC+TGG 0.469862 8.4:-10039163 MS.gene24766:CDS
TCAAATAACCATTGAAAGGA+AGG 0.471148 8.4:+10038034 None:intergenic
TGAAAGTCATAAAAGAAAGA+AGG 0.477032 8.4:+10038262 None:intergenic
CATTTCATGGACTATGCACT+TGG 0.490965 8.4:-10037913 MS.gene24766:CDS
AAGATTCTCGTGCTTTAAAG+AGG 0.497851 8.4:-10038698 MS.gene24766:CDS
GTTGGTGGAATAGACATAGT+TGG 0.498391 8.4:-10038394 MS.gene24766:CDS
AATAAGGATTATCGACCATT+GGG 0.502732 8.4:-10038130 MS.gene24766:CDS
AAATAAGGATTATCGACCAT+TGG 0.506629 8.4:-10038131 MS.gene24766:CDS
ATAATGTTTCTGATGATTCG+TGG 0.513389 8.4:-10037748 MS.gene24766:CDS
CATAGTCCATGAAATGTTTG+AGG 0.517904 8.4:+10037920 None:intergenic
TGTAGATTATACACCACACT+TGG 0.533801 8.4:-10038845 MS.gene24766:CDS
TCACTGAGGTATGGTGAAGT+AGG 0.535157 8.4:-10038322 MS.gene24766:CDS
AAGATGAATTTCTGAACGCA+TGG 0.536411 8.4:-10037790 MS.gene24766:CDS
ATTGTGTTGGCTGATGAATC+CGG 0.546006 8.4:-10038457 MS.gene24766:CDS
AGGAATCATTCACTGAGGTA+TGG 0.556258 8.4:-10038331 MS.gene24766:CDS
TAGGTGGTTCACATGCCTTA+GGG 0.559416 8.4:+10037874 None:intergenic
AACAGATCAAAATGCAGCAA+TGG 0.565858 8.4:-10037966 MS.gene24766:CDS
GGAAATGGAGTTTGAATCTG+AGG 0.566587 8.4:-10038824 MS.gene24766:CDS
CCACCTCTTTGTCATTCCAC+GGG 0.567560 8.4:-10039133 MS.gene24766:intron
GCATTATTGATGTATTTCAA+AGG 0.569965 8.4:-10038298 MS.gene24766:CDS
AAAGAGCTCCCATTTCTGCT+CGG 0.571791 8.4:-10037846 MS.gene24766:CDS
TCAAACTCCATTTCCAAGTG+TGG 0.576119 8.4:+10038832 None:intergenic
AGTTTCAAATAACCATTGAA+AGG 0.585078 8.4:+10038030 None:intergenic
TCAAAATGCAGCAATGGCAA+AGG 0.593305 8.4:-10037960 MS.gene24766:CDS
AGATTCTCGTGCTTTAAAGA+GGG 0.598984 8.4:-10038697 MS.gene24766:CDS
GTGGAATGACAAAGAGGTGG+TGG 0.601159 8.4:+10039136 None:intergenic
ACAAGCATCACAAATTGTGT+TGG 0.607468 8.4:-10038470 MS.gene24766:CDS
TAGACATAGTTGGTTATACA+AGG 0.611692 8.4:-10038384 MS.gene24766:CDS
TGCTTTAAAGAGGGAAAGCG+AGG 0.618222 8.4:-10038688 MS.gene24766:CDS
TATGTGTCCAAGCAAGTTGG+TGG 0.620761 8.4:-10038409 MS.gene24766:CDS
AGTCCAACAAATACTCCCAA+TGG 0.630456 8.4:+10038115 None:intergenic
CTAGAGCAGAAACCAGAACT+GGG 0.631153 8.4:-10038633 MS.gene24766:CDS
ATATAAGAGAAAATGCCCTA+AGG 0.636935 8.4:-10037889 MS.gene24766:CDS
TGAATCCGGATTAAAGCCAA+AGG 0.646687 8.4:-10038443 MS.gene24766:CDS
AATGACAAAGAGGTGGTGGA+CGG 0.652235 8.4:+10039140 None:intergenic
TTACCCGTGGAATGACAAAG+AGG 0.668554 8.4:+10039130 None:intergenic
CCCGTGGAATGACAAAGAGG+TGG 0.685949 8.4:+10039133 None:intergenic
GAGTATGTGTCCAAGCAAGT+TGG 0.694904 8.4:-10038412 MS.gene24766:CDS
CTAAAAGGAATCATTCACTG+AGG 0.744388 8.4:-10038336 MS.gene24766:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTCATTATAAAATTCAT+AGG + chr8.4:10038083-10038102 None:intergenic 15.0%
