AlfalfaGEDB | MS.gene25935

M. sativa cultivar XinJiangDaYe / MS.gene25935

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25935.t1	XP_013461023.1	95.9	607	25	0	1	607	37	643	6.10E-283	983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25935.t1	O48788	38.7	302	169	7	300	588	314	612	3.7e-50	201.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25935.t1	A0A072UZR6	95.9	607	25	0	1	607	37	643	4.4e-283	983.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25935.t1	MTR_3g078250	96.211	607	23	0	1	607	37	643	0.0	1208
MS.gene25935.t1	MTR_2g023150	57.463	268	106	2	339	606	1	260	8.83e-103	312
MS.gene25935.t1	MTR_1g110280	32.913	635	337	17	10	596	45	638	2.29e-93	301
MS.gene25935.t1	MTR_3g093710	33.826	609	342	17	15	601	51	620	3.07e-89	289
MS.gene25935.t1	MTR_1g061590	32.480	625	351	17	20	598	50	649	2.01e-87	286
MS.gene25935.t1	MTR_6g470960	32.325	628	379	16	15	607	44	660	9.12e-86	281
MS.gene25935.t1	MTR_5g075630	33.719	605	340	17	15	599	68	631	9.56e-85	278
MS.gene25935.t1	MTR_8g099195	31.323	597	359	11	15	599	42	599	2.04e-83	274
MS.gene25935.t1	MTR_7g103440	33.068	629	350	22	20	598	55	662	8.49e-82	271
MS.gene25935.t1	MTR_5g078080	33.443	607	353	19	15	601	46	621	1.68e-81	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25935.t1	AT2G26730	35.354	594	351	14	7	588	40	612	3.67e-96	308
MS.gene25935.t1	AT1G68400	33.648	636	343	19	3	596	39	637	2.59e-91	296
MS.gene25935.t1	AT2G36570	34.554	628	336	20	19	598	48	648	2.71e-91	296
MS.gene25935.t1	AT1G48480	33.333	603	352	20	15	588	54	635	3.02e-85	280
MS.gene25935.t1	AT1G64210	31.974	613	323	17	15	601	43	587	8.74e-84	274
MS.gene25935.t1	AT5G24100	32.318	591	349	17	14	589	51	605	2.49e-83	273
MS.gene25935.t1	AT3G08680	31.901	605	337	20	15	588	47	607	2.83e-81	268
MS.gene25935.t1	AT3G08680	31.901	605	337	20	15	588	47	607	2.83e-81	268
MS.gene25935.t1	AT5G58300	30.870	609	363	17	15	603	67	637	8.72e-81	268
MS.gene25935.t1	AT5G58300	30.870	609	363	17	15	603	67	637	8.72e-81	268

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Find 113 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGTCCGAAACATGA+AGG	0.599826	3.2:+69143314	None:intergenic
AAAGCATGGAAGCCTATACA+AGG	0.620276	3.2:-69142624	MS.gene25935:CDS
AAAGTGGACACTCTCTTGAT+TGG	0.455074	3.2:-69142038	MS.gene25935:CDS
AAATCTCGATCATCTGTCAA+AGG	0.570198	3.2:+69141492	None:intergenic
AACATGAAGAGGCTACCATT+TGG	0.521071	3.2:+69142425	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3.2:-69141889	MS.gene25935:CDS
AAGAACTGGTTTAATGGCCT+TGG	0.374584	3.2:-69142785	MS.gene25935:CDS
AAGAATGGTGAACTTGTTGC+AGG	0.483012	3.2:-69141617	MS.gene25935:CDS
AAGTTGGAGAAATCAAAATC+AGG	0.498633	3.2:+69143208	None:intergenic
AATAAGCGAATATGGTCTAA+TGG	0.417814	3.2:-69141881	MS.gene25935:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGGAGAAATCAAAATC+AGG	+	chr3.2:69141948-69141967	None:intergenic	30.0%
AATAAGCGAATATGGTCTAA+TGG	-	chr3.2:69143272-69143291	MS.gene25935:CDS	30.0%
ACTATGTAGCCTGAATAAAT+TGG	+	chr3.2:69142170-69142189	None:intergenic	30.0%
ATTCAAATGGATCAAAGAAC+TGG	-	chr3.2:69142354-69142373	MS.gene25935:intron	30.0%
ATTGGCAAATCATCAAGAAA+TGG	+	chr3.2:69142152-69142171	None:intergenic	30.0%
CAAAGCATGAATTTGAAAGA+AGG	-	chr3.2:69142609-69142628	MS.gene25935:CDS	30.0%
CTAACTTCTTTGCATTTCAA+TGG	+	chr3.2:69142808-69142827	None:intergenic	30.0%
CTCAACAACAATTACTTACA+CGG	-	chr3.2:69141702-69141721	MS.gene25935:CDS	30.0%
CTCATACTTAGCTTATCATT+TGG	+	chr3.2:69143588-69143607	None:intergenic	30.0%
CTGAGTCTAAATTTCAATTC+AGG	+	chr3.2:69143045-69143064	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	69141501	69143674	69141501	ID=MS.gene25935
chr3.2	mRNA	69141501	69143674	69141501	ID=MS.gene25935.t1;Parent=MS.gene25935
chr3.2	exon	69142417	69143674	69142417	ID=MS.gene25935.t1.exon1;Parent=MS.gene25935.t1
chr3.2	CDS	69142417	69143674	69142417	ID=cds.MS.gene25935.t1;Parent=MS.gene25935.t1
chr3.2	exon	69141501	69142066	69141501	ID=MS.gene25935.t1.exon2;Parent=MS.gene25935.t1
chr3.2	CDS	69141501	69142066	69141501	ID=cds.MS.gene25935.t1;Parent=MS.gene25935.t1

