AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26097

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26097.t1 MTR_5g065200 75.995 854 152 8 22 860 19 834 0.0 1274
MS.gene26097.t1 MTR_1g114150 72.751 767 175 8 103 860 309 1050 0.0 1151
MS.gene26097.t1 MTR_1g114130 72.244 753 191 6 113 862 303 1040 0.0 1123
MS.gene26097.t1 MTR_1g069565 63.204 905 262 12 3 860 1 881 0.0 1077
MS.gene26097.t1 MTR_1g114070 67.833 743 209 5 121 860 209 924 0.0 1032
MS.gene26097.t1 MTR_1g069565 58.628 962 270 15 3 860 1 938 0.0 1023
MS.gene26097.t1 MTR_1g114150 69.970 656 163 8 103 749 309 939 0.0 941
MS.gene26097.t1 MTR_5g047620 66.168 668 197 11 207 860 145 797 0.0 872
MS.gene26097.t1 MTR_0020s0100 61.598 651 198 11 203 843 83 691 0.0 771
MS.gene26097.t1 MTR_7g117445 43.831 851 374 16 94 859 94 925 0.0 666
MS.gene26097.t1 MTR_7g117445 43.831 851 374 16 94 859 94 925 0.0 665
MS.gene26097.t1 MTR_7g117445 43.831 851 374 16 94 859 94 925 0.0 665
MS.gene26097.t1 MTR_4g132540 44.673 779 348 16 109 861 146 867 0.0 625
MS.gene26097.t1 MTR_2g024270 46.594 734 324 13 129 858 148 817 0.0 603
MS.gene26097.t1 MTR_7g117445 42.351 791 352 16 94 799 94 865 0.0 588
MS.gene26097.t1 MTR_2g024140 45.245 736 321 14 128 858 27 685 0.0 583
MS.gene26097.t1 MTR_1g083120 36.510 745 409 14 135 862 198 895 8.31e-152 470
MS.gene26097.t1 MTR_1g083120 36.510 745 409 14 135 862 215 912 1.31e-151 470
MS.gene26097.t1 MTR_1g083120 36.111 684 373 14 135 801 198 834 2.48e-133 419
MS.gene26097.t1 MTR_1g083120 36.111 684 373 14 135 801 198 834 2.81e-133 419
MS.gene26097.t1 MTR_2g011630 34.545 770 434 19 135 857 207 953 7.21e-130 413
MS.gene26097.t1 MTR_1g008060 43.203 537 267 11 129 661 864 1366 8.95e-126 416
MS.gene26097.t1 MTR_1g008060 72.794 136 37 0 714 849 1551 1686 4.82e-58 217
MS.gene26097.t1 MTR_1g008060 43.203 537 267 11 129 661 855 1357 1.17e-125 415
MS.gene26097.t1 MTR_1g008060 72.794 136 37 0 714 849 1542 1677 4.93e-58 217
MS.gene26097.t1 MTR_2g011630 34.897 682 384 16 219 857 45 709 5.55e-116 370
MS.gene26097.t1 MTR_2g011630 34.897 682 384 16 219 857 77 741 9.05e-116 370
MS.gene26097.t1 MTR_8g062940 51.381 362 143 4 135 496 33 361 6.78e-114 352
MS.gene26097.t1 MTR_2g024240 53.698 311 108 3 513 823 114 388 1.04e-104 329
MS.gene26097.t1 MTR_4g091520 35.943 562 287 15 359 857 727 1278 1.32e-93 321
MS.gene26097.t1 MTR_4g091520 36.310 168 100 3 135 297 260 425 1.64e-25 114
MS.gene26097.t1 MTR_0295s0020 57.609 184 71 1 486 669 1 177 4.93e-61 205
MS.gene26097.t1 MTR_4g091520 32.421 475 251 14 359 773 657 1121 8.81e-59 218
MS.gene26097.t1 MTR_4g091520 36.310 168 100 3 135 297 260 425 1.38e-25 114
MS.gene26097.t1 MTR_4g091520 32.421 475 251 14 359 773 692 1156 1.14e-58 218
MS.gene26097.t1 MTR_4g091520 36.310 168 100 3 135 297 260 425 1.31e-25 114
MS.gene26097.t1 MTR_4g091520 32.421 475 251 14 359 773 727 1191 1.23e-58 218
MS.gene26097.t1 MTR_4g091520 36.310 168 100 3 135 297 260 425 1.42e-25 114
MS.gene26097.t1 MTR_8g465700 51.795 195 87 2 448 642 4 191 5.15e-58 200
MS.gene26097.t1 MTR_8g013920 60.256 156 43 3 538 693 40 176 2.19e-42 153
MS.gene26097.t1 MTR_8g465720 73.864 88 22 1 714 801 53 139 3.01e-40 146
MS.gene26097.t1 MTR_3g080750 57.377 61 20 1 624 678 85 145 5.00e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26097.t1 AT3G07610 45.925 773 333 9 134 857 154 890 0.0 676
MS.gene26097.t1 AT1G11950 47.483 735 332 9 131 862 189 872 0.0 670