!! TTTGTAGTATTAATTAAAAG+AGG + chr8.4:10037853-10037872 None:intergenic 15.0%
!! ATTTCACTTGATTGAAAAAT+TGG - chr8.4:10038283-10038302 MS.gene24766:CDS 20.0%
!! TATAATCTACAAAAGTTTCT+TGG + chr8.4:10038021-10038040 None:intergenic 20.0%
!! TTGAAAAATTGGAAAATACA+AGG - chr8.4:10038294-10038313 MS.gene24766:CDS 20.0%
!!! AATAAGTATTTTGTTAAACC+AGG + chr8.4:10037795-10037814 None:intergenic 20.0%
!!! AATTTTATAATGAGTATAGC+AGG - chr8.4:10038086-10038105 MS.gene24766:CDS 20.0%
!!! AGCAAATAACAAATATCTTT+TGG - chr8.4:10038650-10038669 MS.gene24766:CDS 20.0%
!!! ATAAACGATTATGGATATTT+TGG - chr8.4:10038688-10038707 MS.gene24766:CDS 20.0%
!!! GCAAATAACAAATATCTTTT+GGG - chr8.4:10038651-10038670 MS.gene24766:CDS 20.0%
!!! TTTCTTTTATGACTTTCAAA+TGG - chr8.4:10038618-10038637 MS.gene24766:intron 20.0%
! AGTTTCAAATAACCATTGAA+AGG + chr8.4:10038848-10038867 None:intergenic 25.0%
! GCATTATTGATGTATTTCAA+AGG - chr8.4:10038577-10038596 MS.gene24766:intron 25.0%
! GTAGTATTAATTAAAAGAGG+AGG + chr8.4:10037850-10037869 None:intergenic 25.0%
! TACAACATACAAGACAAATA+AGG - chr8.4:10038729-10038748 MS.gene24766:CDS 25.0%
! TGAAAGTCATAAAAGAAAGA+AGG + chr8.4:10038616-10038635 None:intergenic 25.0%
!! AATAACAAATATCTTTTGGG+CGG - chr8.4:10038654-10038673 MS.gene24766:CDS 25.0%
AAACAATTCCTTCCTTTCAA+TGG - chr8.4:10038833-10038852 MS.gene24766:CDS 30.0%
AAATAAGGATTATCGACCAT+TGG - chr8.4:10038744-10038763 MS.gene24766:CDS 30.0%
AATAAGGATTATCGACCATT+GGG - chr8.4:10038745-10038764 MS.gene24766:CDS 30.0%
ACAAAAGTTTCTTGGCTATT+TGG + chr8.4:10038013-10038032 None:intergenic 30.0%
ACATACTCATGAAAATCCTT+TGG + chr8.4:10038451-10038470 None:intergenic 30.0%
AGAATTTCCTTCGAACTAAA+AGG - chr8.4:10038524-10038543 MS.gene24766:intron 30.0%
ATATAAGAGAAAATGCCCTA+AGG - chr8.4:10038986-10039005 MS.gene24766:intron 30.0%
CACTCATTATTATTGAAACC+TGG - chr8.4:10037774-10037793 MS.gene24766:CDS 30.0%
CCATCAATTTCAATTGTTGA+AGG - chr8.4:10037947-10037966 MS.gene24766:CDS 30.0%
CCTTCAACAATTGAAATTGA+TGG + chr8.4:10037950-10037969 None:intergenic 30.0%
GGCAATAAAAGCAAAAAAGA+CGG - chr8.4:10038139-10038158 MS.gene24766:CDS 30.0%
TAGACATAGTTGGTTATACA+AGG - chr8.4:10038491-10038510 MS.gene24766:CDS 30.0%
TAGTTCGAAGGAAATTCTTA+TGG + chr8.4:10038522-10038541 None:intergenic 30.0%
TCAAATAACCATTGAAAGGA+AGG + chr8.4:10038844-10038863 None:intergenic 30.0%
TGGCAAAATACTTTCATGAA+TGG + chr8.4:10037993-10038012 None:intergenic 30.0%
TGGGAAAAATATTGAGTCAA+CGG + chr8.4:10037912-10037931 None:intergenic 30.0%
! ATAATGTTTCTGATGATTCG+TGG - chr8.4:10039127-10039146 MS.gene24766:intron 30.0%
! GAAACTTTTCTCAAAGCAAT+GGG - chr8.4:10038862-10038881 MS.gene24766:CDS 30.0%
! TGAAACTTTTCTCAAAGCAA+TGG - chr8.4:10038861-10038880 MS.gene24766:CDS 30.0%
