AlfalfaGEDB | MS.gene25775

M. sativa cultivar XinJiangDaYe / MS.gene25775

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25775.t1	XP_003601459.1	99	207	2	0	1	207	1	207	9.90E-108	399.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25775.t1	Q4PSU4	57.6	165	65	2	1	162	55	217	2.3e-44	180.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25775.t1	G7J813	99.0	207	2	0	1	207	1	207	7.1e-108	399.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25775.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25775.t1	MTR_3g080940	99.034	207	2	0	1	207	1	207	9.53e-152	419
MS.gene25775.t1	MTR_8g043650	49.746	197	95	1	1	197	1	193	2.87e-66	204
MS.gene25775.t1	MTR_1g105920	58.788	165	61	2	1	165	1	158	8.25e-66	202
MS.gene25775.t1	MTR_1g106070	54.023	174	80	0	1	174	1	174	2.92e-65	199
MS.gene25775.t1	MTR_3g052920	58.125	160	67	0	1	160	1	160	6.49e-65	200
MS.gene25775.t1	MTR_1g105910	51.309	191	83	1	1	181	1	191	8.48e-65	200
MS.gene25775.t1	MTR_1g108510	53.552	183	83	1	1	181	1	183	4.13e-64	198
MS.gene25775.t1	MTR_2g093190	54.098	183	82	1	1	181	1	183	2.14e-63	196
MS.gene25775.t1	MTR_2g030740	56.875	160	69	0	1	160	1	160	9.36e-63	195
MS.gene25775.t1	MTR_3g030770	53.005	183	84	1	1	181	1	183	9.83e-63	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25775.t1	AT5G60440	53.297	182	80	3	5	183	3	182	5.60e-58	185
MS.gene25775.t1	AT2G24840	56.604	159	64	2	7	162	61	217	4.18e-56	179
MS.gene25775.t1	AT4G36590	42.632	190	92	4	5	186	3	183	1.09e-40	139
MS.gene25775.t1	AT1G01530	37.306	193	109	4	5	196	3	184	1.40e-36	128
MS.gene25775.t1	AT1G65360	37.306	193	110	4	5	196	3	185	1.39e-32	117
MS.gene25775.t1	AT2G34440	36.095	169	101	4	8	171	1	167	1.10e-26	100
MS.gene25775.t1	AT3G04100	32.121	165	108	3	2	162	7	171	1.96e-24	95.9
MS.gene25775.t1	AT3G66656	41.803	122	63	2	8	123	1	120	1.49e-23	92.8
MS.gene25775.t1	AT1G72350	36.364	154	65	4	9	162	43	163	3.06e-21	87.8
MS.gene25775.t1	AT1G28460	34.722	144	90	2	1	141	1	143	3.16e-21	87.0

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Find 38 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGATAATAGCTATT+AGG	0.328747	3.2:+70862155	None:intergenic
AAGCTAGGCAAATGCAATTT+TGG	0.234014	3.2:-70862364	MS.gene25775:CDS
AATATTTGAAGAAGAAACAT+TGG	0.484454	3.2:+70862226	None:intergenic
AATGAAAAGGCCTTATTGGC+CGG	0.531850	3.2:+70862578	None:intergenic
AATGTTTCTTCTTCAAATAT+TGG	0.290840	3.2:-70862224	MS.gene25775:CDS
AATTGCTAGCAAATGCATGA+TGG	0.549591	3.2:-70862255	MS.gene25775:CDS
AGATAATAGCTATTAGGAAG+TGG	0.515794	3.2:+70862161	None:intergenic
AGCGAGCTTTGTACTCTTTG+TGG	0.399076	3.2:-70862629	MS.gene25775:CDS
AGGTTTCTATTGAGGACCTC+AGG	0.504170	3.2:-70862292	MS.gene25775:CDS
ATAATAGCTATTAGGAAGTG+GGG	0.630969	3.2:+70862163	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATAATAGCTATTAGGAAG+TGG	+	chr3.2:70862733-70862752	None:intergenic	30.0%
ATAATAGCTATTAGGAAGTG+GGG	+	chr3.2:70862731-70862750	None:intergenic	30.0%
CCAATTAAAGGTTTCTATTG+AGG	-	chr3.2:70862591-70862610	MS.gene25775:CDS	30.0%
CCTCAATAGAAACCTTTAAT+TGG	+	chr3.2:70862594-70862613	None:intergenic	30.0%
CTTCCTAATAGCTATTATCT+TGG	-	chr3.2:70862733-70862752	MS.gene25775:CDS	30.0%
GAATGAATTGCTCCAATTAA+AGG	-	chr3.2:70862579-70862598	MS.gene25775:CDS	30.0%
GATAATAGCTATTAGGAAGT+GGG	+	chr3.2:70862732-70862751	None:intergenic	30.0%
TCTTCAAATATTGGAGCTAA+TGG	-	chr3.2:70862676-70862695	MS.gene25775:CDS	30.0%
AATTGCTAGCAAATGCATGA+TGG	-	chr3.2:70862636-70862655	MS.gene25775:CDS	35.0%
TAGATCATGTGAGAAAAGCT+AGG	-	chr3.2:70862512-70862531	MS.gene25775:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	70862145	70862768	70862145	ID=MS.gene25775
chr3.2	mRNA	70862145	70862768	70862145	ID=MS.gene25775.t1;Parent=MS.gene25775
chr3.2	exon	70862145	70862768	70862145	ID=MS.gene25775.t1.exon1;Parent=MS.gene25775.t1
chr3.2	CDS	70862145	70862768	70862145	ID=cds.MS.gene25775.t1;Parent=MS.gene25775.t1

Gene Sequence

>MS.gene25775

ATGTCAAAGAAAAAGACTAGTTTAGGTCGTCAAAAAATCCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGTCGTTCCGGACTTTTCAAAAAGGCTAGCGAGCTTTGTACTCTTTGTGGGGTGGAAATTGCAATTGTTGTTTTCTCTCCGGCCAATAAGGCCTTTTCATTTGGCCATCCAGAAGTTGAGTCTATCATTGATCGTTATCTTAGTCGAAATCCTCCACAAGAGTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCCAATGTCCGTGATCTCAATGTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGGGAAGAGATAGATCATGTGAGAAAAGCTAGGCAAATGCAATTTTGGTGGGAAAGCCCTGTTGATGAACTTGGCTTGAATGAATTGCTCCAATTAAAGGTTTCTATTGAGGACCTCAGGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATGTTTCTTCTTCAAATATTGGAGCTAATGGATTTTTAGGTGTAGGGATTAATATTGCTTCCCCACTTCCTAATAGCTATTATCTTGGTTTTCGAATTTGA

Protein sequence

>MS.gene25775.t1

MSKKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQMQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGINIASPLPNSYYLGFRI