Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25251.t1 | XP_024639353.1 | 85.5 | 131 | 19 | 0 | 98 | 228 | 1 | 131 | 2.00E-61 | 245.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25251.t1 | G7JX45 | 88.2 | 85 | 10 | 0 | 144 | 228 | 25 | 109 | 2.9e-38 | 168.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene25251.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25251.t1 | MTR_5g053510 | 88.235 | 85 | 10 | 0 | 144 | 228 | 25 | 109 | 1.18e-50 | 160 |
MS.gene25251.t1 | MTR_4g123470 | 34.314 | 204 | 124 | 5 | 11 | 211 | 14 | 210 | 2.67e-30 | 112 |
MS.gene25251.t1 | MTR_1g054495 | 27.876 | 226 | 156 | 6 | 1 | 225 | 1 | 220 | 7.03e-25 | 98.2 |
MS.gene25251.t1 | MTR_0014s0220 | 30.631 | 222 | 131 | 7 | 5 | 225 | 623 | 822 | 3.16e-23 | 97.8 |
MS.gene25251.t1 | MTR_4g053550 | 52.113 | 71 | 33 | 1 | 24 | 93 | 47 | 117 | 1.51e-19 | 81.3 |
MS.gene25251.t1 | MTR_4g085790 | 28.000 | 225 | 155 | 5 | 1 | 224 | 1 | 219 | 1.53e-19 | 84.0 |
MS.gene25251.t1 | MTR_7g025150 | 28.000 | 225 | 155 | 5 | 1 | 224 | 1 | 219 | 4.87e-19 | 82.8 |
MS.gene25251.t1 | MTR_1g041870 | 32.778 | 180 | 104 | 5 | 49 | 228 | 13 | 175 | 1.36e-16 | 75.1 |
MS.gene25251.t1 | MTR_1g054485 | 31.343 | 134 | 89 | 3 | 1 | 133 | 1 | 132 | 1.15e-14 | 70.1 |
MS.gene25251.t1 | MTR_7g039210 | 21.212 | 231 | 152 | 5 | 1 | 203 | 1 | 229 | 7.04e-12 | 63.5 |
MS.gene25251.t1 | MTR_4g069750 | 29.897 | 97 | 67 | 1 | 1 | 96 | 1 | 97 | 8.82e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 40 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGAATTCTTCAAGAAATTT+TGG | 0.074446 | 8.2:-7402457 | None:intergenic |
CAGACTTCAATGATTTCTTA+TGG | 0.226332 | 8.2:+7402904 | MS.gene25251:CDS |
AATGTAACTTTCAACAATTC+AGG | 0.262321 | 8.2:+7402529 | MS.gene25251:CDS |
GATTTGCATTGCAGAGAAAA+AGG | 0.315663 | 8.2:-7402944 | None:intergenic |
TGTACTCAAACGACAAGTTT+TGG | 0.321936 | 8.2:+7402257 | MS.gene25251:CDS |
TGGAATCTGATAGATGTTAA+TGG | 0.336468 | 8.2:+7402496 | MS.gene25251:CDS |
TCGATGATTTGAAACCAGTT+TGG | 0.373591 | 8.2:+7402476 | MS.gene25251:CDS |
AACGAATAGTGTCTCCAATC+TGG | 0.387174 | 8.2:-7403070 | None:intergenic |
AGACTTCAATGATTTCTTAT+GGG | 0.387413 | 8.2:+7402905 | MS.gene25251:CDS |
AATATATACAAAACCTGATC+TGG | 0.390568 | 8.2:-7402303 | None:intergenic |
AAATAAAATGATTTGCGGTT+CGG | 0.410181 | 8.2:-7402727 | None:intergenic |
AACTGTACATCTTCCAGATC+AGG | 0.417936 | 8.2:+7402290 | MS.gene25251:CDS |
TATTCAGCGATTCATTGCTT+TGG | 0.421950 | 8.2:-7403001 | None:intergenic |
GATGGCAGAAAGATCTGAAT+TGG | 0.422050 | 8.2:+7402774 | MS.gene25251:CDS |