Gene Sequence

>MS.gene25935

ATGCATCAACTTGAACCACCAGATCAGAATTCGATGCGGGGTTGGAACCTCACATCAGATCCTTGCACTCATAACTGGCACGGTGTAACTTGTTACGCAAACAACCAATACATTAAGAGTATAGATCTTGAAAAACTTAATTTCACCGGCGTTCTAGACACAACTTCTCTTTGCATTGCTAACACTCTTCAATACCTCAGCCTCAACAACAATTACTTACACGGTTTTATATCGGAGGATATAGAAAACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACGTAACATGAAGCGCCTTCATGTTTCGGACAATCTTTTCACAGGAAACCTTCCAAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAATGTCTCTAACAACAATTTACGCGGTCCTATTCCTGATGTTGGAGGTAGATTTAGTGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCGGTTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCGTTATAAAAGGCAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCATGCTGTTAAAAAAATGCATGACCAAAAATAAAGAAACAGGCTTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGTGGTGGTGGTGTTGTTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAACTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAAGATTTGTTAAGTGCTCCTGCTGAATTGATTCGGAGAGGAAAGCATGGAAGCCTATACAAGGTTATGTTAGATAATGGTGTGCTTTTGGCTGTTAAGAGGATCAAAGATTGGGGAATTTCAAAGCATGAATTTGAAAGAAGGATGAATTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGTATGTTGCTAATTAATTATTAAGTTGTGTTACTGTGTTATTACATCCATTGAAATGCAAAGAAGTTAGTGTGTGAAGTTTTATGCACTTATCTGTAAGATATTTATATAGTCTAAGAGACAAAATAGTCAAACTATTTTTATATAAGCTATAAGTTGTTTTTATAAGTTATGGACATGTAATAAGTTGTTTGCATAAGCTCTGCCAAACACTTTATCAAGTGCTCATGTCAATAAATAAGTTTATACAGTAAGAAAATAATTTGTTAGCCTACAAGCACATGCCTGAATTGAAATTTAGACTCAGAATAAACGTAGCCAAATATTTGTACTCACCTTTAATTTCTTCAGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTTGATGTTGCTGCTAAGATCGCTGAAGCTTTGGCCTATATGCATGAAGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCGAGTAACATTCTGTTTGACAAAAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGCGGAAAATCAAGGCGTCATCTCTCTTATCAGAAGCCGCAGAAACAAAAATATGTCTGCATCAGCCACCTTCAGAGCTGATATATATGCCTTCGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAAAGAATGGTGAACTTGTTGCAGGTGGCACTAAAATGCATCAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCGCTCATCACAAATGCGTTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA

Protein sequence

>MS.gene25935.t1

MHQLEPPDQNSMRGWNLTSDPCTHNWHGVTCYANNQYIKSIDLEKLNFTGVLDTTSLCIANTLQYLSLNNNYLHGFISEDIENCKFLTHLLLSGNKFSGNLPASIPQLRNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGRFSADSFYGNPNLCGKPVSNSSCPPPPPPPPPIVIKGKKKNPFLDDLPIYSGYIVIGLIFIIFLIFMLLKKCMTKNKETGLDHVEKKDMSQDTSGGGVVVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVAENQGVISLIRSRRNKNMSASATFRADIYAFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR