Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26014.t1 | XP_003622663.1 | 87.7 | 302 | 31 | 1 | 3 | 298 | 2 | 303 | 4.40E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26014.t1 | Q8L3W1 | 28.9 | 339 | 166 | 5 | 14 | 285 | 6 | 336 | 1.3e-29 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26014.t1 | G7KVV4 | 87.7 | 302 | 31 | 1 | 3 | 298 | 2 | 303 | 3.2e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26014.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26014.t1 | MTR_7g050560 | 88.158 | 304 | 29 | 2 | 1 | 298 | 1 | 303 | 0.0 | 545 |
| MS.gene26014.t1 | MTR_7g050590 | 75.427 | 293 | 49 | 3 | 29 | 298 | 1 | 293 | 6.53e-158 | 442 |
| MS.gene26014.t1 | MTR_3g098790 | 66.352 | 318 | 78 | 5 | 3 | 298 | 2 | 312 | 6.38e-145 | 410 |
| MS.gene26014.t1 | MTR_7g050580 | 66.771 | 319 | 69 | 6 | 1 | 298 | 1 | 303 | 1.65e-143 | 406 |
| MS.gene26014.t1 | MTR_7g050710 | 66.149 | 322 | 83 | 6 | 1 | 298 | 1 | 320 | 6.83e-143 | 405 |
| MS.gene26014.t1 | MTR_7g050720 | 62.102 | 314 | 85 | 7 | 8 | 287 | 4 | 317 | 4.69e-128 | 367 |
| MS.gene26014.t1 | MTR_8g103940 | 37.377 | 305 | 150 | 6 | 12 | 285 | 37 | 331 | 7.65e-55 | 185 |
| MS.gene26014.t1 | MTR_1g108780 | 35.069 | 288 | 145 | 7 | 30 | 285 | 13 | 290 | 4.58e-50 | 172 |
| MS.gene26014.t1 | MTR_1g035460 | 34.899 | 298 | 142 | 7 | 29 | 285 | 1 | 287 | 6.74e-48 | 165 |
| MS.gene26014.t1 | MTR_7g050640 | 68.750 | 112 | 35 | 0 | 3 | 114 | 2 | 113 | 2.31e-47 | 155 |
| MS.gene26014.t1 | MTR_5g044670 | 33.333 | 303 | 170 | 8 | 14 | 292 | 16 | 310 | 7.24e-44 | 152 |
| MS.gene26014.t1 | MTR_3g061370 | 35.374 | 294 | 150 | 10 | 12 | 284 | 7 | 281 | 4.89e-43 | 149 |
| MS.gene26014.t1 | MTR_3g061320 | 34.343 | 297 | 146 | 10 | 11 | 284 | 9 | 279 | 7.26e-43 | 148 |
| MS.gene26014.t1 | MTR_3g061350 | 33.224 | 304 | 163 | 10 | 1 | 284 | 1 | 284 | 3.36e-42 | 147 |
| MS.gene26014.t1 | MTR_3g061340 | 32.632 | 285 | 162 | 9 | 11 | 284 | 9 | 274 | 1.29e-37 | 134 |
| MS.gene26014.t1 | MTR_3g061310 | 31.359 | 287 | 174 | 8 | 11 | 284 | 9 | 285 | 3.72e-35 | 128 |
| MS.gene26014.t1 | MTR_1g035620 | 31.271 | 291 | 163 | 9 | 11 | 283 | 6 | 277 | 5.39e-35 | 131 |
| MS.gene26014.t1 | MTR_5g070440 | 27.835 | 291 | 170 | 7 | 6 | 288 | 13 | 271 | 1.16e-33 | 124 |
| MS.gene26014.t1 | MTR_6g043890 | 32.281 | 285 | 162 | 8 | 12 | 271 | 13 | 291 | 6.62e-33 | 124 |
| MS.gene26014.t1 | MTR_1g050845 | 31.359 | 287 | 156 | 6 | 11 | 283 | 6 | 265 | 9.10e-33 | 127 |
| MS.gene26014.t1 | MTR_3g061330 | 32.787 | 244 | 131 | 7 | 11 | 236 | 9 | 237 | 9.72e-33 | 121 |
| MS.gene26014.t1 | MTR_3g005480 | 28.070 | 285 | 155 | 7 | 13 | 288 | 20 | 263 | 1.37e-32 | 121 |
| MS.gene26014.t1 | MTR_1g035640 | 33.333 | 282 | 164 | 9 | 14 | 283 | 9 | 278 | 3.76e-32 | 124 |