! TGATCTGTTAACATGGTTTT+TGG + chr8.4:10038898-10038917 None:intergenic 30.0%
! TTGAAATTGATGGCTCATTA+AGG + chr8.4:10037940-10037959 None:intergenic 30.0%
!! AAAATCCTTTGGCTTTAATC+CGG + chr8.4:10038440-10038459 None:intergenic 30.0%
!! TGCATTTTGATCTGTTAACA+TGG + chr8.4:10038905-10038924 None:intergenic 30.0%
!!! AATGATTCCTTTTAGTTCGA+AGG + chr8.4:10038534-10038553 None:intergenic 30.0%
!!! TCAGACAAACTGTTGTTTTT+GGG - chr8.4:10038791-10038810 MS.gene24766:CDS 30.0%
!!! TTCAGACAAACTGTTGTTTT+TGG - chr8.4:10038790-10038809 MS.gene24766:CDS 30.0%
AACAGATCAAAATGCAGCAA+TGG - chr8.4:10038909-10038928 MS.gene24766:CDS 35.0%
AAGATGAATTTCTGAACGCA+TGG - chr8.4:10039085-10039104 MS.gene24766:intron 35.0%
AATGAGTATAGCAGGAGAAT+TGG - chr8.4:10038094-10038113 MS.gene24766:CDS 35.0%
ACAAGCATCACAAATTGTGT+TGG - chr8.4:10038405-10038424 MS.gene24766:CDS 35.0%
CATAGTCCATGAAATGTTTG+AGG + chr8.4:10038958-10038977 None:intergenic 35.0%
CTAAAAGGAATCATTCACTG+AGG - chr8.4:10038539-10038558 MS.gene24766:intron 35.0%
GCACAGATGATAAACGATTA+TGG - chr8.4:10038679-10038698 MS.gene24766:CDS 35.0%
GTTATGCCTCAAACATTTCA+TGG - chr8.4:10038949-10038968 MS.gene24766:intron 35.0%
TATAGCAGGAGAATTGGATT+TGG - chr8.4:10038100-10038119 MS.gene24766:CDS 35.0%
TGTAGATTATACACCACACT+TGG - chr8.4:10038030-10038049 MS.gene24766:CDS 35.0%
TTATACACCACACTTGGAAA+TGG - chr8.4:10038036-10038055 MS.gene24766:CDS 35.0%
TTCAAAATCCGAGCAGAAAT+GGG + chr8.4:10039040-10039059 None:intergenic 35.0%
TTTGGTATTCGTCGAGAATA+TGG - chr8.4:10038118-10038137 MS.gene24766:CDS 35.0%
! TGTTGAAGGTGTAGAGAAAT+TGG - chr8.4:10037961-10037980 MS.gene24766:CDS 35.0%
!! AAGATTCTCGTGCTTTAAAG+AGG - chr8.4:10038177-10038196 MS.gene24766:CDS 35.0%
!! AGATTCTCGTGCTTTAAAGA+GGG - chr8.4:10038178-10038197 MS.gene24766:CDS 35.0%
!! GTTGACTCAATATTTTTCCC+AGG - chr8.4:10037911-10037930 MS.gene24766:CDS 35.0%
!!! CAGACAAACTGTTGTTTTTG+GGG - chr8.4:10038792-10038811 MS.gene24766:CDS 35.0%
!!! GCATTCAATTTTTCGAGTGA+AGG - chr8.4:10039152-10039171 MS.gene24766:CDS 35.0%
AGGAATCATTCACTGAGGTA+TGG - chr8.4:10038544-10038563 MS.gene24766:intron 40.0%
AGTCCAACAAATACTCCCAA+TGG + chr8.4:10038763-10038782 None:intergenic 40.0%
ATGAGTGAATTTCTTACCCG+TGG + chr8.4:10037761-10037780 None:intergenic 40.0%
ATGGCTCATTAAGGTTTCCT+GGG + chr8.4:10037931-10037950 None:intergenic 40.0%
CTTCAAAATCCGAGCAGAAA+TGG + chr8.4:10039041-10039060 None:intergenic 40.0%
GGAAATGGAGTTTGAATCTG+AGG - chr8.4:10038051-10038070 MS.gene24766:CDS 40.0%
TCAAAATGCAGCAATGGCAA+AGG - chr8.4:10038915-10038934 MS.gene24766:CDS 40.0%
TCAAACTCCATTTCCAAGTG+TGG + chr8.4:10038046-10038065 None:intergenic 40.0%
