Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25166.t1 | XP_013466599.1 | 87.9 | 331 | 20 | 5 | 1 | 316 | 29 | 354 | 2.90E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25166.t1 | Q9LT23 | 45.3 | 274 | 131 | 4 | 15 | 279 | 29 | 292 | 1.9e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25166.t1 | A0A072VR73 | 87.9 | 331 | 20 | 5 | 1 | 316 | 29 | 354 | 2.1e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25166.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25166.t1 | MTR_1g032600 | 87.651 | 332 | 21 | 5 | 1 | 317 | 29 | 355 | 0.0 | 566 |
| MS.gene25166.t1 | MTR_4g075480 | 54.651 | 258 | 95 | 6 | 32 | 273 | 13 | 264 | 2.92e-77 | 239 |
| MS.gene25166.t1 | MTR_4g075480 | 56.962 | 237 | 83 | 4 | 50 | 273 | 6 | 236 | 1.86e-76 | 236 |
| MS.gene25166.t1 | MTR_4g108360 | 42.056 | 107 | 62 | 0 | 44 | 150 | 44 | 150 | 1.72e-22 | 94.4 |
| MS.gene25166.t1 | MTR_4g081370 | 44.681 | 94 | 51 | 1 | 55 | 147 | 37 | 130 | 4.35e-20 | 86.7 |
| MS.gene25166.t1 | MTR_4g081370 | 38.095 | 147 | 80 | 4 | 5 | 147 | 35 | 174 | 6.23e-20 | 87.4 |
| MS.gene25166.t1 | MTR_2g082640 | 44.000 | 100 | 51 | 2 | 55 | 153 | 74 | 169 | 1.29e-19 | 86.3 |
| MS.gene25166.t1 | MTR_2g089000 | 44.565 | 92 | 50 | 1 | 55 | 145 | 110 | 201 | 7.34e-18 | 82.0 |
| MS.gene25166.t1 | MTR_1g043430 | 34.146 | 205 | 105 | 8 | 13 | 216 | 57 | 232 | 1.67e-17 | 80.9 |
| MS.gene25166.t1 | MTR_4g108360 | 44.595 | 74 | 41 | 0 | 77 | 150 | 24 | 97 | 2.04e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25166.t1 | AT3G19860 | 51.452 | 241 | 104 | 3 | 48 | 279 | 3 | 239 | 1.78e-75 | 233 |
| MS.gene25166.t1 | AT3G19860 | 51.029 | 243 | 106 | 3 | 48 | 281 | 34 | 272 | 4.14e-75 | 233 |
| MS.gene25166.t1 | AT3G19860 | 51.452 | 241 | 104 | 3 | 48 | 279 | 56 | 292 | 2.01e-74 | 232 |
| MS.gene25166.t1 | AT4G36060 | 40.496 | 242 | 92 | 8 | 54 | 278 | 30 | 236 | 5.64e-47 | 159 |
| MS.gene25166.t1 | AT4G36060 | 40.496 | 242 | 92 | 8 | 54 | 278 | 48 | 254 | 2.06e-46 | 159 |
| MS.gene25166.t1 | AT4G36060 | 52.027 | 148 | 55 | 4 | 54 | 201 | 30 | 161 | 4.37e-45 | 154 |
| MS.gene25166.t1 | AT4G36060 | 52.027 | 148 | 55 | 4 | 54 | 201 | 48 | 179 | 1.48e-44 | 154 |
| MS.gene25166.t1 | AT5G54680 | 43.000 | 100 | 52 | 2 | 55 | 153 | 76 | 171 | 4.73e-19 | 84.7 |
| MS.gene25166.t1 | AT3G23210 | 37.681 | 138 | 75 | 4 | 55 | 181 | 138 | 275 | 8.58e-19 | 85.1 |
| MS.gene25166.t1 | AT3G23210 | 35.802 | 162 | 86 | 5 | 38 | 181 | 143 | 304 | 1.24e-18 | 85.1 |
| MS.gene25166.t1 | AT1G51070 | 39.655 | 116 | 66 | 2 | 36 | 147 | 49 | 164 | 3.43e-17 | 79.7 |
| MS.gene25166.t1 | AT1G51070 | 39.655 | 116 | 66 | 2 | 36 | 147 | 115 | 230 | 7.61e-17 | 79.7 |
| MS.gene25166.t1 | AT3G47640 | 33.645 | 107 | 71 | 0 | 49 | 155 | 26 | 132 | 1.87e-16 | 77.8 |
| MS.gene25166.t1 | AT3G47640 | 33.645 | 107 | 71 | 0 | 49 | 155 | 26 | 132 | 1.87e-16 | 77.8 |
| MS.gene25166.t1 | AT3G47640 | 33.645 | 107 | 71 | 0 | 49 | 155 | 26 | 132 | 1.87e-16 | 77.8 |
| MS.gene25166.t1 | AT4G14410 | 34.028 | 144 | 73 | 4 | 55 | 197 | 129 | 251 | 3.53e-14 | 72.0 |
| MS.gene25166.t1 | AT4G14410 | 34.028 | 144 | 73 | 4 | 55 | 197 | 129 | 251 | 3.53e-14 | 72.0 |
| MS.gene25166.t1 | AT4G14410 | 34.028 | 144 | 73 | 4 | 55 | 197 | 135 | 257 | 4.27e-14 | 71.6 |
Find 80 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAATATGACCAGGATTT+TGG | 0.212723 | 1.3:-17529911 | None:intergenic |
| CATCAATTGGGAAACGTAAT+AGG | 0.223751 | 1.3:+17528346 | MS.gene25166:CDS |
| ATAGGAATGGGGTACGTATA+AGG | 0.261739 | 1.3:-17529819 | None:intergenic |
| TTAAAGACGCTTTCTCTTCT+CGG | 0.308272 | 1.3:-17529701 | None:intergenic |
| GTGTTTAGCGGCGGAGGCGG+TGG | 0.314738 | 1.3:-17528061 | None:intergenic |
| TTGTCATTCCGTGGTCTATC+AGG | 0.332142 | 1.3:-17529468 | None:intergenic |
| AGGCAGACCGTGAGAAAATC+AGG | 0.344532 | 1.3:+17528299 | MS.gene25166:CDS |
| TCAAGCTCTGTTGCCACATC+TGG | 0.367803 | 1.3:-17530101 | None:intergenic |
| TGAGCTGATGGCATCTCTAT+TGG | 0.379396 | 1.3:-17529978 | None:intergenic |
| GAGCCAGTATTCTGCATCTC+AGG | 0.388043 | 1.3:+17530316 | MS.gene25166:CDS |
| AAAGTCAATTAACTAGCCTT+TGG | 0.391631 | 1.3:-17530374 | None:intergenic |
| ATCTCTATTGGAGGGATAGC+TGG | 0.399284 | 1.3:-17529966 | None:intergenic |
| GTCCCTGAGATGCAGAATAC+TGG | 0.415172 | 1.3:-17530319 | None:intergenic |
| TGTTTAGCGGCGGAGGCGGT+GGG | 0.428409 | 1.3:-17528060 | None:intergenic |
| ATTGGCATTGGCATAGGAAT+GGG | 0.437156 | 1.3:-17529831 | None:intergenic |
| TTGAATTGTCTCTGTGATGA+TGG | 0.441426 | 1.3:-17529496 | None:intergenic |
| GTGTAGAGAGAGGAGTGAGA+TGG | 0.443108 | 1.3:+17528246 | MS.gene25166:intron |
| TAGGAATGGGGTACGTATAA+GGG | 0.443341 | 1.3:-17529818 | None:intergenic |
| TGGAGTGTTGCTGACGCTGT+TGG | 0.452978 | 1.3:-17530354 | None:intergenic |
| TTCGAGGTGTTTAGCGGCGG+AGG | 0.460101 | 1.3:-17528067 | None:intergenic |
| GAAACTGGACCAGGAGGGAT+TGG | 0.465478 | 1.3:-17529849 | None:intergenic |
| GCCTGGATCATCAACACAAC+AGG | 0.466264 | 1.3:+17530133 | MS.gene25166:CDS |
| TGGTTTCCATAGTAAGGAAA+AGG | 0.470758 | 1.3:-17529891 | None:intergenic |
| GAGCTTGAGCTTAAGATGCC+TGG | 0.473388 | 1.3:+17530116 | MS.gene25166:CDS |
| GCATGGCTCTGACTCTCTGC+TGG | 0.479835 | 1.3:-17529755 | None:intergenic |
| GTGATTCTTCTGCCGCAGTA+AGG | 0.481448 | 1.3:-17528099 | None:intergenic |
| AGGTTGCATAGGTGGGTGAA+TGG | 0.481673 | 1.3:-17529871 | None:intergenic |
| AATATCTTTACGATTGGTGA+TGG | 0.482957 | 1.3:-17528131 | None:intergenic |
| GAGGTGTTTAGCGGCGGAGG+CGG | 0.484202 | 1.3:-17528064 | None:intergenic |
| CTAAACACGTGGGATGTAGA+AGG | 0.488709 | 1.3:-17530005 | None:intergenic |
| CCTGACAATATCTTTACGAT+TGG | 0.490047 | 1.3:-17528137 | None:intergenic |
| GGGATAGCTGGAGCTGAGAA+TGG | 0.491183 | 1.3:-17529954 | None:intergenic |
| ATGCCAATGCCAATCCCTCC+TGG | 0.495420 | 1.3:+17529840 | MS.gene25166:CDS |
| TTACGATTGGTGATGGGCAG+CGG | 0.497262 | 1.3:-17528124 | None:intergenic |
| TACTATGGAAACCAAAATCC+TGG | 0.503568 | 1.3:+17529900 | MS.gene25166:CDS |
| TAAGGAAAAGGTTGCATAGG+TGG | 0.507917 | 1.3:-17529879 | None:intergenic |
| GGGTGAATGGAAACTGGACC+AGG | 0.511208 | 1.3:-17529858 | None:intergenic |
| GATTGGCATTGGCATAGGAA+TGG | 0.513417 | 1.3:-17529832 | None:intergenic |
| AGAGACAATTCAAGTGCTAA+AGG | 0.518046 | 1.3:+17529506 | MS.gene25166:CDS |
| CCAATCGTAAAGATATTGTC+AGG | 0.525025 | 1.3:+17528137 | MS.gene25166:CDS |
| AATTGCAGTCCATGGTGGCA+TGG | 0.531488 | 1.3:-17529772 | None:intergenic |
| ATAGGTGGGTGAATGGAAAC+TGG | 0.533427 | 1.3:-17529864 | None:intergenic |
| GCTGATGGCATCTCTATTGG+AGG | 0.536435 | 1.3:-17529975 | None:intergenic |
| CTGTAGGATTGCACATCTAG+AGG | 0.537095 | 1.3:+17530236 | MS.gene25166:intron |
| CTACATCTTTCTGCATCACT+AGG | 0.537613 | 1.3:-17530071 | None:intergenic |
| GGAGGGATTGGCATTGGCAT+AGG | 0.544556 | 1.3:-17529837 | None:intergenic |
| GAATGGTCAATTGCAGTCCA+TGG | 0.547989 | 1.3:-17529780 | None:intergenic |
| GGACCAGGAGGGATTGGCAT+TGG | 0.551182 | 1.3:-17529843 | None:intergenic |
| TAGTAAGGAAAAGGTTGCAT+AGG | 0.564004 | 1.3:-17529882 | None:intergenic |
| AACAACACATGATCAATCAA+TGG | 0.565806 | 1.3:+17528035 | None:intergenic |
| TGATTCTTCTGCCGCAGTAA+GGG | 0.566675 | 1.3:-17528098 | None:intergenic |
| AAGGAAAAGGTTGCATAGGT+GGG | 0.567952 | 1.3:-17529878 | None:intergenic |
| ACCTGTTGTGTTGATGATCC+AGG | 0.570906 | 1.3:-17530134 | None:intergenic |
| GTAGAAGGATACTGAGCTGA+TGG | 0.572163 | 1.3:-17529990 | None:intergenic |
| ATATCTTTACGATTGGTGAT+GGG | 0.578157 | 1.3:-17528130 | None:intergenic |
| CTAGGTCTTCTTCTATGACC+CGG | 0.584520 | 1.3:-17530053 | None:intergenic |
| AGCCAGTATTCTGCATCTCA+GGG | 0.590410 | 1.3:+17530317 | MS.gene25166:CDS |
| ATATACATTGAGGATAGACT+TGG | 0.594802 | 1.3:-17529930 | None:intergenic |
| GAGTCTTGAAGCAAGTCACC+GGG | 0.596044 | 1.3:+17530035 | MS.gene25166:intron |
| TCTTCTGCCGCAGTAAGGGA+TGG | 0.602962 | 1.3:-17528094 | None:intergenic |
| AGAGCATAAATCACTTTCTG+AGG | 0.607090 | 1.3:+17529560 | MS.gene25166:CDS |
| GATAGACTTGGAATATGACC+AGG | 0.610908 | 1.3:-17529918 | None:intergenic |
| CGATTGGTGATGGGCAGCGG+AGG | 0.614010 | 1.3:-17528121 | None:intergenic |
| TGAATGGAAACTGGACCAGG+AGG | 0.615553 | 1.3:-17529855 | None:intergenic |
| TTGGCATTGGCATAGGAATG+GGG | 0.623200 | 1.3:-17529830 | None:intergenic |
| TGAGAATGGAATATACATTG+AGG | 0.623316 | 1.3:-17529940 | None:intergenic |
| ATGGTTGCCTTGTCATTCCG+TGG | 0.623588 | 1.3:-17529477 | None:intergenic |
| TGTTGCTAGAAAAGTTCAGA+AGG | 0.633118 | 1.3:+17528279 | MS.gene25166:CDS |
| GGCTACTCATGACAACAGAA+TGG | 0.634259 | 1.3:-17529797 | None:intergenic |
| GAATGGAAACTGGACCAGGA+GGG | 0.634423 | 1.3:-17529854 | None:intergenic |
| CTGATGGCATCTCTATTGGA+GGG | 0.634505 | 1.3:-17529974 | None:intergenic |
| CAGCGTCAGCAACACTCCAA+AGG | 0.635368 | 1.3:+17530358 | MS.gene25166:CDS |
| GAGTCAGAGCCATGCCACCA+TGG | 0.644309 | 1.3:+17529763 | MS.gene25166:CDS |
| TGATAGACCACGGAATGACA+AGG | 0.652628 | 1.3:+17529470 | MS.gene25166:CDS |
| ATGTAGTGTGTCTCCAGATG+TGG | 0.671060 | 1.3:+17530088 | MS.gene25166:CDS |
| ATGCAGATCCTGATAGACCA+CGG | 0.688242 | 1.3:+17529460 | MS.gene25166:intron |
| TGGTCAATTGCAGTCCATGG+TGG | 0.700069 | 1.3:-17529777 | None:intergenic |
| AGACCGTGAGAAAATCAGGA+GGG | 0.711741 | 1.3:+17528303 | MS.gene25166:CDS |
| CAGACCGTGAGAAAATCAGG+AGG | 0.717963 | 1.3:+17528302 | MS.gene25166:CDS |
| GAAAACACCATCCCTTACTG+CGG | 0.761554 | 1.3:+17528087 | MS.gene25166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATATAAAAAAAACTTT+GGG | - | chr1.3:17529251-17529270 | None:intergenic | 10.0% |
| !! | TAAAATGAAAAATAGTAATT+TGG | + | chr1.3:17529105-17529124 | MS.gene25166:intron | 10.0% |
| !! | TACAAATATAAAAAAAACTT+TGG | - | chr1.3:17529252-17529271 | None:intergenic | 10.0% |
| !! | ATAAAAATAGGGATTATAAT+AGG | + | chr1.3:17528533-17528552 | MS.gene25166:intron | 15.0% |
| !! | ATCTAAATTCAAAAAAAACT+AGG | + | chr1.3:17528991-17529010 | MS.gene25166:intron | 15.0% |
| !! | GTTGATATGATAAAAAAAAA+GGG | - | chr1.3:17528809-17528828 | None:intergenic | 15.0% |
| !! | TCTAAATTCAAAAAAAACTA+GGG | + | chr1.3:17528992-17529011 | MS.gene25166:intron | 15.0% |
| !! | TGTTGATATGATAAAAAAAA+AGG | - | chr1.3:17528810-17528829 | None:intergenic | 15.0% |
| !!! | ACTCATATTTATGATTTTTA+AGG | + | chr1.3:17529186-17529205 | MS.gene25166:intron | 15.0% |
| !!! | AGAATTAAGATTTTCTATAT+CGG | - | chr1.3:17529730-17529749 | None:intergenic | 15.0% |
| !!! | TATTATAATCCCTATTTTTA+TGG | - | chr1.3:17528534-17528553 | None:intergenic | 15.0% |
| !! | AATTGGTTACGATAAAAATA+TGG | + | chr1.3:17529064-17529083 | MS.gene25166:intron | 20.0% |