| MS.gene26014.t1 | MTR_3g005490 | 27.055 | 292 | 162 | 6 | 6 | 288 | 13 | 262 | 1.77e-31 | 118 |
| MS.gene26014.t1 | MTR_4g119990 | 29.934 | 304 | 177 | 7 | 12 | 284 | 13 | 311 | 2.63e-30 | 117 |
| MS.gene26014.t1 | MTR_3g061290 | 52.941 | 102 | 46 | 1 | 11 | 112 | 9 | 108 | 2.95e-30 | 113 |
| MS.gene26014.t1 | MTR_6g061070 | 29.560 | 318 | 175 | 10 | 8 | 284 | 12 | 321 | 3.83e-29 | 115 |
| MS.gene26014.t1 | MTR_1g035570 | 30.714 | 280 | 171 | 6 | 23 | 285 | 14 | 287 | 1.02e-28 | 114 |
| MS.gene26014.t1 | MTR_3g005460 | 27.273 | 297 | 180 | 9 | 1 | 288 | 251 | 520 | 4.27e-26 | 107 |
| MS.gene26014.t1 | MTR_3g005460 | 24.549 | 277 | 144 | 6 | 13 | 280 | 24 | 244 | 4.17e-20 | 90.5 |
| MS.gene26014.t1 | MTR_3g005420 | 28.374 | 289 | 179 | 6 | 1 | 288 | 278 | 539 | 8.71e-26 | 107 |
| MS.gene26014.t1 | MTR_3g005420 | 24.254 | 268 | 154 | 7 | 7 | 272 | 33 | 253 | 4.28e-16 | 78.6 |
| MS.gene26014.t1 | MTR_1g021360 | 29.181 | 281 | 174 | 9 | 12 | 272 | 182 | 457 | 1.84e-22 | 97.1 |
| MS.gene26014.t1 | MTR_1g034240 | 37.500 | 120 | 72 | 1 | 14 | 133 | 7 | 123 | 4.01e-22 | 95.9 |
| MS.gene26014.t1 | MTR_1g034240 | 31.579 | 133 | 84 | 3 | 160 | 291 | 272 | 398 | 8.39e-13 | 68.6 |
| MS.gene26014.t1 | MTR_1g035480 | 34.054 | 185 | 107 | 6 | 9 | 192 | 12 | 182 | 5.94e-22 | 90.9 |
| MS.gene26014.t1 | MTR_4g068320 | 41.905 | 105 | 59 | 1 | 14 | 116 | 6 | 110 | 1.18e-21 | 94.7 |
| MS.gene26014.t1 | MTR_4g068320 | 29.944 | 177 | 106 | 5 | 115 | 290 | 234 | 393 | 1.44e-13 | 70.9 |
| MS.gene26014.t1 | MTR_3g061220 | 43.137 | 102 | 43 | 2 | 11 | 112 | 9 | 95 | 3.90e-21 | 87.0 |
| MS.gene26014.t1 | MTR_3g005495 | 30.916 | 262 | 137 | 9 | 13 | 272 | 242 | 461 | 1.62e-20 | 91.7 |
| MS.gene26014.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 30 | 115 | 29 | 114 | 1.40e-16 | 80.1 |
| MS.gene26014.t1 | MTR_1g035650 | 30.734 | 218 | 104 | 5 | 11 | 201 | 6 | 203 | 1.47e-19 | 85.1 |
| MS.gene26014.t1 | MTR_1g035440 | 43.810 | 105 | 58 | 1 | 12 | 115 | 13 | 117 | 2.72e-18 | 82.8 |
| MS.gene26014.t1 | MTR_1g035500 | 35.570 | 149 | 88 | 4 | 8 | 156 | 19 | 159 | 3.13e-18 | 81.3 |
| MS.gene26014.t1 | MTR_1g021400 | 23.512 | 336 | 198 | 9 | 12 | 293 | 28 | 358 | 3.66e-18 | 84.0 |
| MS.gene26014.t1 | MTR_1g033740 | 35.556 | 135 | 80 | 3 | 10 | 144 | 18 | 145 | 2.32e-17 | 79.0 |
| MS.gene26014.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 14 | 112 | 7 | 103 | 4.88e-17 | 80.5 |
| MS.gene26014.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 14 | 112 | 7 | 103 | 6.43e-17 | 80.5 |
| MS.gene26014.t1 | MTR_1g035510 | 37.903 | 124 | 67 | 4 | 29 | 152 | 1 | 114 | 3.86e-16 | 76.3 |
| MS.gene26014.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 28 | 115 | 34 | 121 | 4.27e-16 | 78.6 |