TGAATCCGGATTAAAGCCAA+AGG - chr8.4:10038432-10038451 MS.gene24766:CDS 40.0%
! AATGGGAGCTCTTTTGGTAT+AGG + chr8.4:10039023-10039042 None:intergenic 40.0%
! ACTTTTCTCAAAGCAATGGG+TGG - chr8.4:10038865-10038884 MS.gene24766:CDS 40.0%
! CATTTCATGGACTATGCACT+TGG - chr8.4:10038962-10038981 MS.gene24766:intron 40.0%
! CTCTAGACTCTTTTGTCAAG+TGG + chr8.4:10038228-10038247 None:intergenic 40.0%
! GTTGGTGGAATAGACATAGT+TGG - chr8.4:10038481-10038500 MS.gene24766:CDS 40.0%
!! ATTGTGTTGGCTGATGAATC+CGG - chr8.4:10038418-10038437 MS.gene24766:CDS 40.0%
AAAGAGCTCCCATTTCTGCT+CGG - chr8.4:10039029-10039048 MS.gene24766:intron 45.0%
AACTGGGTGTAAAGCACGTA+TGG - chr8.4:10038258-10038277 MS.gene24766:CDS 45.0%
AATCACCTTCTTCAACCACC+AGG - chr8.4:10038340-10038359 MS.gene24766:CDS 45.0%
ACCACCTCTTTGTCATTCCA+CGG - chr8.4:10037741-10037760 MS.gene24766:CDS 45.0%
ATAGGTGGTTCACATGCCTT+AGG + chr8.4:10039005-10039024 None:intergenic 45.0%
ATCACCTTCTTCAACCACCA+GGG - chr8.4:10038341-10038360 MS.gene24766:CDS 45.0%
CTAGAGCAGAAACCAGAACT+GGG - chr8.4:10038242-10038261 MS.gene24766:CDS 45.0%
GAGTATGTGTCCAAGCAAGT+TGG - chr8.4:10038463-10038482 MS.gene24766:CDS 45.0%
GATGGCTCATTAAGGTTTCC+TGG + chr8.4:10037932-10037951 None:intergenic 45.0%
TAGGTGGTTCACATGCCTTA+GGG + chr8.4:10039004-10039023 None:intergenic 45.0%
TCACTGAGGTATGGTGAAGT+AGG - chr8.4:10038553-10038572 MS.gene24766:intron 45.0%
TTACCCGTGGAATGACAAAG+AGG + chr8.4:10037748-10037767 None:intergenic 45.0%
! AGCAGAAATGGGAGCTCTTT+TGG + chr8.4:10039029-10039048 None:intergenic 45.0%
! GTCTATTCCACCAACTTGCT+TGG + chr8.4:10038476-10038495 None:intergenic 45.0%
! TATGTGTCCAAGCAAGTTGG+TGG - chr8.4:10038466-10038485 MS.gene24766:CDS 45.0%
! TCTAGAGCAGAAACCAGAAC+TGG - chr8.4:10038241-10038260 MS.gene24766:CDS 45.0%
!! AATGACAAAGAGGTGGTGGA+CGG + chr8.4:10037738-10037757 None:intergenic 45.0%
!! CGACCATTGGGAGTATTTGT+TGG - chr8.4:10038757-10038776 MS.gene24766:CDS 45.0%
!! TGCTTTAAAGAGGGAAAGCG+AGG - chr8.4:10038187-10038206 MS.gene24766:CDS 45.0%
ACGTGCTTTACACCCAGTTC+TGG + chr8.4:10038257-10038276 None:intergenic 50.0%
ATCATATGAGCGTACCCTGG+TGG + chr8.4:10038358-10038377 None:intergenic 50.0%
CCACCTCTTTGTCATTCCAC+GGG - chr8.4:10037742-10037761 MS.gene24766:CDS 50.0%
CGAATCATATGAGCGTACCC+TGG + chr8.4:10038361-10038380 None:intergenic 50.0%
GTGGAATGACAAAGAGGTGG+TGG + chr8.4:10037742-10037761 None:intergenic 50.0%
! GGGAGCTCTTTTGGTATAGG+TGG + chr8.4:10039020-10039039 None:intergenic 50.0%
CCCGTGGAATGACAAAGAGG+TGG + chr8.4:10037745-10037764 None:intergenic 55.0%
CGTACCCTGGTGGTTGAAGA+AGG + chr8.4:10038348-10038367 None:intergenic 55.0%
