Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26012.t1 | XP_003622663.1 | 82.4 | 289 | 49 | 2 | 1 | 288 | 28 | 315 | 2.90E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26012.t1 | Q8L3W1 | 27.5 | 324 | 164 | 7 | 2 | 263 | 22 | 336 | 1.2e-24 | 115.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26012.t1 | G7KVV4 | 82.4 | 289 | 49 | 2 | 1 | 288 | 28 | 315 | 2.1e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26012.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26012.t1 | MTR_7g050560 | 82.353 | 289 | 49 | 2 | 1 | 288 | 28 | 315 | 4.88e-179 | 496 |
| MS.gene26012.t1 | MTR_7g050590 | 72.449 | 294 | 62 | 3 | 1 | 276 | 1 | 293 | 2.34e-154 | 433 |
| MS.gene26012.t1 | MTR_7g050580 | 66.667 | 303 | 71 | 4 | 1 | 288 | 28 | 315 | 5.31e-139 | 394 |
| MS.gene26012.t1 | MTR_3g098790 | 65.753 | 292 | 77 | 4 | 1 | 276 | 28 | 312 | 1.25e-133 | 381 |
| MS.gene26012.t1 | MTR_7g050710 | 65.870 | 293 | 81 | 4 | 2 | 276 | 29 | 320 | 1.92e-132 | 378 |
| MS.gene26012.t1 | MTR_7g050720 | 60.068 | 293 | 89 | 6 | 1 | 265 | 25 | 317 | 1.37e-115 | 335 |
| MS.gene26012.t1 | MTR_1g035460 | 37.124 | 299 | 140 | 8 | 1 | 263 | 1 | 287 | 1.11e-52 | 177 |
| MS.gene26012.t1 | MTR_1g108780 | 35.616 | 292 | 144 | 10 | 2 | 263 | 13 | 290 | 1.08e-49 | 171 |
| MS.gene26012.t1 | MTR_8g103940 | 37.370 | 289 | 142 | 9 | 2 | 263 | 55 | 331 | 2.03e-46 | 162 |
| MS.gene26012.t1 | MTR_3g061320 | 35.971 | 278 | 137 | 9 | 2 | 262 | 26 | 279 | 5.88e-41 | 143 |
| MS.gene26012.t1 | MTR_5g044670 | 30.241 | 291 | 173 | 8 | 1 | 271 | 31 | 311 | 2.47e-36 | 132 |
| MS.gene26012.t1 | MTR_7g050640 | 67.442 | 86 | 28 | 0 | 1 | 86 | 28 | 113 | 7.08e-36 | 125 |
| MS.gene26012.t1 | MTR_3g061350 | 32.234 | 273 | 159 | 9 | 2 | 262 | 26 | 284 | 1.10e-34 | 127 |
| MS.gene26012.t1 | MTR_3g061370 | 32.624 | 282 | 146 | 9 | 2 | 262 | 23 | 281 | 1.59e-34 | 126 |
| MS.gene26012.t1 | MTR_3g061340 | 32.593 | 270 | 152 | 8 | 2 | 262 | 26 | 274 | 1.14e-33 | 124 |
| MS.gene26012.t1 | MTR_3g061310 | 31.273 | 275 | 160 | 9 | 2 | 262 | 26 | 285 | 3.27e-31 | 118 |
| MS.gene26012.t1 | MTR_1g035570 | 31.636 | 275 | 167 | 7 | 2 | 263 | 21 | 287 | 3.34e-29 | 115 |
| MS.gene26012.t1 | MTR_1g035640 | 30.986 | 284 | 166 | 10 | 2 | 271 | 21 | 288 | 7.78e-27 | 109 |
| MS.gene26012.t1 | MTR_1g035620 | 27.692 | 260 | 181 | 5 | 2 | 261 | 25 | 277 | 2.49e-25 | 104 |
| MS.gene26012.t1 | MTR_3g005490 | 26.642 | 274 | 144 | 7 | 2 | 266 | 37 | 262 | 6.81e-25 | 100 |
| MS.gene26012.t1 | MTR_3g061330 | 53.012 | 83 | 39 | 0 | 2 | 84 | 26 | 108 | 1.27e-24 | 99.8 |
| MS.gene26012.t1 | MTR_1g021360 | 27.757 | 263 | 173 | 5 | 2 | 250 | 198 | 457 | 1.73e-24 | 102 |
| MS.gene26012.t1 | MTR_3g005480 | 27.612 | 268 | 150 | 8 | 2 | 266 | 37 | 263 | 2.71e-24 | 99.4 |
| MS.gene26012.t1 | MTR_4g119990 | 28.309 | 272 | 166 | 7 | 2 | 249 | 31 | 297 | 8.51e-24 | 99.8 |
