Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25392.t1 | XP_013445809.1 | 84.2 | 279 | 41 | 1 | 1 | 279 | 1 | 276 | 2.30E-107 | 398.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25392.t1 | Q9LFQ3 | 41.3 | 104 | 54 | 1 | 164 | 267 | 304 | 400 | 1.3e-13 | 78.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25392.t1 | A0A072U246 | 84.2 | 279 | 41 | 1 | 1 | 279 | 1 | 276 | 1.7e-107 | 398.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene25392.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25392.t1 | MTR_8g469180 | 84.229 | 279 | 41 | 1 | 1 | 279 | 1 | 276 | 3.79e-171 | 474 |
MS.gene25392.t1 | MTR_8g062700 | 53.933 | 89 | 41 | 0 | 193 | 281 | 332 | 420 | 1.92e-23 | 100 |
MS.gene25392.t1 | MTR_8g062700 | 34.392 | 189 | 92 | 3 | 36 | 192 | 227 | 415 | 7.50e-23 | 98.6 |
MS.gene25392.t1 | MTR_8g062700 | 64.384 | 73 | 26 | 0 | 193 | 265 | 332 | 404 | 4.07e-22 | 96.7 |
MS.gene25392.t1 | MTR_8g062700 | 33.862 | 189 | 92 | 4 | 36 | 192 | 227 | 414 | 1.05e-20 | 92.4 |
MS.gene25392.t1 | MTR_6g008970 | 46.237 | 93 | 50 | 0 | 187 | 279 | 332 | 424 | 5.79e-19 | 87.4 |
MS.gene25392.t1 | MTR_6g008970 | 47.561 | 82 | 43 | 0 | 111 | 192 | 340 | 421 | 4.18e-17 | 81.6 |
MS.gene25392.t1 | MTR_5g036670 | 50.000 | 86 | 41 | 1 | 195 | 278 | 320 | 405 | 5.81e-19 | 87.4 |
MS.gene25392.t1 | MTR_5g036670 | 50.000 | 78 | 36 | 2 | 118 | 192 | 327 | 404 | 1.54e-13 | 71.2 |
MS.gene25392.t1 | MTR_6g008995 | 38.255 | 149 | 54 | 3 | 79 | 189 | 197 | 345 | 8.00e-19 | 86.3 |
MS.gene25392.t1 | MTR_6g008995 | 51.351 | 74 | 36 | 0 | 198 | 271 | 270 | 343 | 1.66e-17 | 82.4 |
MS.gene25392.t1 | MTR_6g008995 | 38.255 | 149 | 54 | 3 | 79 | 189 | 140 | 288 | 8.45e-19 | 85.9 |
MS.gene25392.t1 | MTR_6g008995 | 51.351 | 74 | 36 | 0 | 198 | 271 | 213 | 286 | 2.40e-17 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25392.t1 | AT5G15020 | 29.703 | 202 | 108 | 5 | 68 | 269 | 235 | 402 | 1.89e-16 | 79.7 |
MS.gene25392.t1 | AT5G15020 | 42.045 | 88 | 49 | 1 | 111 | 196 | 328 | 415 | 3.82e-14 | 73.2 |
MS.gene25392.t1 | AT5G15020 | 29.703 | 202 | 108 | 5 | 68 | 269 | 235 | 402 | 2.01e-16 | 79.7 |
MS.gene25392.t1 | AT5G15020 | 42.045 | 88 | 49 | 1 | 111 | 196 | 328 | 415 | 3.95e-14 | 73.2 |
MS.gene25392.t1 | AT1G24190 | 31.651 | 218 | 116 | 8 | 69 | 280 | 178 | 368 | 8.93e-16 | 77.8 |
MS.gene25392.t1 | AT1G24190 | 31.651 | 218 | 116 | 8 | 69 | 280 | 178 | 368 | 1.06e-15 | 77.8 |
MS.gene25392.t1 | AT3G01320 | 44.706 | 85 | 47 | 0 | 180 | 264 | 317 | 401 | 1.08e-15 | 77.8 |
MS.gene25392.t1 | AT3G01320 | 40.385 | 104 | 58 | 3 | 111 | 211 | 332 | 434 | 6.72e-14 | 72.4 |
MS.gene25392.t1 | AT3G01320 | 52.174 | 69 | 33 | 0 | 196 | 264 | 321 | 389 | 1.47e-15 | 77.4 |
MS.gene25392.t1 | AT3G01320 | 38.393 | 112 | 65 | 3 | 103 | 211 | 312 | 422 | 6.40e-14 | 72.4 |
MS.gene25392.t1 | AT1G24190 | 32.692 | 208 | 107 | 8 | 69 | 270 | 178 | 358 | 2.77e-15 | 76.3 |
MS.gene25392.t1 | AT1G24190 | 41.772 | 79 | 45 | 1 | 115 | 193 | 288 | 365 | 4.88e-13 | 69.7 |
MS.gene25392.t1 | AT1G70060 | 42.169 | 83 | 47 | 1 | 198 | 280 | 303 | 384 | 1.91e-14 | 73.9 |
MS.gene25392.t1 | AT1G70060 | 42.169 | 83 | 47 | 1 | 198 | 280 | 303 | 384 | 1.91e-14 | 73.9 |
Find 57 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACAGGTGTATGATTTAT+TGG | 0.150948 | 8.2:-40010945 | MS.gene25392:intron |
CCGAGAGGAATTACAATTAT+TGG | 0.178616 | 8.2:-40011391 | MS.gene25392:intron |
ATCAAACCTTTGTTAATTTC+TGG | 0.213353 | 8.2:+40017410 | None:intergenic |
ATCAAACCTTTGTTAAATTC+TGG | 0.224271 | 8.2:+40017518 | None:intergenic |
GTCAGCAGCTTCATTATCTT+TGG | 0.238299 | 8.2:+40019206 | None:intergenic |
GGGAAAATATACCGATCTTA+TGG | 0.254179 | 8.2:-40010924 | MS.gene25392:CDS |
AAACAATCCTGAAAATTATC+AGG | 0.286860 | 8.2:-40011457 | MS.gene25392:CDS |
CTTCAAGGCTTTAACAAGTA+TGG | 0.302654 | 8.2:+40010859 | None:intergenic |
AGTAGACATCGTGGGGCGTT+TGG | 0.342928 | 8.2:+40019170 | None:intergenic |
CAACAGGTGTATGATTTATT+GGG | 0.346970 | 8.2:-40010944 | MS.gene25392:intron |
GTAGACATCGTGGGGCGTTT+GGG | 0.348314 | 8.2:+40019171 | None:intergenic |
TTGCAAATCGTTGGCCTTCT+CGG | 0.356912 | 8.2:+40017574 | None:intergenic |
CCTTTGTTAATTTCTGGATC+AGG | 0.378179 | 8.2:+40017416 | None:intergenic |
AAAGATTTGACGACCCTTCA+AGG | 0.382345 | 8.2:+40010844 | None:intergenic |
CATACTTGTTAAAGCCTTGA+AGG | 0.408957 | 8.2:-40010858 | MS.gene25392:CDS |
GGAAAATATACCGATCTTAT+GGG | 0.409782 | 8.2:-40010923 | MS.gene25392:CDS |
TTCATTAGGAATTTGTTTGT+CGG | 0.419300 | 8.2:-40017605 | MS.gene25392:intron |
ACCTCTCCGTGACTTTGTTA+AGG | 0.425146 | 8.2:+40017221 | None:intergenic |
CTTTCAGATAGGCGATTTGT+TGG | 0.441089 | 8.2:-40012461 | MS.gene25392:intron |
TTCCCATTCTGTAGCTATGT+AGG | 0.447539 | 8.2:+40017161 | None:intergenic |
TCCCATTCTGTAGCTATGTA+GGG | 0.475220 | 8.2:+40017162 | None:intergenic |
TTCTTGAAACAGAAATGAAA+AGG | 0.481600 | 8.2:-40019230 | None:intergenic |
AAGGGTCGTCAAATCTTTCA+CGG | 0.481860 | 8.2:-40010839 | MS.gene25392:CDS |
GTCCCTACATAGCTACAGAA+TGG | 0.496961 | 8.2:-40017164 | MS.gene25392:CDS |
TTTCAGATAGGCGATTTGTT+GGG | 0.503365 | 8.2:-40012460 | MS.gene25392:intron |
CATGACACAAAGTGAAAAGA+AGG | 0.508610 | 8.2:-40010885 | MS.gene25392:CDS |
CCAATAATTGTAATTCCTCT+CGG | 0.508805 | 8.2:+40011391 | None:intergenic |
AACAAAGTCACGGAGAGGTT+AGG | 0.509807 | 8.2:-40017217 | MS.gene25392:CDS |
TCCCTACATAGCTACAGAAT+GGG | 0.512003 | 8.2:-40017163 | MS.gene25392:CDS |
CAATAATTGTAATTCCTCTC+GGG | 0.513671 | 8.2:+40011392 | None:intergenic |
AAGGTAAGAAAATGCTTCAC+TGG | 0.513839 | 8.2:+40017240 | None:intergenic |
AGGTTTGATGAGTGCAAATG+AGG | 0.530693 | 8.2:-40017396 | MS.gene25392:CDS |
TTTGCTGTCTCAGGTATGTA+CGG | 0.535891 | 8.2:-40011528 | MS.gene25392:intron |
ATGATCACCTTGCAAATCGT+TGG | 0.554360 | 8.2:+40017565 | None:intergenic |
ATTAAATTCGCCCATAAGAT+CGG | 0.555210 | 8.2:+40010913 | None:intergenic |
CTGTCTCAGGTATGTACGGT+TGG | 0.555352 | 8.2:-40011524 | MS.gene25392:intron |
AGGGTCGTCAAATCTTTCAC+GGG | 0.558930 | 8.2:-40010838 | MS.gene25392:CDS |
TTCTTACCTTAACAAAGTCA+CGG | 0.564749 | 8.2:-40017227 | MS.gene25392:CDS |
TTGACACAATGTGAATCCAA+TGG | 0.569616 | 8.2:-40012400 | MS.gene25392:intron |
CTTGATCCAGAATTTAACAA+AGG | 0.573154 | 8.2:-40017524 | MS.gene25392:CDS |
GGGAAAACATTCTGATCTTG+TGG | 0.578356 | 8.2:-40012440 | MS.gene25392:CDS |
TCTTGTGTAGTAGACATCGT+GGG | 0.582235 | 8.2:+40019162 | None:intergenic |
ATACTTGTTAAAGCCTTGAA+GGG | 0.587869 | 8.2:-40010857 | MS.gene25392:CDS |
AAACATTCTGATCTTGTGGA+GGG | 0.596716 | 8.2:-40012436 | MS.gene25392:CDS |
CAAAGGTTTGATAAGTGCAG+AGG | 0.606415 | 8.2:-40017507 | MS.gene25392:CDS |
CCTGATCCAGAAATTAACAA+AGG | 0.616646 | 8.2:-40017416 | MS.gene25392:CDS |
AAGACAAGAACTACAAACAA+TGG | 0.616882 | 8.2:-40017131 | MS.gene25392:intron |
AAAACATTCTGATCTTGTGG+AGG | 0.627867 | 8.2:-40012437 | MS.gene25392:CDS |
GTCTTGTGTAGTAGACATCG+TGG | 0.637554 | 8.2:+40019161 | None:intergenic |
GATCAGGATGTTCGACAATG+AGG | 0.651290 | 8.2:+40017432 | None:intergenic |
TGTCGGACTGAGTACCGAGA+AGG | 0.658623 | 8.2:-40017588 | MS.gene25392:CDS |
GAGAAGGCCAACGATTTGCA+AGG | 0.661652 | 8.2:-40017572 | MS.gene25392:CDS |
ACCTTAACAAAGTCACGGAG+AGG | 0.667295 | 8.2:-40017222 | MS.gene25392:CDS |
CTTGTGTAGTAGACATCGTG+GGG | 0.677029 | 8.2:+40019163 | None:intergenic |
CAGCAAAATAATTACCCGAG+AGG | 0.690212 | 8.2:-40011406 | MS.gene25392:CDS |
GACATGACGATTGATACGAA+AGG | 0.748641 | 8.2:-40017464 | MS.gene25392:CDS |
GGAGAGGTTAGGAATACACG+AGG | 0.778238 | 8.2:-40017206 | MS.gene25392:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 40010832 | 40019238 | 40010832 | ID=MS.gene25392 |
chr8.2 | mRNA | 40010832 | 40019238 | 40010832 | ID=MS.gene25392.t1;Parent=MS.gene25392 |
chr8.2 | exon | 40019159 | 40019238 | 40019159 | ID=MS.gene25392.t1.exon1;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40019159 | 40019238 | 40019159 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40017366 | 40017619 | 40017366 | ID=MS.gene25392.t1.exon2;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40017366 | 40017619 | 40017366 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40017132 | 40017268 | 40017132 | ID=MS.gene25392.t1.exon3;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40017132 | 40017268 | 40017132 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40012401 | 40012476 | 40012401 | ID=MS.gene25392.t1.exon4;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40012401 | 40012476 | 40012401 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40012285 | 40012314 | 40012285 | ID=MS.gene25392.t1.exon5;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40012285 | 40012314 | 40012285 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40011392 | 40011537 | 40011392 | ID=MS.gene25392.t1.exon6;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40011392 | 40011537 | 40011392 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
chr8.2 | exon | 40010832 | 40010960 | 40010832 | ID=MS.gene25392.t1.exon7;Parent=MS.gene25392.t1 |
chr8.2 | CDS | 40010832 | 40010960 | 40010832 | ID=cds.MS.gene25392.t1;Parent=MS.gene25392.t1 |
Gene Sequence |
Protein sequence |