GCTGTAACAAACTCTTCATT+CGG | 0.423810 | 8.2:-7402966 | None:intergenic |
CTCTTTCCACTTCAAATGGC+TGG | 0.424705 | 8.2:+7402225 | None:intergenic |
AGCCGATTCATACTAACTCT+TGG | 0.438013 | 8.2:+7402646 | MS.gene25251:CDS |
TCCATCCTGTAGTGAGTAAA+GGG | 0.439850 | 8.2:-7402558 | None:intergenic |
TTCCAAGAGTTAGTATGAAT+CGG | 0.446733 | 8.2:-7402648 | None:intergenic |
CATAAGAAATCATTGAAGTC+TGG | 0.456714 | 8.2:-7402903 | None:intergenic |
TTTGTCTGATGCCTTCGAAA+TGG | 0.461961 | 8.2:-7402600 | None:intergenic |
TGCTTCTGCTGTGGAAGGGA+GGG | 0.473215 | 8.2:-7402696 | None:intergenic |
AAATCGTGCTAAACTATGTT+GGG | 0.473587 | 8.2:+7402620 | MS.gene25251:CDS |
TGTCAAAATAAAATGATTTG+CGG | 0.475450 | 8.2:-7402732 | None:intergenic |
ACATCTATCAGATTCCAAAC+TGG | 0.476477 | 8.2:-7402490 | None:intergenic |
CAAATCGTGCTAAACTATGT+TGG | 0.476784 | 8.2:+7402619 | MS.gene25251:CDS |
TTCCTATAGACATGAACAAA+AGG | 0.483981 | 8.2:-7403119 | None:intergenic |
ATTCGTTTCAAGTTCTTCGA+TGG | 0.500169 | 8.2:+7403086 | MS.gene25251:CDS |
TTCGTTTCAAGTTCTTCGAT+GGG | 0.505866 | 8.2:+7403087 | MS.gene25251:CDS |
AACAACAATGCATTCCAGAT+TGG | 0.510902 | 8.2:+7403056 | MS.gene25251:CDS |
ATCCTCCCTTTACTCACTAC+AGG | 0.520199 | 8.2:+7402553 | MS.gene25251:CDS |
GTCCATCCTGTAGTGAGTAA+AGG | 0.525188 | 8.2:-7402559 | None:intergenic |
CACTTTGACTCATTTGCAGA+TGG | 0.525652 | 8.2:+7402756 | MS.gene25251:CDS |
GTGCTTCTGCTGTGGAAGGG+AGG | 0.535843 | 8.2:-7402697 | None:intergenic |
TTTGTGCTTCTGCTGTGGAA+GGG | 0.552787 | 8.2:-7402700 | None:intergenic |
GATTCATACTAACTCTTGGA+AGG | 0.611155 | 8.2:+7402650 | MS.gene25251:CDS |
TCCCTTTACTCACTACAGGA+TGG | 0.611661 | 8.2:+7402557 | MS.gene25251:CDS |
AAGAAATCATTGAAGTCTGG+TGG | 0.620565 | 8.2:-7402900 | None:intergenic |
GAAGGGAGGGAATTCATCAG+TGG | 0.689324 | 8.2:-7402683 | None:intergenic |
ATCCTGTAGTGAGTAAAGGG+AGG | 0.695428 | 8.2:-7402555 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTATTAAGTTTACAAAC+AGG | - | chr8.2:7402372-7402391 | None:intergenic | 15.0% |
!! | TATTATTAAGTTTACAAACA+GGG | - | chr8.2:7402371-7402390 | None:intergenic | 15.0% |
!!! | AAAATTGGTTTTTGTTAAAT+TGG | - | chr8.2:7402863-7402882 | None:intergenic | 15.0% |
!! | ATACTAAGTTAAAAAATGGT+TGG | + | chr8.2:7403021-7403040 | MS.gene25251:CDS | 20.0% |
!! | CTGAATACTAAGTTAAAAAA+TGG | + | chr8.2:7403017-7403036 | MS.gene25251:CDS | 20.0% |
!! | TACTAAGTTAAAAAATGGTT+GGG | + | chr8.2:7403022-7403041 | MS.gene25251:CDS | 20.0% |
!! | TGTCAAAATAAAATGATTTG+CGG | - | chr8.2:7402735-7402754 | None:intergenic | 20.0% |
! | AATATATACAAAACCTGATC+TGG | - | chr8.2:7402306-7402325 | None:intergenic | 25.0% |
! | AATGTAACTTTCAACAATTC+AGG | + | chr8.2:7402529-7402548 | MS.gene25251:CDS | 25.0% |
! | AGACTTCAATGATTTCTTAT+GGG | + | chr8.2:7402905-7402924 | MS.gene25251:CDS | 25.0% |
!! | AAACCAATTTTGCAAATTAC+AGG | + | chr8.2:7402872-7402891 | MS.gene25251:intron | 25.0% |
!! | AAATAAAATGATTTGCGGTT+CGG | - | chr8.2:7402730-7402749 | None:intergenic | 25.0% |
!! | CGAATTCTTCAAGAAATTTT+GGG | - | chr8.2:7402459-7402478 | None:intergenic | 25.0% |
!! | TAAATGTTGATTATGTGTAC+AGG | + | chr8.2:7402417-7402436 | MS.gene25251:intron | 25.0% |
!! | TCGAATTCTTCAAGAAATTT+TGG | - | chr8.2:7402460-7402479 | None:intergenic | 25.0% |
AAATCGTGCTAAACTATGTT+GGG | + | chr8.2:7402620-7402639 | MS.gene25251:CDS | 30.0% | |
ACATAGTTTGGTTAGAAAAC+AGG | - | chr8.2:7402831-7402850 | None:intergenic | 30.0% | |
ATCAGATAAAAAACAGCAGT+TGG | - | chr8.2:7402337-7402356 | None:intergenic | 30.0% | |
CAGACTTCAATGATTTCTTA+TGG | + | chr8.2:7402904-7402923 | MS.gene25251:CDS | 30.0% | |
CATAAGAAATCATTGAAGTC+TGG | - | chr8.2:7402906-7402925 | None:intergenic | 30.0% | |
TGGAATCTGATAGATGTTAA+TGG | + | chr8.2:7402496-7402515 | MS.gene25251:CDS | 30.0% | |
TGGTGAAAAAACACATAGTT+TGG | - | chr8.2:7402843-7402862 | None:intergenic | 30.0% | |
TTCCAAGAGTTAGTATGAAT+CGG | - | chr8.2:7402651-7402670 | None:intergenic | 30.0% | |
TTCCTATAGACATGAACAAA+AGG | - | chr8.2:7403122-7403141 | None:intergenic | 30.0% | |
! | AGAGATTTTTACCATTTCGA+AGG | + | chr8.2:7402589-7402608 | MS.gene25251:CDS | 30.0% |
! | GAACCTGTAATTTGCAAAAT+TGG | - | chr8.2:7402878-7402897 | None:intergenic | 30.0% |
!!! | AAGAAATTTTGGGTTCACTT+CGG | - | chr8.2:7402449-7402468 | None:intergenic | 30.0% |
AACAACAATGCATTCCAGAT+TGG | + | chr8.2:7403056-7403075 | MS.gene25251:CDS | 35.0% | |
AAGAAATCATTGAAGTCTGG+TGG | - | chr8.2:7402903-7402922 | None:intergenic | 35.0% | |
ACATCTATCAGATTCCAAAC+TGG | - | chr8.2:7402493-7402512 | None:intergenic | 35.0% | |
CAAATCGTGCTAAACTATGT+TGG | + | chr8.2:7402619-7402638 | MS.gene25251:CDS | 35.0% | |
GATTCATACTAACTCTTGGA+AGG | + | chr8.2:7402650-7402669 | MS.gene25251:CDS | 35.0% | |
GATTTGCATTGCAGAGAAAA+AGG | - | chr8.2:7402947-7402966 | None:intergenic | 35.0% | |
GCTGTAACAAACTCTTCATT+CGG | - | chr8.2:7402969-7402988 | None:intergenic | 35.0% | |
TATTCAGCGATTCATTGCTT+TGG | - | chr8.2:7403004-7403023 | None:intergenic | 35.0% | |
! | CTCCTTTTGTTCATGTCTAT+AGG | + | chr8.2:7403117-7403136 | MS.gene25251:CDS | 35.0% |
! | GTACTCAAACGACAAGTTTT+GGG | + | chr8.2:7402258-7402277 | MS.gene25251:CDS | 35.0% |
! | TCGATGATTTGAAACCAGTT+TGG | + | chr8.2:7402476-7402495 | MS.gene25251:CDS | 35.0% |
! | TGTACTCAAACGACAAGTTT+TGG | + | chr8.2:7402257-7402276 | MS.gene25251:CDS | 35.0% |
!! | ATTCGTTTCAAGTTCTTCGA+TGG | + | chr8.2:7403086-7403105 | MS.gene25251:CDS | 35.0% |
!! | TTCGTTTCAAGTTCTTCGAT+GGG | + | chr8.2:7403087-7403106 | MS.gene25251:CDS | 35.0% |
AACGAATAGTGTCTCCAATC+TGG | - | chr8.2:7403073-7403092 | None:intergenic | 40.0% | |
AACTGTACATCTTCCAGATC+AGG | + | chr8.2:7402290-7402309 | MS.gene25251:CDS | 40.0% | |
CACTTTGACTCATTTGCAGA+TGG | + | chr8.2:7402756-7402775 | MS.gene25251:CDS | 40.0% | |
GATGGCAGAAAGATCTGAAT+TGG | + | chr8.2:7402774-7402793 | MS.gene25251:CDS | 40.0% | |
TCCATCCTGTAGTGAGTAAA+GGG | - | chr8.2:7402561-7402580 | None:intergenic | 40.0% | |
TTTGTCTGATGCCTTCGAAA+TGG | - | chr8.2:7402603-7402622 | None:intergenic | 40.0% | |
! | AGCCGATTCATACTAACTCT+TGG | + | chr8.2:7402646-7402665 | MS.gene25251:CDS | 40.0% |
ATCCTCCCTTTACTCACTAC+AGG | + | chr8.2:7402553-7402572 | MS.gene25251:CDS | 45.0% | |
ATCCTGTAGTGAGTAAAGGG+AGG | - | chr8.2:7402558-7402577 | None:intergenic | 45.0% | |
GTCCATCCTGTAGTGAGTAA+AGG | - | chr8.2:7402562-7402581 | None:intergenic | 45.0% | |
TCCCTTTACTCACTACAGGA+TGG | + | chr8.2:7402557-7402576 | MS.gene25251:CDS | 45.0% | |
TTTGTGCTTCTGCTGTGGAA+GGG | - | chr8.2:7402703-7402722 | None:intergenic | 45.0% | |
! | TTTTGTGCTTCTGCTGTGGA+AGG | - | chr8.2:7402704-7402723 | None:intergenic | 45.0% |
!!! | CTCAAACGACAAGTTTTGGG+AGG | + | chr8.2:7402261-7402280 | MS.gene25251:CDS | 45.0% |
!!! | GTAGTTTTGTGCTTCTGCTG+TGG | - | chr8.2:7402708-7402727 | None:intergenic | 45.0% |
GAAGGGAGGGAATTCATCAG+TGG | - | chr8.2:7402686-7402705 | None:intergenic | 50.0% | |
TGCTTCTGCTGTGGAAGGGA+GGG | - | chr8.2:7402699-7402718 | None:intergenic | 55.0% | |
GTGCTTCTGCTGTGGAAGGG+AGG | - | chr8.2:7402700-7402719 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 7402240 | 7403151 | 7402240 | ID=MS.gene25251 |
chr8.2 | mRNA | 7402240 | 7403151 | 7402240 | ID=MS.gene25251.t1;Parent=MS.gene25251 |
chr8.2 | exon | 7402240 | 7402311 | 7402240 | ID=MS.gene25251.t1.exon1;Parent=MS.gene25251.t1 |
chr8.2 | CDS | 7402240 | 7402311 | 7402240 | ID=cds.MS.gene25251.t1;Parent=MS.gene25251.t1 |
chr8.2 | exon | 7402439 | 7402795 | 7402439 | ID=MS.gene25251.t1.exon2;Parent=MS.gene25251.t1 |
chr8.2 | CDS | 7402439 | 7402795 | 7402439 | ID=cds.MS.gene25251.t1;Parent=MS.gene25251.t1 |
chr8.2 | exon | 7402894 | 7403151 | 7402894 | ID=MS.gene25251.t1.exon3;Parent=MS.gene25251.t1 |
chr8.2 | CDS | 7402894 | 7403151 | 7402894 | ID=cds.MS.gene25251.t1;Parent=MS.gene25251.t1 |
Gene Sequence |
Protein sequence |