| MS.gene26012.t1 | MTR_6g043890 | 28.309 | 272 | 160 | 9 | 2 | 249 | 31 | 291 | 1.21e-23 | 99.0 |
| MS.gene26012.t1 | MTR_3g061290 | 53.012 | 83 | 39 | 0 | 2 | 84 | 26 | 108 | 1.46e-23 | 95.5 |
| MS.gene26012.t1 | MTR_1g050845 | 26.966 | 267 | 162 | 4 | 2 | 261 | 25 | 265 | 5.23e-23 | 99.4 |
| MS.gene26012.t1 | MTR_5g070440 | 26.316 | 266 | 164 | 6 | 2 | 266 | 37 | 271 | 6.33e-23 | 95.5 |
| MS.gene26012.t1 | MTR_3g005420 | 27.444 | 266 | 161 | 7 | 2 | 266 | 305 | 539 | 7.97e-22 | 95.5 |
| MS.gene26012.t1 | MTR_3g005420 | 23.938 | 259 | 126 | 8 | 2 | 250 | 56 | 253 | 4.02e-12 | 66.6 |
| MS.gene26012.t1 | MTR_1g021410 | 25.161 | 310 | 178 | 7 | 2 | 262 | 38 | 342 | 1.28e-21 | 93.6 |
| MS.gene26012.t1 | MTR_6g061070 | 26.667 | 300 | 171 | 12 | 1 | 262 | 33 | 321 | 3.07e-20 | 90.5 |
| MS.gene26012.t1 | MTR_1g021400 | 25.472 | 318 | 184 | 9 | 2 | 269 | 46 | 360 | 2.12e-19 | 87.4 |
| MS.gene26012.t1 | MTR_3g005460 | 25.547 | 274 | 164 | 9 | 2 | 266 | 278 | 520 | 3.32e-19 | 87.8 |
| MS.gene26012.t1 | MTR_3g005460 | 23.346 | 257 | 144 | 5 | 2 | 258 | 41 | 244 | 1.79e-16 | 79.7 |
| MS.gene26012.t1 | MTR_1g021435 | 25.392 | 319 | 175 | 7 | 2 | 261 | 38 | 352 | 6.17e-19 | 86.3 |
| MS.gene26012.t1 | MTR_3g005495 | 30.120 | 249 | 128 | 7 | 2 | 250 | 259 | 461 | 2.06e-18 | 85.1 |
| MS.gene26012.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 2 | 87 | 29 | 114 | 5.04e-17 | 81.3 |
| MS.gene26012.t1 | MTR_3g061220 | 44.578 | 83 | 33 | 1 | 2 | 84 | 26 | 95 | 1.36e-17 | 77.4 |
| MS.gene26012.t1 | MTR_4g068320 | 32.867 | 143 | 92 | 2 | 2 | 140 | 22 | 164 | 6.27e-17 | 80.9 |
| MS.gene26012.t1 | MTR_4g068320 | 30.303 | 132 | 86 | 2 | 137 | 268 | 268 | 393 | 6.87e-14 | 71.6 |
| MS.gene26012.t1 | MTR_1g034240 | 42.169 | 83 | 48 | 0 | 2 | 84 | 23 | 105 | 1.20e-16 | 79.7 |
| MS.gene26012.t1 | MTR_1g034240 | 28.667 | 150 | 97 | 3 | 137 | 282 | 272 | 415 | 4.02e-13 | 69.3 |
| MS.gene26012.t1 | MTR_3g005440 | 37.209 | 86 | 54 | 0 | 2 | 87 | 36 | 121 | 2.62e-15 | 75.9 |
| MS.gene26012.t1 | MTR_3g005440 | 34.884 | 86 | 56 | 0 | 2 | 87 | 258 | 343 | 6.98e-11 | 62.8 |
| MS.gene26012.t1 | MTR_1g035480 | 37.190 | 121 | 65 | 3 | 1 | 121 | 32 | 141 | 2.64e-15 | 72.8 |
| MS.gene26012.t1 | MTR_1g035650 | 28.713 | 202 | 96 | 5 | 2 | 178 | 25 | 203 | 2.71e-14 | 70.5 |
| MS.gene26012.t1 | MTR_1g035500 | 34.307 | 137 | 77 | 4 | 1 | 137 | 40 | 163 | 4.56e-14 | 69.7 |
| MS.gene26012.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 1 | 129 | 1 | 114 | 6.97e-14 | 69.7 |
| MS.gene26012.t1 | MTR_1g033740 | 35.537 | 121 | 66 | 3 | 1 | 121 | 37 | 145 | 1.35e-13 | 68.6 |
| MS.gene26012.t1 | MTR_1g035520 | 26.190 | 294 | 164 | 11 | 1 | 250 | 87 | 371 | 1.58e-13 | 70.5 |
| MS.gene26012.t1 | MTR_1g034210 | 39.759 | 83 | 48 | 1 | 2 | 84 | 23 | 103 | 1.47e-12 | 67.4 |
| MS.gene26012.t1 | MTR_1g035470 | 35.659 | 129 | 69 | 5 | 1 | 129 | 1 | 115 | 1.66e-12 | 63.9 |
| MS.gene26012.t1 | MTR_1g034210 | 39.759 | 83 | 48 | 1 | 2 | 84 | 23 | 103 | 1.76e-12 | 67.4 |
| MS.gene26012.t1 | MTR_3g005420 | 23.938 | 259 | 126 | 8 | 2 | 250 | 37 | 234 | 4.27e-12 | 66.6 |
| MS.gene26012.t1 | MTR_1g035490 | 34.711 | 121 | 72 | 4 | 145 | 263 | 81 | 196 | 1.41e-11 | 64.3 |
| MS.gene26012.t1 | MTR_1g021440 | 37.333 | 75 | 47 | 0 | 2 | 76 | 38 | 112 | 3.24e-11 | 63.2 |
| MS.gene26012.t1 | MTR_1g021440 | 37.333 | 75 | 47 | 0 | 2 | 76 | 38 | 112 | 3.88e-11 | 62.8 |
| MS.gene26012.t1 | MTR_1g021440 | 37.333 | 75 | 47 | 0 | 2 | 76 | 38 | 112 | 5.15e-11 | 63.2 |
| MS.gene26012.t1 | MTR_1g021440 | 37.333 | 75 | 47 | 0 | 2 | 76 | 38 | 112 | 5.50e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26012.t1 | AT4G01580 | 47.727 | 88 | 46 | 0 | 2 | 89 | 46 | 133 | 2.06e-19 | 84.3 |
| MS.gene26012.t1 | AT1G49475 | 40.187 | 107 | 61 | 2 | 2 | 106 | 50 | 155 | 2.48e-19 | 84.0 |
| MS.gene26012.t1 | AT3G18990 | 46.988 | 83 | 44 | 0 | 2 | 84 | 22 | 104 | 2.53e-19 | 87.0 |
| MS.gene26012.t1 | AT3G18990 | 46.988 | 83 | 44 | 0 | 2 | 84 | 22 | 104 | 3.50e-19 | 86.7 |
| MS.gene26012.t1 | AT3G18990 | 28.481 | 158 | 104 | 4 | 109 | 266 | 191 | 339 | 2.51e-11 | 63.9 |
| MS.gene26012.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 4.70e-18 | 80.9 |
| MS.gene26012.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 6.61e-18 | 80.5 |
| MS.gene26012.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 2 | 89 | 9 | 96 | 8.30e-18 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAGCTAATAATTTAT+AGG | + | 51855:14206-14225 | MS.gene26012:intergenic | 15.0% |
| !! | GATATATTATAATAACAAAG+TGG | - | 51855:14810-14829 | MS.gene26012:intron | 15.0% |
| !! | TAAAATAAAAAAATAACACG+TGG | - | 51855:14017-14036 | MS.gene26012:intron | 15.0% |
| !! | TTCACAAGTTAATATAAATT+AGG | - | 51855:13869-13888 | MS.gene26012:intron | 15.0% |
| !! | TTTGATTAGATAACTATATA+AGG | - | 51855:14841-14860 | MS.gene26012:intron | 15.0% |
| !!! | TATTTTATTTTTTTTGCCTT+GGG | + | 51855:14004-14023 | MS.gene26012:intergenic | 15.0% |
| !!! | TTATTTTATTTTTTTTGCCT+TGG | + | 51855:14005-14024 | MS.gene26012:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | 51855:14130-14149 | MS.gene26012:intron | 15.0% |
| !! | AAAAGGATAATTTATCTCTA+AGG | + | 51855:13656-13675 | MS.gene26012:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 51855:13492-13511 | MS.gene26012:intron | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 51855:13505-13524 | MS.gene26012:intron | 20.0% |
| !!! | ATTTTATTTTTTTTGCCTTG+GGG | + | 51855:14003-14022 | MS.gene26012:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | - | 51855:14129-14148 | MS.gene26012:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | 51855:14131-14150 | MS.gene26012:intron | 20.0% |
| !!! | TTTTGTAGTTTTTTTTTAGG+AGG | + | 51855:13943-13962 | MS.gene26012:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 51855:13427-13446 | MS.gene26012:CDS | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 51855:13469-13488 | MS.gene26012:intron | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 51855:13515-13534 | MS.gene26012:intron | 25.0% |
| ! | TCTATGTGATGATATCTTAA+TGG | + | 51855:14770-14789 | MS.gene26012:intergenic | 25.0% |
| ! | TCTCTAGTATTACTAGATTA+AGG | - | 51855:14501-14520 | MS.gene26012:intron | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 51855:14290-14309 | MS.gene26012:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | 51855:14222-14241 | MS.gene26012:intron | 25.0% |
| ! | TGTTAGAAGTTAATTAGTAG+AGG | - | 51855:14608-14627 | MS.gene26012:intron | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 51855:13609-13628 | MS.gene26012:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 51855:14289-14308 | MS.gene26012:intron | 25.0% |
| !!! | CGGTTTTGTAGTTTTTTTTT+AGG | + | 51855:13946-13965 | MS.gene26012:intergenic | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 51855:13427-13446 | MS.gene26012:intergenic | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | 51855:14132-14151 | MS.gene26012:intron | 25.0% |
| !!! | TTTTATTTTTTTTGCCTTGG+GGG | + | 51855:14002-14021 | MS.gene26012:intergenic | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | 51855:13530-13549 | MS.gene26012:intron | 30.0% | |
| ATCATCACATAGATGTTTAC+TGG | - | 51855:14777-14796 | MS.gene26012:intron | 30.0% | |
| CTACTCTAATTATCCTTAGT+TGG | + | 51855:14579-14598 | MS.gene26012:intergenic | 30.0% | |
| CTAGTAATACTAGAGAGATT+TGG | + | 51855:14497-14516 | MS.gene26012:intergenic | 30.0% | |
| GAGGACAATAACTTGAAAAT+TGG | - | 51855:15134-15153 | MS.gene26012:CDS | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 51855:13526-13545 | MS.gene26012:intron | 30.0% | |
| GTAAGTTGCAAAGAAACATT+TGG | - | 51855:14433-14452 | MS.gene26012:CDS | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | 51855:15029-15048 | MS.gene26012:CDS | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | 51855:15201-15220 | MS.gene26012:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 51855:13774-13793 | MS.gene26012:CDS | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 51855:13525-13544 | MS.gene26012:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | 51855:14986-15005 | MS.gene26012:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 51855:13487-13506 | MS.gene26012:intergenic | 30.0% |
| ! | ATCGTAACTTTAGGAAAGTT+AGG | - | 51855:14160-14179 | MS.gene26012:intron | 30.0% |
| ! | CATTTGTCTTTTCCTTTGAT+TGG | - | 51855:14943-14962 | MS.gene26012:intron | 30.0% |
| ! | CTTTCCTAAAGTTACGATTT+TGG | + | 51855:14158-14177 | MS.gene26012:intergenic | 30.0% |
| ! | TCGTAACTTTAGGAAAGTTA+GGG | - | 51855:14161-14180 | MS.gene26012:intron | 30.0% |
| !!! | TTTATTTTTTTTGCCTTGGG+GGG | + | 51855:14001-14020 | MS.gene26012:intergenic | 30.0% |
| AGAAGCTTCTTCTTTCACTT+GGG | + | 51855:15353-15372 | MS.gene26012:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | 51855:15036-15055 | MS.gene26012:CDS | 35.0% | |
| AGTGTTCAACTTCTCAAAGT+AGG | - | 51855:15243-15262 | MS.gene26012:CDS | 35.0% | |
| CTACAGTTGCAAAACTTAAG+GGG | + | 51855:13969-13988 | MS.gene26012:intergenic | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | 51855:13830-13849 | MS.gene26012:intergenic | 35.0% | |
| GCTACAGTTGCAAAACTTAA+GGG | + | 51855:13970-13989 | MS.gene26012:intergenic | 35.0% | |
| TACCACAAGTGCAAAACTTA+GGG | - | 51855:14102-14121 | MS.gene26012:intron | 35.0% | |
| TGCAACTTACCAGAAGAAAA+CGG | + | 51855:14423-14442 | MS.gene26012:intergenic | 35.0% | |
| TGCTACAGTTGCAAAACTTA+AGG | + | 51855:13971-13990 | MS.gene26012:intergenic | 35.0% | |
| TGGTATATTCTGCCAATCAA+AGG | + | 51855:14958-14977 | MS.gene26012:intergenic | 35.0% | |
| TGTCTATTACCAAAAATGCG+TGG | + | 51855:14978-14997 | MS.gene26012:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+GGG | - | 51855:13433-13452 | MS.gene26012:CDS | 35.0% | |
| ! | CAGAATATACCACGCATTTT+TGG | - | 51855:14966-14985 | MS.gene26012:intron | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 51855:13591-13610 | MS.gene26012:intergenic | 35.0% |
| ! | CGTAACTTTAGGAAAGTTAG+GGG | - | 51855:14162-14181 | MS.gene26012:intron | 35.0% |
| ! | GTAACTTTAGGAAAGTTAGG+GGG | - | 51855:14163-14182 | MS.gene26012:intron | 35.0% |
| ! | TTAGCTGCAACTCTTTGAAA+AGG | + | 51855:13673-13692 | MS.gene26012:intergenic | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | 51855:13975-13994 | MS.gene26012:intron | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | 51855:13728-13747 | MS.gene26012:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | 51855:14999-15018 | MS.gene26012:CDS | 35.0% |
| ACCACAAGTGCAAAACTTAG+GGG | - | 51855:14103-14122 | MS.gene26012:intron | 40.0% | |
| ACCGAGTCAAAATTGACCTT+GGG | - | 51855:14070-14089 | MS.gene26012:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 51855:13479-13498 | MS.gene26012:intron | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | 51855:15062-15081 | MS.gene26012:intergenic | 40.0% | |
| ATCGCAACTTCGTGAAAGTT+AGG | + | 51855:13915-13934 | MS.gene26012:intergenic | 40.0% | |
| CAAAAATTGCCCAGCTCAAA+TGG | - | 51855:14727-14746 | MS.gene26012:intron | 40.0% | |
| CTACCACAAGTGCAAAACTT+AGG | - | 51855:14101-14120 | MS.gene26012:intron | 40.0% | |
| GACTATGTATGCACCAACTA+AGG | - | 51855:14563-14582 | MS.gene26012:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | 51855:15354-15373 | MS.gene26012:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | 51855:15016-15035 | MS.gene26012:CDS | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+AGG | - | 51855:15355-15374 | MS.gene26012:CDS | 40.0% | |
| GTTTGTGGAGAAATATGGAG+AGG | - | 51855:13432-13451 | MS.gene26012:CDS | 40.0% | |
| TATTTCCCCTTGATACCAGT+TGG | - | 51855:14693-14712 | MS.gene26012:intron | 40.0% | |
