Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24967.t1 | GAU35521.1 | 63.1 | 195 | 68 | 2 | 1 | 194 | 1 | 192 | 2.70E-62 | 248.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24967.t1 | Q9SZL8 | 33.8 | 231 | 144 | 5 | 4 | 226 | 35 | 264 | 4.0e-22 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24967.t1 | A0A2Z6MVW6 | 63.1 | 195 | 68 | 2 | 1 | 194 | 1 | 192 | 1.9e-62 | 248.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24967.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24967.t1 | MTR_7g446520 | 39.655 | 232 | 115 | 3 | 6 | 228 | 47 | 262 | 2.58e-47 | 160 |
| MS.gene24967.t1 | MTR_7g446480 | 49.138 | 116 | 59 | 0 | 113 | 228 | 140 | 255 | 5.18e-34 | 125 |
| MS.gene24967.t1 | MTR_7g028855 | 42.763 | 152 | 82 | 1 | 33 | 179 | 112 | 263 | 2.51e-32 | 123 |
| MS.gene24967.t1 | MTR_7g446510 | 48.276 | 116 | 60 | 0 | 113 | 228 | 155 | 270 | 3.18e-32 | 120 |
| MS.gene24967.t1 | MTR_8g035530 | 75.000 | 76 | 18 | 1 | 28 | 102 | 1 | 76 | 3.32e-32 | 113 |
| MS.gene24967.t1 | MTR_5g076070 | 27.861 | 201 | 138 | 3 | 38 | 233 | 50 | 248 | 6.85e-27 | 105 |
| MS.gene24967.t1 | MTR_1g070355 | 29.500 | 200 | 132 | 3 | 41 | 234 | 74 | 270 | 2.86e-24 | 101 |
| MS.gene24967.t1 | MTR_3g080590 | 52.874 | 87 | 41 | 0 | 5 | 91 | 69 | 155 | 4.08e-24 | 95.1 |
| MS.gene24967.t1 | MTR_6g022080 | 28.235 | 170 | 117 | 2 | 34 | 198 | 78 | 247 | 2.15e-21 | 90.1 |
| MS.gene24967.t1 | MTR_6g051425 | 26.368 | 201 | 139 | 3 | 40 | 232 | 16 | 215 | 8.28e-20 | 87.4 |
| MS.gene24967.t1 | MTR_0402s0040 | 29.651 | 172 | 116 | 3 | 45 | 212 | 30 | 200 | 1.07e-17 | 82.4 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 59 | 158 | 7.46e-14 | 69.3 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 59 | 158 | 7.48e-14 | 69.3 |
| MS.gene24967.t1 | MTR_2g098920 | 35.514 | 107 | 67 | 2 | 39 | 143 | 78 | 184 | 8.70e-14 | 69.7 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 77 | 176 | 1.09e-13 | 69.3 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 79 | 178 | 1.10e-13 | 69.3 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 79 | 178 | 1.18e-13 | 68.9 |
| MS.gene24967.t1 | MTR_4g067290 | 35.000 | 100 | 63 | 2 | 44 | 141 | 119 | 218 | 1.25e-13 | 69.7 |
| MS.gene24967.t1 | MTR_7g061980 | 33.028 | 109 | 67 | 2 | 44 | 148 | 13 | 119 | 5.78e-13 | 64.3 |
| MS.gene24967.t1 | MTR_5g015480 | 31.538 | 130 | 82 | 3 | 45 | 167 | 60 | 189 | 9.50e-13 | 66.6 |
| MS.gene24967.t1 | MTR_1g008290 | 28.467 | 137 | 87 | 3 | 81 | 217 | 1 | 126 | 1.20e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24967.t1 | AT4G38180 | 33.766 | 231 | 144 | 5 | 4 | 226 | 35 | 264 | 2.02e-25 | 105 |
| MS.gene24967.t1 | AT3G07500 | 35.526 | 152 | 84 | 6 | 16 | 157 | 3 | 150 | 1.53e-15 | 73.6 |
| MS.gene24967.t1 | AT3G59470 | 35.514 | 107 | 67 | 2 | 39 | 143 | 68 | 174 | 1.87e-13 | 68.6 |
| MS.gene24967.t1 | AT3G59470 | 35.514 | 107 | 67 | 2 | 39 | 143 | 68 | 174 | 1.87e-13 | 68.6 |
| MS.gene24967.t1 | AT3G59470 | 35.514 | 107 | 67 | 2 | 39 | 143 | 80 | 186 | 2.16e-13 | 68.6 |
| MS.gene24967.t1 | AT4G12850 | 37.255 | 102 | 62 | 2 | 39 | 139 | 9 | 109 | 1.92e-11 | 60.8 |
| MS.gene24967.t1 | AT5G18960 | 39.175 | 97 | 47 | 3 | 44 | 139 | 46 | 131 | 2.94e-11 | 63.5 |
| MS.gene24967.t1 | AT5G18960 | 39.175 | 97 | 47 | 3 | 44 | 139 | 46 | 131 | 2.94e-11 | 63.5 |
| MS.gene24967.t1 | AT4G12850 | 37.255 | 102 | 62 | 2 | 39 | 139 | 9 | 109 | 3.15e-11 | 60.1 |
| MS.gene24967.t1 | AT1G10240 | 27.711 | 166 | 111 | 5 | 44 | 200 | 51 | 216 | 6.73e-11 | 62.4 |
| MS.gene24967.t1 | AT1G10240 | 27.711 | 166 | 111 | 5 | 44 | 200 | 51 | 216 | 6.73e-11 | 62.4 |
Find 57 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATAAGTGGAGAGTTTC+TGG | 0.119642 | 4.1:+82426660 | MS.gene24967:CDS |
| TGTTAGAACCTGTCATATTT+TGG | 0.145212 | 4.1:+82426800 | MS.gene24967:CDS |
| TCACTCAATTGACAGTTCTT+AGG | 0.298570 | 4.1:-82426738 | None:intergenic |
| TGTGAAGAATCCAAAATTCT+TGG | 0.353566 | 4.1:-82427755 | None:intergenic |
| TGAAGAAGGAAAAGAGGATA+TGG | 0.353695 | 4.1:+82426356 | MS.gene24967:CDS |
| AGACTTAAATGGTGAAGATT+TGG | 0.353984 | 4.1:+82426311 | MS.gene24967:CDS |
| TGGATACTTACAAGAAGATT+AGG | 0.354642 | 4.1:+82426376 | MS.gene24967:CDS |
| TCCAACCCGTTATGCTCATT+TGG | 0.356553 | 4.1:+82426713 | MS.gene24967:CDS |
| TGCTGCGTTGAGTCATTTGC+AGG | 0.361206 | 4.1:+82426935 | MS.gene24967:CDS |
| GAAAGGAGGTCATGAGAGTC+TGG | 0.365097 | 4.1:+82426839 | MS.gene24967:CDS |
| TTCTTCACATTCTCAATTAG+TGG | 0.369061 | 4.1:+82427769 | MS.gene24967:CDS |
| GCAAACGATGGAGACTTAAA+TGG | 0.391188 | 4.1:+82426300 | MS.gene24967:CDS |
| TGCAGAACACTTAGTTTGAA+TGG | 0.398604 | 4.1:-82426610 | None:intergenic |
| TCTGATAAAGCCCTTGTTGA+TGG | 0.437123 | 4.1:+82426762 | MS.gene24967:CDS |
| TGTTACATTGCAGTTATTTG+TGG | 0.438912 | 4.1:+82427691 | MS.gene24967:intron |
| GAAGGAAAGGCAAGAATAGA+AGG | 0.450742 | 4.1:+82426900 | MS.gene24967:CDS |
| GGATACTTACAAGAAGATTA+GGG | 0.465987 | 4.1:+82426377 | MS.gene24967:CDS |
| CAAGAAGATTAGGGAATTGA+CGG | 0.467663 | 4.1:+82426386 | MS.gene24967:CDS |
| AGGAACCAAATGAGCATAAC+GGG | 0.471013 | 4.1:-82426718 | None:intergenic |
| AATGGTGTGTTTAATGAAGA+AGG | 0.477078 | 4.1:+82426342 | MS.gene24967:CDS |
| TAAATGTTGATACTAATAAG+TGG | 0.482914 | 4.1:+82426649 | MS.gene24967:CDS |
| GAAGATTTGGCCAGCGGTAA+TGG | 0.496494 | 4.1:+82426324 | MS.gene24967:CDS |
| GGATGATGATATAAGAGGAT+TGG | 0.496802 | 4.1:+82426407 | MS.gene24967:CDS |
| ATTTAAGTCTCCATCGTTTG+CGG | 0.497050 | 4.1:-82426298 | None:intergenic |
| TTGACGGATGATGATATAAG+AGG | 0.497315 | 4.1:+82426402 | MS.gene24967:CDS |
| GAAATCTATGCAGATTGTCA+TGG | 0.498853 | 4.1:+82426465 | MS.gene24967:CDS |
| AGGATTGGAATTTGATTCAG+AGG | 0.508865 | 4.1:+82426422 | MS.gene24967:CDS |
| GATGTAAACAAAGATGATGA+TGG | 0.508994 | 4.1:+82426507 | MS.gene24967:CDS |
| AGAAACAAAGTACATATTCG+AGG | 0.529955 | 4.1:+82426583 | MS.gene24967:CDS |
| TGCAGATTGTCATGGGTTTG+TGG | 0.531824 | 4.1:+82426473 | MS.gene24967:CDS |
| AAATCTATGCAGATTGTCAT+GGG | 0.533515 | 4.1:+82426466 | MS.gene24967:CDS |
| GAAAGGCAAGAATAGAAGGT+GGG | 0.534127 | 4.1:+82426904 | MS.gene24967:CDS |
| TAGGAACCAAATGAGCATAA+CGG | 0.549503 | 4.1:-82426719 | None:intergenic |
| CATAAAACCCAAAATATGAC+AGG | 0.552239 | 4.1:-82426808 | None:intergenic |
| AAAGGCAAGAATAGAAGGTG+GGG | 0.563747 | 4.1:+82426905 | MS.gene24967:CDS |
| ATTAAACACACCATTACCGC+TGG | 0.563951 | 4.1:-82426334 | None:intergenic |
| GTTTAATGAAGAAGGAAAAG+AGG | 0.567512 | 4.1:+82426350 | MS.gene24967:CDS |
| CTACTTATACAACGAAGGAA+AGG | 0.573802 | 4.1:+82426887 | MS.gene24967:CDS |
| ATTTAAATGTCCGCAAACGA+TGG | 0.575159 | 4.1:+82426288 | None:intergenic |
| AACGGGTTGGAGTTAACTCA+TGG | 0.579913 | 4.1:-82426701 | None:intergenic |
| ATGTAAACAAAGATGATGAT+GGG | 0.584402 | 4.1:+82426508 | MS.gene24967:CDS |
| GTTGATGGTCTTCACGCACA+CGG | 0.587234 | 4.1:+82426777 | MS.gene24967:CDS |
| AGTTAACTCATGGTTGTGTG+AGG | 0.591294 | 4.1:-82426691 | None:intergenic |
| ACCAAATGAGCATAACGGGT+TGG | 0.596668 | 4.1:-82426714 | None:intergenic |
| TCTATTAGTATGTAATAGAG+AGG | 0.600970 | 4.1:+82426545 | MS.gene24967:CDS |
| TTTATGATGGCTCAGAAAGG+AGG | 0.609928 | 4.1:+82426825 | MS.gene24967:CDS |
| AAAGGAGGTCATGAGAGTCT+GGG | 0.612373 | 4.1:+82426840 | MS.gene24967:CDS |
| TATAACTACTTATACAACGA+AGG | 0.619788 | 4.1:+82426882 | MS.gene24967:CDS |
| GTTAACTCATGGTTGTGTGA+GGG | 0.630795 | 4.1:-82426690 | None:intergenic |
| GTGCGTGAAGACCATCAACA+AGG | 0.635936 | 4.1:-82426773 | None:intergenic |
| AATGGTGAAGATTTGGCCAG+CGG | 0.651506 | 4.1:+82426318 | MS.gene24967:CDS |
| TTCAAACTAAGTGTTCTGCA+AGG | 0.661356 | 4.1:+82426613 | MS.gene24967:CDS |
| CTATTAGTATGTAATAGAGA+GGG | 0.662332 | 4.1:+82426546 | MS.gene24967:CDS |
| GGAAAGGCAAGAATAGAAGG+TGG | 0.664586 | 4.1:+82426903 | MS.gene24967:CDS |
| GAAATTACACGAAGGAAACG+TGG | 0.665727 | 4.1:+82427715 | MS.gene24967:CDS |
| TGCGTGAAGACCATCAACAA+GGG | 0.673392 | 4.1:-82426772 | None:intergenic |
