Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25752.t1 | XP_024634747.1 | 97.1 | 518 | 15 | 0 | 5 | 522 | 17 | 534 | 3.20E-272 | 947.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25752.t1 | Q9SFD5 | 47.7 | 537 | 247 | 10 | 5 | 519 | 20 | 544 | 4.7e-123 | 443.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25752.t1 | A0A072V1B9 | 93.7 | 525 | 18 | 2 | 1 | 522 | 1 | 513 | 1.0e-259 | 905.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25752.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25752.t1 | MTR_3g081360 | 94.286 | 525 | 15 | 2 | 1 | 522 | 1 | 513 | 0.0 | 1009 |
| MS.gene25752.t1 | MTR_3g082790 | 80.479 | 543 | 80 | 4 | 5 | 521 | 21 | 563 | 0.0 | 866 |
| MS.gene25752.t1 | MTR_3g082790 | 80.688 | 523 | 76 | 3 | 24 | 521 | 1 | 523 | 0.0 | 840 |
| MS.gene25752.t1 | MTR_2g026310 | 50.471 | 531 | 246 | 6 | 5 | 519 | 19 | 548 | 1.74e-174 | 503 |
| MS.gene25752.t1 | MTR_7g063290 | 46.990 | 515 | 225 | 7 | 4 | 518 | 17 | 483 | 6.19e-147 | 431 |
| MS.gene25752.t1 | MTR_2g026380 | 45.402 | 522 | 233 | 8 | 4 | 519 | 17 | 492 | 9.18e-142 | 417 |
| MS.gene25752.t1 | MTR_3g081380 | 76.471 | 170 | 38 | 1 | 3 | 170 | 14 | 183 | 1.99e-92 | 280 |
| MS.gene25752.t1 | MTR_3g081390 | 53.416 | 161 | 33 | 2 | 5 | 165 | 7 | 125 | 1.86e-41 | 145 |
| MS.gene25752.t1 | MTR_3g081420 | 38.462 | 208 | 119 | 2 | 318 | 519 | 2 | 206 | 4.59e-41 | 147 |
| MS.gene25752.t1 | MTR_7g062030 | 58.442 | 77 | 32 | 0 | 6 | 82 | 33 | 109 | 3.21e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25752.t1 | AT3G07740 | 51.397 | 537 | 227 | 10 | 5 | 519 | 20 | 544 | 6.50e-171 | 494 |
| MS.gene25752.t1 | AT4G16420 | 50.096 | 519 | 203 | 8 | 5 | 521 | 18 | 482 | 1.90e-170 | 490 |
| MS.gene25752.t1 | AT3G07740 | 51.737 | 518 | 217 | 9 | 24 | 519 | 17 | 523 | 2.16e-168 | 487 |
| MS.gene25752.t1 | AT3G07740 | 50.735 | 544 | 227 | 11 | 5 | 519 | 20 | 551 | 2.61e-168 | 488 |
| MS.gene25752.t1 | AT4G16420 | 49.713 | 523 | 203 | 9 | 5 | 521 | 18 | 486 | 3.09e-168 | 485 |
| MS.gene25752.t1 | AT4G16420 | 48.948 | 523 | 206 | 8 | 5 | 521 | 18 | 485 | 5.77e-167 | 482 |
| MS.gene25752.t1 | AT3G07740 | 51.760 | 483 | 203 | 8 | 56 | 519 | 2 | 473 | 2.92e-155 | 451 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAACTCCATCATTATTT+TGG | 0.150007 | 3.2:-71180785 | None:intergenic |
| TTTGGCAGAAATGGAATTTA+AGG | 0.163949 | 3.2:+71182180 | MS.gene25752:CDS |
| GTAGGATTTGTCTTATTCTA+TGG | 0.220086 | 3.2:+71179469 | MS.gene25752:intron |
| CAAAAGAATAAAAGACTTAA+AGG | 0.230732 | 3.2:+71182775 | MS.gene25752:CDS |
| TAGATATGCATCAGATTTCT+TGG | 0.239365 | 3.2:-71183916 | None:intergenic |
| GAAAAGAAGCCTAAATTATC+TGG | 0.247074 | 3.2:+71182067 | MS.gene25752:CDS |
| TATGATATGCTTGTGGAAAA+AGG | 0.255246 | 3.2:+71183975 | MS.gene25752:CDS |
| GCTATTGACATGCATGGATT+TGG | 0.276427 | 3.2:+71179260 | MS.gene25752:CDS |
| GTTCACATTGGAAGCCTTCT+TGG | 0.280186 | 3.2:-71180763 | None:intergenic |
| TGCATAGAGTGCTTCTTTGT+TGG | 0.282569 | 3.2:+71177176 | MS.gene25752:CDS |
| TCACATATTTGAAGCTCTTC+AGG | 0.296633 | 3.2:-71182668 | None:intergenic |
| ACATGCATGGATTTGGGAAT+TGG | 0.309773 | 3.2:+71179267 | MS.gene25752:CDS |
| CAATGATGCTGAGCAAGTTT+TGG | 0.319202 | 3.2:+71182162 | MS.gene25752:CDS |
| TTTAATACCATAACTCGATA+TGG | 0.332731 | 3.2:-71177230 | None:intergenic |
| TTATATTCCCCAGATAATTT+AGG | 0.358245 | 3.2:-71182076 | None:intergenic |
| CCAAAATAATGATGGAGTTA+AGG | 0.371137 | 3.2:+71180785 | MS.gene25752:CDS |
| CTATTGACATGCATGGATTT+GGG | 0.372854 | 3.2:+71179261 | MS.gene25752:CDS |
| TCTTCACCTGCACTCCAATC+TGG | 0.373150 | 3.2:-71179088 | None:intergenic |
| TGTCTTTGTGATAGCTTGTA+TGG | 0.382689 | 3.2:-71183574 | None:intergenic |
| AGAGTCAGCTTTGCATTTGA+AGG | 0.391333 | 3.2:-71180452 | None:intergenic |
| TTGCAGGAAGCTAGAATTGC+TGG | 0.400705 | 3.2:+71183408 | MS.gene25752:intron |
| TATGGCTGGCGGTGCATCCT+TGG | 0.406764 | 3.2:-71183556 | None:intergenic |
| GGTGAGAGAAATTTCTCAAA+AGG | 0.408187 | 3.2:-71182647 | None:intergenic |
| ATCAATTTATTGAACAAAAG+AGG | 0.414539 | 3.2:+71183454 | MS.gene25752:CDS |
| TATAAAGAAAGTGGTCAGAT+TGG | 0.427378 | 3.2:+71183501 | MS.gene25752:CDS |
| GAAGCCTTCTTGGTTATACT+TGG | 0.427656 | 3.2:-71180753 | None:intergenic |
| TAAATTCTGTCAATCTTGCT+TGG | 0.438413 | 3.2:-71183954 | None:intergenic |
| CACAAAGACACTAGAAGAAT+GGG | 0.442742 | 3.2:+71183587 | MS.gene25752:CDS |
| CCTCTCAACACTTCAATAGA+TGG | 0.448042 | 3.2:-71182100 | None:intergenic |
| TAGGATTTGTCTTATTCTAT+GGG | 0.455897 | 3.2:+71179470 | MS.gene25752:intron |
| TGAAGAGAAGTTACTTATTG+AGG | 0.462048 | 3.2:+71179105 | MS.gene25752:CDS |
| CTTTAGGCTATTGACATGCA+TGG | 0.463532 | 3.2:+71179254 | MS.gene25752:intron |
| GAACTCCTTGCCATGGCAAA+AGG | 0.466099 | 3.2:+71179506 | MS.gene25752:CDS |
| TCACAAAGACACTAGAAGAA+TGG | 0.467289 | 3.2:+71183586 | MS.gene25752:CDS |
| AGAAATTTCTCAAAAGGATC+GGG | 0.467873 | 3.2:-71182641 | None:intergenic |
| TCAGATATACAGCATTATAA+TGG | 0.471582 | 3.2:-71179340 | None:intergenic |
| TTCCGCTTACATCTCCAGAT+TGG | 0.472380 | 3.2:+71179074 | MS.gene25752:CDS |
| AATGATGGAGTTAAGGTTGA+AGG | 0.474514 | 3.2:+71180792 | MS.gene25752:CDS |
| TCTCAAGCAGGTTGGAGCAC+TGG | 0.475857 | 3.2:+71182043 | MS.gene25752:CDS |
| CCGCGTAATGTTGAGGAAGA+TGG | 0.476953 | 3.2:-71183859 | None:intergenic |
| AAAAGAAGCCTAAATTATCT+GGG | 0.481337 | 3.2:+71182068 | MS.gene25752:CDS |
| CAATCATCCATATCGAGTTA+TGG | 0.484056 | 3.2:+71177223 | MS.gene25752:CDS |
| GGCGGTGCATCCTTGGTACT+AGG | 0.496097 | 3.2:-71183549 | None:intergenic |
| TTTACTTTATTCCATCAGAA+AGG | 0.497295 | 3.2:-71180487 | None:intergenic |
| AAAGAACCTCACCTTTCTGA+TGG | 0.498619 | 3.2:+71180476 | MS.gene25752:CDS |
| GAGAAATTTCTCAAAAGGAT+CGG | 0.500929 | 3.2:-71182642 | None:intergenic |
| GATTTAGAAGCTTCATATGC+AGG | 0.502552 | 3.2:+71176964 | MS.gene25752:CDS |
| TTTGTGATAGCTTGTATGGC+TGG | 0.504362 | 3.2:-71183570 | None:intergenic |
| AATGTGAACCAAAATAATGA+TGG | 0.504833 | 3.2:+71180777 | MS.gene25752:CDS |
| CGCGTAATGTTGAGGAAGAT+GGG | 0.509064 | 3.2:-71183858 | None:intergenic |
| ACATCTCCAGATTGGAGTGC+AGG | 0.509957 | 3.2:+71179082 | MS.gene25752:CDS |
| TCAAATAGCCTTACAGGTAG+AGG | 0.513546 | 3.2:-71179377 | None:intergenic |
| TCAAATATGTGAACAGTACA+AGG | 0.524557 | 3.2:+71182679 | MS.gene25752:CDS |
| CATGCAGTTAGAAATTTCAA+AGG | 0.524634 | 3.2:+71183884 | MS.gene25752:CDS |
| CTATAGATTGTACCTGAGGT+TGG | 0.533420 | 3.2:-71180630 | None:intergenic |
| ATGCAGTTAGAAATTTCAAA+GGG | 0.542710 | 3.2:+71183885 | MS.gene25752:CDS |
| CAGCTCTGAAGAATCTAAGA+AGG | 0.544590 | 3.2:+71180578 | MS.gene25752:intron |
| CAAGGTAACTATAAAGAAAG+TGG | 0.546753 | 3.2:+71183492 | MS.gene25752:CDS |
| AAAGGACATCAACTCAAGAA+AGG | 0.549772 | 3.2:+71179524 | MS.gene25752:CDS |
| CAGAATTTATGATATGCTTG+TGG | 0.553524 | 3.2:+71183968 | MS.gene25752:CDS |
| TCTTCCAAGTATAACCAAGA+AGG | 0.569053 | 3.2:+71180749 | MS.gene25752:CDS |
| ATGGTGTTGCTGAAAACGTT+GGG | 0.572743 | 3.2:+71179291 | MS.gene25752:CDS |
| AACATGTCAAGGCCAACCTC+AGG | 0.574063 | 3.2:+71180618 | MS.gene25752:CDS |
| TTGTTAGTAGAATCTCAAGC+AGG | 0.574478 | 3.2:+71182031 | MS.gene25752:intron |
| AGTGGTCAGATTGGAACAAG+TGG | 0.587270 | 3.2:+71183510 | MS.gene25752:CDS |
| TAAATCATCAGCATTTAAAG+CGG | 0.588889 | 3.2:-71176947 | None:intergenic |
| CATCTATTGAAGTGTTGAGA+GGG | 0.593154 | 3.2:+71182101 | MS.gene25752:CDS |
| GCATGATCCGCGTAATGTTG+AGG | 0.597253 | 3.2:-71183866 | None:intergenic |
| CATGGATTTGGGAATTGGAA+TGG | 0.599035 | 3.2:+71179272 | MS.gene25752:CDS |
| TAGTAGAATCTCAAGCAGGT+TGG | 0.601506 | 3.2:+71182035 | MS.gene25752:intron |
| CCATCTATTGAAGTGTTGAG+AGG | 0.602727 | 3.2:+71182100 | MS.gene25752:CDS |
| CCACTAATCAAAACATGTCA+AGG | 0.604753 | 3.2:+71180607 | MS.gene25752:CDS |
| CTTACAGGTAGAGGAAAACA+TGG | 0.611599 | 3.2:-71179368 | None:intergenic |
| CCATCTTCCTCAACATTACG+CGG | 0.613654 | 3.2:+71183859 | MS.gene25752:CDS |
| TGAACGTGAAATGAAACTGC+AGG | 0.617265 | 3.2:+71182219 | MS.gene25752:CDS |
| CAAAGAGGAACTCCTTGCCA+TGG | 0.618565 | 3.2:+71179499 | MS.gene25752:CDS |
| AGAATCATTTCCTAGTACCA+AGG | 0.625963 | 3.2:+71183539 | MS.gene25752:CDS |
| TTTATTCCATCAGAAAGGTG+AGG | 0.628847 | 3.2:-71180482 | None:intergenic |
| AGGACAAAAGAAGCTGAACA+AGG | 0.637958 | 3.2:+71183474 | MS.gene25752:CDS |
| TCACTCAAAAGAAGAGCATG+AGG | 0.651691 | 3.2:+71182715 | MS.gene25752:CDS |
| TTCTATGGGAAAGAACAAAG+AGG | 0.651784 | 3.2:+71179484 | MS.gene25752:CDS |
| GTGATAGCTTGTATGGCTGG+CGG | 0.658411 | 3.2:-71183567 | None:intergenic |
| AATGGTGTTGCTGAAAACGT+TGG | 0.659458 | 3.2:+71179290 | MS.gene25752:CDS |
| AACAGTACAAGGTCTTCATG+CGG | 0.668099 | 3.2:+71182690 | MS.gene25752:CDS |
| CTCCAATCTGGAGATGTAAG+CGG | 0.681010 | 3.2:-71179076 | None:intergenic |
| AAAGAAGCCTAAATTATCTG+GGG | 0.686550 | 3.2:+71182069 | MS.gene25752:CDS |
| AGAGGGTACAATTCTAACAG+AGG | 0.689534 | 3.2:+71182118 | MS.gene25752:CDS |
| GTAGGCATGGGAATAACTGA+TGG | 0.696306 | 3.2:+71177062 | MS.gene25752:intron |
| ATGAAACTGCAGGTGCTCCG+TGG | 0.711759 | 3.2:+71182229 | MS.gene25752:CDS |
| GTAATGTTGAGGAAGATGGG+TGG | 0.746783 | 3.2:-71183855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71176676 | 71184013 | 71176676 | ID=MS.gene25752 |
| chr3.2 | mRNA | 71176676 | 71184013 | 71176676 | ID=MS.gene25752.t1;Parent=MS.gene25752 |
| chr3.2 | exon | 71176676 | 71176686 | 71176676 | ID=MS.gene25752.t1.exon1;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71176676 | 71176686 | 71176676 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71176930 | 71176985 | 71176930 | ID=MS.gene25752.t1.exon2;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71176930 | 71176985 | 71176930 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71177066 | 71177244 | 71177066 | ID=MS.gene25752.t1.exon3;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71177066 | 71177244 | 71177066 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71179061 | 71179126 | 71179061 | ID=MS.gene25752.t1.exon4;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71179061 | 71179126 | 71179061 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71179260 | 71179385 | 71179260 | ID=MS.gene25752.t1.exon5;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71179260 | 71179385 | 71179260 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71179473 | 71179545 | 71179473 | ID=MS.gene25752.t1.exon6;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71179473 | 71179545 | 71179473 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71180447 | 71180504 | 71180447 | ID=MS.gene25752.t1.exon7;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71180447 | 71180504 | 71180447 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71180581 | 71180639 | 71180581 | ID=MS.gene25752.t1.exon8;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71180581 | 71180639 | 71180581 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71180736 | 71180813 | 71180736 | ID=MS.gene25752.t1.exon9;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71180736 | 71180813 | 71180736 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71182041 | 71182263 | 71182041 | ID=MS.gene25752.t1.exon10;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71182041 | 71182263 | 71182041 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71182586 | 71182796 | 71182586 | ID=MS.gene25752.t1.exon11;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71182586 | 71182796 | 71182586 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71183414 | 71183650 | 71183414 | ID=MS.gene25752.t1.exon12;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71183414 | 71183650 | 71183414 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| chr3.2 | exon | 71183822 | 71184013 | 71183822 | ID=MS.gene25752.t1.exon13;Parent=MS.gene25752.t1 |
| chr3.2 | CDS | 71183822 | 71184013 | 71183822 | ID=cds.MS.gene25752.t1;Parent=MS.gene25752.t1 |
| Gene Sequence |
| Protein sequence |