| !! | CTAAATTCAAAAAAAACTAG+GGG | + | chr1.3:17528993-17529012 | MS.gene25166:intron | 20.0% |
| !! | GTATTTAGGAAAAATATGTT+TGG | + | chr1.3:17528484-17528503 | MS.gene25166:intron | 20.0% |
| !! | GTTAACTTTATAATATTCCT+AGG | + | chr1.3:17528506-17528525 | MS.gene25166:intron | 20.0% |
| !! | TGTAAAACAACAATAATCAA+AGG | - | chr1.3:17529352-17529371 | None:intergenic | 20.0% |
| !! | TGTTCTATGAAAAAAACTAA+GGG | - | chr1.3:17528750-17528769 | None:intergenic | 20.0% |
| !! | TTTACAGTAAATACTCAAAT+TGG | + | chr1.3:17529047-17529066 | MS.gene25166:intron | 20.0% |
| !!! | AAATGATCATTTTCATCAAT+TGG | + | chr1.3:17528333-17528352 | MS.gene25166:CDS | 20.0% |
| !!! | AAGTTATATTTATTGATTCC+CGG | - | chr1.3:17528715-17528734 | None:intergenic | 20.0% |
| !!! | AATGATCATTTTCATCAATT+GGG | + | chr1.3:17528334-17528353 | MS.gene25166:CDS | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+CGG | - | chr1.3:17528652-17528671 | None:intergenic | 20.0% |
| !!! | ATATTTTTCCTAAATACCTT+GGG | - | chr1.3:17528481-17528500 | None:intergenic | 20.0% |
| !!! | GTAAGTTTTTTAATCTTGTT+TGG | + | chr1.3:17528368-17528387 | MS.gene25166:intron | 20.0% |
| ! | AAAAAATTTCCCAAGGAAAA+GGG | - | chr1.3:17528606-17528625 | None:intergenic | 25.0% |
| ! | AACAACTACCATTTCAAATT+TGG | - | chr1.3:17529407-17529426 | None:intergenic | 25.0% |
| ! | AATCAAATGAATAAATGAGC+TGG | - | chr1.3:17529646-17529665 | None:intergenic | 25.0% |
| ! | AGTAAACTTGTAACAAACAT+AGG | + | chr1.3:17528664-17528683 | MS.gene25166:intron | 25.0% |
| ! | AGTTTACCAAATTTATTCCT+AGG | + | chr1.3:17528418-17528437 | MS.gene25166:intron | 25.0% |
| ! | ATTAAGAAAACATTGCAGTA+AGG | + | chr1.3:17528837-17528856 | MS.gene25166:intron | 25.0% |
| ! | ATTCCTTGGAATATAAAGAT+GGG | + | chr1.3:17528447-17528466 | MS.gene25166:intron | 25.0% |
| ! | GTGTTCTATGAAAAAAACTA+AGG | - | chr1.3:17528751-17528770 | None:intergenic | 25.0% |
| ! | GTTATTCCTAGGAATAAATT+TGG | - | chr1.3:17528427-17528446 | None:intergenic | 25.0% |
| ! | TACATTAGTATTAGTGGAAA+GGG | + | chr1.3:17529326-17529345 | MS.gene25166:intron | 25.0% |
| !! | AAGTATTGCCAAATTTGAAA+TGG | + | chr1.3:17529396-17529415 | MS.gene25166:intron | 25.0% |
| !! | AATGTATATTCACACTGATT+TGG | - | chr1.3:17528937-17528956 | None:intergenic | 25.0% |
| !! | CATATTTTTCCTAAATACCT+TGG | - | chr1.3:17528482-17528501 | None:intergenic | 25.0% |
| !! | GTTTACTAAATTTTATTCCC+GGG | - | chr1.3:17528651-17528670 | None:intergenic | 25.0% |
| !! | TATTCCTATCATTTTATTCC+CGG | + | chr1.3:17528693-17528712 | MS.gene25166:intron | 25.0% |
| !!! | AACCACATTTTAAGTTCTTA+AGG | - | chr1.3:17529132-17529151 | None:intergenic | 25.0% |
| !!! | AAGCTTGTTTTGAAAGATTT+AGG | + | chr1.3:17529018-17529037 | MS.gene25166:intron | 25.0% |
| !!! | AATTTTATCCCAAGGTATTT+AGG | + | chr1.3:17528470-17528489 | MS.gene25166:intron | 25.0% |
| !!! | AGTTATATTTATTGATTCCC+GGG | - | chr1.3:17528714-17528733 | None:intergenic | 25.0% |
| !!! | TGTTTTGAAAGATTTAGGTT+TGG | + | chr1.3:17529023-17529042 | MS.gene25166:intron | 25.0% |
| AATATCTTTACGATTGGTGA+TGG | - | chr1.3:17528134-17528153 | None:intergenic | 30.0% | |
| AGGTATAAACGTTATTGTTG+TGG | + | chr1.3:17528157-17528176 | MS.gene25166:intron | 30.0% | |
| ATATACATTGAGGATAGACT+TGG | - | chr1.3:17529933-17529952 | None:intergenic | 30.0% | |
| ATTCCCATCTTTATATTCCA+AGG | - | chr1.3:17528453-17528472 | None:intergenic | 30.0% | |
| CAGGATATGATATCTACAAT+TGG | + | chr1.3:17528879-17528898 | MS.gene25166:intron | 30.0% | |
| CATTCCTTGGAATATAAAGA+TGG | + | chr1.3:17528446-17528465 | MS.gene25166:intron | 30.0% | |
| CTACATTAGTATTAGTGGAA+AGG | + | chr1.3:17529325-17529344 | MS.gene25166:intron | 30.0% | |
| GAAAAAATTTCCCAAGGAAA+AGG | - | chr1.3:17528607-17528626 | None:intergenic | 30.0% | |
| GAACATGAATATCTCAACTA+CGG | - | chr1.3:17529430-17529449 | None:intergenic | 30.0% | |
| GGAATAGAAAAAATTTCCCA+AGG | - | chr1.3:17528613-17528632 | None:intergenic | 30.0% | |
| GTCCTTAAGAACTTAAAATG+TGG | + | chr1.3:17529127-17529146 | MS.gene25166:intron | 30.0% | |
| GTTGACTACATTAGTATTAG+TGG | + | chr1.3:17529320-17529339 | MS.gene25166:intron | 30.0% | |
| TACTAATGTAGTCAACTATG+TGG | - | chr1.3:17529316-17529335 | None:intergenic | 30.0% | |
| TCCTAGGAACCATAAAAATA+GGG | + | chr1.3:17528522-17528541 | MS.gene25166:intron | 30.0% | |
| TGAGAATGGAATATACATTG+AGG | - | chr1.3:17529943-17529962 | None:intergenic | 30.0% | |
| TTCCTAGGAACCATAAAAAT+AGG | + | chr1.3:17528521-17528540 | MS.gene25166:intron | 30.0% | |
| ! | ATATCTTTACGATTGGTGAT+GGG | - | chr1.3:17528133-17528152 | None:intergenic | 30.0% |
| ! | ATTCCTATCATTTTATTCCC+GGG | + | chr1.3:17528694-17528713 | MS.gene25166:intron | 30.0% |
| !! | TTTTAGCACTGAAACAAGTT+TGG | - | chr1.3:17530193-17530212 | None:intergenic | 30.0% |
| AACATTGCAGTAAGGAAAAC+AGG | + | chr1.3:17528845-17528864 | MS.gene25166:intron | 35.0% | |
| AATAAAGTTCCCATGGAGAT+GGG | - | chr1.3:17528579-17528598 | None:intergenic | 35.0% | |
| ACCTTCATTCTGATTTCTGT+AGG | + | chr1.3:17530220-17530239 | MS.gene25166:intron | 35.0% | |
| AGAGACAATTCAAGTGCTAA+AGG | + | chr1.3:17529506-17529525 | MS.gene25166:CDS | 35.0% | |
| AGAGCATAAATCACTTTCTG+AGG | + | chr1.3:17529560-17529579 | MS.gene25166:CDS | 35.0% | |
| ATTCCCGGGAATAAAATGAT+AGG | - | chr1.3:17528700-17528719 | None:intergenic | 35.0% | |
| CATCAATTGGGAAACGTAAT+AGG | + | chr1.3:17528346-17528365 | MS.gene25166:CDS | 35.0% | |
| CCAATCGTAAAGATATTGTC+AGG | + | chr1.3:17528137-17528156 | MS.gene25166:CDS | 35.0% | |
| CCTGACAATATCTTTACGAT+TGG | - | chr1.3:17528140-17528159 | None:intergenic | 35.0% | |
| CTTGTTTGGATTCACACTTA+GGG | + | chr1.3:17528382-17528401 | MS.gene25166:intron | 35.0% | |
| GAATTTATTCCCATCTCCAT+GGG | + | chr1.3:17528567-17528586 | MS.gene25166:intron | 35.0% | |
| TACTATGGAAACCAAAATCC+TGG | + | chr1.3:17529900-17529919 | MS.gene25166:CDS | 35.0% | |
| TAGTAAGGAAAAGGTTGCAT+AGG | - | chr1.3:17529885-17529904 | None:intergenic | 35.0% | |
| TCCTACAGAAATCAGAATGA+AGG | - | chr1.3:17530224-17530243 | None:intergenic | 35.0% | |
| TGAATTTATTCCCATCTCCA+TGG | + | chr1.3:17528566-17528585 | MS.gene25166:intron | 35.0% | |
| TGGTTTCCATAGTAAGGAAA+AGG | - | chr1.3:17529894-17529913 | None:intergenic | 35.0% | |
| TGTTGCTAGAAAAGTTCAGA+AGG | + | chr1.3:17528279-17528298 | MS.gene25166:CDS | 35.0% | |
| TTAAAGACGCTTTCTCTTCT+CGG | - | chr1.3:17529704-17529723 | None:intergenic | 35.0% | |
| TTCCAAGGAATGTTATTCCT+AGG | - | chr1.3:17528438-17528457 | None:intergenic | 35.0% | |
| TTCCTAGGAATAACATTCCT+TGG | + | chr1.3:17528433-17528452 | MS.gene25166:intron | 35.0% | |
| TTGAATTGTCTCTGTGATGA+TGG | - | chr1.3:17529499-17529518 | None:intergenic | 35.0% | |
| TTGCACATCTAGAGGAAAAA+AGG | + | chr1.3:17530244-17530263 | MS.gene25166:CDS | 35.0% | |
| ! | AAGATGGGAATTTTATCCCA+AGG | + | chr1.3:17528462-17528481 | MS.gene25166:intron | 35.0% |
| ! | AGGAAAAAAGGCAAAGCATT+CGG | + | chr1.3:17530256-17530275 | MS.gene25166:CDS | 35.0% |
| ! | ATGCAACCTTTTCCTTACTA+TGG | + | chr1.3:17529885-17529904 | MS.gene25166:CDS | 35.0% |
