AlfalfaGEDB | MS.gene25301

M. sativa cultivar XinJiangDaYe / MS.gene25301

KEGG: K06062
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25301.t1	XP_003628592.1	91.7	181	15	0	1	181	141	321	5.80E-96	360.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25301.t1	Q338B9	74.3	183	41	4	1	181	208	386	1.5e-76	287.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25301.t1	G7LEM3	91.7	181	15	0	1	181	141	321	4.2e-96	360.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25301.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25301.t1	MTR_8g062330	91.713	181	15	0	1	181	141	321	9.28e-125	358
MS.gene25301.t1	MTR_7g096040	76.374	182	38	4	1	181	239	416	2.28e-97	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25301.t1	AT3G54610	71.585	183	46	4	1	181	264	442	6.08e-92	279

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Find 40 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTATAAGGAAGCTT+TGG	0.423435	8.2:-38247422	None:intergenic
ACGCCTCCAACAACGCGATT+AGG	0.512140	8.2:-38247116	None:intergenic
AGAATTGTTGATGACATCCC+TGG	0.521290	8.2:+38247572	MS.gene25301:CDS
AGGGAGCCTAATCGCGTTGT+TGG	0.448678	8.2:+38247110	MS.gene25301:CDS
AGTGATGATCAACAAGTAAA+AGG	0.317455	8.2:+38247194	MS.gene25301:CDS
ATAAGTCTATAATGGTTATA+AGG	0.249320	8.2:+38247090	None:intergenic
ATAGTGCCTGTCTTTGCCGA+CGG	0.594963	8.2:-38247457	None:intergenic
ATAGTTGATAAATCAGTATA+AGG	0.397900	8.2:-38247431	None:intergenic
ATCCAGCCTCTTTCAAACCA+GGG	0.635327	8.2:-38247589	None:intergenic
ATCCCTGGTTTGAAAGAGGC+TGG	0.505140	8.2:+38247587	MS.gene25301:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAGTATAAGGAAGCTT+TGG	-	chr8.2:38247425-38247444	None:intergenic	30.0%
AGTGATGATCAACAAGTAAA+AGG	+	chr8.2:38247194-38247213	MS.gene25301:CDS	30.0%
ATTTACAAGAGAGATTCACT+TGG	+	chr8.2:38247331-38247350	MS.gene25301:CDS	30.0%
ATTTATCAACTATGATCCGT+CGG	+	chr8.2:38247441-38247460	MS.gene25301:CDS	30.0%
GATCAACAAGTAAAAGGTTA+TGG	+	chr8.2:38247200-38247219	MS.gene25301:CDS	30.0%
TGTCACAATATTGTTTATCC+TGG	+	chr8.2:38247506-38247525	MS.gene25301:CDS	30.0%
ATCGTCCATATGCAAATCAA+AGG	+	chr8.2:38247144-38247163	MS.gene25301:CDS	35.0%
TCGATGGGAAGGTTATATAA+AGG	+	chr8.2:38247361-38247380	MS.gene25301:CDS	35.0%
CTCTTCTGAACATCAATTCC+AGG	-	chr8.2:38247527-38247546	None:intergenic	40.0%
ATCCAGCCTCTTTCAAACCA+GGG	-	chr8.2:38247592-38247611	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	38247095	38247639	38247095	ID=MS.gene25301
chr8.2	mRNA	38247095	38247639	38247095	ID=MS.gene25301.t1;Parent=MS.gene25301
chr8.2	exon	38247095	38247639	38247095	ID=MS.gene25301.t1.exon1;Parent=MS.gene25301.t1
chr8.2	CDS	38247095	38247639	38247095	ID=cds.MS.gene25301.t1;Parent=MS.gene25301.t1

Gene Sequence

>MS.gene25301

TCTATAATGGTTATAAGGGAGCCTAATCGCGTTGTTGGAGGCGTTACATATCGTCCATATGCAAATCAAAGGTTCGCTGAGATAGCTTTTTGTGCAATTAGTGATGATCAACAAGTAAAAGGTTATGGTACTAGATTGATGAATCACTTGAAACAGTATGCACGTGATGTAGATGGACTAACACACTTTCTCACGTATGCTGATAATAATGCTATTGGCTATTTCATCAAACAAGGATTTACAAGAGAGATTCACTTGGAGAGAGATCGATGGGAAGGTTATATAAAGGATTATGATGGGGGAACTCTCATGGAATGTGAGATTGATCCAAAGCTTCCTTATACTGATTTATCAACTATGATCCGTCGGCAAAGACAGGCACTATATGAAAAGATTAGAGAACTATCTAACTGTCACAATATTGTTTATCCTGGAATTGATGTTCAGAAGAGATCAGAAGCTGCAGGTTTTCCTAATAGAATTGTTGATGACATCCCTGGTTTGAAAGAGGCTGGATGGACTCCTGATATGTACGGTCATTCGCG

Protein sequence

>MS.gene25301.t1

SIMVIREPNRVVGGVTYRPYANQRFAEIAFCAISDDQQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAIGYFIKQGFTREIHLERDRWEGYIKDYDGGTLMECEIDPKLPYTDLSTMIRRQRQALYEKIRELSNCHNIVYPGIDVQKRSEAAGFPNRIVDDIPGLKEAGWTPDMYGHS