MS.gene26097.t1 AT1G11950 47.483 735 332 9 131 862 189 872 0.0 670
MS.gene26097.t1 AT3G07610 44.697 792 337 10 134 857 154 912 0.0 655
MS.gene26097.t1 AT1G62310 46.332 736 344 12 115 842 186 878 0.0 652
MS.gene26097.t1 AT4G00990 42.401 783 365 17 135 861 80 832 0.0 587
MS.gene26097.t1 AT1G11950 45.331 664 309 9 131 791 189 801 0.0 566
MS.gene26097.t1 AT4G00990 41.289 729 342 17 135 807 80 778 2.99e-173 521
MS.gene26097.t1 AT4G00990 41.609 721 335 17 135 799 80 770 3.02e-172 518
MS.gene26097.t1 AT3G07610 43.327 547 251 7 134 631 154 690 4.92e-142 439
MS.gene26097.t1 AT1G09060 31.656 755 439 17 128 862 197 894 9.71e-116 375
MS.gene26097.t1 AT1G09060 31.656 755 439 17 128 862 197 894 9.71e-116 375
MS.gene26097.t1 AT1G09060 31.656 755 439 17 128 862 211 908 1.17e-115 375
MS.gene26097.t1 AT1G09060 31.656 755 439 17 128 862 211 908 1.17e-115 375
MS.gene26097.t1 AT4G21430 29.799 745 453 14 129 857 221 911 2.26e-94 317

Find 192 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATTTATTCTTAGATTT+TGG 0.128373 5.4:-56506430 None:intergenic
AGTGCTCTCTGAAGCATTTA+TGG 0.163893 5.4:-56508104 None:intergenic
GGATTTGTATATTCTTTAAA+TGG 0.213495 5.4:-56507305 None:intergenic
TCATATTGCTAAAGCAAAAT+TGG 0.216686 5.4:+56507973 MS.gene26097:CDS
CGTTGGTGGTTCTACGTTCT+TGG 0.237603 5.4:-56504994 None:intergenic
GATCTTCATCACGAGGATTT+AGG 0.246459 5.4:+56506688 MS.gene26097:CDS
CTTCGTTGTGGCCAACTTCT+AGG 0.252701 5.4:+56506235 MS.gene26097:CDS
AGTACATTGCTGACAATTAC+AGG 0.278275 5.4:-56506742 None:intergenic
TGTCATTTCTTTGACATTGA+TGG 0.280482 5.4:-56505346 None:intergenic
TGTCTTGCTTAAGGTGCCTT+TGG 0.287167 5.4:-56508030 None:intergenic
ACTAAGTCAGAGATGTAATT+TGG 0.287365 5.4:-56506487 None:intergenic
GACCAAGCACAAGCCACTTT+TGG 0.295143 5.4:+56506831 MS.gene26097:CDS
GATGATGATGGCCAATCTTC+TGG 0.296228 5.4:+56508127 MS.gene26097:CDS
CAGCTCTTTGCGTAGATTCC+AGG 0.304385 5.4:+56506635 MS.gene26097:CDS
TACCTCCAATTTGTCCTCTA+TGG 0.305460 5.4:-56511078 None:intergenic
TCTGGCTTTAGAACATTATC+AGG 0.310569 5.4:-56507362 None:intergenic
AGTACGCGCGCTCATCATTA+TGG 0.311143 5.4:-56506033 None:intergenic
GCTCTTGTTTGAAGCCTGTT+AGG 0.324611 5.4:+56506578 MS.gene26097:CDS
GTCTTGCTTAAGGTGCCTTT+GGG 0.327340 5.4:-56508029 None:intergenic
TCTATGGACCTGTGATTTAC+TGG 0.329135 5.4:-56511062 None:intergenic
GCTCCCTCTTGTCTTGCTTA+AGG 0.329503 5.4:-56508039 None:intergenic
ATTCTTTAGATGGTGCTCTC+TGG 0.331445 5.4:+56508212 MS.gene26097:CDS
AGCATGAGGTGCTTTGTATC+TGG 0.334250 5.4:-56506335 None:intergenic
AATGTGCACCAATTCTTTAC+CGG 0.348314 5.4:+56507158 MS.gene26097:CDS
CAAGAAAATGGTTTGTTGGT+TGG 0.352054 5.4:+56508187 MS.gene26097:CDS
CAACAAAATTCGTCGTAATA+AGG 0.352226 5.4:+56505202 MS.gene26097:CDS
CGTCCATTGCTCTCCTTTAG+AGG 0.359183 5.4:+56508306 MS.gene26097:CDS
CTTTCCTCAAATAAATTAGA+AGG 0.368022 5.4:-56507245 None:intergenic
ATGCCGGACGGTTAGATAAA+AGG 0.368269 5.4:-56509573 None:intergenic
GCGACGATGAAACAAGAAAA+TGG 0.376184 5.4:+56508175 MS.gene26097:CDS
CCTCCTCCGCCGCGTTTGTT+CGG 0.377876 5.4:-56504965 None:intergenic
TTGGTTGGAGATTCTTTAGA+TGG 0.389380 5.4:+56508202 MS.gene26097:CDS
AGAAGCATTTCAGAGAGTTC+AGG 0.389778 5.4:+56508281 MS.gene26097:CDS
ATACGTACATGGTCAAAATC+TGG 0.391419 5.4:+56506373 MS.gene26097:CDS
AGAGGACGTACCCGCATTGC+AGG 0.392255 5.4:+56508249 MS.gene26097:CDS
ATTTATGGAAGAAGACAAAT+TGG 0.392384 5.4:-56508089 None:intergenic
AAGATAAACTCAAAATCAAA+TGG 0.394363 5.4:-56506268 None:intergenic
GCCTCCTTCTAATTTATTTG+AGG 0.400880 5.4:+56507241 MS.gene26097:CDS
ATGTCATCTCTGTTCCTAAC+AGG 0.405147 5.4:-56506592 None:intergenic
AGGCCAATCCTGTTTATCCT+TGG 0.405342 5.4:-56507195 None:intergenic
TTTGACCATGTACGTATCTC+AGG 0.415385 5.4:-56506367 None:intergenic
TCTACCACATTTAATACGAT+TGG 0.415607 5.4:+56505775 MS.gene26097:CDS
GGCCAATCCTGTTTATCCTT+GGG 0.421151 5.4:-56507194 None:intergenic
GGAGCTACATGGTGATAATC+AGG 0.421783 5.4:+56508057 MS.gene26097:CDS
AATGTACTTGAATGTACATC+TGG 0.421952 5.4:+56506757 MS.gene26097:CDS
ATATAAAATACCTTGTATCT+TGG 0.422375 5.4:-56505831 None:intergenic
CGCTAAACGCAACCGTAAAA+CGG 0.424425 5.4:+56505019 MS.gene26097:CDS
TTCCACCATGCAGATAATCT+TGG 0.430174 5.4:-56506297 None:intergenic
GAGTATTGAAATTGAAAGAT+TGG 0.430433 5.4:+56507219 MS.gene26097:CDS
CCTTCAAATTTCTGACTTGG+TGG 0.430574 5.4:-56509786 None:intergenic
TTGTGTACCCGGTAAAGAAT+TGG 0.436382 5.4:-56507166 None:intergenic
TTCAGATATTCCTGCAATGC+GGG 0.438768 5.4:-56508259 None:intergenic
GAAAATGATTATATACACTA+TGG 0.439229 5.4:+56511682 MS.gene26097:CDS
AAATTGTCCCAAGGATAAAC+AGG 0.439965 5.4:+56507187 MS.gene26097:CDS
TTCTTTAGATGGTGCTCTCT+GGG 0.441915 5.4:+56508213 MS.gene26097:CDS
AAGAGCTTTGAGCATATACT+TGG 0.442351 5.4:-56505753 None:intergenic
GAAATATGCTTCTCAGTTCA+AGG 0.451338 5.4:-56506462 None:intergenic
AATGTACATCTGGTTTAAGC+TGG 0.451500 5.4:+56506767 MS.gene26097:CDS
TTCAAATTTCTGACTTGGTG+GGG 0.453619 5.4:-56509784 None:intergenic
CTTCAAATTTCTGACTTGGT+GGG 0.454550 5.4:-56509785 None:intergenic
AACAAAATCAAGTGCAACCT+TGG 0.456526 5.4:-56510985 None:intergenic
CCACCAAGTCAGAAATTTGA+AGG 0.456844 5.4:+56509786 MS.gene26097:CDS
AGGCACTTGAATGCTTAGAT+TGG 0.460466 5.4:+56506860 MS.gene26097:CDS
CAGGTCCATAGAGGACAAAT+TGG 0.466017 5.4:+56511073 MS.gene26097:CDS
GAAACAAGAAAATGGTTTGT+TGG 0.467660 5.4:+56508183 MS.gene26097:CDS
AATTCAGAAATGGCGTTGGC+GGG 0.468398 5.4:+56504837 None:intergenic
ATAATGATGAGCGCGCGTAC+TGG 0.472042 5.4:+56506035 MS.gene26097:CDS
TCTTTCTAGAATAGCGATGT+AGG 0.474365 5.4:-56504938 None:intergenic
CCGAACAAACGCGGCGGAGG+AGG 0.477849 5.4:+56504965 MS.gene26097:CDS
TCTAAGAATAAATGTGATCA+TGG 0.477946 5.4:+56506436 MS.gene26097:CDS
TGTATATTCTTTAAATGGCA+AGG 0.481787 5.4:-56507300 None:intergenic
TGACCTCTGAGCCAGAAGAT+TGG 0.482683 5.4:-56508138 None:intergenic
ACGCCGAACAAACGCGGCGG+AGG 0.483322 5.4:+56504962 MS.gene26097:CDS
AAAAGAACTTGCAGATTCAA+TGG 0.485093 5.4:+56506519 MS.gene26097:CDS
TGCGGAATTCCTCTGTCAAA+CGG 0.487229 5.4:-56511034 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.491065 5.4:-56511052 None:intergenic
ATCTTCTGGCTCAGAGGTCA+AGG 0.494381 5.4:+56508141 MS.gene26097:CDS
TTCAATGGCACTGGAGCAGA+GGG 0.494515 5.4:+56506716 MS.gene26097:CDS
CGATACCAACGATGATCATC+AGG 0.495954 5.4:+56505721 MS.gene26097:CDS
TTACCTTCAAATTTCTGACT+TGG 0.497862 5.4:-56509789 None:intergenic
GAATTCAGAAATGGCGTTGG+CGG 0.503051 5.4:+56504836 None:intergenic
GTGTATGCTGTATTAACAAA+TGG 0.503342 5.4:+56505414 MS.gene26097:CDS
TCAAATTTCTGACTTGGTGG+GGG 0.505542 5.4:-56509783 None:intergenic
GTCAAAGAAATGACAAAGGA+AGG 0.505650 5.4:+56505354 MS.gene26097:CDS
ATCCAAAAGTGGCTTGTGCT+TGG 0.509797 5.4:-56506833 None:intergenic
AGCTCTTTGCGTAGATTCCA+GGG 0.513640 5.4:+56506636 MS.gene26097:CDS
GCAAAGGGTGTTTGAGATCA+CGG 0.514544 5.4:+56505576 MS.gene26097:CDS
CATGCAGATAATCTTGGCCT+CGG 0.514765 5.4:-56506291 None:intergenic
AGATAAACTCAAAATCAAAT+GGG 0.515679 5.4:-56506267 None:intergenic
CCATGTACGTATCTCAGGTT+CGG 0.523324 5.4:-56506362 None:intergenic
TGTATGTAGGAATTGAGCCT+TGG 0.523387 5.4:+56509713 MS.gene26097:intron
TTGCGTTTAGCGTTCGTTGG+TGG 0.527023 5.4:-56505008 None:intergenic
CGCAACCGTAAAACGGAAGA+AGG 0.528137 5.4:+56505026 MS.gene26097:CDS
CGGTTGCGTTTAGCGTTCGT+TGG 0.531713 5.4:-56505011 None:intergenic
CTAGAATAGCGATGTAGGAT+AGG 0.533251 5.4:-56504933 None:intergenic
CTTGGGACAATTTGTGTACC+CGG 0.535581 5.4:-56507177 None:intergenic
ACTAACTTTACCTCCTCTAA+AGG 0.536444 5.4:-56508319 None:intergenic
TTAGATAAAAGGTCTGATCA+TGG 0.536799 5.4:-56509562 None:intergenic
ATGTGCACCAATTCTTTACC+GGG 0.551064 5.4:+56507159 MS.gene26097:CDS
TGATGAAGATCTACTGCCCT+AGG 0.552902 5.4:-56506676 None:intergenic
TAAAAGGTCTGATCATGGAT+GGG 0.555220 5.4:-56509557 None:intergenic
AGACATATCACAATGGAGCT+TGG 0.555405 5.4:-56507450 None:intergenic
TTGCAATTACCACAACATAC+AGG 0.555718 5.4:-56505551 None:intergenic
GGTCTGCACCACCTAGAAGT+TGG 0.555830 5.4:-56506246 None:intergenic
ATAAAAGGTCTGATCATGGA+TGG 0.557609 5.4:-56509558 None:intergenic
AGTGCCTTAACATCCAAAAG+TGG 0.562439 5.4:-56506844 None:intergenic
TCTTTCAATTTCAATACTCG+AGG 0.562439 5.4:-56507215 None:intergenic
AGGTTGAGAGCACCTTTGAA+AGG 0.563537 5.4:-56507326 None:intergenic
TACGTACATGGTCAAAATCT+GGG 0.563636 5.4:+56506374 MS.gene26097:CDS
GTGGTAATTGCAATTGCAAA+GGG 0.564159 5.4:+56505561 MS.gene26097:CDS
TGGTCTCTCAGTCGCAGCCA+CGG 0.564180 5.4:-56504910 None:intergenic
GTCCCAAGGATAAACAGGAT+TGG 0.567361 5.4:+56507192 MS.gene26097:CDS
GAATATACAAATCCTTTCAA+AGG 0.567529 5.4:+56507314 MS.gene26097:CDS
AACGAAGCTCGCGGCAACAG+AGG 0.568999 5.4:-56506219 None:intergenic
AGATTATCTGCATGGTGGAA+AGG 0.569015 5.4:+56506300 MS.gene26097:CDS
TTAATTGCATCAATACTCGC+AGG 0.570155 5.4:-56507998 None:intergenic
ATGTACATCTGGTTTAAGCT+GGG 0.572127 5.4:+56506768 MS.gene26097:CDS
CAACGATGATCATCAGGTTG+AGG 0.572610 5.4:+56505727 MS.gene26097:CDS
ATTTGATCTTCTTCCAAGTG+AGG 0.572865 5.4:-56505515 None:intergenic
ATGACATACACAATAACTCA+AGG 0.573104 5.4:+56506608 MS.gene26097:CDS
TTTCAATGGCACTGGAGCAG+AGG 0.573700 5.4:+56506715 MS.gene26097:CDS
TTTGAATTCAGAAATGGCGT+TGG 0.581594 5.4:+56504833 None:intergenic
GTTGTTAAGGTATCCTCACT+TGG 0.581865 5.4:+56505502 MS.gene26097:intron
GCTGGGAGCCGCTTGTCATG+TGG 0.582104 5.4:+56506785 MS.gene26097:CDS
TCAACAACAAATGTTTGAGA+AGG 0.585736 5.4:+56505799 MS.gene26097:CDS
GATATAGAAGCCAAGATACA+AGG 0.586057 5.4:+56505821 MS.gene26097:CDS
GTCCATAGAGGACAAATTGG+AGG 0.587047 5.4:+56511076 MS.gene26097:CDS
CAAAACATTAGAGAAAGCAT+TGG 0.588335 5.4:+56511715 MS.gene26097:CDS
CTCAACCTGATGATCATCGT+TGG 0.588540 5.4:-56505726 None:intergenic
AGTAAATCACAGGTCCATAG+AGG 0.591019 5.4:+56511064 MS.gene26097:CDS
AGCTTCTGAACAAAAGTCCA+AGG 0.591626 5.4:-56509730 None:intergenic
CGAGGCCAAGATTATCTGCA+TGG 0.592075 5.4:+56506292 MS.gene26097:CDS
TATCAGGCAGCTTCACAGCA+AGG 0.593858 5.4:-56507346 None:intergenic
CAAGACAAGAGGGAGCTACA+TGG 0.594046 5.4:+56508046 MS.gene26097:CDS
ACGACGGCGTCATCGTTGAA+CGG 0.597980 5.4:+56504876 MS.gene26097:CDS
GCAAACTTCCAGTAAATCAC+AGG 0.600882 5.4:+56511054 MS.gene26097:CDS
TGATCCAATCGTATTAAATG+TGG 0.601526 5.4:-56505779 None:intergenic
AAAAGGTCTGATCATGGATG+GGG 0.603357 5.4:-56509556 None:intergenic
GCACCTTAAGCAAGACAAGA+GGG 0.606408 5.4:+56508036 MS.gene26097:CDS
TCCTCAAATAAATTAGAAGG+AGG 0.607054 5.4:-56507242 None:intergenic
TCTGCATGGTGGAAAGGCGG+AGG 0.608026 5.4:+56506306 MS.gene26097:CDS
GAAGATCTACTGCCCTAGGA+TGG 0.610352 5.4:-56506672 None:intergenic
TAATGTTCTAAAGCCAGACA+TGG 0.612070 5.4:+56507367 MS.gene26097:CDS
TCGAACAGAAACAGCAGCAA+CGG 0.613514 5.4:-56505063 None:intergenic
TCAGAGAGCACTGATGATGA+TGG 0.614655 5.4:+56508115 MS.gene26097:CDS
TGTTGCCGCGAGCTTCGTTG+TGG 0.615230 5.4:+56506223 MS.gene26097:CDS
AGATACAAAGCACCTCATGC+TGG 0.616281 5.4:+56506337 MS.gene26097:CDS
AATGCACGCCACATGACAAG+CGG 0.617629 5.4:-56506793 None:intergenic
TCAAAGAAATGACAAAGGAA+GGG 0.618886 5.4:+56505355 MS.gene26097:CDS
AATTTAACAGTGGATTGAAG+AGG 0.619121 5.4:+56505310 MS.gene26097:intron
GGCACCTTAAGCAAGACAAG+AGG 0.620603 5.4:+56508035 MS.gene26097:CDS
GAATAGCGATGTAGGATAGG+TGG 0.622471 5.4:-56504930 None:intergenic
TTTCTGTTCGAAAGAGCCAA+CGG 0.622910 5.4:+56505075 MS.gene26097:CDS
GGGTGGCATGCAGATAGTAA+TGG 0.625312 5.4:+56506394 MS.gene26097:CDS
CAATTAAGAAATTGACCCAA+AGG 0.625816 5.4:+56508014 MS.gene26097:CDS
AAAGAAACGCCGAACAAACG+CGG 0.628072 5.4:+56504956 MS.gene26097:CDS
TGGCCAATCTTCTGGCTCAG+AGG 0.629159 5.4:+56508135 MS.gene26097:CDS
AATGGAACTTCAAGATGCAG+AGG 0.629339 5.4:+56506537 MS.gene26097:CDS
TGGCAAGGAATATATGAACT+CGG 0.630918 5.4:-56507285 None:intergenic
GAACGGTTCATGCGACGCCG+TGG 0.631294 5.4:+56504893 MS.gene26097:CDS
CCGAACCTGAGATACGTACA+TGG 0.634690 5.4:+56506362 MS.gene26097:CDS
CCATTGCTCTCCTTTAGAGG+AGG 0.635145 5.4:+56508309 MS.gene26097:CDS
CTACATGGTGATAATCAGGA+TGG 0.636072 5.4:+56508061 MS.gene26097:CDS
CTTCAGATATTCCTGCAATG+CGG 0.636107 5.4:-56508260 None:intergenic
TATATACACTATGGTTGATG+TGG 0.641942 5.4:+56511691 MS.gene26097:CDS
TGTGGTAATTGCAATTGCAA+AGG 0.644805 5.4:+56505560 MS.gene26097:CDS
CCTCCTCTAAAGGAGAGCAA+TGG 0.645248 5.4:-56508309 None:intergenic
CGTTGTGGCCAACTTCTAGG+TGG 0.649865 5.4:+56506238 MS.gene26097:CDS
GAGGCATGTCCTGTATGTTG+TGG 0.650351 5.4:+56505542 MS.gene26097:CDS
CGGGTACACAAATTGTCCCA+AGG 0.655726 5.4:+56507178 MS.gene26097:CDS
TTTGTTTCTCCTGAAAACGT+TGG 0.656335 5.4:+56511002 MS.gene26097:CDS
TTATCTGCATGGTGGAAAGG+CGG 0.658125 5.4:+56506303 MS.gene26097:CDS
GTTGGCCACAACGAAGCTCG+CGG 0.661562 5.4:-56506228 None:intergenic
CGCGGCAACAGAGGACACAA+AGG 0.661878 5.4:-56506210 None:intergenic
TTAGATGCACCACATGCCAA+CGG 0.661969 5.4:+56505381 MS.gene26097:CDS
TGACATACACAATAACTCAA+GGG 0.663436 5.4:+56506609 MS.gene26097:CDS
TGAGTGCTTCCGTTTGACAG+AGG 0.665002 5.4:+56511025 MS.gene26097:CDS
TTCTGGCTCAGAGGTCAAGG+AGG 0.666246 5.4:+56508144 MS.gene26097:CDS
AATGTTCTAAAGCCAGACAT+GGG 0.666543 5.4:+56507368 MS.gene26097:CDS
GGAAGAAGATCAAATTGCTG+AGG 0.669254 5.4:+56505523 MS.gene26097:CDS
TCAGGTTCGGAACCAGCATG+AGG 0.678381 5.4:-56506349 None:intergenic
GCTCTTTGCGTAGATTCCAG+GGG 0.682462 5.4:+56506637 MS.gene26097:CDS
GGCAGTAGATCTTCATCACG+AGG 0.683005 5.4:+56506681 MS.gene26097:CDS
CAATGTCAAAGAAATGACAA+AGG 0.691997 5.4:+56505350 MS.gene26097:CDS
GGCCAAGATTATCTGCATGG+TGG 0.693766 5.4:+56506295 MS.gene26097:CDS
AGAAGACGACACATTGACGA+CGG 0.696403 5.4:+56504860 MS.gene26097:CDS
ATGAACTCGGCACAATGACG+AGG 0.697706 5.4:-56507272 None:intergenic
TGAATGCTTAGATTGGTGCG+AGG 0.710757 5.4:+56506867 MS.gene26097:CDS
CTGCATCAGACATATCACAA+TGG 0.714139 5.4:-56507457 None:intergenic
GAAACGCCGAACAAACGCGG+CGG 0.723125 5.4:+56504959 MS.gene26097:CDS
GTACATGGTCAAAATCTGGG+TGG 0.756530 5.4:+56506377 MS.gene26097:CDS
TCAATGGCACTGGAGCAGAG+GGG 0.763341 5.4:+56506717 MS.gene26097:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.4 gene 56504846 56511742 56504846 ID=MS.gene26097
chr5.4 mRNA 56504846 56511742 56504846 ID=MS.gene26097.t1;Parent=MS.gene26097
chr5.4 exon 56504846 56505223 56504846 ID=MS.gene26097.t1.exon1;Parent=MS.gene26097.t1
chr5.4 CDS 56504846 56505223 56504846 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56505320 56505435 56505320 ID=MS.gene26097.t1.exon2;Parent=MS.gene26097.t1
chr5.4 CDS 56505320 56505435 56505320 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56505511 56505610 56505511 ID=MS.gene26097.t1.exon3;Parent=MS.gene26097.t1
chr5.4 CDS 56505511 56505610 56505511 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56505698 56505842 56505698 ID=MS.gene26097.t1.exon4;Parent=MS.gene26097.t1
chr5.4 CDS 56505698 56505842 56505698 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56505993 56506056 56505993 ID=MS.gene26097.t1.exon5;Parent=MS.gene26097.t1
chr5.4 CDS 56505993 56506056 56505993 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56506150 56506888 56506150 ID=MS.gene26097.t1.exon6;Parent=MS.gene26097.t1
chr5.4 CDS 56506150 56506888 56506150 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56507149 56507478 56507149 ID=MS.gene26097.t1.exon7;Parent=MS.gene26097.t1
chr5.4 CDS 56507149 56507478 56507149 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56507959 56508330 56507959 ID=MS.gene26097.t1.exon8;Parent=MS.gene26097.t1
chr5.4 CDS 56507959 56508330 56507959 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56509548 56509620 56509548 ID=MS.gene26097.t1.exon9;Parent=MS.gene26097.t1
chr5.4 CDS 56509548 56509620 56509548 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56509722 56509807 56509722 ID=MS.gene26097.t1.exon10;Parent=MS.gene26097.t1
chr5.4 CDS 56509722 56509807 56509722 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56510978 56511097 56510978 ID=MS.gene26097.t1.exon11;Parent=MS.gene26097.t1
chr5.4 CDS 56510978 56511097 56510978 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
chr5.4 exon 56511677 56511742 56511677 ID=MS.gene26097.t1.exon12;Parent=MS.gene26097.t1
chr5.4 CDS 56511677 56511742 56511677 ID=cds.MS.gene26097.t1;Parent=MS.gene26097.t1
Gene Sequence

>MS.gene26097

ATGGCGTTGGCGGGAGAAGACGACACATTGACGACGGCGTCATCGTTGAACGGTTCATGCGACGCCGTGGCTGCGACTGAGAGACCACCTATCCTACATCGCTATTCTAGAAAGAAACGCCGAACAAACGCGGCGGAGGAGGATTTAACCAAGAACGTAGAACCACCAACGAACGCTAAACGCAACCGTAAAACGGAAGAAGGTGCTTCTTCTTCTACCGTTGCTGCTGTTTCTGTTCGAAAGAGCCAACGGATAAGAAAAACAAACACATTTTATCTTGCTGAGTTAGGGCTTCAAGAAAAACCTAGAAAAGGAAAACAGAGTGCTCAAAATCAAAAGAATGCTGAAAAAATCAACAACAAAATTCGTCGTAATAAGGTCACAACATCTTCTCTTCTTCTAATGATTATTATTATTAATTACATTCCTTTGTGGTTCTGGAATTTACTAAATCTGATTCAACAAATTTAACAGTGGATTGAAGAGGAGTCTTTAATGTGCCATCAATGTCAAAGAAATGACAAAGGAAGGGTTGTTAGATGCACCACATGCCAACGGAAAAGATTTTGTGTATGCTGTATTAACAAATGGTATGTATCTATATTTCTACAACTTCTTCATTTGCCAATGTAATGTATCATATATATATTGTTTTTGTTGTTAAGGTATCCTCACTTGGAAGAAGATCAAATTGCTGAGGCATGTCCTGTATGTTGTGGTAATTGCAATTGCAAAGGGTGTTTGAGATCACGGAAACTTATCGATGTATGTACTCTAACTTCTTCGACCCCTTTTACGTACATTTTCTCTATTCATTCAACATTTTTAATCTTATTATCTTATACATTACAGTCAATTAAACAAAAAGAGGACGACGATACCAACGATGATCATCAGGTTGAGGTCTCCAAGTATATGCTCAAAGCTCTTCTACCACATTTAATACGATTGGATCAACAACAAATGTTTGAGAAGGATATAGAAGCCAAGATACAAGGTATTTTATATACACCTTTCTTTCTTTTCAATTACTTACATACTAATTCATTTCCCGCATGTGCTTTTTCATGGTCGATCATTTTTAGTTTCATATATTTTCCCTTCCTTTTTTTTTTTTTTTAATTTACTTTTGGGATCAACATTGTAGGACGCTCACTCTCTGAGCTAAAAATTAAAGTATCAGTTCTCCATAATGATGAGCGCGCGTACTGGTAGGGAATTATTTCGTATATAAATTGGATTTTTACGTAGTTAGTTAGTTATTCCAATCCTATGTTGTTATCAATGACTCATTACTTTTGTAGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGATGCACAAAATGCTCTTTTGACCTTTGTGTCCTCTGTTGCCGCGAGCTTCGTTGTGGCCAACTTCTAGGTGGTGCAGACCCATTTGATTTTGAGTTTATCTTCCGAGGCCAAGATTATCTGCATGGTGGAAAGGCGGAGGAAGAAACCAGATACAAAGCACCTCATGCTGGTTCCGAACCTGAGATACGTACATGGTCAAAATCTGGGTGGCATGCAGATAGTAATGGCAATATTCCCTGTCCAAAATCTAAGAATAAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATTACATCTCTGACTTAGTATGTAAAGCAAAAGAACTTGCAGATTCAATGGAACTTCAAGATGCAGAGGAGACTCTTGATAATAGCTGCTCTTGTTTGAAGCCTGTTAGGAACAGAGATGACATACACAATAACTCAAGGGAAGCAGCTCTTTGCGTAGATTCCAGGGGCAATTTTTTGTACCATCCTAGGGCAGTAGATCTTCATCACGAGGATTTAGGACATTTTCAATGGCACTGGAGCAGAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAAAAGCAAGACCAAGCACAAGCCACTTTTGGATGTTAAGGCACTTGAATGCTTAGATTGGTGCGAGGTTTGTTCGATTTCTAAACCTTGTACATGAATTTTGTTCGATTTCTTGATCTTTGAGCTTCTCATATGGTTTCTTGCACTCTAGTGTCCCTTGCATCCCCTGCTTTCTGTTTTTCTGTTGGTATTTTTCTCTGTTTCTTATGCATACTAACCGCAGTTGTTTTCTTTTTCTTTCATTTCTGTATTTTTTTTTTACTATACTTGACATGTCTATGTGTTACCGGTTATTTAAATTTTATTTGAGTTTTTGATTCTATGCAGATAGATATTAATGTGCACCAATTCTTTACCGGGTACACAAATTGTCCCAAGGATAAACAGGATTGGCCTCGAGTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTACCTCGTCATTGTGCCGAGTTCATATATTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATAATGTTCTAAAGCCAGACATGGGACCAAAAACATATATAGCTTATGGATTTTCTCAGGAGCTTGGACGGGGTGATTCAGTGACCAAGCTCCATTGTGATATGTCTGATGCAGTATGCTTCAATTCTCTGTGTCTTTCCTGGACTGTTTTTTGTAGATTGTGTTATGAATTTTTTTTATGTTTATATTTTTATTTATTATTTGAGTATCATATTGAAAGATGCATAATTTGTAGGATGTAAATGATGCCTTTGTATGCCATTGCATTAAGAGCTGATAGTTGTGTAGTTTTAAGTACATCAAATCTTAAATTTTTGGTCATTGATCTGTCTTTGAAACACTCATTTGATTATATATTTGATATATTTGATTTGAAGTGTCATTGACCTTGGTATTTTGGTAACTCATAATTTGAAAGTATTATTTTTCTGATTAGTTGCATCATTTGACAAAGTATTTTTTAGACTTATATGCACTGTCTTTCCCGATTAATTATTTGTTTGTACTTTATATGTTTTGCTTTGTGTCTTGAGTTCTTACTGTATTATGGGGAAAATTAAATTGTTTTGTTTCTTTTACAATTTGGCTTTTAGGTAAATGTGTTGACTCATATTGCTAAAGCAAAATTGGATCCTGCGAGTATTGATGCAATTAAGAAATTGACCCAAAGGCACCTTAAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGAGACCAATTTGTCTTCTTCCATAAATGCTTCAGAGAGCACTGATGATGATGGCCAATCTTCTGGCTCAGAGGTCAAGGAGGTTGATAAAGCGACGATGAAACAAGAAAATGGTTTGTTGGTTGGAGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGACGTACCCGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCACGTCCATTGCTCTCCTTTAGAGGAGGTAAAGTTAGTTGATATGATTTTCTATTATCTGTTTTGATGCCGCTTGTTAACTTGAGTCATTAATGAAACTTAGTTGCTACTAATTAGTTTTGCTGCTGCGAACAAACATGCCATATAGCTACCCCTTTATTTTTCACATTTTGCTGCTGCGAACATGATAAAATTGACACTATCTCATTGCTTTTCCCTATTTGACCTAATTCTTAGCTTATGCTTTATTTTATTTTTCAGTGTTGTTACTGTTGTTTTGCTTATATACCTTGTAATATGTTCTATGGGGCCTTCATAGTTTAGTCTCATAGCCCATTTAACTCCCTATAAATTCCTATCAATAATTTGAGTTACATCAAGTAGTTTAGTTTTCACTTTTTCAAACAAAAGAAACCAAAATGCCCCAAATAAAGGTATCGTGCAGCGTGGATTTGGCTTCGTCTGGGCATCACATTGCCTATTGCCTGCTGGCTGCTGCTACCTCGCCTCATGTGGCGTTGCTTCTTTTTACCTAGCCCGCTCTTTTTGTAGAGACCTTGTGCCTCTCTTCTTTTTTCGTCTACCTAAATCTCTCTTTTTATAGTGTTATGCTTGTTATACTTCTGTACATTGTAATAAGTTGGATTGGTCCTTTGGTTGTTCAGTCCTTCAGCACATTGGTAAGTGCTGCCCAGTGTAAAAGGTTCCAGCACACTTTGTTAGGGGCAACTGTCCATAACAGATTGCAATTCCTATAAATCATTATCGTACTTTCAGTTTTGCGAATAAGCTACATCAACAGAAAGTTATCTCCAGTTATCTGTTTACATTTTCCTTCATTATCTCTTGTTTTCTCAGCTAGTGATTGCTAACATCTGTTAGGTTCAGATTTTTTTAATTATGAAATTTACATGTCCCAAAGGATTGGGCTTGGCGAAGGATCAAGCTGGTAATAAATAATATTTGTGAGTAGTTAATTTTGAATACATACTATCACGAGTAAGGAATTATGTTGATGTGAATAGCGGTATTGAAACATAAGATATGCAGGGAAATGCATTCTGGATGTAATTCCAGTCCAGTAGGTCACTGATTCAGTAGACGTTCTGTATATCTTTCGTTTTCAGTTTCGAAGTTCACTAGGCAGTAGACGGGGGCTTCTTTATTTAGATAACTCGGCAGTCTGGTGACCTTTCACTCCTTATGTATGTATCTTCTTGAATGACATCTCCTTTGGCAATGTAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCGTCCGGCATAAGAAAAAGCTAAAGGAGGAGTATGGTTAGTAGTGCTTATATTTTACTTATGTTGTTTGGTCTGTGGAGTGTAGATCAATAGGCTTGTACCATCTTGTTAACAATTCAACACTGACTTGTATGTAGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGGGATGCTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATTTGAAGGTAAAATTTACGTACATAGTTGTTTTGTTTTATGTTTAATGAATGCGTAAATTTTCCTTGTTTGCTAAGAAGTGTAGATGTTGATGTTATGAGTTTTACATAATAGAAGAGAAAAAAATAAATATAAATATGGTTAAAGATGATTGATAATGACTTGATGACTAACTATTATGCTACCAAGTTCCTGAAAGTTTGAGAATGTCCTAGTAGTTATATTGTATTCAAAATCCTTATCACATTAATGCTAAATAATTGTCATTTGACAATAATGTGATATTAACTTGATACAAAAGACTAAATGCTAATTCCTAGGCAAAACATTATTACGACAACGTCATAGGTAAAAAATACCTTCCATATTCTGTTATACTTCTTATTATAGAACATTATAATAGGAGATTGGCCAGTTAGTTATTATGCAATTATGTTTTTATTATTATCTGCGTGTGTCGTTTATGTATAGTAGTTATGAGTGTTTCTGTTTAGAATAAAGTAAGAAGGACATAATAGAATTGGTTATATGGAAATTAATTAAGTGGTTATTGGGACTCAAAATCACGGGGAACCAGCATAACCCATCACTGTCAAGTGTGTTCCTGTTCTGTCTTTTCTTGTAACAGTCTGTGTGTAAAAAATGTATATGTCTATGTATTTGTGTGAATCTCTTCTCCAGAGGTTAGATCAATAATATTCCACTGTATTTCATACATAATTATACTTGCGACCAGTTTCTATCATATTCCCATTTAAACATTCCTAAGAGGGGGAGGGGTTTGGGAAAATGGTTCCTATGAATGTGGGCATGGAATTTAGATTGAGCCTAACTCAATTTGCAAAAAACTAGCTTATAAGTGAGAGATACTTACCACATAAATACATCAAGCCATATCATCCAGCCGTCTAGATCGTTGCTCGAGTTGCATGCCAATTGTCGCCCAATGAATATAGCATTGCTTCTGATATCGTAGTTTTTAGGGTGGTCTTAACTCAAACCAATGAGTCATTTAAGTTAACGATTTGAGTGCATCTAAGTTCTTTTTGAAGACTGCATTTTTAAACCTTCAATTTCTTGCAGGTTACCCAAGCCATTATCGCTAGCCCACTTTAATGTTCTTGTTAATGCTTGAAAAATTTGTATGAACGTTAATGATATGCATCGTCATTTTTCAGTCATGCACCAAGGTTGCACTTGATTTTGTTTCTCCTGAAAACGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTATGCCAGACTATTATGGATTTAATTCTTCTGTTTATACGCTTACCAAAGCAATTAAGCCTGATTAGAAGCTTTCAGTTAGACCTATTGTTCATGTTGCAATTGGCCAAATCTGAACACTTCCATTGGTTGAACTGGTTCAAGCATATTATTCACATTTGTTTGAATTGATCATTTTTTACCATCTAGATTCTAGACTGCACAGTGCTATTTAATTCACTAGTAATTATAATGTAACATTAATTTCTTAAAAAATGATGGGAATAGGAAAAAATGGTTATGCATAGTTAGTAGACAATTTAACTTTTTATCGAATGTTTCTTGGAAAAGTCATCAATAGCTCTAGTGAAGAGTATTTGTTTTATATTTTATATTTTTCTATCTATTAGTATTGTAGTTTTTATGCAATGACAAGGTTCTAATATTAACTATTTATACTTGTTGAATGTTTGGCAGTTTTGAGTGTAAAGCTATTTCAACAAACTATGTTACCGTGTCACACCGTTATGTCATATCAATCGATTCTTTATAGTATTTTCTGTAAAGTTTGTTCCTAATTGCTGCTTCTTTTGGTGACAGGTGAAGAAAATGATTATATACACTATGGTTGATGTGGTCAAAACATTAGAGAAAGCATTGGTATGA
Protein sequence

>MS.gene26097.t1

MALAGEDDTLTTASSLNGSCDAVAATERPPILHRYSRKKRRTNAAEEDLTKNVEPPTNAKRNRKTEEGASSSTVAAVSVRKSQRIRKTNTFYLAELGLQEKPRKGKQSAQNQKNAEKINNKIRRNKWIEEESLMCHQCQRNDKGRVVRCTTCQRKRFCVCCINKWYPHLEEDQIAEACPVCCGNCNCKGCLRSRKLIDSIKQKEDDDTNDDHQVEVSKYMLKALLPHLIRLDQQQMFEKDIEAKIQGRSLSELKIKVSVLHNDERAYCDNCKTSIFDYHRRCTKCSFDLCVLCCRELRCGQLLGGADPFDFEFIFRGQDYLHGGKAEEETRYKAPHAGSEPEIRTWSKSGWHADSNGNIPCPKSKNKCDHGYLELRSIFQPNYISDLVCKAKELADSMELQDAEETLDNSCSCLKPVRNRDDIHNNSREAALCVDSRGNFLYHPRAVDLHHEDLGHFQWHWSRGEPVIVSNVLECTSGLSWEPLVMWRAFRQKSKTKHKPLLDVKALECLDWCEIDINVHQFFTGYTNCPKDKQDWPRVLKLKDWPPSNLFEESLPRHCAEFIYSLPFKEYTNPFKGALNLAVKLPDNVLKPDMGPKTYIAYGFSQELGRGDSVTKLHCDMSDAVNVLTHIAKAKLDPASIDAIKKLTQRHLKQDKRELHGDNQDGETNLSSSINASESTDDDGQSSGSEVKEVDKATMKQENGLLVGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPLEEVIHPIHDQTFYLTVRHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIIYTMVDVVKTLEKALV