AlfalfaGEDB | MS.gene24774

M. sativa cultivar XinJiangDaYe / MS.gene24774

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02309.19 PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24774.t1	XP_003609970.1	96.7	1106	26	1	38	1133	15	1120	0.00E+00	1517.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24774.t1	P93022	73.8	1162	226	15	38	1133	16	1164	2.0e-307	1056.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24774.t1	G7JS69	96.7	1106	26	1	38	1133	15	1120	0.0e+00	1517.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24774.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24774.t1	MTR_4g124900	94.439	1115	34	2	38	1133	15	1120	0.0	1875
MS.gene24774.t1	MTR_4g124900	92.466	1115	33	3	38	1133	15	1097	0.0	1815
MS.gene24774.t1	MTR_2g043250	76.667	630	105	8	38	652	15	617	0.0	881
MS.gene24774.t1	MTR_8g101360	49.697	1157	440	39	31	1118	13	1096	0.0	825
MS.gene24774.t1	MTR_2g018690	60.412	485	163	12	38	510	15	482	0.0	553
MS.gene24774.t1	MTR_2g018690	38.075	239	111	7	881	1098	645	867	7.90e-33	138
MS.gene24774.t1	MTR_5g076270	66.019	412	129	8	38	443	16	422	1.04e-177	543
MS.gene24774.t1	MTR_5g076270	50.459	109	54	0	986	1094	695	803	3.71e-29	126
MS.gene24774.t1	MTR_3g064050	65.366	410	131	8	40	443	20	424	1.81e-176	540
MS.gene24774.t1	MTR_3g064050	53.333	105	49	0	990	1094	707	811	8.50e-29	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24774.t1	AT1G19220	82.875	473	81	0	38	510	15	487	0.0	819
MS.gene24774.t1	AT5G20730	81.781	483	81	4	38	513	16	498	0.0	802
MS.gene24774.t1	AT5G20730	81.612	484	81	5	38	513	16	499	0.0	797
MS.gene24774.t1	AT5G20730	81.612	484	81	5	38	513	16	499	0.0	796
MS.gene24774.t1	AT1G30330	67.961	412	120	8	38	443	17	422	0.0	554
MS.gene24774.t1	AT1G30330	40.212	189	100	3	910	1098	713	888	5.73e-32	135
MS.gene24774.t1	AT1G30330	67.961	412	120	8	38	443	17	422	0.0	554
MS.gene24774.t1	AT1G30330	40.212	189	100	3	910	1098	713	888	5.73e-32	135
MS.gene24774.t1	AT1G30330	67.961	412	120	8	38	443	15	420	0.0	554
MS.gene24774.t1	AT1G30330	40.212	189	100	3	910	1098	711	886	6.01e-32	135

