Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25140.t1 | XP_024636633.1 | 96 | 223 | 9 | 0 | 1 | 223 | 1 | 223 | 3.40E-122 | 447.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25140.t1 | Q9SWG3 | 50.3 | 189 | 89 | 2 | 40 | 223 | 50 | 238 | 4.0e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25140.t1 | A0A2K3NBU0 | 72.3 | 220 | 58 | 1 | 4 | 223 | 3 | 219 | 6.1e-89 | 336.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25140.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25140.t1 | MTR_1g008290 | 66.154 | 130 | 41 | 1 | 94 | 223 | 8 | 134 | 1.59e-62 | 192 |
| MS.gene25140.t1 | MTR_5g032260 | 78.313 | 83 | 18 | 0 | 92 | 174 | 323 | 405 | 1.34e-41 | 146 |
| MS.gene25140.t1 | MTR_0402s0040 | 29.570 | 186 | 122 | 3 | 41 | 219 | 26 | 209 | 8.22e-22 | 93.2 |
| MS.gene25140.t1 | MTR_1g070355 | 28.889 | 225 | 119 | 7 | 14 | 204 | 27 | 244 | 1.07e-20 | 90.1 |
| MS.gene25140.t1 | MTR_2g098880 | 37.736 | 106 | 60 | 1 | 40 | 139 | 60 | 165 | 6.12e-20 | 85.5 |
| MS.gene25140.t1 | MTR_2g098880 | 37.736 | 106 | 60 | 1 | 40 | 139 | 72 | 177 | 7.59e-20 | 85.5 |
| MS.gene25140.t1 | MTR_5g076070 | 29.524 | 210 | 119 | 9 | 25 | 217 | 33 | 230 | 3.30e-19 | 84.0 |
| MS.gene25140.t1 | MTR_4g067290 | 34.188 | 117 | 72 | 2 | 28 | 140 | 43 | 158 | 5.13e-16 | 74.7 |
| MS.gene25140.t1 | MTR_4g067290 | 34.188 | 117 | 72 | 2 | 28 | 140 | 43 | 158 | 5.56e-16 | 74.3 |
| MS.gene25140.t1 | MTR_4g067290 | 35.714 | 112 | 67 | 2 | 33 | 140 | 66 | 176 | 5.70e-16 | 74.7 |
| MS.gene25140.t1 | MTR_4g067290 | 35.714 | 112 | 67 | 2 | 33 | 140 | 68 | 178 | 6.10e-16 | 74.7 |
| MS.gene25140.t1 | MTR_4g067290 | 35.714 | 112 | 67 | 2 | 33 | 140 | 68 | 178 | 6.27e-16 | 74.7 |
| MS.gene25140.t1 | MTR_4g067290 | 35.714 | 112 | 67 | 2 | 33 | 140 | 108 | 218 | 1.02e-15 | 74.7 |
| MS.gene25140.t1 | MTR_3g006370 | 34.862 | 109 | 66 | 1 | 36 | 139 | 45 | 153 | 2.31e-15 | 72.8 |
| MS.gene25140.t1 | MTR_7g446520 | 28.111 | 217 | 123 | 7 | 13 | 216 | 56 | 252 | 8.43e-15 | 72.4 |
| MS.gene25140.t1 | MTR_2g098920 | 33.566 | 143 | 81 | 3 | 11 | 140 | 41 | 182 | 1.96e-14 | 70.9 |
| MS.gene25140.t1 | MTR_5g015480 | 33.600 | 125 | 77 | 3 | 41 | 159 | 56 | 180 | 1.14e-12 | 65.9 |
| MS.gene25140.t1 | MTR_7g446060 | 35.294 | 85 | 55 | 0 | 122 | 206 | 6 | 90 | 3.54e-12 | 62.0 |
| MS.gene25140.t1 | MTR_1g019850 | 27.673 | 159 | 102 | 4 | 27 | 175 | 48 | 203 | 1.04e-11 | 62.8 |
| MS.gene25140.t1 | MTR_6g051425 | 20.707 | 198 | 138 | 4 | 33 | 216 | 9 | 201 | 2.79e-11 | 62.4 |
| MS.gene25140.t1 | MTR_0856s0010 | 29.688 | 128 | 87 | 2 | 36 | 161 | 29 | 155 | 3.27e-11 | 60.1 |
| MS.gene25140.t1 | MTR_4g035820 | 27.273 | 231 | 146 | 8 | 2 | 215 | 33 | 258 | 3.52e-11 | 62.4 |
| MS.gene25140.t1 | MTR_7g446480 | 34.737 | 95 | 61 | 1 | 123 | 216 | 151 | 245 | 7.52e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25140.t1 | AT4G15090 | 49.206 | 189 | 91 | 2 | 40 | 223 | 50 | 238 | 6.72e-53 | 182 |
| MS.gene25140.t1 | AT4G15090 | 49.206 | 189 | 91 | 2 | 40 | 223 | 50 | 238 | 6.72e-53 | 182 |
| MS.gene25140.t1 | AT4G15090 | 49.206 | 189 | 91 | 2 | 40 | 223 | 50 | 238 | 6.72e-53 | 182 |
| MS.gene25140.t1 | AT4G15090 | 49.206 | 189 | 91 | 2 | 40 | 223 | 50 | 238 | 6.72e-53 | 182 |
| MS.gene25140.t1 | AT4G15090 | 49.206 | 189 | 91 | 2 | 40 | 223 | 50 | 238 | 6.72e-53 | 182 |
| MS.gene25140.t1 | AT1G76320 | 44.751 | 181 | 92 | 3 | 45 | 223 | 1 | 175 | 5.34e-43 | 154 |
| MS.gene25140.t1 | AT1G76320 | 44.751 | 181 | 92 | 3 | 45 | 223 | 1 | 175 | 5.34e-43 | 154 |
| MS.gene25140.t1 | AT3G22170 | 41.000 | 200 | 79 | 3 | 40 | 222 | 69 | 246 | 5.42e-43 | 154 |
| MS.gene25140.t1 | AT3G22170 | 41.000 | 200 | 79 | 3 | 40 | 222 | 69 | 246 | 5.42e-43 | 154 |
| MS.gene25140.t1 | AT1G76320 | 44.751 | 181 | 92 | 3 | 45 | 223 | 1 | 175 | 5.45e-43 | 154 |
| MS.gene25140.t1 | AT1G76320 | 44.751 | 181 | 92 | 3 | 45 | 223 | 1 | 175 | 5.87e-43 | 153 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.39e-31 | 120 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.53e-31 | 120 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.53e-31 | 120 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.53e-31 | 120 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.78e-31 | 119 |
| MS.gene25140.t1 | AT2G32250 | 53.571 | 112 | 49 | 2 | 44 | 154 | 41 | 150 | 6.78e-31 | 119 |
| MS.gene25140.t1 | AT2G32250 | 53.153 | 111 | 49 | 2 | 45 | 154 | 1 | 109 | 5.91e-30 | 117 |
| MS.gene25140.t1 | AT2G32250 | 53.153 | 111 | 49 | 2 | 45 | 154 | 1 | 109 | 5.92e-30 | 117 |
| MS.gene25140.t1 | AT4G38180 | 36.842 | 190 | 111 | 3 | 40 | 221 | 72 | 260 | 2.05e-29 | 115 |
| MS.gene25140.t1 | AT4G19990 | 34.483 | 174 | 88 | 3 | 1 | 157 | 4 | 168 | 3.00e-22 | 95.1 |
| MS.gene25140.t1 | AT4G19990 | 40.000 | 135 | 64 | 1 | 40 | 157 | 20 | 154 | 4.25e-22 | 94.4 |
| MS.gene25140.t1 | AT4G19990 | 40.000 | 135 | 64 | 1 | 40 | 157 | 20 | 154 | 4.25e-22 | 94.4 |
| MS.gene25140.t1 | AT4G19990 | 42.735 | 117 | 50 | 1 | 44 | 143 | 24 | 140 | 5.14e-22 | 94.4 |
| MS.gene25140.t1 | AT4G19990 | 42.735 | 117 | 50 | 1 | 44 | 143 | 24 | 140 | 5.14e-22 | 94.4 |
