Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26050.t1 | XP_024630916.1 | 90.9 | 751 | 63 | 1 | 1 | 746 | 1 | 751 | 0.00E+00 | 1374.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26050.t1 | Q9SZL8 | 34.8 | 644 | 408 | 7 | 21 | 655 | 60 | 700 | 1.2e-106 | 389.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26050.t1 | A0A3Q7Y261 | 79.8 | 722 | 143 | 1 | 3 | 724 | 5 | 723 | 0.0e+00 | 1184.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26050.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26050.t1 | MTR_0402s0040 | 57.923 | 366 | 81 | 6 | 394 | 759 | 200 | 492 | 2.70e-120 | 370 |
MS.gene26050.t1 | MTR_0402s0040 | 77.500 | 200 | 44 | 1 | 10 | 209 | 2 | 200 | 1.99e-101 | 322 |
MS.gene26050.t1 | MTR_7g113010 | 83.019 | 159 | 13 | 1 | 1 | 159 | 424 | 568 | 1.17e-82 | 275 |
MS.gene26050.t1 | MTR_1g057920 | 94.309 | 123 | 7 | 0 | 1 | 123 | 1 | 123 | 2.24e-78 | 248 |
MS.gene26050.t1 | MTR_6g017200 | 78.049 | 123 | 27 | 0 | 8 | 130 | 32 | 154 | 1.97e-60 | 201 |
MS.gene26050.t1 | MTR_5g015480 | 61.963 | 163 | 58 | 1 | 1 | 163 | 27 | 185 | 1.15e-57 | 197 |
MS.gene26050.t1 | MTR_2g070590 | 76.068 | 117 | 28 | 0 | 20 | 136 | 3 | 119 | 9.79e-55 | 184 |
MS.gene26050.t1 | MTR_0558s0020 | 33.603 | 247 | 145 | 4 | 48 | 275 | 50 | 296 | 1.10e-42 | 157 |
MS.gene26050.t1 | MTR_6g051425 | 30.033 | 303 | 182 | 7 | 36 | 315 | 19 | 314 | 2.11e-40 | 152 |
MS.gene26050.t1 | MTR_1g086270 | 57.391 | 115 | 37 | 1 | 329 | 443 | 1 | 103 | 5.38e-38 | 137 |
MS.gene26050.t1 | MTR_8g446020 | 35.096 | 208 | 122 | 3 | 80 | 275 | 50 | 256 | 5.46e-37 | 139 |
MS.gene26050.t1 | MTR_6g090505 | 34.597 | 211 | 123 | 3 | 79 | 274 | 20 | 230 | 3.89e-35 | 137 |
MS.gene26050.t1 | MTR_1g050985 | 93.333 | 60 | 4 | 0 | 104 | 163 | 39 | 98 | 4.06e-33 | 123 |
MS.gene26050.t1 | MTR_1g070355 | 31.325 | 249 | 157 | 6 | 29 | 269 | 67 | 309 | 4.73e-30 | 126 |
MS.gene26050.t1 | MTR_0137s0040 | 56.731 | 104 | 43 | 1 | 1 | 102 | 1 | 104 | 6.80e-30 | 114 |
MS.gene26050.t1 | MTR_1g083640 | 28.947 | 228 | 143 | 4 | 38 | 246 | 55 | 282 | 2.26e-28 | 115 |
MS.gene26050.t1 | MTR_0291s0060 | 73.239 | 71 | 19 | 0 | 14 | 84 | 15 | 85 | 1.73e-27 | 107 |
MS.gene26050.t1 | MTR_7g074790 | 39.535 | 172 | 82 | 4 | 34 | 204 | 10 | 160 | 7.09e-25 | 104 |
MS.gene26050.t1 | MTR_7g446520 | 30.738 | 244 | 151 | 4 | 38 | 280 | 92 | 318 | 3.87e-24 | 104 |
MS.gene26050.t1 | MTR_4g035820 | 29.478 | 268 | 176 | 8 | 21 | 279 | 61 | 324 | 4.08e-24 | 108 |
MS.gene26050.t1 | MTR_5g039760 | 34.010 | 197 | 102 | 5 | 36 | 230 | 12 | 182 | 9.16e-23 | 97.1 |
MS.gene26050.t1 | MTR_7g446480 | 36.932 | 176 | 108 | 2 | 110 | 283 | 140 | 314 | 1.46e-22 | 99.8 |
MS.gene26050.t1 | MTR_5g076070 | 28.216 | 241 | 155 | 7 | 32 | 263 | 51 | 282 | 1.68e-22 | 99.0 |
MS.gene26050.t1 | MTR_7g446510 | 36.364 | 176 | 109 | 2 | 110 | 283 | 155 | 329 | 5.94e-22 | 98.2 |
MS.gene26050.t1 | MTR_0337s0040 | 30.058 | 173 | 108 | 3 | 80 | 240 | 51 | 222 | 4.11e-21 | 93.2 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 50 | 158 | 3.35e-19 | 87.8 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 50 | 158 | 3.36e-19 | 87.8 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 70 | 178 | 4.99e-19 | 87.8 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 70 | 178 | 5.28e-19 | 87.8 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 68 | 176 | 5.53e-19 | 87.8 |
MS.gene26050.t1 | MTR_4g067290 | 43.363 | 113 | 58 | 3 | 28 | 138 | 110 | 218 | 1.08e-18 | 87.8 |
MS.gene26050.t1 | MTR_4g102720 | 30.952 | 168 | 80 | 3 | 34 | 201 | 7 | 138 | 2.15e-18 | 85.1 |
MS.gene26050.t1 | MTR_1g008290 | 34.752 | 141 | 86 | 3 | 89 | 228 | 6 | 141 | 7.55e-18 | 81.3 |
MS.gene26050.t1 | MTR_2g098920 | 42.056 | 107 | 56 | 3 | 34 | 138 | 80 | 182 | 7.75e-18 | 84.7 |
MS.gene26050.t1 | MTR_7g061980 | 39.823 | 113 | 64 | 3 | 34 | 145 | 10 | 119 | 3.40e-17 | 78.6 |
MS.gene26050.t1 | MTR_1g019850 | 32.716 | 162 | 98 | 4 | 10 | 170 | 47 | 198 | 1.07e-15 | 77.8 |
MS.gene26050.t1 | MTR_3g006370 | 40.000 | 105 | 61 | 2 | 34 | 137 | 50 | 153 | 2.81e-15 | 76.3 |
MS.gene26050.t1 | MTR_2g014100 | 23.232 | 198 | 134 | 3 | 38 | 217 | 48 | 245 | 3.09e-15 | 76.6 |
MS.gene26050.t1 | MTR_5g045210 | 42.697 | 89 | 51 | 0 | 566 | 654 | 20 | 108 | 2.78e-14 | 72.8 |
MS.gene26050.t1 | MTR_0019s0290 | 28.169 | 142 | 90 | 2 | 83 | 213 | 19 | 159 | 8.89e-14 | 70.1 |
MS.gene26050.t1 | MTR_2g098880 | 35.000 | 120 | 75 | 2 | 34 | 151 | 73 | 191 | 1.06e-13 | 72.4 |
MS.gene26050.t1 | MTR_2g098880 | 35.000 | 120 | 75 | 2 | 34 | 151 | 61 | 179 | 1.18e-13 | 72.0 |
MS.gene26050.t1 | MTR_6g022070 | 26.627 | 169 | 119 | 1 | 329 | 497 | 1 | 164 | 1.20e-13 | 73.6 |
MS.gene26050.t1 | MTR_3g450850 | 24.016 | 254 | 171 | 7 | 37 | 274 | 50 | 297 | 2.24e-13 | 72.8 |
MS.gene26050.t1 | MTR_1g055240 | 28.000 | 150 | 96 | 2 | 83 | 221 | 4 | 152 | 3.55e-13 | 68.2 |
MS.gene26050.t1 | MTR_6g022080 | 25.949 | 158 | 114 | 2 | 40 | 195 | 91 | 247 | 3.89e-13 | 70.5 |
MS.gene26050.t1 | MTR_1g091013 | 58.929 | 56 | 23 | 0 | 47 | 102 | 14 | 69 | 4.13e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26050.t1 | AT4G38180 | 34.535 | 666 | 421 | 9 | 1 | 655 | 39 | 700 | 1.71e-124 | 391 |
MS.gene26050.t1 | AT4G15090 | 30.609 | 624 | 419 | 7 | 34 | 651 | 51 | 666 | 8.90e-99 | 324 |
MS.gene26050.t1 | AT4G15090 | 30.609 | 624 | 419 | 7 | 34 | 651 | 51 | 666 | 8.90e-99 | 324 |
MS.gene26050.t1 | AT4G15090 | 30.609 | 624 | 419 | 7 | 34 | 651 | 51 | 666 | 8.90e-99 | 324 |
MS.gene26050.t1 | AT4G15090 | 30.609 | 624 | 419 | 7 | 34 | 651 | 51 | 666 | 8.90e-99 | 324 |
MS.gene26050.t1 | AT4G15090 | 30.609 | 624 | 419 | 7 | 34 | 651 | 51 | 666 | 8.90e-99 | 324 |
MS.gene26050.t1 | AT1G76320 | 29.437 | 693 | 452 | 16 | 38 | 716 | 1 | 670 | 5.32e-94 | 307 |
MS.gene26050.t1 | AT1G76320 | 28.889 | 720 | 475 | 17 | 38 | 742 | 1 | 698 | 1.14e-93 | 308 |
MS.gene26050.t1 | AT1G76320 | 29.184 | 723 | 471 | 19 | 38 | 742 | 1 | 700 | 1.21e-93 | 308 |
MS.gene26050.t1 | AT1G76320 | 29.184 | 723 | 471 | 19 | 38 | 742 | 1 | 700 | 1.21e-93 | 308 |
MS.gene26050.t1 | AT3G22170 | 29.905 | 632 | 381 | 13 | 27 | 634 | 64 | 657 | 5.16e-89 | 298 |
MS.gene26050.t1 | AT3G22170 | 29.905 | 632 | 381 | 13 | 27 | 634 | 64 | 657 | 5.16e-89 | 298 |
MS.gene26050.t1 | AT2G27110 | 30.710 | 648 | 390 | 18 | 15 | 647 | 32 | 635 | 5.03e-86 | 290 |
MS.gene26050.t1 | AT2G27110 | 30.710 | 648 | 390 | 18 | 15 | 647 | 32 | 635 | 5.03e-86 | 290 |
MS.gene26050.t1 | AT1G10240 | 29.966 | 594 | 393 | 11 | 2 | 586 | 25 | 604 | 5.62e-77 | 262 |
MS.gene26050.t1 | AT1G10240 | 29.966 | 594 | 393 | 11 | 2 | 586 | 25 | 604 | 5.62e-77 | 262 |
MS.gene26050.t1 | AT3G06250 | 29.381 | 565 | 344 | 12 | 34 | 591 | 190 | 706 | 2.28e-76 | 262 |
MS.gene26050.t1 | AT3G06250 | 31.081 | 148 | 77 | 3 | 25 | 172 | 19 | 141 | 4.28e-12 | 70.5 |
MS.gene26050.t1 | AT3G06250 | 29.381 | 565 | 344 | 12 | 34 | 591 | 190 | 706 | 2.28e-76 | 262 |
MS.gene26050.t1 | AT3G06250 | 31.081 | 148 | 77 | 3 | 25 | 172 | 19 | 141 | 4.28e-12 | 70.5 |
MS.gene26050.t1 | AT3G06250 | 29.381 | 565 | 344 | 12 | 34 | 591 | 190 | 706 | 2.28e-76 | 262 |
MS.gene26050.t1 | AT3G06250 | 31.081 | 148 | 77 | 3 | 25 | 172 | 19 | 141 | 4.28e-12 | 70.5 |
MS.gene26050.t1 | AT5G18960 | 30.085 | 585 | 355 | 15 | 14 | 591 | 193 | 730 | 3.65e-74 | 257 |
MS.gene26050.t1 | AT5G18960 | 34.454 | 119 | 64 | 2 | 18 | 136 | 27 | 131 | 3.61e-14 | 77.0 |
MS.gene26050.t1 | AT5G18960 | 30.085 | 585 | 355 | 15 | 14 | 591 | 193 | 730 | 3.65e-74 | 257 |
MS.gene26050.t1 | AT5G18960 | 34.454 | 119 | 64 | 2 | 18 | 136 | 27 | 131 | 3.61e-14 | 77.0 |
MS.gene26050.t1 | AT2G27110 | 33.408 | 449 | 272 | 10 | 213 | 647 | 55 | 490 | 4.18e-73 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 1.21e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 2.25e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 2.25e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 2.55e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 2.55e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.235 | 648 | 418 | 14 | 37 | 676 | 41 | 636 | 2.55e-72 | 252 |
MS.gene26050.t1 | AT2G32250 | 26.121 | 647 | 418 | 14 | 38 | 676 | 1 | 595 | 9.92e-72 | 249 |
MS.gene26050.t1 | AT2G32250 | 26.121 | 647 | 418 | 14 | 38 | 676 | 1 | 595 | 1.12e-71 | 249 |
MS.gene26050.t1 | AT5G28530 | 26.421 | 598 | 407 | 13 | 34 | 609 | 55 | 641 | 7.00e-62 | 221 |
MS.gene26050.t1 | AT5G28530 | 26.863 | 577 | 385 | 13 | 34 | 588 | 55 | 616 | 8.91e-62 | 220 |