| TTTGTGGAGAAATTACACGA+AGG | 0.709741 | 4.1:+82427707 | MS.gene24967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGAAAATTTATTTTGGT+CGG | + | chr4.1:82427016-82427035 | MS.gene24967:intron | 15.0% |
| !! | TAAATGTTGATACTAATAAG+TGG | + | chr4.1:82426649-82426668 | MS.gene24967:CDS | 20.0% |
| !!! | ATGAAATTTTCCAAGAATTT+TGG | + | chr4.1:82427745-82427764 | MS.gene24967:CDS | 20.0% |
| !!! | ATGAAATTTTCCAAGAATTT+TGG | - | chr4.1:82427764-82427745 | None:intergenic | 20.0% |
| !!! | GACGTTTAGAAAATTTATTT+TGG | + | chr4.1:82427012-82427031 | MS.gene24967:intron | 20.0% |
| ! | ATGTAAACAAAGATGATGAT+GGG | + | chr4.1:82426508-82426527 | MS.gene24967:CDS | 25.0% |
| ! | CATTAAATTCTTGTCACAAT+TGG | + | chr4.1:82427618-82427637 | MS.gene24967:intron | 25.0% |
| ! | CTATAAATTCTTGTCACAAT+TGG | - | chr4.1:82427513-82427532 | None:intergenic | 25.0% |
| ! | CTATTAGTATGTAATAGAGA+GGG | + | chr4.1:82426546-82426565 | MS.gene24967:CDS | 25.0% |
| ! | TATAACTACTTATACAACGA+AGG | + | chr4.1:82426882-82426901 | MS.gene24967:CDS | 25.0% |
| ! | TCTATTAGTATGTAATAGAG+AGG | + | chr4.1:82426545-82426564 | MS.gene24967:CDS | 25.0% |
| !!! | TCATATTTTGGGTTTTATGA+TGG | + | chr4.1:82426812-82426831 | MS.gene24967:CDS | 25.0% |
| AAATCTATGCAGATTGTCAT+GGG | + | chr4.1:82426466-82426485 | MS.gene24967:CDS | 30.0% | |
| AAATTATAGTTCCTCCATGA+TGG | - | chr4.1:82427151-82427170 | None:intergenic | 30.0% | |
| AATGGTGTGTTTAATGAAGA+AGG | + | chr4.1:82426342-82426361 | MS.gene24967:CDS | 30.0% | |
| AGAAACAAAGTACATATTCG+AGG | + | chr4.1:82426583-82426602 | MS.gene24967:CDS | 30.0% | |
| AGACTTAAATGGTGAAGATT+TGG | + | chr4.1:82426311-82426330 | MS.gene24967:CDS | 30.0% | |
| ATGTATCATAAACAGCCTAA+AGG | + | chr4.1:82427242-82427261 | MS.gene24967:intron | 30.0% | |
| CATAAAACCCAAAATATGAC+AGG | - | chr4.1:82426811-82426830 | None:intergenic | 30.0% | |
| CTAGAAATAAACTAGAACCA+AGG | + | chr4.1:82427477-82427496 | MS.gene24967:intron | 30.0% | |
| CTAGAAATAAACTAGAACCA+AGG | - | chr4.1:82427496-82427477 | None:intergenic | 30.0% | |
| GATGTAAACAAAGATGATGA+TGG | + | chr4.1:82426507-82426526 | MS.gene24967:CDS | 30.0% | |
| GGATACTTACAAGAAGATTA+GGG | + | chr4.1:82426377-82426396 | MS.gene24967:CDS | 30.0% | |
| GTAAACTTCGAAAAGAACAT+TGG | - | chr4.1:82426978-82426997 | None:intergenic | 30.0% | |
| GTTTAATGAAGAAGGAAAAG+AGG | + | chr4.1:82426350-82426369 | MS.gene24967:CDS | 30.0% | |
| TGGATACTTACAAGAAGATT+AGG | + | chr4.1:82426376-82426395 | MS.gene24967:CDS | 30.0% | |
| TGTATCATAAACAGCCTAAA+GGG | + | chr4.1:82427243-82427262 | MS.gene24967:intron | 30.0% | |
| TGTGAAGAATCCAAAATTCT+TGG | + | chr4.1:82427373-82427392 | MS.gene24967:intron | 30.0% | |
| TGTGAAGAATCCAAAATTCT+TGG | - | chr4.1:82427392-82427373 | None:intergenic | 30.0% | |
| TGTTACATTGCAGTTATTTG+TGG | + | chr4.1:82427691-82427710 | MS.gene24967:intron | 30.0% | |
| TGTTACATTGCAGTTATTTG+TGG | - | chr4.1:82427710-82427691 | None:intergenic | 30.0% | |
| ! | CATGGAGGAACTATAATTTT+TGG | + | chr4.1:82427152-82427171 | MS.gene24967:intron | 30.0% |
| ! | GTTAGAACCTGTCATATTTT+GGG | + | chr4.1:82426801-82426820 | MS.gene24967:CDS | 30.0% |
| ! | TGTTAGAACCTGTCATATTT+TGG | + | chr4.1:82426800-82426819 | MS.gene24967:CDS | 30.0% |
| !!! | AAGCCTCTTGTTATTTTTTC+TGG | + | chr4.1:82427119-82427138 | MS.gene24967:intron | 30.0% |
| !!! | AGCCTCTTGTTATTTTTTCT+GGG | + | chr4.1:82427120-82427139 | MS.gene24967:intron | 30.0% |
| AAGTTTACCACAACAGAAGA+AGG | + | chr4.1:82426990-82427009 | MS.gene24967:intron | 35.0% | |
| AATGAGAGAAGCTATCAAAG+AGG | + | chr4.1:82427289-82427308 | MS.gene24967:intron | 35.0% | |
| ACTAATAAGTGGAGAGTTTC+TGG | + | chr4.1:82426660-82426679 | MS.gene24967:CDS | 35.0% | |
| AGGATTGGAATTTGATTCAG+AGG | + | chr4.1:82426422-82426441 | MS.gene24967:CDS | 35.0% | |
| ATTTAAGTCTCCATCGTTTG+CGG | - | chr4.1:82426301-82426320 | None:intergenic | 35.0% | |
| CAAAACACTCATAGTCAATC+CGG | - | chr4.1:82427052-82427071 | None:intergenic | 35.0% | |
| CAAGAAGATTAGGGAATTGA+CGG | + | chr4.1:82426386-82426405 | MS.gene24967:CDS | 35.0% | |
| CAATTGGTTGTTCATAACCT+TGG | + | chr4.1:82427634-82427653 | MS.gene24967:intron | 35.0% | |
| CAATTGGTTGTTCATAACCT+TGG | - | chr4.1:82427653-82427634 | None:intergenic | 35.0% | |
| CACCCAGAAAAAATAACAAG+AGG | - | chr4.1:82427125-82427144 | None:intergenic | 35.0% | |
| CTACTTATACAACGAAGGAA+AGG | + | chr4.1:82426887-82426906 | MS.gene24967:CDS | 35.0% | |
| GAAATCTATGCAGATTGTCA+TGG | + | chr4.1:82426465-82426484 | MS.gene24967:CDS | 35.0% | |
| GCGAAAATAAACTAGAACCA+AGG | + | chr4.1:82427581-82427600 | MS.gene24967:intron | 35.0% | |
| GGATGATGATATAAGAGGAT+TGG | + | chr4.1:82426407-82426426 | MS.gene24967:CDS | 35.0% | |
| GTATCATAAACAGCCTAAAG+GGG | + | chr4.1:82427244-82427263 | MS.gene24967:intron | 35.0% | |
| TAAACTAGAACCAAGGTTGT+AGG | + | chr4.1:82427588-82427607 | MS.gene24967:intron | 35.0% | |
| TAGGAACCAAATGAGCATAA+CGG | - | chr4.1:82426722-82426741 | None:intergenic | 35.0% | |
| TATTGGCACTCTTATTGTAG+TGG | - | chr4.1:82427542-82427561 | None:intergenic | 35.0% | |
| TCACTCAATTGACAGTTCTT+AGG | - | chr4.1:82426741-82426760 | None:intergenic | 35.0% | |
| TGAAGAAGGAAAAGAGGATA+TGG | + | chr4.1:82426356-82426375 | MS.gene24967:CDS | 35.0% | |
| TGAATGAGTGAGGATCTTAT+TGG | - | chr4.1:82427559-82427578 | None:intergenic | 35.0% | |
| TTCAAACTAAGTGTTCTGCA+AGG | + | chr4.1:82426613-82426632 | MS.gene24967:CDS | 35.0% | |
| TTTGTGGAGAAATTACACGA+AGG | + | chr4.1:82427707-82427726 | MS.gene24967:CDS | 35.0% | |
| TTTGTGGAGAAATTACACGA+AGG | - | chr4.1:82427726-82427707 | None:intergenic | 35.0% | |
| ! | ATTTTCGCAATGAATGAGTG+AGG | - | chr4.1:82427569-82427588 | None:intergenic | 35.0% |
| ! | GATTGACTATGAGTGTTTTG+GGG | + | chr4.1:82427052-82427071 | MS.gene24967:intron | 35.0% |
| ! | GGATTGACTATGAGTGTTTT+GGG | + | chr4.1:82427051-82427070 | MS.gene24967:intron | 35.0% |
| ! | TGCAGAACACTTAGTTTGAA+TGG | - | chr4.1:82426613-82426632 | None:intergenic | 35.0% |
| ! | TTGACGGATGATGATATAAG+AGG | + | chr4.1:82426402-82426421 | MS.gene24967:CDS | 35.0% |
| !! | ATGATTTTAGCCTACAACCT+TGG | - | chr4.1:82427601-82427620 | None:intergenic | 35.0% |
| AAACACGTGAGACATACAAG+TGG | + | chr4.1:82427195-82427214 | MS.gene24967:intron | 40.0% | |
| AAAGGCAAGAATAGAAGGTG+GGG | + | chr4.1:82426905-82426924 | MS.gene24967:CDS | 40.0% | |
| AGGAACCAAATGAGCATAAC+GGG | - | chr4.1:82426721-82426740 | None:intergenic | 40.0% | |
| AGTTAACTCATGGTTGTGTG+AGG | - | chr4.1:82426694-82426713 | None:intergenic | 40.0% | |
| ATTAAACACACCATTACCGC+TGG | - | chr4.1:82426337-82426356 | None:intergenic | 40.0% | |
| GAAAGGCAAGAATAGAAGGT+GGG | + | chr4.1:82426904-82426923 | MS.gene24967:CDS | 40.0% | |
| GAAATTACACGAAGGAAACG+TGG | + | chr4.1:82427715-82427734 | MS.gene24967:CDS | 40.0% | |
| GAAATTACACGAAGGAAACG+TGG | - | chr4.1:82427734-82427715 | None:intergenic | 40.0% | |
| GAAGGAAAGGCAAGAATAGA+AGG | + | chr4.1:82426900-82426919 | MS.gene24967:CDS | 40.0% | |
| GCAAACGATGGAGACTTAAA+TGG | + | chr4.1:82426300-82426319 | MS.gene24967:CDS | 40.0% | |
| GTTAACTCATGGTTGTGTGA+GGG | - | chr4.1:82426693-82426712 | None:intergenic | 40.0% | |
| TAAACGTCCTTCTTCTGTTG+TGG | - | chr4.1:82427000-82427019 | None:intergenic | 40.0% | |
| TCTGATAAAGCCCTTGTTGA+TGG | + | chr4.1:82426762-82426781 | MS.gene24967:CDS | 40.0% | |
| TTGCATTTGACGCAACTTAC+AGG | + | chr4.1:82427081-82427100 | MS.gene24967:intron | 40.0% | |
| TTTATGATGGCTCAGAAAGG+AGG | + | chr4.1:82426825-82426844 | MS.gene24967:CDS | 40.0% | |
| ! | CGGATTGACTATGAGTGTTT+TGG | + | chr4.1:82427050-82427069 | MS.gene24967:intron | 40.0% |
| ! | CGTTGCATCGTCTTTGTTTA+TGG | + | chr4.1:82427324-82427343 | MS.gene24967:intron | 40.0% |
| ! | TTTTCTGGGTGTAACCATCA+TGG | + | chr4.1:82427134-82427153 | MS.gene24967:intron | 40.0% |
| !! | GGTTTTATGATGGCTCAGAA+AGG | + | chr4.1:82426822-82426841 | MS.gene24967:CDS | 40.0% |
| AAAGGAGGTCATGAGAGTCT+GGG | + | chr4.1:82426840-82426859 | MS.gene24967:CDS | 45.0% | |
| AATGGTGAAGATTTGGCCAG+CGG | + | chr4.1:82426318-82426337 | MS.gene24967:CDS | 45.0% | |
| CAAAGACGATGCAACGAGTT+TGG | - | chr4.1:82427320-82427339 | None:intergenic | 45.0% | |
| GGAAAGGCAAGAATAGAAGG+TGG | + | chr4.1:82426903-82426922 | MS.gene24967:CDS | 45.0% | |
| TCATAAACAGCCTAAAGGGG+TGG | + | chr4.1:82427247-82427266 | MS.gene24967:intron | 45.0% | |
| TCCAACCCGTTATGCTCATT+TGG | + | chr4.1:82426713-82426732 | MS.gene24967:CDS | 45.0% | |
| TGCAGATTGTCATGGGTTTG+TGG | + | chr4.1:82426473-82426492 | MS.gene24967:CDS | 45.0% | |
| TGCGTGAAGACCATCAACAA+GGG | - | chr4.1:82426775-82426794 | None:intergenic | 45.0% | |
| !! | AACGGGTTGGAGTTAACTCA+TGG | - | chr4.1:82426704-82426723 | None:intergenic | 45.0% |
| !! | ACCAAATGAGCATAACGGGT+TGG | - | chr4.1:82426717-82426736 | None:intergenic | 45.0% |
| !! | ATGAGAGTCTGGGATTTTGC+AGG | + | chr4.1:82426850-82426869 | MS.gene24967:CDS | 45.0% |
| !!! | CTATGAGTGTTTTGGGGATG+TGG | + | chr4.1:82427058-82427077 | MS.gene24967:intron | 45.0% |
| ACACTCATAGTCAATCCGGC+TGG | - | chr4.1:82427048-82427067 | None:intergenic | 50.0% | |
| CCATCAGTAACCACCCCTTT+AGG | - | chr4.1:82427260-82427279 | None:intergenic | 50.0% | |
| CCTAAAGGGGTGGTTACTGA+TGG | + | chr4.1:82427257-82427276 | MS.gene24967:intron | 50.0% | |
| GAAAGGAGGTCATGAGAGTC+TGG | + | chr4.1:82426839-82426858 | MS.gene24967:CDS | 50.0% | |
| GAAGATTTGGCCAGCGGTAA+TGG | + | chr4.1:82426324-82426343 | MS.gene24967:CDS | 50.0% | |
| GTGCGTGAAGACCATCAACA+AGG | - | chr4.1:82426776-82426795 | None:intergenic | 50.0% | |
| TCTGGGTGTAACCATCATGG+AGG | + | chr4.1:82427137-82427156 | MS.gene24967:intron | 50.0% | |
| TGCTGCGTTGAGTCATTTGC+AGG | + | chr4.1:82426935-82426954 | MS.gene24967:CDS | 50.0% | |
| TTTGGTCGGATTCAACCAGC+CGG | + | chr4.1:82427030-82427049 | MS.gene24967:intron | 50.0% | |
| !! | GAGTCTGGGATTTTGCAGGA+AGG | + | chr4.1:82426854-82426873 | MS.gene24967:CDS | 50.0% |
| !! | GTTGATGGTCTTCACGCACA+CGG | + | chr4.1:82426777-82426796 | MS.gene24967:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 82426294 | 82427788 | 82426294 | ID=MS.gene24967 |
| chr4.1 | mRNA | 82426294 | 82427788 | 82426294 | ID=MS.gene24967.t1;Parent=MS.gene24967 |
| chr4.1 | exon | 82426294 | 82426979 | 82426294 | ID=MS.gene24967.t1.exon1;Parent=MS.gene24967.t1 |
| chr4.1 | CDS | 82426294 | 82426979 | 82426294 | ID=cds.MS.gene24967.t1;Parent=MS.gene24967.t1 |
| chr4.1 | exon | 82427704 | 82427788 | 82427704 | ID=MS.gene24967.t1.exon2;Parent=MS.gene24967.t1 |
| chr4.1 | CDS | 82427704 | 82427788 | 82427704 | ID=cds.MS.gene24967.t1;Parent=MS.gene24967.t1 |
| Gene Sequence |
| Protein sequence |