| TCAAAGAGTTGCAGCTAAAG+AGG | - | 51855:13675-13694 | MS.gene26012:CDS | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | + | 51855:13914-13933 | MS.gene26012:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | 51855:15087-15106 | MS.gene26012:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | - | 51855:13736-13755 | MS.gene26012:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | + | 51855:13741-13760 | MS.gene26012:intergenic | 40.0% | |
| ! | CGTTAAACACCGTTTTCTTC+TGG | - | 51855:14411-14430 | MS.gene26012:CDS | 40.0% |
| ! | CTTTCACGAAGTTGCGATTT+TGG | - | 51855:13917-13936 | MS.gene26012:intron | 40.0% |
| ! | TGGGCAATTTTTGCTCAACA+AGG | + | 51855:14720-14739 | MS.gene26012:intergenic | 40.0% |
| AAATTGCCCAGCTCAAATGG+AGG | - | 51855:14730-14749 | MS.gene26012:intron | 45.0% | |
| AAGGACCAACTGGTATCAAG+GGG | + | 51855:14701-14720 | MS.gene26012:intergenic | 45.0% | |
| AATTGCCCAGCTCAAATGGA+GGG | - | 51855:14731-14750 | MS.gene26012:intron | 45.0% | |
| ACAAGGACCAACTGGTATCA+AGG | + | 51855:14703-14722 | MS.gene26012:intergenic | 45.0% | |
| ACTTTGCATCATGCTGACAG+AGG | - | 51855:13802-13821 | MS.gene26012:CDS | 45.0% | |
| ATGTTAGACTCTCAGGTGGA+TGG | - | 51855:15099-15118 | MS.gene26012:CDS | 45.0% | |
| CAAGGACCAACTGGTATCAA+GGG | + | 51855:14702-14721 | MS.gene26012:intergenic | 45.0% | |
| CAGTTGCAAAACTTAAGGGG+CGG | + | 51855:13966-13985 | MS.gene26012:intergenic | 45.0% | |
| CCACAAGTGCAAAACTTAGG+GGG | - | 51855:14104-14123 | MS.gene26012:intron | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | - | 51855:13745-13764 | MS.gene26012:CDS | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | + | 51855:13748-13767 | MS.gene26012:intergenic | 45.0% | |
| CCGAGTCAAAATTGACCTTG+GGG | - | 51855:14071-14090 | MS.gene26012:intron | 45.0% | |
| CGAGTCAAAATTGACCTTGG+GGG | - | 51855:14072-14091 | MS.gene26012:intron | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | + | 51855:13913-13932 | MS.gene26012:intergenic | 45.0% | |
| CGCATGACAACAAGAAAGGA+TGG | + | 51855:14382-14401 | MS.gene26012:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | 51855:15071-15090 | MS.gene26012:CDS | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | 51855:15073-15092 | MS.gene26012:intergenic | 45.0% | |
| CTTTGCATCATGCTGACAGA+GGG | - | 51855:13803-13822 | MS.gene26012:CDS | 45.0% | |
| GACCGAGTCAAAATTGACCT+TGG | - | 51855:14069-14088 | MS.gene26012:intron | 45.0% | |
| GAGTATCATTCTCGAGCTCA+TGG | - | 51855:13565-13584 | MS.gene26012:CDS | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | + | 51855:13912-13931 | MS.gene26012:intergenic | 45.0% | |
| GGGGCCAAAATCGTAACTTT+AGG | - | 51855:14151-14170 | MS.gene26012:intron | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | 51855:15088-15107 | MS.gene26012:intergenic | 45.0% | |
| TAGAACCCTCCATTTGAGCT+GGG | + | 51855:14739-14758 | MS.gene26012:intergenic | 45.0% | |
| TGCACGCATGACAACAAGAA+AGG | + | 51855:14386-14405 | MS.gene26012:intergenic | 45.0% | |
| TTAGAACCCTCCATTTGAGC+TGG | + | 51855:14740-14759 | MS.gene26012:intergenic | 45.0% | |
| TTTGCTCAACAAGGACCAAC+TGG | + | 51855:14711-14730 | MS.gene26012:intergenic | 45.0% | |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 51855:13682-13701 | MS.gene26012:CDS | 45.0% |
| !!! | CCCCAAGGTCAATTTTGACT+CGG | + | 51855:14074-14093 | MS.gene26012:intergenic | 45.0% |
| AACACGTGGCACCTCACTTA+GGG | - | 51855:14031-14050 | MS.gene26012:intron | 50.0% | |
| CAAGTGCAAAACTTAGGGGG+CGG | - | 51855:14107-14126 | MS.gene26012:intron | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | 51855:15095-15114 | MS.gene26012:CDS | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | 51855:15098-15117 | MS.gene26012:intergenic | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | 51855:15092-15111 | MS.gene26012:CDS | 50.0% | |
| TAACACGTGGCACCTCACTT+AGG | - | 51855:14030-14049 | MS.gene26012:intron | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | 51855:15103-15122 | MS.gene26012:CDS | 50.0% | |
| ! | CCCCCTAAGTTTTGCACTTG+TGG | + | 51855:14107-14126 | MS.gene26012:intergenic | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | 51855:15057-15076 | MS.gene26012:CDS | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | 51855:15115-15134 | MS.gene26012:CDS | 50.0% |
| !!! | TGTGGTAGTTTTGACCCCCA+AGG | + | 51855:14089-14108 | MS.gene26012:intergenic | 50.0% |
| CCTACGTGGTTCCCTAAGTG+AGG | + | 51855:14045-14064 | MS.gene26012:intergenic | 55.0% | |
| CCTCACTTAGGGAACCACGT+AGG | - | 51855:14042-14061 | MS.gene26012:intron | 55.0% | |
| CATGCTGACAGAGGGTCCAG+AGG | - | 51855:13811-13830 | MS.gene26012:CDS | 60.0% | |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | - | 51855:13985-14004 | MS.gene26012:intron | 60.0% |
| !! | TGACTCGGTCTACGCCTACG+TGG | + | 51855:14059-14078 | MS.gene26012:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51855 | gene | 13418 | 15381 | 13418 | ID=MS.gene26012 |
| 51855 | mRNA | 13418 | 15381 | 13418 | ID=MS.gene26012.t1;Parent=MS.gene26012 |
| 51855 | exon | 14967 | 15381 | 14967 | ID=MS.gene26012.t1.exon1;Parent=MS.gene26012.t1 |
| 51855 | CDS | 14967 | 15381 | 14967 | ID=cds.MS.gene26012.t1;Parent=MS.gene26012.t1 |
| 51855 | exon | 14367 | 14488 | 14367 | ID=MS.gene26012.t1.exon2;Parent=MS.gene26012.t1 |
| 51855 | CDS | 14367 | 14488 | 14367 | ID=cds.MS.gene26012.t1;Parent=MS.gene26012.t1 |
| 51855 | exon | 13539 | 13830 | 13539 | ID=MS.gene26012.t1.exon3;Parent=MS.gene26012.t1 |
| 51855 | CDS | 13539 | 13830 | 13539 | ID=cds.MS.gene26012.t1;Parent=MS.gene26012.t1 |
| 51855 | exon | 13418 | 13455 | 13418 | ID=MS.gene26012.t1.exon4;Parent=MS.gene26012.t1 |
| 51855 | CDS | 13418 | 13455 | 13418 | ID=cds.MS.gene26012.t1;Parent=MS.gene26012.t1 |
| Gene Sequence |
| Protein sequence |