MS.gene26050.t1 | AT5G28530 | 26.863 | 577 | 385 | 13 | 34 | 588 | 55 | 616 | 8.91e-62 | 220 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 38 | 624 | 2.98e-61 | 221 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 24 | 610 | 3.83e-61 | 220 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 24 | 610 | 3.83e-61 | 220 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 24 | 610 | 4.08e-61 | 220 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 24 | 610 | 4.72e-61 | 220 |
MS.gene26050.t1 | AT4G19990 | 27.201 | 636 | 386 | 11 | 37 | 644 | 24 | 610 | 4.72e-61 | 220 |
MS.gene26050.t1 | AT4G38170 | 27.609 | 460 | 315 | 8 | 213 | 661 | 21 | 473 | 1.79e-60 | 214 |
MS.gene26050.t1 | AT1G52520 | 27.863 | 585 | 362 | 15 | 32 | 587 | 83 | 636 | 5.70e-59 | 213 |
MS.gene26050.t1 | AT1G80010 | 26.246 | 602 | 414 | 13 | 19 | 599 | 80 | 672 | 1.38e-53 | 198 |
MS.gene26050.t1 | AT4G19990 | 26.578 | 602 | 365 | 11 | 71 | 644 | 1 | 553 | 2.23e-52 | 194 |
MS.gene26050.t1 | AT5G28530 | 24.315 | 584 | 374 | 15 | 34 | 609 | 55 | 578 | 4.08e-42 | 163 |
MS.gene26050.t1 | AT5G28530 | 24.315 | 584 | 370 | 15 | 34 | 609 | 55 | 574 | 5.68e-42 | 162 |
MS.gene26050.t1 | AT3G59470 | 43.810 | 105 | 57 | 2 | 34 | 138 | 70 | 172 | 1.71e-19 | 89.4 |
MS.gene26050.t1 | AT3G59470 | 43.810 | 105 | 57 | 2 | 34 | 138 | 70 | 172 | 1.71e-19 | 89.4 |
MS.gene26050.t1 | AT3G59470 | 43.810 | 105 | 57 | 2 | 34 | 138 | 82 | 184 | 2.80e-19 | 89.0 |
MS.gene26050.t1 | AT3G07500 | 42.857 | 105 | 59 | 1 | 34 | 138 | 33 | 136 | 6.05e-17 | 80.9 |
MS.gene26050.t1 | AT2G43280 | 40.000 | 115 | 65 | 3 | 34 | 145 | 22 | 135 | 6.44e-16 | 77.8 |
MS.gene26050.t1 | AT4G12850 | 36.508 | 126 | 73 | 3 | 34 | 159 | 11 | 129 | 1.12e-15 | 75.1 |
MS.gene26050.t1 | AT4G12850 | 39.806 | 103 | 58 | 2 | 34 | 136 | 11 | 109 | 2.97e-14 | 70.9 |
MS.gene26050.t1 | AT4G12850 | 39.806 | 103 | 58 | 2 | 34 | 136 | 11 | 109 | 6.04e-14 | 71.2 |
MS.gene26050.t1 | AT2G43280 | 38.000 | 100 | 58 | 3 | 49 | 145 | 2 | 100 | 1.04e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTAATAACAAATATATTT+TGG | 0.090860 | 7.4:+54107546 | MS.gene26050:CDS |
TTCCAGATTCTGTCGATAAT+TGG | 0.153345 | 7.4:+54106856 | MS.gene26050:CDS |
GTTGAGTTCCATTGCTTAAT+TGG | 0.222933 | 7.4:-54109147 | None:intergenic |
TTTGAAGTCAGATTTAAATT+TGG | 0.265489 | 7.4:+54108165 | MS.gene26050:CDS |
CTTTAGTGATTGCTTCCTTT+TGG | 0.266356 | 7.4:-54107435 | None:intergenic |
TCCCAAGTGAGGTCCATTAT+TGG | 0.284927 | 7.4:-54106928 | None:intergenic |
TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 7.4:+54107014 | MS.gene26050:CDS |
GCACAGATGATTAATGATTA+TGG | 0.297180 | 7.4:+54107575 | MS.gene26050:CDS |
TCCTGTTCTTGTTTCTGCTC+TGG | 0.309098 | 7.4:-54107138 | None:intergenic |
AATGATTACAGTAAAAGAAT+TGG | 0.319753 | 7.4:+54106990 | MS.gene26050:CDS |
ATGAGATTCTGAAGCTCTAT+TGG | 0.322184 | 7.4:-54108710 | None:intergenic |
TACAGTAAAAGAATTGGATT+TGG | 0.322823 | 7.4:+54106996 | MS.gene26050:CDS |
TTCATCATTCGCAACTGATA+TGG | 0.322929 | 7.4:-54108842 | None:intergenic |
AAAGAAGGTATTGCCAATAA+TGG | 0.333359 | 7.4:+54106915 | MS.gene26050:CDS |
CATTTCATGGATTGTGCACT+TGG | 0.334162 | 7.4:+54107858 | MS.gene26050:CDS |
TAAGCAAATTCTTAAGGTCT+TGG | 0.340024 | 7.4:-54107409 | None:intergenic |
CTAAAAGACGTTATAAATCT+TGG | 0.340563 | 7.4:+54108932 | MS.gene26050:CDS |
CATTGTACCGCTTCATGAAA+TGG | 0.342244 | 7.4:-54108660 | None:intergenic |
CACCACTTACAAGACAAATA+AGG | 0.342570 | 7.4:+54107625 | MS.gene26050:CDS |
CGACCTTTGGGTGTATTTGT+TGG | 0.350273 | 7.4:+54107653 | MS.gene26050:CDS |
AATTCTTTACTCACTTCAAA+AGG | 0.359326 | 7.4:+54108191 | MS.gene26050:CDS |
ACCCAATTATCGACAGAATC+TGG | 0.360505 | 7.4:-54106858 | None:intergenic |
AAATAAGGATTATCGACCTT+TGG | 0.372421 | 7.4:+54107640 | MS.gene26050:CDS |
ATTGTCTTGGGAGATGAATC+AGG | 0.376608 | 7.4:+54107314 | MS.gene26050:CDS |
GGAAATAAAAGCAGAATAGA+TGG | 0.381196 | 7.4:+54107035 | MS.gene26050:CDS |
TCCAGATTCTGTCGATAATT+GGG | 0.390904 | 7.4:+54106857 | MS.gene26050:CDS |
TCGAAAGATAGGGAAATATA+AGG | 0.398025 | 7.4:+54107190 | MS.gene26050:CDS |
ATCTCACTTGATCGAAAGAT+AGG | 0.398426 | 7.4:+54107179 | MS.gene26050:CDS |
ATTCCACTTGATTCTCCATC+TGG | 0.404480 | 7.4:-54108808 | None:intergenic |
AGGAAGCAATCACTAAAGTA+TGG | 0.405760 | 7.4:+54107440 | MS.gene26050:CDS |
GCTGGACTCTTCATAAACTT+TGG | 0.408472 | 7.4:-54108752 | None:intergenic |
AATAAGGATTATCGACCTTT+GGG | 0.412280 | 7.4:+54107641 | MS.gene26050:CDS |
ATCCTTATTTGTCTTGTAAG+TGG | 0.412387 | 7.4:-54107627 | None:intergenic |
AAAGAGTTCGCAATTCCGTT+TGG | 0.414544 | 7.4:+54107925 | MS.gene26050:CDS |
AATTTAAATCTGACTTCAAA+TGG | 0.422915 | 7.4:-54108162 | None:intergenic |
TTGTTGGACTTAATAATCAT+AGG | 0.427337 | 7.4:+54107669 | MS.gene26050:CDS |
ATTAATGATTATGGATACTT+TGG | 0.430083 | 7.4:+54107584 | MS.gene26050:CDS |
TGGTTTAGAACAATCATTAC+CGG | 0.439840 | 7.4:+54109014 | MS.gene26050:CDS |
ATTTGGAGTGTAAACATTTG+CGG | 0.445050 | 7.4:-54108314 | None:intergenic |
ATTGTACCGCTTCATGAAAT+GGG | 0.445421 | 7.4:-54108659 | None:intergenic |
TCAAATAACCACTGAAAAGA+AGG | 0.449244 | 7.4:-54107737 | None:intergenic |
TGCCAATAATGGACCTCACT+TGG | 0.455018 | 7.4:+54106926 | MS.gene26050:CDS |
GCAAAGGAGAGGATGGTAAT+GGG | 0.456049 | 7.4:+54108433 | MS.gene26050:CDS |
GAAATTACAATGAGTTAACT+TGG | 0.462389 | 7.4:-54109201 | None:intergenic |
ATTCTTTACTCACTTCAAAA+GGG | 0.464370 | 7.4:+54108192 | MS.gene26050:CDS |
TGCAAAGGAGAGGATGGTAA+TGG | 0.465994 | 7.4:+54108432 | MS.gene26050:CDS |
TGCATCTTGATCTGTTAGAA+TGG | 0.469730 | 7.4:-54107798 | None:intergenic |
AGAATTTGCTTAAAACCAAA+AGG | 0.473219 | 7.4:+54107420 | MS.gene26050:CDS |
ATATCAAGATACTTGCATAA+AGG | 0.478662 | 7.4:+54108369 | MS.gene26050:CDS |
AATGGGCCTGGGCTTATGTT+CGG | 0.479427 | 7.4:+54108074 | MS.gene26050:CDS |
GACACCGTTGGCAAGGCAAA+AGG | 0.480180 | 7.4:+54108880 | MS.gene26050:CDS |
TGCATAAAGGAGGTGAAAGA+AGG | 0.483547 | 7.4:+54108382 | MS.gene26050:CDS |
GGAAATAATCAAGGTTGGAG+TGG | 0.484406 | 7.4:+54108610 | MS.gene26050:CDS |
ACAAGCATCACAAATTGTCT+TGG | 0.484770 | 7.4:+54107301 | MS.gene26050:CDS |
TTGAAAATCATAAAAGAATG+AGG | 0.485720 | 7.4:-54107510 | None:intergenic |
TTGTTTGAAATATGTCATCA+AGG | 0.487222 | 7.4:-54107474 | None:intergenic |
GATGGTAATGGGAAATCCTA+TGG | 0.488519 | 7.4:+54108444 | MS.gene26050:CDS |
AACAGGATGCACAGCGCGTA+TGG | 0.489143 | 7.4:+54107154 | MS.gene26050:CDS |
TCCAGAGCAGAAACAAGAAC+AGG | 0.490892 | 7.4:+54107137 | MS.gene26050:CDS |
GAAATAATCAAGGTTGGAGT+GGG | 0.495856 | 7.4:+54108611 | MS.gene26050:CDS |
AAAGGGCTGTCAATGCTAAA+CGG | 0.496120 | 7.4:+54108209 | MS.gene26050:CDS |
CAAGCATCACAAATTGTCTT+GGG | 0.505716 | 7.4:+54107302 | MS.gene26050:CDS |
TGGACAAGAGAGGCAAGGTT+GGG | 0.508068 | 7.4:+54108589 | MS.gene26050:CDS |
GCCTAAATTGAAAATGAAGA+AGG | 0.516431 | 7.4:+54108273 | MS.gene26050:CDS |
TGCATGCTTCAAAATCCAAA+CGG | 0.526707 | 7.4:-54107940 | None:intergenic |
ATGGACAAGAGAGGCAAGGT+TGG | 0.527313 | 7.4:+54108588 | MS.gene26050:CDS |
AACACTACATACTAAAACGA+TGG | 0.530470 | 7.4:+54108569 | MS.gene26050:CDS |
TCTGCTCTGGACTCCGCCGT+CGG | 0.532811 | 7.4:-54107125 | None:intergenic |
GCCAATAATGGACCTCACTT+GGG | 0.535942 | 7.4:+54106927 | MS.gene26050:CDS |
TGATAATGCAAAGGAGAGGA+TGG | 0.539415 | 7.4:+54108426 | MS.gene26050:CDS |
TCACTAAAGTATGGTGAAGT+GGG | 0.539453 | 7.4:+54107449 | MS.gene26050:CDS |
GTTCGGAATACATTCACTGC+AGG | 0.542220 | 7.4:+54108091 | MS.gene26050:CDS |
ATCACTAAAGTATGGTGAAG+TGG | 0.547859 | 7.4:+54107448 | MS.gene26050:CDS |
TTGTGTCGCTTGAATTGTGT+TGG | 0.553180 | 7.4:-54109119 | None:intergenic |
ATATATTGATGCAAATCTGT+TGG | 0.553833 | 7.4:-54107344 | None:intergenic |
CATACTCAGGTGGAATAAGA+AGG | 0.556614 | 7.4:-54107241 | None:intergenic |
TGAAAATCATAAAAGAATGA+GGG | 0.563844 | 7.4:-54107509 | None:intergenic |
GAAGTTTGAATCTGAGGCGG+CGG | 0.566137 | 7.4:+54106953 | MS.gene26050:CDS |
CAACAAAGACACCGTTGGCA+AGG | 0.566899 | 7.4:+54108873 | MS.gene26050:CDS |
GGGAATGAAGTTTGAATCTG+AGG | 0.567573 | 7.4:+54106947 | MS.gene26050:CDS |
GTGCCTCAGATATGTGTCGA+TGG | 0.570120 | 7.4:-54107280 | None:intergenic |
AACAGATCAAGATGCAGCAA+TGG | 0.573110 | 7.4:+54107805 | MS.gene26050:CDS |
GGTTGGGAAATAATCAAGGT+TGG | 0.576405 | 7.4:+54108605 | MS.gene26050:CDS |
TATATCTAAGCAAGCTGGTG+GGG | 0.581179 | 7.4:+54107364 | MS.gene26050:CDS |
ATAATCAAGGTTGGAGTGGG+AGG | 0.581542 | 7.4:+54108614 | MS.gene26050:CDS |
CGAATCATATGAACATACTC+AGG | 0.583230 | 7.4:-54107254 | None:intergenic |
TCTCACTTGATCGAAAGATA+GGG | 0.583267 | 7.4:+54107180 | MS.gene26050:CDS |
TATATATCTAAGCAAGCTGG+TGG | 0.584280 | 7.4:+54107362 | MS.gene26050:CDS |
CAATATATATCTAAGCAAGC+TGG | 0.586937 | 7.4:+54107359 | MS.gene26050:CDS |
GCAAGGTTGGGAAATAATCA+AGG | 0.588344 | 7.4:+54108601 | MS.gene26050:CDS |
TTGGTCAATTTAAGCAGCTG+AGG | 0.590840 | 7.4:-54108691 | None:intergenic |
AGATGGAGAATCAAGTGGAA+TGG | 0.591122 | 7.4:+54108810 | MS.gene26050:CDS |
ATATATCTAAGCAAGCTGGT+GGG | 0.601684 | 7.4:+54107363 | MS.gene26050:CDS |
TGCCTCAGATATGTGTCGAT+GGG | 0.604423 | 7.4:-54107279 | None:intergenic |
CACAAATTATGATAATGCAA+AGG | 0.613820 | 7.4:+54108417 | MS.gene26050:CDS |
TCAAACTTCATTCCCAAGTG+AGG | 0.614294 | 7.4:-54106939 | None:intergenic |
TGTATTCCGAACATAAGCCC+AGG | 0.617544 | 7.4:-54108080 | None:intergenic |
TATCCAGATGGAGAATCAAG+TGG | 0.620353 | 7.4:+54108805 | MS.gene26050:CDS |
TCAAGATACTTGCATAAAGG+AGG | 0.621392 | 7.4:+54108372 | MS.gene26050:CDS |
TGCTAAACGGAACATTGAGT+CGG | 0.622752 | 7.4:+54108222 | MS.gene26050:CDS |
GCTGGTGGGGTAGAGACTGT+CGG | 0.623303 | 7.4:+54107377 | MS.gene26050:CDS |
CAATCAAGCCAATTAAGCAA+TGG | 0.626444 | 7.4:+54109139 | MS.gene26050:CDS |
AACGATGGACAAGAGAGGCA+AGG | 0.631596 | 7.4:+54108584 | MS.gene26050:CDS |
AGTCCAACAAATACACCCAA+AGG | 0.632966 | 7.4:-54107656 | None:intergenic |
GACAACAACAAAGACACCGT+TGG | 0.638799 | 7.4:+54108868 | MS.gene26050:CDS |
AAGATTCACATGCTTCAAAG+AGG | 0.641966 | 7.4:+54107073 | MS.gene26050:CDS |
GGCAAAAGGCATAAAGACGA+AGG | 0.643397 | 7.4:+54108894 | MS.gene26050:CDS |
ATCATATGAACATACTCAGG+TGG | 0.645731 | 7.4:-54107251 | None:intergenic |
ATTATGATAATGCAAAGGAG+AGG | 0.652746 | 7.4:+54108422 | MS.gene26050:CDS |
AGATTCACATGCTTCAAAGA+GGG | 0.653445 | 7.4:+54107074 | MS.gene26050:CDS |
AATGAAGTTTGAATCTGAGG+CGG | 0.661995 | 7.4:+54106950 | MS.gene26050:CDS |
ATGCATAAATCTGCACGAGG+AGG | 0.667046 | 7.4:+54107958 | MS.gene26050:CDS |
TGACAAAAGACGTCAACCGA+CGG | 0.667263 | 7.4:+54107109 | MS.gene26050:CDS |
ACTAAAACGATGGACAAGAG+AGG | 0.677074 | 7.4:+54108579 | MS.gene26050:CDS |
CTCCCATCGACACATATCTG+AGG | 0.683683 | 7.4:+54107277 | MS.gene26050:CDS |
ACTCAGGTGGAATAAGAAGG+TGG | 0.694755 | 7.4:-54107238 | None:intergenic |
CAAAAGACGTCAACCGACGG+CGG | 0.706901 | 7.4:+54107112 | MS.gene26050:CDS |
AGCATGCATAAATCTGCACG+AGG | 0.723614 | 7.4:+54107955 | MS.gene26050:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAGTTAAATAAATGAT+AGG | - | chr7.4:54109080-54109099 | None:intergenic | 15.0% |
!!! | AGCTAATAACAAATATATTT+TGG | + | chr7.4:54107546-54107565 | MS.gene26050:CDS | 15.0% |
!!! | ATTCTTTTATGATTTTCAAA+TGG | + | chr7.4:54107514-54107533 | MS.gene26050:CDS | 15.0% |
!!! | GCTAATAACAAATATATTTT+GGG | + | chr7.4:54107547-54107566 | MS.gene26050:CDS | 15.0% |
!!! | TTTTAAATTGAAGGAAAAAT+GGG | + | chr7.4:54108057-54108076 | MS.gene26050:CDS | 15.0% |
!!! | TTTTTAAATTGAAGGAAAAA+TGG | + | chr7.4:54108056-54108075 | MS.gene26050:CDS | 15.0% |
!! | AAATTGAAAAAATCTCAAGA+TGG | + | chr7.4:54108994-54109013 | MS.gene26050:CDS | 20.0% |
!! | AATGATTACAGTAAAAGAAT+TGG | + | chr7.4:54106990-54107009 | MS.gene26050:CDS | 20.0% |
!! | AATTTAAATCTGACTTCAAA+TGG | - | chr7.4:54108165-54108184 | None:intergenic | 20.0% |
!! | ATTAATGATTATGGATACTT+TGG | + | chr7.4:54107584-54107603 | MS.gene26050:CDS | 20.0% |
!! | TGAAAATCATAAAAGAATGA+GGG | - | chr7.4:54107512-54107531 | None:intergenic | 20.0% |
!! | TGAAATTCCTCAAAAAAATT+TGG | - | chr7.4:54108334-54108353 | None:intergenic | 20.0% |
!! | TTGAAAATCATAAAAGAATG+AGG | - | chr7.4:54107513-54107532 | None:intergenic | 20.0% |
!!! | AAAGTGAATTTTTGAATGAA+TGG | + | chr7.4:54107981-54108000 | MS.gene26050:CDS | 20.0% |
!!! | AATAACAAATATATTTTGGG+CGG | + | chr7.4:54107550-54107569 | MS.gene26050:CDS | 20.0% |
!!! | ATAATGTTTTGAAAGATTCA+TGG | + | chr7.4:54108023-54108042 | MS.gene26050:CDS | 20.0% |
!!! | GCATACAATTTTTAAATTGA+AGG | + | chr7.4:54108048-54108067 | MS.gene26050:CDS | 20.0% |
!!! | TTTGAAGTCAGATTTAAATT+TGG | + | chr7.4:54108165-54108184 | MS.gene26050:CDS | 20.0% |
! | AATGTTCATCAAGAAAAAGA+AGG | + | chr7.4:54106900-54106919 | MS.gene26050:CDS | 25.0% |
! | AATTCTTTACTCACTTCAAA+AGG | + | chr7.4:54108191-54108210 | MS.gene26050:CDS | 25.0% |
! | ATATATTGATGCAAATCTGT+TGG | - | chr7.4:54107347-54107366 | None:intergenic | 25.0% |
! | ATATCAAGATACTTGCATAA+AGG | + | chr7.4:54108369-54108388 | MS.gene26050:CDS | 25.0% |
! | ATTCTTTACTCACTTCAAAA+GGG | + | chr7.4:54108192-54108211 | MS.gene26050:CDS | 25.0% |
! | CTAAAAGACGTTATAAATCT+TGG | + | chr7.4:54108932-54108951 | MS.gene26050:CDS | 25.0% |
! | GATAAAAGAAAAATACGTAC+CGG | - | chr7.4:54109036-54109055 | None:intergenic | 25.0% |
! | TACAGTAAAAGAATTGGATT+TGG | + | chr7.4:54106996-54107015 | MS.gene26050:CDS | 25.0% |
! | TATGGAAGAAAAAGTTTCTT+GGG | + | chr7.4:54108462-54108481 | MS.gene26050:CDS | 25.0% |
! | TTGTTGGACTTAATAATCAT+AGG | + | chr7.4:54107669-54107688 | MS.gene26050:CDS | 25.0% |
!! | AGAATTTGCTTAAAACCAAA+AGG | + | chr7.4:54107420-54107439 | MS.gene26050:CDS | 25.0% |
!! | CACAAATTATGATAATGCAA+AGG | + | chr7.4:54108417-54108436 | MS.gene26050:CDS | 25.0% |
!! | TTGTTTGAAATATGTCATCA+AGG | - | chr7.4:54107477-54107496 | None:intergenic | 25.0% |
!!! | ATAGGCAAACAATCATTTTT+GGG | + | chr7.4:54107687-54107706 | MS.gene26050:CDS | 25.0% |
!!! | TGGTTTTAAGCAAATTCTTA+AGG | - | chr7.4:54107418-54107437 | None:intergenic | 25.0% |
!!! | TTACACTCCAAATTTTTTTG+AGG | + | chr7.4:54108324-54108343 | MS.gene26050:CDS | 25.0% |
!!! | TTTTTTTGAGGAATTTCAAG+AGG | + | chr7.4:54108336-54108355 | MS.gene26050:CDS | 25.0% |
AAATAAGGATTATCGACCTT+TGG | + | chr7.4:54107640-54107659 | MS.gene26050:CDS | 30.0% | |
AACACTACATACTAAAACGA+TGG | + | chr7.4:54108569-54108588 | MS.gene26050:CDS | 30.0% | |
AATAAGGATTATCGACCTTT+GGG | + | chr7.4:54107641-54107660 | MS.gene26050:CDS | 30.0% | |
CAATATATATCTAAGCAAGC+TGG | + | chr7.4:54107359-54107378 | MS.gene26050:CDS | 30.0% | |
CTATGGAAGAAAAAGTTTCT+TGG | + | chr7.4:54108461-54108480 | MS.gene26050:CDS | 30.0% | |
GCACAGATGATTAATGATTA+TGG | + | chr7.4:54107575-54107594 | MS.gene26050:CDS | 30.0% | |
GCCTAAATTGAAAATGAAGA+AGG | + | chr7.4:54108273-54108292 | MS.gene26050:CDS | 30.0% | |
GCTTGAAAAAGATGCTAAAA+AGG | + | chr7.4:54108954-54108973 | MS.gene26050:CDS | 30.0% | |
GGAAATAAAAGCAGAATAGA+TGG | + | chr7.4:54107035-54107054 | MS.gene26050:CDS | 30.0% | |
GTTATGCCAAAAACATTTCA+TGG | + | chr7.4:54107845-54107864 | MS.gene26050:CDS | 30.0% | |
TAAGCAAATTCTTAAGGTCT+TGG | - | chr7.4:54107412-54107431 | None:intergenic | 30.0% | |
TCAAATAACCACTGAAAAGA+AGG | - | chr7.4:54107740-54107759 | None:intergenic | 30.0% | |
TCGAAAGATAGGGAAATATA+AGG | + | chr7.4:54107190-54107209 | MS.gene26050:CDS | 30.0% | |
TTGTCCAAAAAATATCCAGA+TGG | + | chr7.4:54108793-54108812 | MS.gene26050:CDS | 30.0% | |
! | AAACAATTCCTTCTTTTCAG+TGG | + | chr7.4:54107729-54107748 | MS.gene26050:CDS | 30.0% |
! | ATCCTTATTTGTCTTGTAAG+TGG | - | chr7.4:54107630-54107649 | None:intergenic | 30.0% |
! | ATTATGATAATGCAAAGGAG+AGG | + | chr7.4:54108422-54108441 | MS.gene26050:CDS | 30.0% |
! | ATTGCGAACTCTTTTGATAT+AGG | - | chr7.4:54107919-54107938 | None:intergenic | 30.0% |
! | ATTTGGAGTGTAAACATTTG+CGG | - | chr7.4:54108317-54108336 | None:intergenic | 30.0% |
! | CACAATCCATGAAATGTTTT+TGG | - | chr7.4:54107854-54107873 | None:intergenic | 30.0% |
! | CATAGGCAAACAATCATTTT+TGG | + | chr7.4:54107686-54107705 | MS.gene26050:CDS | 30.0% |
! | CATATCGTTAACTATTTTGC+TGG | - | chr7.4:54108773-54108792 | None:intergenic | 30.0% |
! | CTTGATGAACATTTTGTTCA+TGG | - | chr7.4:54106893-54106912 | None:intergenic | 30.0% |
! | GCCTTCTTCATTTTCAATTT+AGG | - | chr7.4:54108277-54108296 | None:intergenic | 30.0% |
! | TGATCTGTTAGAATGGTTTT+AGG | - | chr7.4:54107794-54107813 | None:intergenic | 30.0% |
! | TGGTTTAGAACAATCATTAC+CGG | + | chr7.4:54109014-54109033 | MS.gene26050:CDS | 30.0% |
!! | AAAGAAGGTATTGCCAATAA+TGG | + | chr7.4:54106915-54106934 | MS.gene26050:CDS | 30.0% |
!! | CAAGAAACTTTTTCTTCCAT+AGG | - | chr7.4:54108463-54108482 | None:intergenic | 30.0% |
!! | GAAACTTTTCTGAAAGCAAT+GGG | + | chr7.4:54107758-54107777 | MS.gene26050:CDS | 30.0% |
!! | TAGGCAAACAATCATTTTTG+GGG | + | chr7.4:54107688-54107707 | MS.gene26050:CDS | 30.0% |
!! | TCGTTTTAGTATGTAGTGTT+CGG | - | chr7.4:54108569-54108588 | None:intergenic | 30.0% |
!! | TGAAACTTTTCTGAAAGCAA+TGG | + | chr7.4:54107757-54107776 | MS.gene26050:CDS | 30.0% |
!!! | TTCTCCATCTGGATATTTTT+TGG | - | chr7.4:54108800-54108819 | None:intergenic | 30.0% |
AAAAAGCCCATTTCATGAAG+CGG | + | chr7.4:54108653-54108672 | MS.gene26050:CDS | 35.0% | |
AAGATTCACATGCTTCAAAG+AGG | + | chr7.4:54107073-54107092 | MS.gene26050:CDS | 35.0% | |
AATGAAGTTTGAATCTGAGG+CGG | + | chr7.4:54106950-54106969 | MS.gene26050:CDS | 35.0% | |
ACAAGCATCACAAATTGTCT+TGG | + | chr7.4:54107301-54107320 | MS.gene26050:CDS | 35.0% | |
AGATTCACATGCTTCAAAGA+GGG | + | chr7.4:54107074-54107093 | MS.gene26050:CDS | 35.0% | |
AGGAAGCAATCACTAAAGTA+TGG | + | chr7.4:54107440-54107459 | MS.gene26050:CDS | 35.0% | |
ATATATCTAAGCAAGCTGGT+GGG | + | chr7.4:54107363-54107382 | MS.gene26050:CDS | 35.0% | |
ATCACTAAAGTATGGTGAAG+TGG | + | chr7.4:54107448-54107467 | MS.gene26050:CDS | 35.0% | |
ATCATATGAACATACTCAGG+TGG | - | chr7.4:54107254-54107273 | None:intergenic | 35.0% | |
ATCTCACTTGATCGAAAGAT+AGG | + | chr7.4:54107179-54107198 | MS.gene26050:CDS | 35.0% | |
ATTGTACCGCTTCATGAAAT+GGG | - | chr7.4:54108662-54108681 | None:intergenic | 35.0% | |
CAAGCATCACAAATTGTCTT+GGG | + | chr7.4:54107302-54107321 | MS.gene26050:CDS | 35.0% | |
CAATCAAGCCAATTAAGCAA+TGG | + | chr7.4:54109139-54109158 | MS.gene26050:CDS | 35.0% | |
CACCACTTACAAGACAAATA+AGG | + | chr7.4:54107625-54107644 | MS.gene26050:CDS | 35.0% | |
CGAATCATATGAACATACTC+AGG | - | chr7.4:54107257-54107276 | None:intergenic | 35.0% | |
GAAATAATCAAGGTTGGAGT+GGG | + | chr7.4:54108611-54108630 | MS.gene26050:CDS | 35.0% | |
GTTGAGTTCCATTGCTTAAT+TGG | - | chr7.4:54109150-54109169 | None:intergenic | 35.0% | |
TATATATCTAAGCAAGCTGG+TGG | + | chr7.4:54107362-54107381 | MS.gene26050:CDS | 35.0% | |
TCAAGATACTTGCATAAAGG+AGG | + | chr7.4:54108372-54108391 | MS.gene26050:CDS | 35.0% | |
TCACTAAAGTATGGTGAAGT+GGG | + | chr7.4:54107449-54107468 | MS.gene26050:CDS | 35.0% | |
TCCAGATTCTGTCGATAATT+GGG | + | chr7.4:54106857-54106876 | MS.gene26050:CDS | 35.0% | |
TCTCACTTGATCGAAAGATA+GGG | + | chr7.4:54107180-54107199 | MS.gene26050:CDS | 35.0% | |
TGCATCTTGATCTGTTAGAA+TGG | - | chr7.4:54107801-54107820 | None:intergenic | 35.0% | |
TGCATGCTTCAAAATCCAAA+CGG | - | chr7.4:54107943-54107962 | None:intergenic | 35.0% | |
TTCATCATTCGCAACTGATA+TGG | - | chr7.4:54108845-54108864 | None:intergenic | 35.0% | |
TTCCAGATTCTGTCGATAAT+TGG | + | chr7.4:54106856-54106875 | MS.gene26050:CDS | 35.0% | |
TTTGGTATTCGTCGAGAATA+TGG | + | chr7.4:54107014-54107033 | MS.gene26050:CDS | 35.0% | |
! | CTTTAGTGATTGCTTCCTTT+TGG | - | chr7.4:54107438-54107457 | None:intergenic | 35.0% |
!! | ATGAGATTCTGAAGCTCTAT+TGG | - | chr7.4:54108713-54108732 | None:intergenic | 35.0% |
!! | CGTTTTAGTATGTAGTGTTC+GGG | - | chr7.4:54108568-54108587 | None:intergenic | 35.0% |
!!! | TAACGTCTTTTAGTCTTACG+TGG | - | chr7.4:54108925-54108944 | None:intergenic | 35.0% |
AAAGAGTTCGCAATTCCGTT+TGG | + | chr7.4:54107925-54107944 | MS.gene26050:CDS | 40.0% | |
AAAGGGCTGTCAATGCTAAA+CGG | + | chr7.4:54108209-54108228 | MS.gene26050:CDS | 40.0% | |
AACAGATCAAGATGCAGCAA+TGG | + | chr7.4:54107805-54107824 | MS.gene26050:CDS | 40.0% | |
AATTGAAGGAAAAATGGGCC+TGG | + | chr7.4:54108062-54108081 | MS.gene26050:CDS | 40.0% | |
ACCCAATTATCGACAGAATC+TGG | - | chr7.4:54106861-54106880 | None:intergenic | 40.0% | |
ACTAAAACGATGGACAAGAG+AGG | + | chr7.4:54108579-54108598 | MS.gene26050:CDS | 40.0% | |
AGATGGAGAATCAAGTGGAA+TGG | + | chr7.4:54108810-54108829 | MS.gene26050:CDS | 40.0% | |
AGTCCAACAAATACACCCAA+AGG | - | chr7.4:54107659-54107678 | None:intergenic | 40.0% | |
ATTCCACTTGATTCTCCATC+TGG | - | chr7.4:54108811-54108830 | None:intergenic | 40.0% | |
ATTGAAGGAAAAATGGGCCT+GGG | + | chr7.4:54108063-54108082 | MS.gene26050:CDS | 40.0% | |
ATTGTCTTGGGAGATGAATC+AGG | + | chr7.4:54107314-54107333 | MS.gene26050:CDS | 40.0% | |
CATACTCAGGTGGAATAAGA+AGG | - | chr7.4:54107244-54107263 | None:intergenic | 40.0% | |
CATTGTACCGCTTCATGAAA+TGG | - | chr7.4:54108663-54108682 | None:intergenic | 40.0% | |
GCAAGGTTGGGAAATAATCA+AGG | + | chr7.4:54108601-54108620 | MS.gene26050:CDS | 40.0% | |
GCTGGACTCTTCATAAACTT+TGG | - | chr7.4:54108755-54108774 | None:intergenic | 40.0% | |
GGAAATAATCAAGGTTGGAG+TGG | + | chr7.4:54108610-54108629 | MS.gene26050:CDS | 40.0% | |
GGGAATGAAGTTTGAATCTG+AGG | + | chr7.4:54106947-54106966 | MS.gene26050:CDS | 40.0% | |
GGTTGGGAAATAATCAAGGT+TGG | + | chr7.4:54108605-54108624 | MS.gene26050:CDS | 40.0% | |
TATATCTAAGCAAGCTGGTG+GGG | + | chr7.4:54107364-54107383 | MS.gene26050:CDS | 40.0% | |
TATCCAGATGGAGAATCAAG+TGG | + | chr7.4:54108805-54108824 | MS.gene26050:CDS | 40.0% | |
TCAAACTTCATTCCCAAGTG+AGG | - | chr7.4:54106942-54106961 | None:intergenic | 40.0% | |
TGCATAAAGGAGGTGAAAGA+AGG | + | chr7.4:54108382-54108401 | MS.gene26050:CDS | 40.0% | |
TGCTAAACGGAACATTGAGT+CGG | + | chr7.4:54108222-54108241 | MS.gene26050:CDS | 40.0% | |
TTGGTCAATTTAAGCAGCTG+AGG | - | chr7.4:54108694-54108713 | None:intergenic | 40.0% | |
! | CATTTCATGGATTGTGCACT+TGG | + | chr7.4:54107858-54107877 | MS.gene26050:CDS | 40.0% |
! | GCGAACTCTTTTGATATAGG+TGG | - | chr7.4:54107916-54107935 | None:intergenic | 40.0% |
! | TGATAATGCAAAGGAGAGGA+TGG | + | chr7.4:54108426-54108445 | MS.gene26050:CDS | 40.0% |
!! | ACTTTTCTGAAAGCAATGGG+TGG | + | chr7.4:54107761-54107780 | MS.gene26050:CDS | 40.0% |
!! | GATGGTAATGGGAAATCCTA+TGG | + | chr7.4:54108444-54108463 | MS.gene26050:CDS | 40.0% |
!! | GCTTCATGAAATGGGCTTTT+TGG | - | chr7.4:54108654-54108673 | None:intergenic | 40.0% |
!! | TTGTGTCGCTTGAATTGTGT+TGG | - | chr7.4:54109122-54109141 | None:intergenic | 40.0% |
!!! | TGTCGAACTTTTGAGACACA+TGG | + | chr7.4:54108487-54108506 | MS.gene26050:CDS | 40.0% |
ACTCAGGTGGAATAAGAAGG+TGG | - | chr7.4:54107241-54107260 | None:intergenic | 45.0% | |
AGCATGCATAAATCTGCACG+AGG | + | chr7.4:54107955-54107974 | MS.gene26050:CDS | 45.0% | |
ATAATCAAGGTTGGAGTGGG+AGG | + | chr7.4:54108614-54108633 | MS.gene26050:CDS | 45.0% | |
ATGCATAAATCTGCACGAGG+AGG | + | chr7.4:54107958-54107977 | MS.gene26050:CDS | 45.0% | |
CGACCTTTGGGTGTATTTGT+TGG | + | chr7.4:54107653-54107672 | MS.gene26050:CDS | 45.0% | |
GACAACAACAAAGACACCGT+TGG | + | chr7.4:54108868-54108887 | MS.gene26050:CDS | 45.0% | |
GCAAAGGAGAGGATGGTAAT+GGG | + | chr7.4:54108433-54108452 | MS.gene26050:CDS | 45.0% | |
GTTCGGAATACATTCACTGC+AGG | + | chr7.4:54108091-54108110 | MS.gene26050:CDS | 45.0% | |
TCCAGAGCAGAAACAAGAAC+AGG | + | chr7.4:54107137-54107156 | MS.gene26050:CDS | 45.0% | |
TCCCAAGTGAGGTCCATTAT+TGG | - | chr7.4:54106931-54106950 | None:intergenic | 45.0% | |
TGACAAAAGACGTCAACCGA+CGG | + | chr7.4:54107109-54107128 | MS.gene26050:CDS | 45.0% | |
TGCAAAGGAGAGGATGGTAA+TGG | + | chr7.4:54108432-54108451 | MS.gene26050:CDS | 45.0% | |
TGTATTCCGAACATAAGCCC+AGG | - | chr7.4:54108083-54108102 | None:intergenic | 45.0% | |
! | GGCAAAAGGCATAAAGACGA+AGG | + | chr7.4:54108894-54108913 | MS.gene26050:CDS | 45.0% |
! | TATGCCTTTTGCCTTGCCAA+CGG | - | chr7.4:54108887-54108906 | None:intergenic | 45.0% |
! | TGCCTCAGATATGTGTCGAT+GGG | - | chr7.4:54107282-54107301 | None:intergenic | 45.0% |
!! | GCCAATAATGGACCTCACTT+GGG | + | chr7.4:54106927-54106946 | MS.gene26050:CDS | 45.0% |
!! | TCCTGTTCTTGTTTCTGCTC+TGG | - | chr7.4:54107141-54107160 | None:intergenic | 45.0% |
!! | TGCCAATAATGGACCTCACT+TGG | + | chr7.4:54106926-54106945 | MS.gene26050:CDS | 45.0% |
AACGATGGACAAGAGAGGCA+AGG | + | chr7.4:54108584-54108603 | MS.gene26050:CDS | 50.0% | |
AATGGGCCTGGGCTTATGTT+CGG | + | chr7.4:54108074-54108093 | MS.gene26050:CDS | 50.0% | |
ATGGACAAGAGAGGCAAGGT+TGG | + | chr7.4:54108588-54108607 | MS.gene26050:CDS | 50.0% | |
CAACAAAGACACCGTTGGCA+AGG | + | chr7.4:54108873-54108892 | MS.gene26050:CDS | 50.0% | |
CTCCCATCGACACATATCTG+AGG | + | chr7.4:54107277-54107296 | MS.gene26050:CDS | 50.0% | |
GTGCCTCAGATATGTGTCGA+TGG | - | chr7.4:54107283-54107302 | None:intergenic | 50.0% | |
TGGACAAGAGAGGCAAGGTT+GGG | + | chr7.4:54108589-54108608 | MS.gene26050:CDS | 50.0% | |
! | GAAGTTTGAATCTGAGGCGG+CGG | + | chr7.4:54106953-54106972 | MS.gene26050:CDS | 50.0% |
AACAGGATGCACAGCGCGTA+TGG | + | chr7.4:54107154-54107173 | MS.gene26050:CDS | 55.0% | |
CAAAAGACGTCAACCGACGG+CGG | + | chr7.4:54107112-54107131 | MS.gene26050:CDS | 55.0% | |
GACACCGTTGGCAAGGCAAA+AGG | + | chr7.4:54108880-54108899 | MS.gene26050:CDS | 55.0% | |
GCTGGTGGGGTAGAGACTGT+CGG | + | chr7.4:54107377-54107396 | MS.gene26050:CDS | 60.0% | |
! | TCTGCTCTGGACTCCGCCGT+CGG | - | chr7.4:54107128-54107147 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 54106840 | 54109219 | 54106840 | ID=MS.gene26050 |
chr7.4 | mRNA | 54106840 | 54109219 | 54106840 | ID=MS.gene26050.t1;Parent=MS.gene26050 |
chr7.4 | exon | 54106840 | 54109035 | 54106840 | ID=MS.gene26050.t1.exon1;Parent=MS.gene26050.t1 |
chr7.4 | CDS | 54106840 | 54109035 | 54106840 | ID=cds.MS.gene26050.t1;Parent=MS.gene26050.t1 |
chr7.4 | exon | 54109112 | 54109219 | 54109112 | ID=MS.gene26050.t1.exon2;Parent=MS.gene26050.t1 |
chr7.4 | CDS | 54109112 | 54109219 | 54109112 | ID=cds.MS.gene26050.t1;Parent=MS.gene26050.t1 |
Gene Sequence |
Protein sequence |