| MS.gene26014.t1 | MTR_3g005440 | 27.179 | 195 | 125 | 3 | 13 | 206 | 241 | 419 | 2.75e-14 | 73.2 |
| MS.gene26014.t1 | MTR_3g005420 | 24.254 | 268 | 154 | 7 | 7 | 272 | 14 | 234 | 5.03e-16 | 78.6 |
| MS.gene26014.t1 | MTR_1g035520 | 26.885 | 305 | 164 | 9 | 29 | 283 | 87 | 382 | 8.13e-16 | 77.4 |
| MS.gene26014.t1 | MTR_1g035470 | 37.903 | 124 | 68 | 5 | 29 | 152 | 1 | 115 | 3.43e-14 | 68.9 |
| MS.gene26014.t1 | MTR_1g021380 | 30.409 | 171 | 96 | 2 | 13 | 179 | 16 | 167 | 4.95e-14 | 72.0 |
| MS.gene26014.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 9.36e-14 | 70.5 |
| MS.gene26014.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 1.46e-13 | 70.1 |
| MS.gene26014.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 2.20e-13 | 70.1 |
| MS.gene26014.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 2.98e-13 | 69.7 |
| MS.gene26014.t1 | MTR_1g021320 | 26.531 | 196 | 111 | 6 | 12 | 178 | 182 | 373 | 6.02e-12 | 66.6 |
| MS.gene26014.t1 | MTR_1g021320 | 30.137 | 146 | 91 | 2 | 12 | 146 | 23 | 168 | 2.64e-11 | 64.7 |
| MS.gene26014.t1 | MTR_1g021270 | 28.571 | 182 | 113 | 6 | 123 | 298 | 191 | 361 | 1.94e-11 | 64.7 |
| MS.gene26014.t1 | MTR_1g021270 | 30.189 | 106 | 73 | 1 | 9 | 114 | 11 | 115 | 3.55e-11 | 63.9 |
| MS.gene26014.t1 | MTR_1g021290 | 32.979 | 94 | 62 | 1 | 15 | 108 | 157 | 249 | 7.73e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26014.t1 | AT3G18990 | 28.070 | 342 | 171 | 5 | 14 | 288 | 6 | 339 | 1.71e-35 | 131 |
| MS.gene26014.t1 | AT3G18990 | 27.353 | 340 | 170 | 7 | 14 | 285 | 6 | 336 | 9.07e-30 | 115 |
| MS.gene26014.t1 | AT4G01580 | 41.739 | 115 | 67 | 0 | 3 | 117 | 19 | 133 | 1.66e-24 | 98.2 |
| MS.gene26014.t1 | AT3G18960 | 40.870 | 115 | 68 | 0 | 3 | 117 | 19 | 133 | 2.76e-23 | 95.1 |
| MS.gene26014.t1 | AT3G18960 | 40.870 | 115 | 68 | 0 | 3 | 117 | 19 | 133 | 4.99e-23 | 94.7 |
| MS.gene26014.t1 | AT1G49475 | 42.342 | 111 | 61 | 2 | 7 | 115 | 25 | 134 | 4.91e-22 | 91.7 |
| MS.gene26014.t1 | AT4G33280 | 25.879 | 313 | 193 | 12 | 12 | 293 | 23 | 327 | 2.38e-19 | 87.0 |
| MS.gene26014.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 30 | 117 | 9 | 96 | 2.45e-18 | 81.3 |
| MS.gene26014.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.11e-13 | 69.3 |
| MS.gene26014.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.11e-13 | 69.3 |
| MS.gene26014.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.11e-13 | 69.3 |
Find 0 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTTAAAATAAAAAATTA+AGG | + | 51666:6204-6223 | MS.gene26014:intergenic | 10.0% |
| !! | ATATTATCACAAATGTTTAT+TGG | - | 51666:7902-7921 | MS.gene26014:intron | 15.0% |
| !!! | ATTTATTTGTTGTTAAATGA+AGG | - | 51666:8123-8142 | MS.gene26014:intron | 15.0% |
| !!! | CTTTGATAATAATAATTCTT+AGG | + | 51666:7667-7686 | MS.gene26014:intergenic | 15.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | + | 51666:8011-8030 | MS.gene26014:intergenic | 20.0% |
| !! | AATAATAATTCTTAGGAGTT+AGG | + | 51666:7660-7679 | MS.gene26014:intergenic | 20.0% |
| !! | ATAATTAAGAAAAATGCACA+TGG | - | 51666:6327-6346 | MS.gene26014:intron | 20.0% |
| !! | ATTATCTTGAAAAAATGGAT+TGG | + | 51666:5778-5797 | MS.gene26014:intergenic | 20.0% |
| !! | CAAGTATTATCTTGAAAAAA+TGG | + | 51666:5783-5802 | MS.gene26014:intergenic | 20.0% |
| !! | TAAGGAAAAAAAGTTCAAAT+TGG | + | 51666:6186-6205 | MS.gene26014:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 51666:6724-6743 | MS.gene26014:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | 51666:6737-6756 | MS.gene26014:CDS | 20.0% |
| !!! | AATTACTTACTTTTCTAATC+AGG | + | 51666:6547-6566 | MS.gene26014:intergenic | 20.0% |
| !!! | ACAAATTTTTTTCCTCAAAA+GGG | - | 51666:6378-6397 | MS.gene26014:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | - | 51666:6747-6766 | MS.gene26014:intron | 20.0% |
| !!! | TTTTCTGATAAATGTGATTT+AGG | - | 51666:6566-6585 | MS.gene26014:intron | 20.0% |
| ! | AAAAAAAAAATGTCGCTACA+TGG | - | 51666:6152-6171 | MS.gene26014:intron | 25.0% |
| ! | AAACAAAATGAACGAAATGA+TGG | - | 51666:7687-7706 | MS.gene26014:intron | 25.0% |
| ! | AAATATGGTTTGAAAAAGGT+TGG | - | 51666:6762-6781 | MS.gene26014:intron | 25.0% |
| ! | AGAAAGTTTGTAGAGAAATA+TGG | - | 51666:6659-6678 | MS.gene26014:CDS | 25.0% |
| ! | ATATAAATGCTATCTAACAG+GGG | - | 51666:6300-6319 | MS.gene26014:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 51666:6701-6720 | MS.gene26014:CDS | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | + | 51666:6888-6907 | MS.gene26014:intergenic | 25.0% |
| ! | GATATAAATGCTATCTAACA+GGG | - | 51666:6299-6318 | MS.gene26014:intron | 25.0% |
| ! | GGAAAAATATGGTTTGAAAA+AGG | - | 51666:6758-6777 | MS.gene26014:intron | 25.0% |
| ! | TACTATCATGCATACTAATT+TGG | - | 51666:6611-6630 | MS.gene26014:intron | 25.0% |
| ! | TATTATGACACAAGATTTGT+TGG | - | 51666:5941-5960 | MS.gene26014:CDS | 25.0% |
| ! | TATTTCTCTACAAACTTTCT+TGG | + | 51666:6659-6678 | MS.gene26014:intergenic | 25.0% |
| ! | TGAAGTTGAGAAATTGAATA+AGG | - | 51666:6991-7010 | MS.gene26014:intron | 25.0% |
| ! | TGATATAAATGCTATCTAAC+AGG | - | 51666:6298-6317 | MS.gene26014:intron | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 51666:7315-7334 | MS.gene26014:intergenic | 25.0% |
| ! | TGCATATGAGCTTATATTTA+GGG | - | 51666:6355-6374 | MS.gene26014:intron | 25.0% |
| ! | TGTAAATAAAAAGTCGAGTT+TGG | - | 51666:6405-6424 | MS.gene26014:intron | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | 51666:8130-8149 | MS.gene26014:intron | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | - | 51666:7315-7334 | MS.gene26014:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 51666:7314-7333 | MS.gene26014:CDS | 25.0% |
| !! | TTATTTGAGATAGGACTTAT+AGG | + | 51666:6023-6042 | MS.gene26014:intergenic | 25.0% |
| !!! | CAAATTTTTTTCCTCAAAAG+GGG | - | 51666:6379-6398 | MS.gene26014:intron | 25.0% |
| !!! | GACAAATTTTTTTCCTCAAA+AGG | - | 51666:6377-6396 | MS.gene26014:intron | 25.0% |
| !!! | GCATATTTGTTATTTGAGAT+AGG | + | 51666:6032-6051 | MS.gene26014:intergenic | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | - | 51666:6224-6243 | MS.gene26014:intron | 30.0% | |
| AACCAGCAAGTAATTAACTT+GGG | - | 51666:6225-6244 | MS.gene26014:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | 51666:8228-8247 | MS.gene26014:intron | 30.0% | |
| ACAAATATGCCGAAATTGTT+AGG | - | 51666:6042-6061 | MS.gene26014:intron | 30.0% | |
| ATCAAACTGTAGTCCTTTAA+GGG | + | 51666:8181-8200 | MS.gene26014:intergenic | 30.0% | |
| CAGAATATACCAGTTAAGTT+TGG | - | 51666:8063-8082 | MS.gene26014:intron | 30.0% | |
| CTAGTCCATCATAAAATTAG+TGG | + | 51666:6432-6451 | MS.gene26014:intergenic | 30.0% | |
| CTGCATATGAGCTTATATTT+AGG | - | 51666:6354-6373 | MS.gene26014:intron | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | 51666:6823-6842 | MS.gene26014:intergenic | 30.0% | |
| TAGCATGTATCATGACATAT+TGG | - | 51666:6253-6272 | MS.gene26014:intron | 30.0% | |
| TCTAAAGATGTGAACAATGA+AGG | + | 51666:8295-8314 | MS.gene26014:intergenic | 30.0% | |
| TGCAACTTACCATAAGAAAT+CGG | + | 51666:7448-7467 | MS.gene26014:intergenic | 30.0% | |
| TTATGTGTGTGAGTTTATGA+TGG | - | 51666:6105-6124 | MS.gene26014:intron | 30.0% | |
| TTGTAGGCTAATGAAACTAT+GGG | - | 51666:6462-6481 | MS.gene26014:intron | 30.0% | |
| TTTGTAGAGAAATATGGAGA+AGG | - | 51666:6665-6684 | MS.gene26014:CDS | 30.0% | |
| TTTGTAGGCTAATGAAACTA+TGG | - | 51666:6461-6480 | MS.gene26014:intron | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | + | 51666:6225-6244 | MS.gene26014:intergenic | 30.0% |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 51666:6719-6738 | MS.gene26014:intergenic | 30.0% |
| ! | ATTTGTTGGTCATAGTTTGT+GGG | - | 51666:5955-5974 | MS.gene26014:CDS | 30.0% |
| ! | CGTTTGTCTTTTCTTTTGAT+TGG | - | 51666:8040-8059 | MS.gene26014:intron | 30.0% |
| ! | GTTTCATTAGCCTACAAATT+TGG | + | 51666:6459-6478 | MS.gene26014:intergenic | 30.0% |
| ! | TTGAGTTAGTTTCTTTGTTC+AGG | - | 51666:5874-5893 | MS.gene26014:CDS | 30.0% |
| ! | TTGGTCCACTAATTTTATGA+TGG | - | 51666:6424-6443 | MS.gene26014:intron | 30.0% |
| !! | AATTGACATACAGTTTTAGC+TGG | + | 51666:7217-7236 | MS.gene26014:intergenic | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | 51666:8096-8115 | MS.gene26014:intron | 30.0% |
| !!! | AAACGACATACATTTTTAGC+AGG | - | 51666:7245-7264 | MS.gene26014:CDS | 30.0% |
| AACTGTATGTCAATTCAACG+TGG | - | 51666:7222-7241 | MS.gene26014:CDS | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | + | 51666:7603-7622 | MS.gene26014:intergenic | 35.0% | |
| ACTATTGTAGAACAGCTATC+AGG | - | 51666:7187-7206 | MS.gene26014:CDS | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | + | 51666:7604-7623 | MS.gene26014:intergenic | 35.0% | |
| CATAAACTCACACACATAAG+TGG | + | 51666:6104-6123 | MS.gene26014:intergenic | 35.0% | |
| CTATTGTAGAACAGCTATCA+GGG | - | 51666:7188-7207 | MS.gene26014:CDS | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | 51666:5799-5818 | MS.gene26014:CDS | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | + | 51666:7613-7632 | MS.gene26014:intergenic | 35.0% | |
| GATCAAACTGTAGTCCTTTA+AGG | + | 51666:8182-8201 | MS.gene26014:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | 51666:7457-7476 | MS.gene26014:intron | 35.0% | |
| TACCCAAGTTAATTACTTGC+TGG | + | 51666:6230-6249 | MS.gene26014:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | 51666:7595-7614 | MS.gene26014:intron | 35.0% | |
| TGGTAAGACACACTTTGATT+TGG | - | 51666:8083-8102 | MS.gene26014:intron | 35.0% | |
| TGTGTCTTACCAAACTTAAC+TGG | + | 51666:8075-8094 | MS.gene26014:intergenic | 35.0% | |
| TGTTCTACAATAGTTCCGAA+GGG | + | 51666:7181-7200 | MS.gene26014:intergenic | 35.0% | |
| ! | TATTTACAAGTCCCCTTTTG+AGG | + | 51666:6393-6412 | MS.gene26014:intergenic | 35.0% |
| ! | TCATTAGCCTACAAATTTGG+TGG | + | 51666:6456-6475 | MS.gene26014:intergenic | 35.0% |
| !! | GATTTGTTGGTCATAGTTTG+TGG | - | 51666:5954-5973 | MS.gene26014:CDS | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | 51666:6945-6964 | MS.gene26014:intergenic | 35.0% |
| !!! | TCTTTTTAGCTGCAACTCTT+TGG | + | 51666:6910-6929 | MS.gene26014:intergenic | 35.0% |
| AAACTCACACACATAAGTGG+AGG | + | 51666:6101-6120 | MS.gene26014:intergenic | 40.0% | |
| AAAGAATTGCCCAGCTCAAA+TGG | - | 51666:7629-7648 | MS.gene26014:intron | 40.0% | |
| ACTGCCCTCTAACTATTACT+TGG | - | 51666:7817-7836 | MS.gene26014:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 51666:6711-6730 | MS.gene26014:CDS | 40.0% | |
| AGTTTGATCTCACAACTGGA+TGG | - | 51666:8193-8212 | MS.gene26014:intron | 40.0% | |
| ATATGCCGAAATTGTTAGGC+CGG | - | 51666:6046-6065 | MS.gene26014:intron | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | 51666:8156-8175 | MS.gene26014:intergenic | 40.0% | |
| ATTGGACTACCGAAATGGAA+GGG | - | 51666:6271-6290 | MS.gene26014:intron | 40.0% | |
| CAGCCCAAGTAATAGTTAGA+GGG | + | 51666:7824-7843 | MS.gene26014:intergenic | 40.0% | |
| CTAATCAGGATGACCCTTAA+AGG | - | 51666:8165-8184 | MS.gene26014:intron | 40.0% | |
| CTACAGTTTGATCTCACAAC+TGG | - | 51666:8189-8208 | MS.gene26014:intron | 40.0% | |
| CTATTGCTTCCAATTTCACG+TGG | + | 51666:6965-6984 | MS.gene26014:intergenic | 40.0% | |
| CTGCCCTCTAACTATTACTT+GGG | - | 51666:7818-7837 | MS.gene26014:intron | 40.0% | |
| CTGTTCTACAATAGTTCCGA+AGG | + | 51666:7182-7201 | MS.gene26014:intergenic | 40.0% | |
| GACATATTGGACTACCGAAA+TGG | - | 51666:6266-6285 | MS.gene26014:intron | 40.0% | |
| GACTAGACCACCAAATTTGT+AGG | - | 51666:6446-6465 | MS.gene26014:intron | 40.0% | |
| TATCAATCGCCCTTCCATTT+CGG | + | 51666:6283-6302 | MS.gene26014:intergenic | 40.0% | |
| TATTGGACTACCGAAATGGA+AGG | - | 51666:6270-6289 | MS.gene26014:intron | 40.0% | |
| TGCAGCCTGTTTACTCAATT+CGG | - | 51666:6489-6508 | MS.gene26014:intron | 40.0% | |
| TTCCAATTTCACGTGGTTGA+TGG | + | 51666:6958-6977 | MS.gene26014:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+TGG | - | 51666:6953-6972 | MS.gene26014:intron | 40.0% | |
| TTCTTTCCATGATGTGTCGA+TGG | - | 51666:7142-7161 | MS.gene26014:CDS | 40.0% | |
| ! | CTTTAAGGGTCATCCTGATT+AGG | + | 51666:8167-8186 | MS.gene26014:intergenic | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | + | 51666:6905-6924 | MS.gene26014:intergenic | 40.0% |
| AATTGCCCAGCTCAAATGGA+GGG | - | 51666:7633-7652 | MS.gene26014:intron | 45.0% | |
| AGGCTAATGAAACTATGGGC+TGG | - | 51666:6466-6485 | MS.gene26014:intron | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | 51666:7407-7426 | MS.gene26014:intergenic | 45.0% | |
| GCAGCCCAAGTAATAGTTAG+AGG | + | 51666:7825-7844 | MS.gene26014:intergenic | 45.0% | |
| GCAGCGACATAGATGAGTAA+AGG | + | 51666:5996-6015 | MS.gene26014:intergenic | 45.0% | |
| GGACGAAGTTCAAATCCCTT+CGG | - | 51666:7163-7182 | MS.gene26014:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | - | 51666:7013-7032 | MS.gene26014:intron | 45.0% | |
| TGATCTCACAACTGGATGGA+AGG | - | 51666:8197-8216 | MS.gene26014:intron | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | 51666:7411-7430 | MS.gene26014:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | 51666:6498-6517 | MS.gene26014:intron | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | 51666:7487-7506 | MS.gene26014:intron | 45.0% |
| ! | ACACACATAAGTGGAGGTGT+CGG | + | 51666:6095-6114 | MS.gene26014:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | 51666:6515-6534 | MS.gene26014:intergenic | 45.0% |
| ! | GATCATCACTCTCTAGCTCA+TGG | - | 51666:6797-6816 | MS.gene26014:intron | 45.0% |
| !! | AAATGGATTGGCTTCACCTC+AGG | + | 51666:5766-5785 | MS.gene26014:intergenic | 45.0% |
| !! | CGTGGAACACCGATTTCTTA+TGG | - | 51666:7436-7455 | MS.gene26014:intron | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | 51666:8209-8228 | MS.gene26014:intron | 45.0% |
| !! | TTGGCTTGGACAAGTTAGGT+CGG | - | 51666:6517-6536 | MS.gene26014:intron | 45.0% |
| CTTCGTCCATCGACACATCA+TGG | + | 51666:7151-7170 | MS.gene26014:intergenic | 50.0% | |
| GAATTGCCCAGCTCAAATGG+AGG | - | 51666:7632-7651 | MS.gene26014:intron | 50.0% | |
| GACGTCCGGCCTAACAATTT+CGG | + | 51666:6054-6073 | MS.gene26014:intergenic | 50.0% | |
| GGCTAGTGATGAAACTCCTG+AGG | - | 51666:5747-5766 | MS.gene26014:CDS | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | 51666:6497-6516 | MS.gene26014:intergenic | 50.0% | |
| TAGGACCCTCCATTTGAGCT+GGG | + | 51666:7641-7660 | MS.gene26014:intergenic | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | - | 51666:7418-7437 | MS.gene26014:CDS | 50.0% | |
| TTAGGACCCTCCATTTGAGC+TGG | + | 51666:7642-7661 | MS.gene26014:intergenic | 50.0% | |
| ! | CCTAACTTGTCCAAGCCAAG+TGG | + | 51666:6516-6535 | MS.gene26014:intergenic | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | 51666:8151-8170 | MS.gene26014:intron | 50.0% |
| ! | TGGCTTGGACAAGTTAGGTC+GGG | - | 51666:6518-6537 | MS.gene26014:intron | 50.0% |
| !! | ACACATAAGTGGAGGTGTCG+GGG | + | 51666:6093-6112 | MS.gene26014:intergenic | 50.0% |
| !! | CACACATAAGTGGAGGTGTC+GGG | + | 51666:6094-6113 | MS.gene26014:intergenic | 50.0% |
| !! | CCACTTGGCTTGGACAAGTT+AGG | - | 51666:6513-6532 | MS.gene26014:intron | 50.0% |
| GTTAGGCCGGACGTCATGAT+CGG | - | 51666:6059-6078 | MS.gene26014:intron | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | 51666:6503-6522 | MS.gene26014:intron | 55.0% | |
| TTAGGCCGGACGTCATGATC+GGG | - | 51666:6060-6079 | MS.gene26014:intron | 55.0% | |
| ! | CATGCTGGCAGAGAGTGCAA+AGG | - | 51666:7028-7047 | MS.gene26014:intron | 55.0% |
| CGAACCCCGATCATGACGTC+CGG | + | 51666:6068-6087 | MS.gene26014:intergenic | 60.0% | |
| TAGGCCGGACGTCATGATCG+GGG | - | 51666:6061-6080 | MS.gene26014:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51666 | gene | 5745 | 8354 | 5745 | ID=MS.gene26014 |
| 51666 | mRNA | 5745 | 8354 | 5745 | ID=MS.gene26014.t1;Parent=MS.gene26014 |
| 51666 | exon | 8271 | 8354 | 8271 | ID=MS.gene26014.t1.exon1;Parent=MS.gene26014.t1 |
| 51666 | CDS | 8271 | 8354 | 8271 | ID=cds.MS.gene26014.t1;Parent=MS.gene26014.t1 |
| 51666 | exon | 7050 | 7449 | 7050 | ID=MS.gene26014.t1.exon2;Parent=MS.gene26014.t1 |
| 51666 | CDS | 7050 | 7449 | 7050 | ID=cds.MS.gene26014.t1;Parent=MS.gene26014.t1 |
| 51666 | exon | 6642 | 6763 | 6642 | ID=MS.gene26014.t1.exon3;Parent=MS.gene26014.t1 |
| 51666 | CDS | 6642 | 6763 | 6642 | ID=cds.MS.gene26014.t1;Parent=MS.gene26014.t1 |
| 51666 | exon | 5745 | 6033 | 5745 | ID=MS.gene26014.t1.exon4;Parent=MS.gene26014.t1 |
| 51666 | CDS | 5745 | 6033 | 5745 | ID=cds.MS.gene26014.t1;Parent=MS.gene26014.t1 |
| Gene Sequence |
| Protein sequence |