| ! | TCTTGTTTGGATTCACACTT+AGG | + | chr1.3:17528381-17528400 | MS.gene25166:intron | 35.0% |
| ! | TTGGAATATGACCAGGATTT+TGG | - | chr1.3:17529914-17529933 | None:intergenic | 35.0% |
| !! | ACTTTTCTAGCAACAACACT+TGG | - | chr1.3:17528274-17528293 | None:intergenic | 35.0% |
| !! | AGGACCATTTTTCCATTACT+CGG | + | chr1.3:17529206-17529225 | MS.gene25166:intron | 35.0% |
| !!! | GGATTTTGGTTTCCATAGTA+AGG | - | chr1.3:17529900-17529919 | None:intergenic | 35.0% |
| !!! | GGGAAATTTTTTCTATTCCC+AGG | + | chr1.3:17528614-17528633 | MS.gene25166:intron | 35.0% |
| !!! | TCCCTATTTTTATGGTTCCT+AGG | - | chr1.3:17528526-17528545 | None:intergenic | 35.0% |
| !!! | TTGTTGTTTTGTGTAGAGAG+AGG | + | chr1.3:17528236-17528255 | MS.gene25166:intron | 35.0% |
| AAATTTCCCAAGGAAAAGGG+TGG | - | chr1.3:17528603-17528622 | None:intergenic | 40.0% | |
| AAGGAAAAGGTTGCATAGGT+GGG | - | chr1.3:17529881-17529900 | None:intergenic | 40.0% | |
| AATTTCCCAAGGAAAAGGGT+GGG | - | chr1.3:17528602-17528621 | None:intergenic | 40.0% | |
| ATAAAAAAAAAGGGCCGAGC+TGG | - | chr1.3:17528800-17528819 | None:intergenic | 40.0% | |
| ATAGGAATGGGGTACGTATA+AGG | - | chr1.3:17529822-17529841 | None:intergenic | 40.0% | |
| CTACATCTTTCTGCATCACT+AGG | - | chr1.3:17530074-17530093 | None:intergenic | 40.0% | |
| GAATAAAGTTCCCATGGAGA+TGG | - | chr1.3:17528580-17528599 | None:intergenic | 40.0% | |
| GATAGACTTGGAATATGACC+AGG | - | chr1.3:17529921-17529940 | None:intergenic | 40.0% | |
| TAAGGAAAAGGTTGCATAGG+TGG | - | chr1.3:17529882-17529901 | None:intergenic | 40.0% | |
| TAGGAATGGGGTACGTATAA+GGG | - | chr1.3:17529821-17529840 | None:intergenic | 40.0% | |
| ! | ACTCTTTTCGACTAAACACG+TGG | - | chr1.3:17530019-17530038 | None:intergenic | 40.0% |
| ! | ATTTTTCCATTACTCGGGGT+CGG | + | chr1.3:17529212-17529231 | MS.gene25166:intron | 40.0% |
| ! | CTCTTTTCGACTAAACACGT+GGG | - | chr1.3:17530018-17530037 | None:intergenic | 40.0% |
| ! | TCCCAGGAACATTTTATACC+CGG | + | chr1.3:17528630-17528649 | MS.gene25166:intron | 40.0% |
| ! | TTATTCCCACCCTTTTCCTT+GGG | + | chr1.3:17528594-17528613 | MS.gene25166:intron | 40.0% |
| ! | TTTATTCCCACCCTTTTCCT+TGG | + | chr1.3:17528593-17528612 | MS.gene25166:intron | 40.0% |
| !! | ATTGGCATTGGCATAGGAAT+GGG | - | chr1.3:17529834-17529853 | None:intergenic | 40.0% |
| !! | GACCATTTTTCCATTACTCG+GGG | + | chr1.3:17529208-17529227 | MS.gene25166:intron | 40.0% |
| !! | GGACCATTTTTCCATTACTC+GGG | + | chr1.3:17529207-17529226 | MS.gene25166:intron | 40.0% |
| AGACCGTGAGAAAATCAGGA+GGG | + | chr1.3:17528303-17528322 | MS.gene25166:CDS | 45.0% | |
| AGAGTCTTGAAGCAAGTCAC+CGG | + | chr1.3:17530034-17530053 | MS.gene25166:intron | 45.0% | |
| AGCCAGTATTCTGCATCTCA+GGG | + | chr1.3:17530317-17530336 | MS.gene25166:CDS | 45.0% | |
| ATAGGTGGGTGAATGGAAAC+TGG | - | chr1.3:17529867-17529886 | None:intergenic | 45.0% | |
| ATCTCTATTGGAGGGATAGC+TGG | - | chr1.3:17529969-17529988 | None:intergenic | 45.0% | |
| ATGCAGATCCTGATAGACCA+CGG | + | chr1.3:17529460-17529479 | MS.gene25166:intron | 45.0% | |
| ATGTAGTGTGTCTCCAGATG+TGG | + | chr1.3:17530088-17530107 | MS.gene25166:CDS | 45.0% | |
| CCCGGGTATAAAATGTTCCT+GGG | - | chr1.3:17528634-17528653 | None:intergenic | 45.0% | |
| CTAAACACGTGGGATGTAGA+AGG | - | chr1.3:17530008-17530027 | None:intergenic | 45.0% | |
| CTAGGTCTTCTTCTATGACC+CGG | - | chr1.3:17530056-17530075 | None:intergenic | 45.0% | |
| CTGATGGCATCTCTATTGGA+GGG | - | chr1.3:17529977-17529996 | None:intergenic | 45.0% | |
| CTGTAGGATTGCACATCTAG+AGG | + | chr1.3:17530236-17530255 | MS.gene25166:intron | 45.0% | |
| GAAAACACCATCCCTTACTG+CGG | + | chr1.3:17528087-17528106 | MS.gene25166:CDS | 45.0% | |
| GAATGGTCAATTGCAGTCCA+TGG | - | chr1.3:17529783-17529802 | None:intergenic | 45.0% | |
| GGCTACTCATGACAACAGAA+TGG | - | chr1.3:17529800-17529819 | None:intergenic | 45.0% | |
| GTAGAAGGATACTGAGCTGA+TGG | - | chr1.3:17529993-17530012 | None:intergenic | 45.0% | |
| TCCCGGGTATAAAATGTTCC+TGG | - | chr1.3:17528635-17528654 | None:intergenic | 45.0% | |
| TGAGCTGATGGCATCTCTAT+TGG | - | chr1.3:17529981-17530000 | None:intergenic | 45.0% | |
| TGATAGACCACGGAATGACA+AGG | + | chr1.3:17529470-17529489 | MS.gene25166:CDS | 45.0% | |
| TGATTCTTCTGCCGCAGTAA+GGG | - | chr1.3:17528101-17528120 | None:intergenic | 45.0% | |
| TTGTCATTCCGTGGTCTATC+AGG | - | chr1.3:17529471-17529490 | None:intergenic | 45.0% | |
| ! | AGTAAGGGATGGTGTTTTCG+AGG | - | chr1.3:17528086-17528105 | None:intergenic | 45.0% |
| ! | CCCAGGAACATTTTATACCC+GGG | + | chr1.3:17528631-17528650 | MS.gene25166:intron | 45.0% |
| ! | GACCCCGAGTAATGGAAAAA+TGG | - | chr1.3:17529213-17529232 | None:intergenic | 45.0% |
| ! | GATCCCTCCTGATTTTCTCA+CGG | - | chr1.3:17528309-17528328 | None:intergenic | 45.0% |
| ! | TTTTTCCATTACTCGGGGTC+GGG | + | chr1.3:17529213-17529232 | MS.gene25166:intron | 45.0% |
| !! | ACCTGTTGTGTTGATGATCC+AGG | - | chr1.3:17530137-17530156 | None:intergenic | 45.0% |
| !! | GATTGGCATTGGCATAGGAA+TGG | - | chr1.3:17529835-17529854 | None:intergenic | 45.0% |
| !! | GGTGTTTTCGAGGTGTTTAG+CGG | - | chr1.3:17528076-17528095 | None:intergenic | 45.0% |
| !! | TTGGCATTGGCATAGGAATG+GGG | - | chr1.3:17529833-17529852 | None:intergenic | 45.0% |
| AAAACAGGCAGTCACGAGTC+AGG | + | chr1.3:17528860-17528879 | MS.gene25166:intron | 50.0% | |
| AATTGCAGTCCATGGTGGCA+TGG | - | chr1.3:17529775-17529794 | None:intergenic | 50.0% | |
| AGGCAGACCGTGAGAAAATC+AGG | + | chr1.3:17528299-17528318 | MS.gene25166:CDS | 50.0% | |
| AGGTTGCATAGGTGGGTGAA+TGG | - | chr1.3:17529874-17529893 | None:intergenic | 50.0% | |
| ATGGTTGCCTTGTCATTCCG+TGG | - | chr1.3:17529480-17529499 | None:intergenic | 50.0% | |
| CAGACCGTGAGAAAATCAGG+AGG | + | chr1.3:17528302-17528321 | MS.gene25166:CDS | 50.0% | |
| CTGAGGAGTCACACGAAGTA+AGG | + | chr1.3:17529577-17529596 | MS.gene25166:intron | 50.0% | |
| GAATGGAAACTGGACCAGGA+GGG | - | chr1.3:17529857-17529876 | None:intergenic | 50.0% | |
| GAGCCAGTATTCTGCATCTC+AGG | + | chr1.3:17530316-17530335 | MS.gene25166:CDS | 50.0% | |
| GAGCTTGAGCTTAAGATGCC+TGG | + | chr1.3:17530116-17530135 | MS.gene25166:CDS | 50.0% | |
| GAGTCTTGAAGCAAGTCACC+GGG | + | chr1.3:17530035-17530054 | MS.gene25166:intron | 50.0% | |
| GCCTGGATCATCAACACAAC+AGG | + | chr1.3:17530133-17530152 | MS.gene25166:CDS | 50.0% | |
| GCTGATGGCATCTCTATTGG+AGG | - | chr1.3:17529978-17529997 | None:intergenic | 50.0% | |
| GGGTGGGAATAAAGTTCCCA+TGG | - | chr1.3:17528586-17528605 | None:intergenic | 50.0% | |
| GTCCCTGAGATGCAGAATAC+TGG | - | chr1.3:17530322-17530341 | None:intergenic | 50.0% | |
| GTGATTCTTCTGCCGCAGTA+AGG | - | chr1.3:17528102-17528121 | None:intergenic | 50.0% | |
| GTGTAGAGAGAGGAGTGAGA+TGG | + | chr1.3:17528246-17528265 | MS.gene25166:intron | 50.0% | |
| TCAAGCTCTGTTGCCACATC+TGG | - | chr1.3:17530104-17530123 | None:intergenic | 50.0% | |
| TGAATGGAAACTGGACCAGG+AGG | - | chr1.3:17529858-17529877 | None:intergenic | 50.0% | |
| TGGTCAATTGCAGTCCATGG+TGG | - | chr1.3:17529780-17529799 | None:intergenic | 50.0% | |
| ! | TTTTCCATTACTCGGGGTCG+GGG | + | chr1.3:17529214-17529233 | MS.gene25166:intron | 50.0% |
| !! | GTTTTCGAGGTGTTTAGCGG+CGG | - | chr1.3:17528073-17528092 | None:intergenic | 50.0% |
| !! | TTACGATTGGTGATGGGCAG+CGG | - | chr1.3:17528127-17528146 | None:intergenic | 50.0% |
| ATGCCAATGCCAATCCCTCC+TGG | + | chr1.3:17529840-17529859 | MS.gene25166:CDS | 55.0% | |
| CAGCGTCAGCAACACTCCAA+AGG | + | chr1.3:17530358-17530377 | MS.gene25166:CDS | 55.0% | |
| GAAACTGGACCAGGAGGGAT+TGG | - | chr1.3:17529852-17529871 | None:intergenic | 55.0% | |
| GGGATAGCTGGAGCTGAGAA+TGG | - | chr1.3:17529957-17529976 | None:intergenic | 55.0% | |
| GGGTGAATGGAAACTGGACC+AGG | - | chr1.3:17529861-17529880 | None:intergenic | 55.0% | |
| TCTTCTGCCGCAGTAAGGGA+TGG | - | chr1.3:17528097-17528116 | None:intergenic | 55.0% | |
| !! | GGAGGGATTGGCATTGGCAT+AGG | - | chr1.3:17529840-17529859 | None:intergenic | 55.0% |
| !! | TGGAGTGTTGCTGACGCTGT+TGG | - | chr1.3:17530357-17530376 | None:intergenic | 55.0% |
| ACGAGCTGTGCAAGCCAGCT+CGG | + | chr1.3:17528783-17528802 | MS.gene25166:intron | 60.0% | |
| GAGTCAGAGCCATGCCACCA+TGG | + | chr1.3:17529763-17529782 | MS.gene25166:CDS | 60.0% | |
| TTGTCCCCGACCCCGAGTAA+TGG | - | chr1.3:17529221-17529240 | None:intergenic | 60.0% | |
| ! | CTGGCTTGCACAGCTCGTAG+TGG | - | chr1.3:17528781-17528800 | None:intergenic | 60.0% |
| ! | GGACCAGGAGGGATTGGCAT+TGG | - | chr1.3:17529846-17529865 | None:intergenic | 60.0% |
| ! | TTCGAGGTGTTTAGCGGCGG+AGG | - | chr1.3:17528070-17528089 | None:intergenic | 60.0% |
| !! | GCATGGCTCTGACTCTCTGC+TGG | - | chr1.3:17529758-17529777 | None:intergenic | 60.0% |
| TGTTTAGCGGCGGAGGCGGT+GGG | - | chr1.3:17528063-17528082 | None:intergenic | 65.0% | |
| ! | GAGGTGTTTAGCGGCGGAGG+CGG | - | chr1.3:17528067-17528086 | None:intergenic | 65.0% |
| !! | CGATTGGTGATGGGCAGCGG+AGG | - | chr1.3:17528124-17528143 | None:intergenic | 65.0% |
| GTGTTTAGCGGCGGAGGCGG+TGG | - | chr1.3:17528064-17528083 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17528043 | 17530388 | 17528043 | ID=MS.gene25166 |
| chr1.3 | mRNA | 17528043 | 17530388 | 17528043 | ID=MS.gene25166.t1;Parent=MS.gene25166 |
| chr1.3 | exon | 17528043 | 17528158 | 17528043 | ID=MS.gene25166.t1.exon1;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17528043 | 17528158 | 17528043 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| chr1.3 | exon | 17528252 | 17528367 | 17528252 | ID=MS.gene25166.t1.exon2;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17528252 | 17528367 | 17528252 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| chr1.3 | exon | 17529466 | 17529593 | 17529466 | ID=MS.gene25166.t1.exon3;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17529466 | 17529593 | 17529466 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| chr1.3 | exon | 17529678 | 17530019 | 17529678 | ID=MS.gene25166.t1.exon4;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17529678 | 17530019 | 17529678 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| chr1.3 | exon | 17530050 | 17530154 | 17530050 | ID=MS.gene25166.t1.exon5;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17530050 | 17530154 | 17530050 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| chr1.3 | exon | 17530242 | 17530388 | 17530242 | ID=MS.gene25166.t1.exon6;Parent=MS.gene25166.t1 |
| chr1.3 | CDS | 17530242 | 17530388 | 17530242 | ID=cds.MS.gene25166.t1;Parent=MS.gene25166.t1 |
| Gene Sequence |
| Protein sequence |