| MS.gene25140.t1 | AT4G19990 | 40.000 | 135 | 64 | 1 | 40 | 157 | 20 | 154 | 5.20e-22 | 94.4 |
| MS.gene25140.t1 | AT3G07500 | 38.298 | 141 | 70 | 5 | 12 | 140 | 1 | 136 | 1.18e-17 | 78.6 |
| MS.gene25140.t1 | AT3G59470 | 33.088 | 136 | 85 | 3 | 8 | 140 | 40 | 172 | 4.92e-17 | 77.8 |
| MS.gene25140.t1 | AT3G59470 | 33.088 | 136 | 85 | 3 | 8 | 140 | 40 | 172 | 4.92e-17 | 77.8 |
| MS.gene25140.t1 | AT3G59470 | 32.847 | 137 | 86 | 3 | 8 | 141 | 52 | 185 | 5.54e-17 | 77.8 |
| MS.gene25140.t1 | AT1G80010 | 30.526 | 190 | 123 | 3 | 41 | 222 | 95 | 283 | 5.40e-16 | 76.6 |
| MS.gene25140.t1 | AT1G10240 | 26.106 | 226 | 150 | 7 | 5 | 217 | 14 | 235 | 9.03e-16 | 76.3 |
| MS.gene25140.t1 | AT1G10240 | 26.106 | 226 | 150 | 7 | 5 | 217 | 14 | 235 | 9.03e-16 | 76.3 |
| MS.gene25140.t1 | AT5G18960 | 36.667 | 120 | 67 | 1 | 22 | 141 | 192 | 302 | 2.06e-15 | 75.1 |
| MS.gene25140.t1 | AT5G18960 | 34.454 | 119 | 69 | 2 | 20 | 138 | 22 | 131 | 7.06e-15 | 73.6 |
| MS.gene25140.t1 | AT5G18960 | 36.667 | 120 | 67 | 1 | 22 | 141 | 192 | 302 | 2.06e-15 | 75.1 |
| MS.gene25140.t1 | AT5G18960 | 34.454 | 119 | 69 | 2 | 20 | 138 | 22 | 131 | 7.06e-15 | 73.6 |
| MS.gene25140.t1 | AT2G43280 | 33.654 | 104 | 64 | 1 | 40 | 138 | 21 | 124 | 1.25e-14 | 70.5 |
| MS.gene25140.t1 | AT1G52520 | 30.822 | 146 | 91 | 2 | 2 | 138 | 38 | 182 | 4.10e-14 | 71.2 |
| MS.gene25140.t1 | AT4G12850 | 35.000 | 100 | 64 | 1 | 40 | 138 | 10 | 109 | 8.35e-14 | 66.6 |
| MS.gene25140.t1 | AT4G12850 | 35.000 | 100 | 64 | 1 | 40 | 138 | 10 | 109 | 1.70e-13 | 65.9 |
| MS.gene25140.t1 | AT4G12850 | 35.000 | 100 | 64 | 1 | 40 | 138 | 10 | 109 | 1.87e-13 | 66.6 |
| MS.gene25140.t1 | AT3G06250 | 37.255 | 102 | 55 | 1 | 40 | 141 | 189 | 281 | 3.19e-13 | 68.6 |
| MS.gene25140.t1 | AT3G06250 | 34.286 | 105 | 60 | 2 | 34 | 138 | 21 | 116 | 5.02e-13 | 68.2 |
| MS.gene25140.t1 | AT3G06250 | 37.255 | 102 | 55 | 1 | 40 | 141 | 189 | 281 | 3.19e-13 | 68.6 |
| MS.gene25140.t1 | AT3G06250 | 34.286 | 105 | 60 | 2 | 34 | 138 | 21 | 116 | 5.02e-13 | 68.2 |
| MS.gene25140.t1 | AT3G06250 | 37.255 | 102 | 55 | 1 | 40 | 141 | 189 | 281 | 3.19e-13 | 68.6 |
| MS.gene25140.t1 | AT3G06250 | 34.286 | 105 | 60 | 2 | 34 | 138 | 21 | 116 | 5.02e-13 | 68.2 |
| MS.gene25140.t1 | AT5G28530 | 25.543 | 184 | 119 | 9 | 41 | 211 | 55 | 233 | 6.22e-11 | 62.0 |
| MS.gene25140.t1 | AT5G28530 | 25.543 | 184 | 119 | 9 | 41 | 211 | 55 | 233 | 6.44e-11 | 62.0 |
| MS.gene25140.t1 | AT5G28530 | 25.543 | 184 | 119 | 9 | 41 | 211 | 55 | 233 | 6.44e-11 | 62.0 |
| MS.gene25140.t1 | AT5G28530 | 25.543 | 184 | 119 | 9 | 41 | 211 | 55 | 233 | 6.83e-11 | 61.6 |
| MS.gene25140.t1 | AT5G28530 | 25.543 | 184 | 119 | 9 | 41 | 211 | 55 | 233 | 6.84e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATTTGTGATGGAAAA+TGG | 0.198140 | 8.4:+72989854 | MS.gene25140:CDS |
| AACGCCGACCTTTATCTAAA+TGG | 0.237387 | 8.4:-72990089 | None:intergenic |
| TATGCTAAGTCAGTTGGATT+TGG | 0.280799 | 8.4:+72989679 | MS.gene25140:CDS |
| TTCATGTACCGTTGATTTAG+AGG | 0.293148 | 8.4:+72989582 | MS.gene25140:CDS |
| GAGCTTTATTGATTCCTCTA+TGG | 0.299611 | 8.4:-72989945 | None:intergenic |
| TCAAATTCCATTCCAATGTT+AGG | 0.302097 | 8.4:-72989622 | None:intergenic |
| GCCACAATGGATAAAGAATA+TGG | 0.304555 | 8.4:+72990024 | MS.gene25140:CDS |
| ATGCTAAGTCAGTTGGATTT+GGG | 0.354359 | 8.4:+72989680 | MS.gene25140:CDS |
| GTAAGAAACCATTTAGATAA+AGG | 0.354999 | 8.4:+72990081 | MS.gene25140:CDS |
| CGGCGTTTGGCTTTAGAGTC+AGG | 0.368656 | 8.4:+72990105 | MS.gene25140:CDS |
| TTTAGATAAAGGTCGGCGTT+TGG | 0.420224 | 8.4:+72990092 | MS.gene25140:CDS |
| GAATTAATGGAAGTTGTTGA+TGG | 0.438521 | 8.4:+72989496 | None:intergenic |
| GATGGAGAACATTCTATTGA+TGG | 0.443366 | 8.4:+72989520 | MS.gene25140:CDS |
| GGAAAATAATGTGCATATGC+TGG | 0.447627 | 8.4:-72989919 | None:intergenic |
| ATATGAAAACATTGGTTGCT+TGG | 0.449564 | 8.4:+72990050 | MS.gene25140:CDS |
| ATGGAAGTTGTTGATGGGGA+TGG | 0.471153 | 8.4:+72989502 | MS.gene25140:CDS |
| TCCATATTCTTTATCCATTG+TGG | 0.490369 | 8.4:-72990025 | None:intergenic |
| CGTGTTAAAAGAATTTGTGA+TGG | 0.498075 | 8.4:+72989847 | MS.gene25140:CDS |
| ACTCATTATGCTAAGTCAGT+TGG | 0.500199 | 8.4:+72989673 | MS.gene25140:CDS |
| AATTAATGGAAGTTGTTGAT+GGG | 0.514194 | 8.4:+72989497 | None:intergenic |
| AGTTATGCTTGCACAAGATA+CGG | 0.514711 | 8.4:+72989757 | MS.gene25140:CDS |
| AAATCCACGTCCTTGTTTGA+AGG | 0.523815 | 8.4:+72989804 | MS.gene25140:CDS |
| ATTGAAACTTTGCACCATGT+TGG | 0.528985 | 8.4:+72989979 | MS.gene25140:CDS |
| TCCACGTCCTTGTTTGAAGG+TGG | 0.544839 | 8.4:+72989807 | MS.gene25140:CDS |
| TTATTGATTCCTCTATGGCA+AGG | 0.554774 | 8.4:-72989940 | None:intergenic |
| ATGGAGAACATTCTATTGAT+GGG | 0.556834 | 8.4:+72989521 | MS.gene25140:CDS |
| TATGGAGGATATGAAAACAT+TGG | 0.557417 | 8.4:+72990042 | MS.gene25140:CDS |
| AGGAGATGCAAATACAATGT+TGG | 0.557447 | 8.4:+72990125 | MS.gene25140:CDS |
| CCACGTCCTTGTTTGAAGGT+GGG | 0.564321 | 8.4:+72989808 | MS.gene25140:CDS |
| GAATGAAGAGCAAGCTGTCA+AGG | 0.567338 | 8.4:+72989543 | MS.gene25140:CDS |
| TCAAGAACCTAACATTGGAA+TGG | 0.572602 | 8.4:+72989615 | MS.gene25140:CDS |
| TGCTTGTTCTCACTCCAACA+TGG | 0.579133 | 8.4:-72989993 | None:intergenic |
| TTGTTTGAAGGTGGGATGTG+AGG | 0.585943 | 8.4:+72989816 | MS.gene25140:CDS |
| CCCACCTTCAAACAAGGACG+TGG | 0.589716 | 8.4:-72989808 | None:intergenic |
| TCACATCCCACCTTCAAACA+AGG | 0.596792 | 8.4:-72989814 | None:intergenic |
| GAAACCATTTAGATAAAGGT+CGG | 0.598835 | 8.4:+72990085 | MS.gene25140:CDS |
| GGTGGTCAAGAACCTAACAT+TGG | 0.606305 | 8.4:+72989610 | MS.gene25140:CDS |
| ACCGTTAGCCTCTAAATCAA+CGG | 0.614838 | 8.4:-72989590 | None:intergenic |
| ACCGTTGATTTAGAGGCTAA+CGG | 0.628314 | 8.4:+72989589 | MS.gene25140:CDS |
| ATTAATGGAAGTTGTTGATG+GGG | 0.631609 | 8.4:+72989498 | None:intergenic |
| ACAATGGATAAAGAATATGG+AGG | 0.714078 | 8.4:+72990027 | MS.gene25140:CDS |
| GTTGATTTAGAGGCTAACGG+TGG | 0.762259 | 8.4:+72989592 | MS.gene25140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTAAGAAACCATTTAGATAA+AGG | + | chr8.4:72990081-72990100 | MS.gene25140:CDS | 25.0% |
| !! | AAAGAATTTGTGATGGAAAA+TGG | + | chr8.4:72989854-72989873 | MS.gene25140:CDS | 25.0% |
| ACAATGGATAAAGAATATGG+AGG | + | chr8.4:72990027-72990046 | MS.gene25140:CDS | 30.0% | |
| ATGGAGAACATTCTATTGAT+GGG | + | chr8.4:72989521-72989540 | MS.gene25140:CDS | 30.0% | |
| CGTGTTAAAAGAATTTGTGA+TGG | + | chr8.4:72989847-72989866 | MS.gene25140:CDS | 30.0% | |
| GAAACCATTTAGATAAAGGT+CGG | + | chr8.4:72990085-72990104 | MS.gene25140:CDS | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | + | chr8.4:72990042-72990061 | MS.gene25140:CDS | 30.0% | |
| TCAAATTCCATTCCAATGTT+AGG | - | chr8.4:72989625-72989644 | None:intergenic | 30.0% | |
| TCCATATTCTTTATCCATTG+TGG | - | chr8.4:72990028-72990047 | None:intergenic | 30.0% | |
| ! | ATATGAAAACATTGGTTGCT+TGG | + | chr8.4:72990050-72990069 | MS.gene25140:CDS | 30.0% |
| !!! | AAGCAAATTTTTTGCCACAA+TGG | + | chr8.4:72990011-72990030 | MS.gene25140:CDS | 30.0% |
| ACTCATTATGCTAAGTCAGT+TGG | + | chr8.4:72989673-72989692 | MS.gene25140:CDS | 35.0% | |
| AGGAGATGCAAATACAATGT+TGG | + | chr8.4:72990125-72990144 | MS.gene25140:CDS | 35.0% | |
| AGTTATGCTTGCACAAGATA+CGG | + | chr8.4:72989757-72989776 | MS.gene25140:CDS | 35.0% | |
| ATGCTAAGTCAGTTGGATTT+GGG | + | chr8.4:72989680-72989699 | MS.gene25140:CDS | 35.0% | |
| ATTGAAACTTTGCACCATGT+TGG | + | chr8.4:72989979-72989998 | MS.gene25140:CDS | 35.0% | |
| GATGGAGAACATTCTATTGA+TGG | + | chr8.4:72989520-72989539 | MS.gene25140:CDS | 35.0% | |
| GCCACAATGGATAAAGAATA+TGG | + | chr8.4:72990024-72990043 | MS.gene25140:CDS | 35.0% | |
| GGAAAATAATGTGCATATGC+TGG | - | chr8.4:72989922-72989941 | None:intergenic | 35.0% | |
| TATGCTAAGTCAGTTGGATT+TGG | + | chr8.4:72989679-72989698 | MS.gene25140:CDS | 35.0% | |
| TCAAGAACCTAACATTGGAA+TGG | + | chr8.4:72989615-72989634 | MS.gene25140:CDS | 35.0% | |
| ! | CATTATTTTCCTTGCCATAG+AGG | + | chr8.4:72989931-72989950 | MS.gene25140:CDS | 35.0% |
| !! | GAGCTTTATTGATTCCTCTA+TGG | - | chr8.4:72989948-72989967 | None:intergenic | 35.0% |
| !! | TTATTGATTCCTCTATGGCA+AGG | - | chr8.4:72989943-72989962 | None:intergenic | 35.0% |
| !! | TTCATGTACCGTTGATTTAG+AGG | + | chr8.4:72989582-72989601 | MS.gene25140:CDS | 35.0% |
| AACGCCGACCTTTATCTAAA+TGG | - | chr8.4:72990092-72990111 | None:intergenic | 40.0% | |
| CTGGAAAAAGTTCGTGATTG+TGG | - | chr8.4:72989903-72989922 | None:intergenic | 40.0% | |
| TTTAGATAAAGGTCGGCGTT+TGG | + | chr8.4:72990092-72990111 | MS.gene25140:CDS | 40.0% | |
| ! | AAATCCACGTCCTTGTTTGA+AGG | + | chr8.4:72989804-72989823 | MS.gene25140:CDS | 40.0% |
| ! | ACCGTTAGCCTCTAAATCAA+CGG | - | chr8.4:72989593-72989612 | None:intergenic | 40.0% |
| !! | ACCGTTGATTTAGAGGCTAA+CGG | + | chr8.4:72989589-72989608 | MS.gene25140:CDS | 40.0% |
| GAATGAAGAGCAAGCTGTCA+AGG | + | chr8.4:72989543-72989562 | MS.gene25140:CDS | 45.0% | |
| GGTGGTCAAGAACCTAACAT+TGG | + | chr8.4:72989610-72989629 | MS.gene25140:CDS | 45.0% | |
| TCACATCCCACCTTCAAACA+AGG | - | chr8.4:72989817-72989836 | None:intergenic | 45.0% | |
| TGCTTGTTCTCACTCCAACA+TGG | - | chr8.4:72989996-72990015 | None:intergenic | 45.0% | |
| TTGTTTGAAGGTGGGATGTG+AGG | + | chr8.4:72989816-72989835 | MS.gene25140:CDS | 45.0% | |
| ! | AGGACGTGGATTTTGTGAAC+TGG | - | chr8.4:72989797-72989816 | None:intergenic | 45.0% |
| ! | ATGGAAGTTGTTGATGGGGA+TGG | + | chr8.4:72989502-72989521 | MS.gene25140:CDS | 45.0% |
| ! | GTTGATTTAGAGGCTAACGG+TGG | + | chr8.4:72989592-72989611 | MS.gene25140:CDS | 45.0% |
| ! | CCACGTCCTTGTTTGAAGGT+GGG | + | chr8.4:72989808-72989827 | MS.gene25140:CDS | 50.0% |
| ! | TCCACGTCCTTGTTTGAAGG+TGG | + | chr8.4:72989807-72989826 | MS.gene25140:CDS | 50.0% |
| CCCACCTTCAAACAAGGACG+TGG | - | chr8.4:72989811-72989830 | None:intergenic | 55.0% | |
| !! | CGGCGTTTGGCTTTAGAGTC+AGG | + | chr8.4:72990105-72990124 | MS.gene25140:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72989502 | 72990173 | 72989502 | ID=MS.gene25140 |
| chr8.4 | mRNA | 72989502 | 72990173 | 72989502 | ID=MS.gene25140.t1;Parent=MS.gene25140 |
| chr8.4 | exon | 72989502 | 72990173 | 72989502 | ID=MS.gene25140.t1.exon1;Parent=MS.gene25140.t1 |
| chr8.4 | CDS | 72989502 | 72990173 | 72989502 | ID=cds.MS.gene25140.t1;Parent=MS.gene25140.t1 |
| Gene Sequence |
| Protein sequence |
