AlfalfaGEDB | MS.gene25758

M. sativa cultivar XinJiangDaYe / MS.gene25758

KEGG: -
GO: -
PFAM: PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25758.t1	KEH35169.1	90.2	122	11	1	1	121	52	173	3.80E-51	210.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25758.t1	A0A072UZD5	90.2	122	11	1	1	121	52	173	2.7e-51	210.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25758.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25758.t1	MTR_3g081210	90.164	122	11	1	1	121	52	173	2.86e-75	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 20 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCTGTGGTGTCCATTGCG+AGG	0.627615	3.2:+71117444	None:intergenic
ACACCACAGATTTGACGAAA+AGG	0.545745	3.2:-71117433	MS.gene25758:CDS
ATGCACTAGGTTGCATTGAA+AGG	0.491779	3.2:+71116993	None:intergenic
ATGGTTGGCAAGTCAAGAAA+TGG	0.426643	3.2:-71117059	MS.gene25758:CDS
ATTTGACGAAAAGGAGCTTC+AGG	0.413840	3.2:-71117424	MS.gene25758:intron
CAAGAAATGGATGGAAAGAA+TGG	0.480394	3.2:-71117046	MS.gene25758:CDS
CATGAGTTACAATAGAGAGG+TGG	0.687315	3.2:+71116885	None:intergenic
CTTGATGGAAAAGCCATGTG+AGG	0.674355	3.2:+71116958	None:intergenic
CTTGTTGCAAATCCTCGCAA+TGG	0.611244	3.2:-71117456	MS.gene25758:CDS
GATGAAACGAAATTGTTGTT+TGG	0.350812	3.2:-71117623	MS.gene25758:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACATTGATCATTACAGTG+TGG	+	chr3.2:71117261-71117280	None:intergenic	30.0%
ATTATCGCATGCAAAAAGTT+AGG	+	chr3.2:71117167-71117186	None:intergenic	30.0%
GATAGAATTTGAGTCGTTTA+TGG	-	chr3.2:71116938-71116957	MS.gene25758:CDS	30.0%
TATCATGAGTTACAATAGAG+AGG	+	chr3.2:71117599-71117618	None:intergenic	30.0%
TTGTTCTGTGGAAGAAAATT+TGG	-	chr3.2:71117123-71117142	MS.gene25758:intron	30.0%
ATTTCTTCATCCTTGTTCTG+TGG	-	chr3.2:71117111-71117130	MS.gene25758:intron	35.0%
CAAGAAATGGATGGAAAGAA+TGG	-	chr3.2:71117432-71117451	MS.gene25758:CDS	35.0%
CGTGTATGGCAAAAAAAACA+TGG	-	chr3.2:71117189-71117208	MS.gene25758:intron	35.0%
TCCTATTCTTTCTCTTCTCA+AGG	+	chr3.2:71117563-71117582	None:intergenic	35.0%
TCCTTGAGAAGAGAAAGAAT+AGG	-	chr3.2:71117559-71117578	MS.gene25758:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	71116856	71117644	71116856	ID=MS.gene25758
chr3.2	mRNA	71116856	71117644	71116856	ID=MS.gene25758.t1;Parent=MS.gene25758
chr3.2	exon	71117601	71117644	71117601	ID=MS.gene25758.t1.exon1;Parent=MS.gene25758.t1
chr3.2	CDS	71117601	71117644	71117601	ID=cds.MS.gene25758.t1;Parent=MS.gene25758.t1
chr3.2	exon	71117425	71117506	71117425	ID=MS.gene25758.t1.exon2;Parent=MS.gene25758.t1
chr3.2	CDS	71117425	71117506	71117425	ID=cds.MS.gene25758.t1;Parent=MS.gene25758.t1
chr3.2	exon	71116856	71117095	71116856	ID=MS.gene25758.t1.exon3;Parent=MS.gene25758.t1
chr3.2	CDS	71116856	71117095	71116856	ID=cds.MS.gene25758.t1;Parent=MS.gene25758.t1

Gene Sequence

>MS.gene25758

ATGAAACGAAATTGTTGTTTGGATTCATCGTCTCGTAAATCAATGTAAGTGATTTCAAAGTTTTTTTCATCTTCATCATCTTGATAGAATTTGAGTCGTTTATGGTTTTTGTTAAACTCTTGGAATTTTTTTTTGTAGGAATGAGAAGTTGAACGTAAACAAGAAACTTGTTGCAAATCCTCGCAATGGACACCACAGATTTGACGAAAAGGAGCTTCAGGTAAATATGCGTATCTAAAAACATCATTTTTGACGATTTCTTCATCCTTGTTCTGTGGAAGAAAATTTGGCAATTTAATAATTATTTTCCTAACTTTTTGCATGCGATAATTACGTGTATGGCAAAAAAAACATGGACAAATATTTTTTGACAATAAAACATGCACAAATAAACTCCCTTGACCACACTGTAATGATCAATGTATAACTTATTTTTGTCACAAAAAAACATTATTACTATGATAATTTTCTCCAGTGAATATACCTATCTTTTTCATAATGTAAATCTTAATATATCTATTTTTATCATTGGTTAAATTTTGGTTGCAGGCTAGAGCTATAATATGGTTGGCAAGTCAAGAAATGGATGGAAAGAATGGTAGCAACAAAGAATCAACTCCAACTCTATCCCTTTCAATGCAACCTAGTGCATTACAAATGCATGCCTCACATGGCTTTTCCATCAAGCGATCACTTCAAAATTTCCTTGAGAAGAGAAAGAATAGGATTCAAAGTTACCACCTCTCTATTGTAACTCATGATAATGATAATAATAGTAGTACAAATTAG

Protein sequence

>MS.gene25758.t1

MKRNCCLDSSSRKSMNEKLNVNKKLVANPRNGHHRFDEKELQARAIIWLASQEMDGKNGSNKESTPTLSLSMQPSALQMHASHGFSIKRSLQNFLEKRKNRIQSYHLSIVTHDNDNNSSTN