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Find 253 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTCGGTAGGTTGA+CGG	0.504207	8.2:+8024175	None:intergenic
AAACTGTTGATTGTGATGTT+GGG	0.537797	8.2:+8021400	None:intergenic
AAAGATATTGTCATCTGCTG+AGG	0.613178	8.2:-8020180	MS.gene24774:CDS
AAATTGTGAGTCATGTGGTA+TGG	0.550017	8.2:+8021729	None:intergenic
AACACCTTCTTCTAGGCTTG+AGG	0.569429	8.2:-8023313	MS.gene24774:CDS
AACTTCCAGTCAGTCCTTTG+AGG	0.394995	8.2:+8020373	None:intergenic
AAGAGACACTTGAGTGTACA+TGG	0.494633	8.2:+8023013	None:intergenic
AAGAGACATCTGTTGACTAC+TGG	0.463007	8.2:-8023529	MS.gene24774:CDS
AAGAGAGCTATGCCCTGGCT+TGG	0.485507	8.2:-8022438	MS.gene24774:CDS
AAGATCCCTCCTATTGTAGT+GGG	0.597245	8.2:+8021140	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATTCTCAAACTGAAG+AGG	+	chr8.2:8020672-8020691	None:intergenic	30.0%
AATAAGCTCATGAAGAAGTT+CGG	+	chr8.2:8022199-8022218	None:intergenic	30.0%
AATGGAATAACAAATTCGGA+GGG	+	chr8.2:8021964-8021983	None:intergenic	30.0%
ACAAATTCTCAAACTGAAGA+GGG	+	chr8.2:8020671-8020690	None:intergenic	30.0%
AGAAAACGGTCAATTTAACA+GGG	-	chr8.2:8021933-8021952	MS.gene24774:CDS	30.0%
AGACGATCAATTCAGAATTA+TGG	-	chr8.2:8020170-8020189	MS.gene24774:CDS	30.0%
ATAGTTACTCATCATTTGCT+TGG	+	chr8.2:8020740-8020759	None:intergenic	30.0%
ATGATTTAGCACGAATGTTT+GGG	-	chr8.2:8024597-8024616	MS.gene24774:CDS	30.0%
CATAGACAAGAAAAACCAAA+AGG	+	chr8.2:8021018-8021037	None:intergenic	30.0%
CATGAGTTCTCAAATGTAAA+AGG	-	chr8.2:8023961-8023980	MS.gene24774:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	8020049	8024987	8020049	ID=MS.gene24774
chr8.2	mRNA	8020049	8024987	8020049	ID=MS.gene24774.t1;Parent=MS.gene24774
chr8.2	exon	8024763	8024987	8024763	ID=MS.gene24774.t1.exon1;Parent=MS.gene24774.t1
chr8.2	CDS	8024763	8024987	8024763	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8024569	8024664	8024569	ID=MS.gene24774.t1.exon2;Parent=MS.gene24774.t1
chr8.2	CDS	8024569	8024664	8024569	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8024376	8024432	8024376	ID=MS.gene24774.t1.exon3;Parent=MS.gene24774.t1
chr8.2	CDS	8024376	8024432	8024376	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8024089	8024244	8024089	ID=MS.gene24774.t1.exon4;Parent=MS.gene24774.t1
chr8.2	CDS	8024089	8024244	8024089	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8023892	8023976	8023892	ID=MS.gene24774.t1.exon5;Parent=MS.gene24774.t1
chr8.2	CDS	8023892	8023976	8023892	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8023469	8023559	8023469	ID=MS.gene24774.t1.exon6;Parent=MS.gene24774.t1
chr8.2	CDS	8023469	8023559	8023469	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8023182	8023346	8023182	ID=MS.gene24774.t1.exon7;Parent=MS.gene24774.t1
chr8.2	CDS	8023182	8023346	8023182	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8022887	8023082	8022887	ID=MS.gene24774.t1.exon8;Parent=MS.gene24774.t1
chr8.2	CDS	8022887	8023082	8022887	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8022651	8022789	8022651	ID=MS.gene24774.t1.exon9;Parent=MS.gene24774.t1
chr8.2	CDS	8022651	8022789	8022651	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8021556	8022489	8021556	ID=MS.gene24774.t1.exon10;Parent=MS.gene24774.t1
chr8.2	CDS	8021556	8022489	8021556	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8020614	8021499	8020614	ID=MS.gene24774.t1.exon11;Parent=MS.gene24774.t1
chr8.2	CDS	8020614	8021499	8020614	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8020319	8020509	8020319	ID=MS.gene24774.t1.exon12;Parent=MS.gene24774.t1
chr8.2	CDS	8020319	8020509	8020319	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1
chr8.2	exon	8020049	8020229	8020049	ID=MS.gene24774.t1.exon13;Parent=MS.gene24774.t1
chr8.2	CDS	8020049	8020229	8020049	ID=cds.MS.gene24774.t1;Parent=MS.gene24774.t1