!! AGGTGGTGGACGGCCAGAAT+TGG + chr8.4:10037728-10037747 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 10037715 10039182 10037715 ID=MS.gene24766
chr8.4 mRNA 10037715 10039182 10037715 ID=MS.gene24766.t1;Parent=MS.gene24766
chr8.4 exon 10039134 10039182 10039134 ID=MS.gene24766.t1.exon1;Parent=MS.gene24766.t1
chr8.4 CDS 10039134 10039182 10039134 ID=cds.MS.gene24766.t1;Parent=MS.gene24766.t1
chr8.4 exon 10038623 10038964 10038623 ID=MS.gene24766.t1.exon2;Parent=MS.gene24766.t1
chr8.4 CDS 10038623 10038964 10038623 ID=cds.MS.gene24766.t1;Parent=MS.gene24766.t1
chr8.4 exon 10037715 10038535 10037715 ID=MS.gene24766.t1.exon3;Parent=MS.gene24766.t1
chr8.4 CDS 10037715 10038535 10037715 ID=cds.MS.gene24766.t1;Parent=MS.gene24766.t1
Gene Sequence

>MS.gene24766

ATGGAGAAAACCAATTCTGGCCGTCCACCACCTCTTTGTCATTCCACGGGTAAGAAATTCACTCATTATTATTGAAACCTGGTTTAACAAAATACTTATTTCTCATTCTTTGATCACGTTTCTTGAAAAAATCCTCCTCTTTTAATTAATACTACAAAATTGCATTTGATTTTACTTGTTGTTTTTTTCGTTAACCGTTGACTCAATATTTTTCCCAGGAAACCTTAATGAGCCATCAATTTCAATTGTTGAAGGTGTAGAGAAATTGGTTAGTTCCATTCATGAAAGTATTTTGCCAAATAGCCAAGAAACTTTTGTAGATTATACACCACACTTGGAAATGGAGTTTGAATCTGAGGCAGCAGCCTATGAATTTTATAATGAGTATAGCAGGAGAATTGGATTTGGTATTCGTCGAGAATATGGCAATAAAAGCAAAAAAGACGGAATTCTGACTTCAAGAAGATTCTCGTGCTTTAAAGAGGGAAAGCGAGGTGATGACAAGCGAGACCACTTGACAAAAGAGTCTAGAGCAGAAACCAGAACTGGGTGTAAAGCACGTATGGTTATTTCACTTGATTGAAAAATTGGAAAATACAAGGTTGTCGACTTTGTATTTGAACATAATCACCTTCTTCAACCACCAGGGTACGCTCATATGATTCGCTCTCATCGACGCATATCTGAGTCACAAGCATCACAAATTGTGTTGGCTGATGAATCCGGATTAAAGCCAAAGGATTTTCATGAGTATGTGTCCAAGCAAGTTGGTGGAATAGACATAGTTGGTTATACAAGGCAAGACCATAAGAATTTCCTTCGAACTAAAAGGAATCATTCACTGAGGTATGGTGAAGTAGGTGCATTATTGATGTATTTCAAAGGACAAAGTGAAAATCCTTCTTTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATCTTTTGGGCGGATGCACAGATGATAAACGATTATGGATATTTTGGTGATGTCATCACTTTTGATACAACATACAAGACAAATAAGGATTATCGACCATTGGGAGTATTTGTTGGACTGAATAACTTCAGACAAACTGTTGTTTTTGGGGCAACATTGCTGTATGATGAAACAATTCCTTCCTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCAAAAACCATGTTAACAGATCAAAATGCAGCAATGGCAAAGGCTATTTCTCTAGTTATGCCTCAAACATTTCATGGACTATGCACTTGGCATATAAGAGAAAATGCCCTAAGGCATGTGAACCACCTATACCAAAAGAGCTCCCATTTCTGCTCGGATTTTGAAGCATGTATTGATCTACATGAAGAAGAAGATGAATTTCTGAACGCATGGAATGTTTTACTTCTTGAGCATAATGTTTCTGATGATTCGTGGCTGCATTCAATTTTTCGAGTGAAGGAAAAATAG
Protein sequence

>MS.gene24766.t1

MEKTNSGRPPPLCHSTGNLNEPSISIVEGVEKLVSSIHESILPNSQETFVDYTPHLEMEFESEAAAYEFYNEYSRRIGFGIRREYGNKSKKDGILTSRRFSCFKEGKRGDDKRDHLTKESRAETRTGCKARYAHMIRSHRRISESQASQIVLADESGLKPKDFHEYVSKQVGGIDIVGYTRQDHKNFLRTKRNHSLRYGEVGALLMYFKGQSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNFRQTVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTMLTDQNAAMAKAISLVMPQTFHGLCTWHIRENALRHVNHLYQKSSHFCSDFEACIDLHEEEDEFLNAWNVLLLEHNVSDDSWLHSIFRVKEK