Gene Sequence

>MS.gene24774

ATGGCTTCTATAGTTAAGTCTTTATTCTTTCTGTCTAATCGTACGAATAAAGAGAAAGCATATCTGTATACGTCTGCTCAAAGGAGTAACATTATGTTTATTTTGACACTAGGGGAAAGGAAGACGATCAATTCAGAATTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCACCCGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTATGTTTCATAAGCGATGAATTCTATGAGCGTCATGTGATTCATATTTCTGTATTTTGGTTGCTGATGAAGTCTCCTTTGACTACTTTAACTTTCAGGTTGCGGCTTCCATGCAAAAACAGACCGACTTCATACCCAGTTACCCCAATCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGTAGGTGCATTTTCCGCTTGTGATGTGGCTGTTATGCAATAATGAAAACTTGTGAAGAAGAATTACTTATATACAGTTTATGATTTATATTCCATCAACTTGTGATTTATTGGTGTTTTTGTTTATTTTGGAGCAGGCTGATCCTGAAACTGACGAGGTCTACGCGCAAATGACACTTCAACCTGTAAACAAAGTAGGTTCCCTCTTCAGTTTGAGAATTTGTTATTGCGTCGCATGTTTAGTTCCTTACTTTTCTTTGACATCCTCTTCCAAGCAAATGATGAGTAACTATACAAAAGATTGTCTCATTTGTCTCTTCTGCAGTATGACAAGGACGCAATACTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACCGAATTCTTTTGCAAAACTCTAACTGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGTGTGTATACAACATTCTCATATCTCTTGATTCATTTTCGCAAAATTTGGTAGAGCTTTATCTGATCCCTTTTGGTTTTTCTTGTCTATGCTGACCATAAGTGTTTTGATAGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATCTGCATGACAATACATGGGCGTTTAGACATATTTATAGAGGTATTTCCACTTTTATTTTAGATATTCTTCATTCATTGCCATCTTACATTCATATATAATCATTAGTATATTGTATGCTTTATTGACGCACCTTTACATTCTATCTTTCTAAACCCTGTAGGTATATATTATCTTGTTATTGGTATGACAATGACATCACTTTTGTAAAAATGAAGCACATGCTAAAAATTGAGACTGTCCATACAGAAGAATTTTTTTTCAATAATCTTAGAACCGTCTTGTAAATGATTTGACCAATATACAAATATAAAGCTGTGTAATTTATGTGTTATGAAGTTTGAATGCTGAAATTGATTGAACATTGGCTACAGGGCAACCAAAGAGACATCTGTTGACTACTGGATGGAGTGTATTTATCAGCACAAAGAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGGTAAGATATATATATATATATATATATATATATATATATATATATATATATATATCTTGTGTTGGAATTTCAGAGAATTTTTAACCACAGTTTCTGAGCAAATTTTTGTTGATTACTTTTAGAGATGAAAAACAACACCTTCTTCTAGGCTTGAGGCGCGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATATCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCCGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGTACTATTTGGCATGTATGTGTATTATCATACATAATATGGAATAGCATCCATCGAAATATTTGTGACAGTCTCTTACAGAAAACGGTCAATTTAACAGGGCCAGCCCCTCCGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTGTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGTAGATACATGGGTACAGTTACAGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTATTATTAAAAGGTGTATTATAGTACTTGTTTTGATGTACTAATACCGAACTTCTTCATGAGCTTATTGGAGCAATTATTTTCGGACTATTTACAGGTTGGATGGGATGAATCGACAGCTGGTGAACGCCCAAGTAGAGTTTCGATTTGGGATATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTCAGGCAAAACTTCCCCGGCCACCCTGGCATGCCAGGTAGTAAGAGTTGCAGTCTTAATTAGTTAAGCTTTCATTGTGAAGTTCTTGCTATCATGTCATTGGTTCTCCAATAATTTCATTGTTCTTAGAATTAACGACCTGGCATTAAGAAAGTGAAATCAAGTCGCTTGTGTTAAATGTTTAGTCTTGTTTTGCAGATGACGGGTCCGATGTAGAAAATTCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAGTTTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAAAAATCAGTTTTCAGGTGCTCAATCAGGATGTTTCCCATCCATGCTCTCGTCTAATACTCTGCATGGTAATCTTAGCACCGACGACCCATCCAAATTATTAAGTTTCCAAGCTCCAGCCCTCTCTGCGCCAAATCTTCAATTTAACAAACCTAATTTACCCAATCAAATCAACCAATTGCAACAGTCCCCAACATCATGGCCTCAGCAACAACAACAGATACAGCAGCAGCAGCAGCAGCAGCTGCAGCAACAACAACAGCAACAGCAGCAGCTTCAGCAACAACAACAGCAACAGCAGCTGCAGTCATTGGCACAAATACCAATGAACCAGTTCCAGCAACAAAGGCAACAGCAGCTGCCTGAATCACAAAACCTGACACTGCTACAACAACAAATTACTCAGCAGCTACAGAAACAGCCACAGTCATCTCAACAGGCTATTATAAATAATGGTGTAGTTGCTTCTAAGCAGATTACAAATCAGTTTCAACAGCCGCAACCACTAGCTTACGCTCAGCTTCAGCAACAACAGCAGTTGCTCCAGGGAAGTATCCCACACCAGCAAAGTATCCAAACAGCAAGTAAGAATGCATTCCCACTGACATCCATACCACATGACTCACAATTTCATCAACAGATAGACCAGCAACCGAGTATCTTACAGAGACAGCAGCAACAGACACAATCACAACAATCTTCACTGCAGGTGCTTCAACAAAGCCAGCCACAGAGGATGCAACCAAATCTTTCAGCGACTCAAATGTCTCAACAAAACACCTCGGAGCAACAACTGCAGCTACAGTTTTTGCAAAAATTGCAGCAGCAGCAGCAGCACAACAACTTCTTTCGACGTCTAGCCCACTTTTGCAATCTCAGCTTCTGCAGCAACAAAATACTAACCAACAAAACCAGCAATTACCTCAGCTTCCTATATCCCAACATCACAATCAACAGTTTGGTAATAATGCATTTTCAACGGAGAAGCTTCTCAACAGCAACAATTTGTCTTCTTCATCTCTTATGCAATCACAACAGCTTTCTGTGAATCAAACCCGAAATACACAGAAGCCACTCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACATCGCCATCTACTAATAACTGCCAGATAACTCAACCAAACCTCCTGAAAAGAAATCAACAAGTACCCACTACAATAGGAGGGATCTTGGCAGTGGAGCCAACCAGTAATCTGATACAGGACCTTCAGAGTAAGTCTGACATGCATATCAAACATGAGTTCTCAAATGTAAAAGGATCTGACCAGCGAAAGTATAAAGGGACAACTACTGATCAACTGGAAGCTTCTTCTGGAACATCATACTGTCTGGATCCTGGCAACATTCAACAAAATTTGCCACTATCCAACTTCTGCATGGAAGGGGATGTCCAATCGAACCCTCGAAACAATCTTACGTTTGACTCTAATCTTGATGGTCTAATGTCTGATACTATGCTTTCAAGGGGTTTTGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACCGAACTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTGACAGACATGTCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTAATGATGCTTCTGGGGTTTTGAACAATGGCTTGCGAGCAAACCAAAATCAACGAATGCGAACATATACTAAGGTTTGTCATTCTACGACGACTGCAGATCTAATTTTTTAGCATTGCCTGTTATGTTTTAATTTATTCTTTAGATCATGTATTCAAATGCTATTCAAATTGTGTAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAACTCCGGTATGATTTAGCACGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAGTTAGTATACGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGATCCTTGGGAGTAAGTAGTCATTTCCTTAACTGTTTGTAGGCTACTGTTTCTGCAAATTTAGTTTGTTTTCTTGACCATCTACTTATAACCTCTTGCAGGGAATTTGTAAGTTGTGTTCAGAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGTTTGGATGGGGATTTAGGTAATGTTACAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA

Protein sequence

>MS.gene24774.t1

MASIVKSLFFLSNRTNKEKAYLYTSAQRSNIMFILTLGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQHLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSLVQWMSMQQKNQFSGAQSGCFPSMLSSNTLHGNLSTDDPSKLLSFQAPALSAPNLQFNKPNLPNQINQLQQSPTSWPQQQQQIQQQQQQQLQQQQQQQQQLQQQQQQQQLQSLAQIPMNQFQQQRQQQLPESQNLTLLQQQITQQLQKQPQSSQQAIINNGVVASKQITNQFQQPQPLAYAQLQQQQQLLQGSIPHQQSIQTASKNAFPLTSIPHDSQFHQQIDQQPSILQRQQQQTQSQQSSLQVLQQSQPQRMQPNLSATQMSQQNTSEQQLQLHPLLQSQLLQQQNTNQQNQQLPQLPISQHHNQQFGNNAFSTEKLLNSNNLSSSSLMQSQQLSVNQTRNTQKPLTITRVPSTLTDGEAPSCSTSPSTNNCQITQPNLLKRNQQVPTTIGGILAVEPTSNLIQDLQSKSDMHIKHEFSNVKGSDQRKYKGTTTDQLEASSGTSYCLDPGNIQQNLPLSNFCMEGDVQSNPRNNLTFDSNLDGLMSDTMLSRGFDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLTDMSFKPGCSNDVGINDASGVLNNGLRANQNQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGTDSGNAWRGQYDDNSAASFNR